Citrus Sinensis ID: 011175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHcccccccccccccccccEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHccccHccccccccccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcHHHHEEEEEccccEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEc
Coil and Loop (DISEMBL)
msapspgppaansssppppvsnpptisppppvsnppksspppppvskppttspppsppasnpptsssppasspptsspppasnpptsspppsppasspptisppppvsnpptrsppppsstpppnsppsppsdppanspppsnppsnlpppppssveppkrsppsvppqnpppppsssppknsppapiavppsnvpppptqtpptpaspiaprpsnsspnsppppstkrlspppgipvpstentpgngtnpsspesssspsnngigtAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKevsglngvyimpsplgsssttdssyiktqssapligsgpgsdfvnspqdpgglghsrsmfTYEELVKAtdgfadqnllgeggfgsvykgylpdgrEVAIKQLKigggqgereFKAEVEIISRIHHRHLVSLVGycisddrrlliydyvpnntlyfhlhgegrpvldwATRVKIAAGAARGLAYLHEDCKYLIFCF
Flexible Loop (DISEMBL)
msapspgppaanssspppPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEvsglngvyimpsplgsssTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLkigggqgerEFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Low Complexity Region (SEG)
MsapspgppaansssppppvsnpptisppppvsnppksspppppvskppttspppsppasnpptsssppasspptsspppasnpptsspppsppasspptisppppvsnpptrsppppsstpppnsppsppsdppanspppsnppsnlpppppssveppkrsppsvppqnpppppsssppknsppapiavppsnvpppptqtpptpaspiaprpsnsspnsppppstkrlspppGIPVPSTENTpgngtnpsspesssspsnngigtagtvviavavgiiaFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGsssttdssYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Disordered region (IsUnstruct)
************************************************************************************************************************************************************************************************************************************************************************IGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIM***********************************************MFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFC*
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************************************************************VVIAVAVGIIAFSLIGLVVWCLR************************************************************RSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQ***********FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Disordered Region (DISEMBL)
*****************************************************************************************************************************************************************************************APIAVPPSNV*************************************PPGIPVPST*********************NGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPL***********KTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Disordered Region (DISPRO)
************************T************************************************************************************************PP*NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST************************GTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKE*****************************************************HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q9SX31	708	Proline-rich receptor-lik	yes	no	0.455	0.316	0.662	1e-92
Q9C660	762	Proline-rich receptor-lik	no	no	0.439	0.283	0.663	9e-90
Q9FFW5	681	Proline-rich receptor-lik	no	no	0.469	0.339	0.552	2e-72
Q9CAL8	710	Proline-rich receptor-lik	no	no	0.422	0.292	0.496	6e-65
Q9ZUE0	720	Proline-rich receptor-lik	no	no	0.434	0.297	0.491	6e-64
Q9LV48	652	Proline-rich receptor-lik	no	no	0.276	0.208	0.698	6e-61
Q8GX23	670	Proline-rich receptor-lik	no	no	0.644	0.473	0.428	2e-59
Q9LK03	717	Proline-rich receptor-lik	no	no	0.278	0.191	0.664	2e-58
Q9ZNQ8	633	Proline-rich receptor-lik	no	no	0.276	0.214	0.669	2e-57
Q9C821	509	Proline-rich receptor-lik	no	no	0.268	0.259	0.659	3e-55

>sp|Q9SX31|PERK9_ARATH Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 188/228 (82%), Gaps = 4/228 (1%)

Query: 258 SSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSST 317
           +S +N+GIGT   V I+VAV ++ F+L G+ VWCLR+R+K +S ++G  + PSP+ S++ 
Sbjct: 269 NSTNNSGIGTGAVVGISVAVALVVFTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTAR 328

Query: 318 TDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGE 377
           +DS++ + QSSAP +G+   S    S    GGLG+S+++F+YEELVKAT+GF+ +NLLGE
Sbjct: 329 SDSAFFRMQSSAP-VGASKRSGSYQSQ--SGGLGNSKALFSYEELVKATNGFSQENLLGE 385

Query: 378 GGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR 437
           GGFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DR
Sbjct: 386 GGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDR 445

Query: 438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           RLLIYDYV NN LYFHLHGE + VLDWATRVKIAAGAARGLAYLHEDC
Sbjct: 446 RLLIYDYVSNNDLYFHLHGE-KSVLDWATRVKIAAGAARGLAYLHEDC 492

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C660|PEK10_ARATH Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2

 Score =  331 bits (848), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 179/217 (82%), Gaps = 1/217 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSS-TTDSSYIKTQSS 328
            V +++ V ++  +LIG+VV CL++RKK +S + G Y+MP+P+ SSS  +DS+ +KTQSS
Sbjct: 330 VVGVSIGVALVLLTLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSS 389

Query: 329 APLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL 388
           APL+G+   +    S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG L
Sbjct: 390 APLVGNRSSNRTYLSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVL 449

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           PD R VA+KQLKIGGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN
Sbjct: 450 PDERVVAVKQLKIGGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNN 509

Query: 449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
            LYFHLH  G P LDWATRVKIAAGAARGLAYLHEDC
Sbjct: 510 NLYFHLHAAGTPGLDWATRVKIAAGAARGLAYLHEDC 546

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FFW5|PERK8_ARATH Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/246 (55%), Positives = 168/246 (68%), Gaps = 15/246 (6%)

Query: 246 GNGTNPSSPESSSSPSNNGIGTAGTVV----IAVAVGIIAFSLIGLVVWCLRRRKKEVSG 301
           GN T PSS    S     GI   G +V    +         SL  + VW  R+RK++  G
Sbjct: 219 GNNTLPSSSPGKSEVGTGGIVAIGVIVGLVFL---------SLFVMGVWFTRKRKRKDPG 269

Query: 302 LNGVYIM-PSPLGSSSTTDSSYIKTQSSA-PLIGSGPGSDFVNSPQDPGGLGHSRSMFTY 359
               Y M PS   S   +D     ++SSA P + S  GSD++ +  D G + + RS F+Y
Sbjct: 270 TFVGYTMPPSAYSSPQGSDVVLFNSRSSAPPKMRSHSGSDYMYASSDSGMVSNQRSWFSY 329

Query: 360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR 419
           +EL + T GF+++NLLGEGGFG VYKG L DGREVA+KQLKIGG QGEREFKAEVEIISR
Sbjct: 330 DELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLKIGGSQGEREFKAEVEIISR 389

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLA 479
           +HHRHLV+LVGYCIS+  RLL+YDYVPNNTL++HLH  GRPV+ W TRV++AAGAARG+A
Sbjct: 390 VHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLHAPGRPVMTWETRVRVAAGAARGIA 449

Query: 480 YLHEDC 485
           YLHEDC
Sbjct: 450 YLHEDC 455

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9CAL8|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1

 Score =  248 bits (634), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 160/264 (60%), Gaps = 56/264 (21%)

Query: 260 PSNNGIGTAGTVVIAVAVGIIAFSLIGL--VVWCLRRRKKEVSGLNGVYIMPSPLGSSST 317
           P+N+G G  G  +   A  I  F++I L  VV+ +RR+KK                  + 
Sbjct: 224 PANSGGGYQGKTMAGFA--IAGFAVIALMAVVFLVRRKKKR--------------NIDAY 267

Query: 318 TDSSYI-----KTQSSAPLIG-------SGPGSDFVNSPQD----------PGGLGHSRS 355
           +DS Y+       +S   L G       SGPG    NS Q            GG G++RS
Sbjct: 268 SDSQYLPPSNFSIKSDGFLYGQNPTKGYSGPGG--YNSQQQSNSGNSFGSQRGGGGYTRS 325

Query: 356 --------------MFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
                          FTYEEL   T+GF+  N+LGEGGFG VYKG L DG+ VA+KQLK+
Sbjct: 326 GSAPDSAVMGSGQTHFTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLVAVKQLKV 385

Query: 402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV 461
           G GQG+REFKAEVEIISR+HHRHLVSLVGYCI+D  RLLIY+YVPN TL  HLHG+GRPV
Sbjct: 386 GSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHLHGKGRPV 445

Query: 462 LDWATRVKIAAGAARGLAYLHEDC 485
           L+WA RV+IA G+A+GLAYLHEDC
Sbjct: 446 LEWARRVRIAIGSAKGLAYLHEDC 469

Regulates negatively root hairs elongation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUE0|PEK12_ARATH Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2

 Score =  245 bits (625), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 149/244 (61%), Gaps = 30/244 (12%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSA 329
           T+V     G    +LIG+V    R++K+ +   N    +P P  + S     ++  Q   
Sbjct: 246 TMVGMAVAGFAIMALIGVVFLVRRKKKRNIDSYNHSQYLPHP--NFSVKSDGFLYGQDPG 303

Query: 330 PLIGSGP-GSDFVNSPQ---------------------------DPGGLGHSRSMFTYEE 361
               SGP GS + NS Q                           D   LG  ++ F+YEE
Sbjct: 304 KGYSSGPNGSMYNNSQQQQSSMGNSYGTAGGGYPHHQMQSSGTPDSAILGSGQTHFSYEE 363

Query: 362 LVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH 421
           L + T GFA +N+LGEGGFG VYKG L DG+ VA+KQLK G GQG+REFKAEVEIISR+H
Sbjct: 364 LAEITQGFARKNILGEGGFGCVYKGTLQDGKVVAVKQLKAGSGQGDREFKAEVEIISRVH 423

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           HRHLVSLVGYCISD  RLLIY+YV N TL  HLHG+G PVL+W+ RV+IA G+A+GLAYL
Sbjct: 424 HRHLVSLVGYCISDQHRLLIYEYVSNQTLEHHLHGKGLPVLEWSKRVRIAIGSAKGLAYL 483

Query: 482 HEDC 485
           HEDC
Sbjct: 484 HEDC 487

Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1

 Score =  235 bits (599), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 121/136 (88%)

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+KG LP G+EVA+KQLK G GQGERE
Sbjct: 261 LGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKGILPSGKEVAVKQLKAGSGQGERE 320

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
           F+AEVEIISR+HHRHLVSL+GYC++  +RLL+Y++VPNN L FHLHG+GRP ++W+TR+K
Sbjct: 321 FQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVPNNNLEFHLHGKGRPTMEWSTRLK 380

Query: 470 IAAGAARGLAYLHEDC 485
           IA G+A+GL+YLHEDC
Sbjct: 381 IALGSAKGLSYLHEDC 396

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GX23|PERK5_ARATH Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 200/366 (54%), Gaps = 49/366 (13%)

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P N  PP P        S P  PP  P  P + SP + +PP+P A               
Sbjct: 87  PENPSPPAPEG------STPVTPPAPPQTPSNQSPERPTPPSPGA-----------NDDR 129

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
              +        S+P+  PP S  R S   G P P    +P   +  S   S + P  N 
Sbjct: 130 NRTNGGNNNRDGSTPS--PPSSGNRTSGDGGSPSPPRSISPPQNSGDSDSSSGNHPQAN- 186

Query: 265 IGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVS-GLNGV-YIMPSPLGSSSTTDSSY 322
               G ++  +    +   L   +  C  R+KK+ S  +N + Y   +P G + + +  Y
Sbjct: 187 ---IGLIIGVLVGAGLLLLLAVCICICCNRKKKKKSPQVNHMHYYNNNPYGGAPSGNGGY 243

Query: 323 IK---TQSSAPLIG------------SGPGSDFVN--------SPQDPGGLGHSRSMFTY 359
            K         + G            SGP SD  N        SPQ    LGH++S FTY
Sbjct: 244 YKGTPQDHVVNMAGQGGGNWGPQQPVSGPHSDASNLTGRTAIPSPQ-AATLGHNQSTFTY 302

Query: 360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR 419
           +EL  AT+GFA  NLLG+GGFG V+KG LP G+EVA+K LK+G GQGEREF+AEV+IISR
Sbjct: 303 DELSIATEGFAQSNLLGQGGFGYVHKGVLPSGKEVAVKSLKLGSGQGEREFQAEVDIISR 362

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLA 479
           +HHRHLVSLVGYCIS  +RLL+Y+++PNNTL FHLHG+GRPVLDW TRVKIA G+ARGLA
Sbjct: 363 VHHRHLVSLVGYCISGGQRLLVYEFIPNNTLEFHLHGKGRPVLDWPTRVKIALGSARGLA 422

Query: 480 YLHEDC 485
           YLHEDC
Sbjct: 423 YLHEDC 428

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK03|PERK2_ARATH Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 119/137 (86%)

Query: 349 GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER 408
           GLG  +  F YEEL +AT+GF++ NLLG+GGFG V+KG L +G+EVA+KQLK G  QGER
Sbjct: 334 GLGIYQGTFNYEELSRATNGFSEANLLGQGGFGYVFKGMLRNGKEVAVKQLKEGSSQGER 393

Query: 409 EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRV 468
           EF+AEV IISR+HHRHLV+LVGYCI+D +RLL+Y++VPNNTL FHLHG+GRP ++W++R+
Sbjct: 394 EFQAEVGIISRVHHRHLVALVGYCIADAQRLLVYEFVPNNTLEFHLHGKGRPTMEWSSRL 453

Query: 469 KIAAGAARGLAYLHEDC 485
           KIA G+A+GL+YLHE+C
Sbjct: 454 KIAVGSAKGLSYLHENC 470

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZNQ8|PERK4_ARATH Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 117/136 (86%)

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           LG ++S FTY+EL  AT GF D NLLG+GGFG V+KG LP G+EVA+K LK G GQGERE
Sbjct: 265 LGFNKSTFTYQELAAATGGFTDANLLGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGERE 324

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
           F+AEV+IISR+HHR+LVSLVGYCI+D +R+L+Y++VPN TL +HLHG+  PV++++TR++
Sbjct: 325 FQAEVDIISRVHHRYLVSLVGYCIADGQRMLVYEFVPNKTLEYHLHGKNLPVMEFSTRLR 384

Query: 470 IAAGAARGLAYLHEDC 485
           IA GAA+GLAYLHEDC
Sbjct: 385 IALGAAKGLAYLHEDC 400

Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels. Regulates ABA signaling pathways. Modulates the expression of genes related to cell elongation and ABA signaling during root growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C821|PEK15_ARATH Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=1 SV=1

 Score =  216 bits (551), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 112/132 (84%)

Query: 354 RSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAE 413
           +++FTYE+L KAT  F++ NLLG+GGFG V++G L DG  VAIKQLK G GQGEREF+AE
Sbjct: 128 QNLFTYEDLSKATSNFSNTNLLGQGGFGYVHRGVLVDGTLVAIKQLKSGSGQGEREFQAE 187

Query: 414 VEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAG 473
           ++ ISR+HHRHLVSL+GYCI+  +RLL+Y++VPN TL FHLH + RPV++W+ R+KIA G
Sbjct: 188 IQTISRVHHRHLVSLLGYCITGAQRLLVYEFVPNKTLEFHLHEKERPVMEWSKRMKIALG 247

Query: 474 AARGLAYLHEDC 485
           AA+GLAYLHEDC
Sbjct: 248 AAKGLAYLHEDC 259

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
225423802	726	PREDICTED: proline-rich receptor-like pr	0.481	0.326	0.764	1e-104
356494796	724	PREDICTED: proline-rich receptor-like pr	0.475	0.323	0.690	1e-100
356502698	747	PREDICTED: proline-rich receptor-like pr	0.436	0.287	0.717	2e-97
255546929	811	ATP binding protein, putative [Ricinus c	0.479	0.290	0.741	4e-94
297838635	482	hypothetical protein ARALYDRAFT_894642 [	0.467	0.477	0.659	9e-94
15221470	708	protein kinase-like protein [Arabidopsis	0.455	0.316	0.662	9e-91
356567172	756	PREDICTED: proline-rich receptor-like pr	0.575	0.374	0.534	2e-88
79352581	762	proline-rich extensin-like receptor kina	0.439	0.283	0.663	6e-88
224101629	685	predicted protein [Populus trichocarpa]	0.475	0.341	0.682	4e-87
255585933	752	ATP binding protein, putative [Ricinus c	0.516	0.337	0.589	7e-87

>gi|225423802|ref|XP_002277905.1| PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera] gi|297737910|emb|CBI27111.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/238 (76%), Positives = 207/238 (86%), Gaps = 1/238 (0%)

Query: 249 TNPSSPESS-SSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYI 307
            N S+P  S +S S  GIGT GTV I + +G++   LIG+   CLR+RKK+VSGLNG Y+
Sbjct: 281 VNNSTPNGSPNSTSKGGIGTVGTVAIGLVLGLVVLVLIGVAFLCLRKRKKKVSGLNGGYV 340

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
           MP+ LGSS  +DSS+ KT SSAPLIGSG GSDFV SP +PGGLG+SRS FTYEELVKAT+
Sbjct: 341 MPATLGSSPRSDSSFTKTLSSAPLIGSGSGSDFVYSPSEPGGLGNSRSWFTYEELVKATN 400

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           GF+ QNLLGEGGFGSVYKGYLPDGRE+A+KQLKIGG QGEREFKAEVEIISRIHHRHLVS
Sbjct: 401 GFSTQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGAQGEREFKAEVEIISRIHHRHLVS 460

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           LVGYCIS+ +RLL+YDYVPNNTLYFHLHGEGRPV+DWATRVK+AAGAARG+AYLHEDC
Sbjct: 461 LVGYCISESQRLLVYDYVPNNTLYFHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDC 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494796|ref|XP_003516269.1| PREDICTED: proline-rich receptor-like protein kinase PERK10-like [Glycine max]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 194/239 (81%), Gaps = 5/239 (2%)

Query: 247 NGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVY 306
           NGT  SSP+             G V I+V  G +    IG+++WC+RR+K++V  ++G Y
Sbjct: 281 NGTENSSPDGGGDGIG----IGGVVAISVVAGFLLLGFIGVLIWCMRRKKRKVL-VSGDY 335

Query: 307 IMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKAT 366
           +MPS L SS  +DSS+ KT SSAPL+ SG GSD V +P +PGGLGHSRS F+YEEL+KAT
Sbjct: 336 VMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSEPGGLGHSRSWFSYEELIKAT 395

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           +GF+ QNLLGEGGFG VYKG LPDGRE+A+KQLKIGGGQGEREFKAEVEIISRIHHRHLV
Sbjct: 396 NGFSTQNLLGEGGFGCVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLV 455

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           SLVGYCI D++RLL+YDYVPNNTLYFHLHGEG+PVL+WA RVKIAAGAARGL YLHEDC
Sbjct: 456 SLVGYCIEDNKRLLVYDYVPNNTLYFHLHGEGQPVLEWANRVKIAAGAARGLTYLHEDC 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502698|ref|XP_003520154.1| PREDICTED: proline-rich receptor-like protein kinase PERK10-like [Glycine max]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 155/216 (71%), Positives = 183/216 (84%), Gaps = 1/216 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSA 329
            V I+V  G +    IG+++WC+RR+K+++  ++G Y+MPS L SS  +DSS+ KT SSA
Sbjct: 315 VVAISVVAGFLLLGFIGVLIWCMRRQKRKLP-VSGGYVMPSTLASSPESDSSFFKTHSSA 373

Query: 330 PLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLP 389
           PL+ SG GSD V +P DPGGLG+SRS F+YEEL+K T+GF+ QNLLGEGGFG VYKG LP
Sbjct: 374 PLVQSGSGSDVVYTPSDPGGLGNSRSWFSYEELIKVTNGFSTQNLLGEGGFGCVYKGCLP 433

Query: 390 DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT 449
           DGR++A+KQLKIGGGQGEREFKAEVEII RIHHRHLVSLVGYCI D RRLL+YDYVPNN 
Sbjct: 434 DGRDIAVKQLKIGGGQGEREFKAEVEIIGRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNN 493

Query: 450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           LYFHLHGEG+PVL+WA RVKIAAGAARGLAYLHEDC
Sbjct: 494 LYFHLHGEGQPVLEWANRVKIAAGAARGLAYLHEDC 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546929|ref|XP_002514522.1| ATP binding protein, putative [Ricinus communis] gi|223546126|gb|EEF47628.1| ATP binding protein, putative [Ricinus communis]

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/236 (74%), Positives = 202/236 (85%)

Query: 250 NPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMP 309
           N S+PE+S SP + GIGT G V I V VGII  S++GL V C+R+R+KE  GLNG Y+MP
Sbjct: 365 NTSAPENSKSPGDGGIGTGGIVAIGVVVGIIMLSIVGLAVLCMRKRRKEAHGLNGGYVMP 424

Query: 310 SPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGF 369
           SPLGSS  TD +  K Q++ PL+GSG  +D+V SP   GGLG+SRS F YEEL+K+T+GF
Sbjct: 425 SPLGSSPRTDLNLSKAQTTIPLMGSGSSTDYVYSPSGSGGLGNSRSWFMYEELLKSTNGF 484

Query: 370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           + QNLLGEGGFGSVYKG LPDGREVA+KQLK+GGGQGEREFKAEVEIISRIHHRHLVSLV
Sbjct: 485 SSQNLLGEGGFGSVYKGCLPDGREVAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLV 544

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           GYCISD+RRLL+YDYVPNNTL+FHLHGEGRPVL+WA RVKIAAGAARG+AYLHEDC
Sbjct: 545 GYCISDNRRLLVYDYVPNNTLHFHLHGEGRPVLNWAARVKIAAGAARGIAYLHEDC 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838635|ref|XP_002887199.1| hypothetical protein ARALYDRAFT_894642 [Arabidopsis lyrata subsp. lyrata] gi|297333040|gb|EFH63458.1| hypothetical protein ARALYDRAFT_894642 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 195/235 (82%), Gaps = 5/235 (2%)

Query: 254 PESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLG 313
           P+SS+S + +GIGT   V I+VAV ++ F+LIG+ VWC+RRR+K +S ++G  + PSP+ 
Sbjct: 96  PDSSNSTNGSGIGTGAVVGISVAVALVVFTLIGIFVWCVRRREKRLSAVSGGDVTPSPMS 155

Query: 314 SSSTTDSSYIKTQSSAPLIG---SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFA 370
           S++ +DS++ + QSSAP++G   SG    + +  Q  GGLG+S+++F+YEELVKAT+GF+
Sbjct: 156 STARSDSAFFRMQSSAPVVGEKRSGSHQTYFSQSQ-SGGLGNSKALFSYEELVKATNGFS 214

Query: 371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
            +NLLGEGGFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG
Sbjct: 215 QENLLGEGGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVG 274

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +CIS DRRLLIYDYV NN LYFHLHGE + VLDWATRVKIAAGAARGLAYLHEDC
Sbjct: 275 HCISGDRRLLIYDYVSNNDLYFHLHGE-KSVLDWATRVKIAAGAARGLAYLHEDC 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221470|ref|NP_177036.1| protein kinase-like protein [Arabidopsis thaliana] gi|75337798|sp|Q9SX31.1|PERK9_ARATH RecName: Full=Proline-rich receptor-like protein kinase PERK9; AltName: Full=Proline-rich extensin-like receptor kinase 9; Short=AtPERK9 gi|5734709|gb|AAD49974.1|AC008075_7 Contains PF|00069 Eukaryotic protein kinase domain [Arabidopsis thaliana] gi|14334806|gb|AAK59581.1| putative protein kinase [Arabidopsis thaliana] gi|21280865|gb|AAM44925.1| putative protein kinase [Arabidopsis thaliana] gi|332196707|gb|AEE34828.1| protein kinase-like protein [Arabidopsis thaliana]

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 188/228 (82%), Gaps = 4/228 (1%)

Query: 258 SSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSST 317
           +S +N+GIGT   V I+VAV ++ F+L G+ VWCLR+R+K +S ++G  + PSP+ S++ 
Sbjct: 269 NSTNNSGIGTGAVVGISVAVALVVFTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTAR 328

Query: 318 TDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGE 377
           +DS++ + QSSAP +G+   S    S    GGLG+S+++F+YEELVKAT+GF+ +NLLGE
Sbjct: 329 SDSAFFRMQSSAP-VGASKRSGSYQSQ--SGGLGNSKALFSYEELVKATNGFSQENLLGE 385

Query: 378 GGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR 437
           GGFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DR
Sbjct: 386 GGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDR 445

Query: 438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           RLLIYDYV NN LYFHLHGE + VLDWATRVKIAAGAARGLAYLHEDC
Sbjct: 446 RLLIYDYVSNNDLYFHLHGE-KSVLDWATRVKIAAGAARGLAYLHEDC 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567172|ref|XP_003551795.1| PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/318 (53%), Positives = 217/318 (68%), Gaps = 35/318 (11%)

Query: 201 QTPPTPASP--------------------------IAPRPSNSSPNSPPPPSTKRLSPPP 234
           +T P+ ASP                            P  S+   + P PP+ K +   P
Sbjct: 209 KTTPSHASPPSVSETPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASLPDPPTNKTVVGGP 268

Query: 235 GIPVPS------TENTPGNGTNPSSPESSSSPSNN-GIGTAGTVVIAVAVGIIAFSLIGL 287
            + +PS      T     +GTN  S  S+++PS++ G+ T G+V I + VG I  SL+ +
Sbjct: 269 KVSLPSLPTEKPTARPTNDGTNSMS--SNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVM 326

Query: 288 VVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDP 347
            VW  +++KK+ +G  G Y  PSP  SS  + + +++ QS A  +GSG GSDFV SP +P
Sbjct: 327 AVWFAQKKKKKGTGSRGSYAAPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFVYSPSEP 386

Query: 348 GGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE 407
           GG+  SRS FTYEEL++AT+GF+ QNLLGEGGFG VYKG L DGREVA+KQLKIGGGQGE
Sbjct: 387 GGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGE 446

Query: 408 REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR 467
           REF+AEVEIISR+HHRHLVSLVGYCIS+ +RLL+YDYVPN+TL++HLHGE RPVLDW TR
Sbjct: 447 REFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGENRPVLDWPTR 506

Query: 468 VKIAAGAARGLAYLHEDC 485
           VK+AAGAARG+AYLHEDC
Sbjct: 507 VKVAAGAARGIAYLHEDC 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79352581|ref|NP_173940.2| proline-rich extensin-like receptor kinase 10 [Arabidopsis thaliana] gi|310947343|sp|Q9C660.2|PEK10_ARATH RecName: Full=Proline-rich receptor-like protein kinase PERK10; AltName: Full=Proline-rich extensin-like receptor kinase 10; Short=AtPERK10 gi|332192534|gb|AEE30655.1| proline-rich extensin-like receptor kinase 10 [Arabidopsis thaliana]

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 179/217 (82%), Gaps = 1/217 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSS-TTDSSYIKTQSS 328
            V +++ V ++  +LIG+VV CL++RKK +S + G Y+MP+P+ SSS  +DS+ +KTQSS
Sbjct: 330 VVGVSIGVALVLLTLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSS 389

Query: 329 APLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL 388
           APL+G+   +    S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG L
Sbjct: 390 APLVGNRSSNRTYLSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVL 449

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           PD R VA+KQLKIGGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN
Sbjct: 450 PDERVVAVKQLKIGGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNN 509

Query: 449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
            LYFHLH  G P LDWATRVKIAAGAARGLAYLHEDC
Sbjct: 510 NLYFHLHAAGTPGLDWATRVKIAAGAARGLAYLHEDC 546

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101629|ref|XP_002312360.1| predicted protein [Populus trichocarpa] gi|222852180|gb|EEE89727.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 190/239 (79%), Gaps = 5/239 (2%)

Query: 247 NGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVY 306
           N T P+SPESS+S  N GIG  G V I  A+GII   L+GL +WC+R+++KE+SGLNGVY
Sbjct: 249 NNTAPNSPESSNSTGNGGIGIGGIVAIGAAIGIIMLILVGLALWCMRKQRKEISGLNGVY 308

Query: 307 IMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKAT 366
           +MPS LGSS  +   Y K   +   I S    DF+        + +SR +F +EELVKAT
Sbjct: 309 VMPSSLGSSPRS-GIYFKQHFA---ISSLTCYDFLQQYHSY-SISNSRPLFAFEELVKAT 363

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           +GF+ QNLLGEGGFG+VYKGYLPDGR+VA+KQLKIGGGQGEREFKAEVEIISRIHHRHLV
Sbjct: 364 NGFSSQNLLGEGGFGTVYKGYLPDGRDVAVKQLKIGGGQGEREFKAEVEIISRIHHRHLV 423

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           SLVGYCIS+ RRLL+YDYVPNNTL+FHLHG+  P LDWATRVKIAAGAARGLAYLHEDC
Sbjct: 424 SLVGYCISETRRLLVYDYVPNNTLHFHLHGKAMPALDWATRVKIAAGAARGLAYLHEDC 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585933|ref|XP_002533638.1| ATP binding protein, putative [Ricinus communis] gi|223526467|gb|EEF28741.1| ATP binding protein, putative [Ricinus communis]

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 151/256 (58%), Positives = 188/256 (73%), Gaps = 2/256 (0%)

Query: 230 LSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVV 289
           LSP P IP         NGT+ S   +++S    G+ T   V I + VG    SL+ + V
Sbjct: 272 LSPLPSIPTEKPTARATNGTDVSV--NTASAGAGGLNTGSAVAIGIVVGFAVLSLLVMAV 329

Query: 290 WCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGG 349
           W +++RK+     N  Y MPSP  SS  +++ +I+ QS  PL GS  GSDF+ S  +PGG
Sbjct: 330 WFVKKRKRRHDISNIGYTMPSPFASSQNSEALFIRPQSQGPLGGSPSGSDFIYSSSEPGG 389

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           + +S+S FT+ ELV+AT+GF+ +NLLGEGGFG VYKG L DGREVA+KQLKIGG QGERE
Sbjct: 390 VNNSKSWFTFGELVQATNGFSKENLLGEGGFGCVYKGLLVDGREVAVKQLKIGGSQGERE 449

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
           FKAEVEIISRIHHRHLVSLVGYCIS+++RLL+YDYVPN+TL++HLH  G PV+DWA RVK
Sbjct: 450 FKAEVEIISRIHHRHLVSLVGYCISENQRLLVYDYVPNDTLHYHLHAYGMPVMDWAIRVK 509

Query: 470 IAAGAARGLAYLHEDC 485
           IA GAARG+AYLHEDC
Sbjct: 510 IAVGAARGIAYLHEDC 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2028756	762	PERK10 "proline-rich extensin-	0.412	0.266	0.671	2e-72
TAIR|locus:2026925	708	PERK9 "proline-rich extensin-l	0.406	0.282	0.671	2.9e-71
TAIR|locus:2159873	681	PERK8 "proline-rich extensin-l	0.412	0.298	0.6	2.3e-62
TAIR|locus:2139474	670	PERK5 "proline-rich extensin-l	0.306	0.225	0.693	4.2e-56
UNIPROTKB|Q9ARH1	647	Q9ARH1 "Receptor protein kinas	0.317	0.241	0.658	6.8e-56
TAIR|locus:2091722	652	PERK1 "proline-rich extensin-l	0.313	0.236	0.647	4.3e-54
TAIR|locus:2046268	633	PERK4 "proline-rich extensin-l	0.308	0.240	0.625	7.8e-54
TAIR|locus:2026846	710	PERK13 "proline-rich extensin-	0.306	0.212	0.675	4.9e-53
TAIR|locus:2028911	720	PERK12 "proline-rich extensin-	0.284	0.194	0.7	8.3e-51
TAIR|locus:2010282	699	PERK7 "proline-rich extensin-l	0.359	0.253	0.558	7.4e-50

TAIR|locus:2028756 PERK10 "proline-rich extensin-like receptor kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 137/204 (67%), Positives = 165/204 (80%)

Query:   283 SLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGXXX-XXXXXYIKTQSSAPLIGSGPGSDFV 341
             +LIG+VV CL++RKK +S + G Y+MP+P+           +KTQSSAPL+G+   +   
Sbjct:   343 TLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSSAPLVGNRSSNRTY 402

Query:   342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
              S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG LPD R VA+KQLKI
Sbjct:   403 LSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVLPDERVVAVKQLKI 462

Query:   402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV 461
             GGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN LYFHLH  G P 
Sbjct:   463 GGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNNNLYFHLHAAGTPG 522

Query:   462 LDWATRVKIAAGAARGLAYLHEDC 485
             LDWATRVKIAAGAARGLAYLHEDC
Sbjct:   523 LDWATRVKIAAGAARGLAYLHEDC 546

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026925 PERK9 "proline-rich extensin-like receptor kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 137/204 (67%), Positives = 164/204 (80%)

Query:   282 FSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGXXXXXXXXYIKTQSSAPLIGSGPGSDFV 341
             F+L G+ VWCLR+R+K +S ++G  + PSP+         + + QSSAP +G+   S   
Sbjct:   293 FTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTARSDSAFFRMQSSAP-VGASKRSGSY 351

Query:   342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
              S    GGLG+S+++F+YEELVKAT+GF+ +NLLGEGGFG VYKG LPDGR VA+KQLKI
Sbjct:   352 QSQS--GGLGNSKALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGRVVAVKQLKI 409

Query:   402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV 461
             GGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DRRLLIYDYV NN LYFHLHGE + V
Sbjct:   410 GGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDLYFHLHGE-KSV 468

Query:   462 LDWATRVKIAAGAARGLAYLHEDC 485
             LDWATRVKIAAGAARGLAYLHEDC
Sbjct:   469 LDWATRVKIAAGAARGLAYLHEDC 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2159873 PERK8 "proline-rich extensin-like receptor kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 123/205 (60%), Positives = 152/205 (74%)

Query:   283 SLIGLVVWCLRRRKKEVSGLNGVYIMP-SPLGXXXXXXXXYIKTQSSAP-LIGSGPGSDF 340
             SL  + VW  R+RK++  G    Y MP S              ++SSAP  + S  GSD+
Sbjct:   251 SLFVMGVWFTRKRKRKDPGTFVGYTMPPSAYSSPQGSDVVLFNSRSSAPPKMRSHSGSDY 310

Query:   341 VNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLK 400
             + +  D G + + RS F+Y+EL + T GF+++NLLGEGGFG VYKG L DGREVA+KQLK
Sbjct:   311 MYASSDSGMVSNQRSWFSYDELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLK 370

Query:   401 IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP 460
             IGG QGEREFKAEVEIISR+HHRHLV+LVGYCIS+  RLL+YDYVPNNTL++HLH  GRP
Sbjct:   371 IGGSQGEREFKAEVEIISRVHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLHAPGRP 430

Query:   461 VLDWATRVKIAAGAARGLAYLHEDC 485
             V+ W TRV++AAGAARG+AYLHEDC
Sbjct:   431 VMTWETRVRVAAGAARGIAYLHEDC 455

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005199 "structural constituent of cell wall" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2139474 PERK5 "proline-rich extensin-like receptor kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 111/160 (69%), Positives = 130/160 (81%)

Query:   334 SGPGSDFVN--------SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYK 385
             SGP SD  N        SPQ    LGH++S FTY+EL  AT+GFA  NLLG+GGFG V+K
Sbjct:   270 SGPHSDASNLTGRTAIPSPQ-AATLGHNQSTFTYDELSIATEGFAQSNLLGQGGFGYVHK 328

Query:   386 GYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
             G LP G+EVA+K LK+G GQGEREF+AEV+IISR+HHRHLVSLVGYCIS  +RLL+Y+++
Sbjct:   329 GVLPSGKEVAVKSLKLGSGQGEREFQAEVDIISRVHHRHLVSLVGYCISGGQRLLVYEFI 388

Query:   446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             PNNTL FHLHG+GRPVLDW TRVKIA G+ARGLAYLHEDC
Sbjct:   389 PNNTLEFHLHGKGRPVLDWPTRVKIALGSARGLAYLHEDC 428

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

UNIPROTKB|Q9ARH1 Q9ARH1 "Receptor protein kinase PERK1" [Brassica napus (taxid:3708)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 106/161 (65%), Positives = 132/161 (81%)

Query:   330 PLIGSGPGSDF----VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVY 384
             P + S  GSD+    V  P  PG  LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+
Sbjct:   231 PFMSSSGGSDYSDRPVLPPPSPGLVLGFSKSTFTYEELARATNGFSEANLLGQGGFGYVH 290

Query:   385 KGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY 444
             KG LP G+EVA+KQLK+G GQGEREF+AEVEIISR+HHRHLVSLVGYCI+  +RLL+Y++
Sbjct:   291 KGVLPSGKEVAVKQLKVGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGAKRLLVYEF 350

Query:   445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             VPNN L  HLHGEGRP ++W+TR+KIA G+A+GL+YLHEDC
Sbjct:   351 VPNNNLELHLHGEGRPTMEWSTRLKIALGSAKGLSYLHEDC 391

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

TAIR|locus:2091722 PERK1 "proline-rich extensin-like receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 103/159 (64%), Positives = 131/159 (82%)

Query:   332 IGSGPGSDF----VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG 386
             + S  GSD+    V  P  PG  LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+KG
Sbjct:   238 MSSSGGSDYSDLPVLPPPSPGLVLGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKG 297

Query:   387 YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP 446
              LP G+EVA+KQLK G GQGEREF+AEVEIISR+HHRHLVSL+GYC++  +RLL+Y++VP
Sbjct:   298 ILPSGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVP 357

Query:   447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             NN L FHLHG+GRP ++W+TR+KIA G+A+GL+YLHEDC
Sbjct:   358 NNNLEFHLHGKGRPTMEWSTRLKIALGSAKGLSYLHEDC 396

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;ISS;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2046268 PERK4 "proline-rich extensin-like receptor kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 95/152 (62%), Positives = 122/152 (80%)

Query:   334 SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
             SGP    +  P     LG ++S FTY+EL  AT GF D NLLG+GGFG V+KG LP G+E
Sbjct:   249 SGPSRPVLPPPSPALALGFNKSTFTYQELAAATGGFTDANLLGQGGFGYVHKGVLPSGKE 308

Query:   394 VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFH 453
             VA+K LK G GQGEREF+AEV+IISR+HHR+LVSLVGYCI+D +R+L+Y++VPN TL +H
Sbjct:   309 VAVKSLKAGSGQGEREFQAEVDIISRVHHRYLVSLVGYCIADGQRMLVYEFVPNKTLEYH 368

Query:   454 LHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             LHG+  PV++++TR++IA GAA+GLAYLHEDC
Sbjct:   369 LHGKNLPVMEFSTRLRIALGAAKGLAYLHEDC 400

GO:0004672 "protein kinase activity" evidence=IEA;ISS;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2026846 PERK13 "proline-rich extensin-like receptor kinase 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 102/151 (67%), Positives = 120/151 (79%)

Query:   335 GPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREV 394
             G G     S  D   +G  ++ FTYEEL   T+GF+  N+LGEGGFG VYKG L DG+ V
Sbjct:   319 GGGYTRSGSAPDSAVMGSGQTHFTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLV 378

Query:   395 AIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL 454
             A+KQLK+G GQG+REFKAEVEIISR+HHRHLVSLVGYCI+D  RLLIY+YVPN TL  HL
Sbjct:   379 AVKQLKVGSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHL 438

Query:   455 HGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             HG+GRPVL+WA RV+IA G+A+GLAYLHEDC
Sbjct:   439 HGKGRPVLEWARRVRIAIGSAKGLAYLHEDC 469

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2028911 PERK12 "proline-rich extensin-like receptor kinase 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 98/140 (70%), Positives = 115/140 (82%)

Query:   346 DPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ 405
             D   LG  ++ F+YEEL + T GFA +N+LGEGGFG VYKG L DG+ VA+KQLK G GQ
Sbjct:   348 DSAILGSGQTHFSYEELAEITQGFARKNILGEGGFGCVYKGTLQDGKVVAVKQLKAGSGQ 407

Query:   406 GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWA 465
             G+REFKAEVEIISR+HHRHLVSLVGYCISD  RLLIY+YV N TL  HLHG+G PVL+W+
Sbjct:   408 GDREFKAEVEIISRVHHRHLVSLVGYCISDQHRLLIYEYVSNQTLEHHLHGKGLPVLEWS 467

Query:   466 TRVKIAAGAARGLAYLHEDC 485
              RV+IA G+A+GLAYLHEDC
Sbjct:   468 KRVRIAIGSAKGLAYLHEDC 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0032502 "developmental process" evidence=IMP

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2010282 PERK7 "proline-rich extensin-like receptor kinase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 100/179 (55%), Positives = 127/179 (70%)

Query:   308 MPSPLGXXXXXXXXYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
             MPSP           I++   +    SGP +  +  P     LG + S FTYEEL  AT 
Sbjct:   276 MPSP-PAPVSGGANVIQSGEMSSNFSSGPYAPSLPPPHPSVALGFNNSTFTYEELASATQ 334

Query:   368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
             GF+   LLG+GGFG V+KG LP+G+E+A+K LK G GQGEREF+AEVEIISR+HHRHLVS
Sbjct:   335 GFSKDRLLGQGGFGYVHKGILPNGKEIAVKSLKAGSGQGEREFQAEVEIISRVHHRHLVS 394

Query:   428 LVGYCIS-DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             LVGYC +   +RLL+Y+++PN+TL FHLHG+   V+DW TR+KIA G+A+GLAYLHEDC
Sbjct:   395 LVGYCSNAGGQRLLVYEFLPNDTLEFHLHGKSGTVMDWPTRLKIALGSAKGLAYLHEDC 453

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-27
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-26
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-25
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-24
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	9e-24
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-23
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-23
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-22
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	6e-22
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-21
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	7e-20
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-17
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-17
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-16
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-16
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-16
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-16
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-15
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-15
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-15
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-15
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-14
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-14
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-14
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-13
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-13
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-13
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	9e-13
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-12
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-12
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-11
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-11
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-11
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-11
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	8e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-10
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-10
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-10
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-09
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-09
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	3e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-09
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-09
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-09
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-09
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-09
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-08
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-08
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-08
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-08
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-08
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	3e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-08
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	4e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-08
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	7e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	9e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-07
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-07
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	2e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-07
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-07
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	4e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	5e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	6e-07
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	6e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-07
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	7e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	7e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	8e-07
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	8e-07
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	9e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-06
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	1e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	2e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	2e-06
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	2e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	3e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	3e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	3e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-06
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	5e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-06
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	5e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	6e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	7e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	8e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	8e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	8e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	8e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	9e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	1e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	2e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-05
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-05
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-05
COG5099	777	COG5099, COG5099, RNA-binding protein of the Puf f	2e-05
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	2e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-05
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	2e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	3e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	4e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-05
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	4e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	4e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	4e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-05
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-05
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	5e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	5e-05
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	5e-05
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	5e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	5e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	6e-05
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	6e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	6e-05
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	7e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	8e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	8e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	8e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	8e-05
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	8e-05
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	8e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	9e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-05
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	9e-05
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	9e-05
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	9e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	9e-05
PRK13335	356	PRK13335, PRK13335, superantigen-like protein; Rev	9e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	1e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	1e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	1e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	1e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	1e-04
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	1e-04
COG3456	430	COG3456, COG3456, Predicted component of the type	1e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	2e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	2e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	2e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	2e-04
COG3456	430	COG3456, COG3456, Predicted component of the type	2e-04
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	2e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	2e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	2e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	2e-04
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	2e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	3e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	3e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	3e-04
COG5099	777	COG5099, COG5099, RNA-binding protein of the Puf f	3e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	3e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-04
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	3e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-04
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-04
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	4e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	4e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	4e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	4e-04
pfam04388	667	pfam04388, Hamartin, Hamartin protein	4e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	4e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	5e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	5e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	5e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	5e-04
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	5e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	5e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	6e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	6e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	6e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-04
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	7e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	7e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	7e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	7e-04
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	7e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	8e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	8e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	8e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-04
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	8e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	8e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-04
pfam04388	667	pfam04388, Hamartin, Hamartin protein	9e-04
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	9e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	9e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.001
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.001
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.001
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.001
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.001
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.001
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.001
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.001
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.001
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	0.001
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.001
pfam04929	381	pfam04929, Herpes_DNAp_acc, Herpes DNA replication	0.001
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.001
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.001
pfam03353	316	pfam03353, Lin-8, Ras-mediated vulval-induction an	0.001
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.001
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.001
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	0.001
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	0.001
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.002
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
COG5099	777	COG5099, COG5099, RNA-binding protein of the Puf f	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	0.002
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.002
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
COG3456	430	COG3456, COG3456, Predicted component of the type	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.002
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	0.002
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.002
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	0.002
pfam03359	342	pfam03359, GKAP, Guanylate-kinase-associated prote	0.002
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	0.002
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	0.002
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.002
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	0.002
pfam05505	717	pfam05505, Ebola_NP, Ebola nucleoprotein	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.003
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.003
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.003
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.003
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	0.003
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.003
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.003
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.003
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.003
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.003
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.003
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.003
pfam11711	377	pfam11711, Tim54, Inner membrane protein import co	0.003
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	0.003
pfam04995	46	pfam04995, CcmD, Heme exporter protein D (CcmD)	0.003
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.004
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.004
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	0.004
COG3456	430	COG3456, COG3456, Predicted component of the type	0.004
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.004
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.004
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.004
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.004
pfam07267	606	pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid	0.004
COG2112	201	COG2112, COG2112, Predicted Ser/Thr protein kinase	0.004
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.004
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	0.004
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  109 bits (275), Expect = 1e-27
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
           LGEGGFG+VY       G++VAIK +K        E    E+EI+ +++H ++V L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             ++   L+ +Y    +L   L  E    L     ++I      GL YLH 
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLHS 110

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  112 bits (281), Expect = 5e-26
 Identities = 67/252 (26%), Positives = 94/252 (37%), Gaps = 8/252 (3%)

Query: 4    PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
            P P P A  S++P PP       + P   + P   + P  P + P   + P  PP +  P
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT-PGGPARPARPPTTAGP 2766

Query: 64   TSSSPP---ASSPPTSSPPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPPTRSPPPP 118
             + +PP   A+ PP     PA    + S    PSP   + P  +   P +  P  + P  
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 119  SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-- 176
               PP ++ P+ P  PP   PP      ++ P       PP RSP + P     PP    
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 177  SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
            + P  +      A+PP     PP    P P  P    P    P  PPPP  +   P    
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

Query: 237  PVPSTENTPGNG 248
              P+    P   
Sbjct: 2947 TDPAGAGEPSGA 2958

Length = 3151

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  105 bits (264), Expect = 1e-25
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         +VA+K LK G  + ER EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G C   +   ++ +Y+P   L   L   G   L     +++A   A+G+ YL  
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEK-LTLKDLLQMALQIAKGMEYLES 120

Length = 258

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  106 bits (266), Expect = 4e-24
 Identities = 79/281 (28%), Positives = 105/281 (37%), Gaps = 17/281 (6%)

Query: 6    PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
            PGP AA  +SP  P +  P   P  P +    + P  PP +  P    PP+ PA+ PP  
Sbjct: 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782

Query: 66   SSPPASSPPTSSPPPASNPPTSSPPPS----PPASSPPTISPPPPVSNPPTRSPPPPSST 121
             + PA +  + S     +P   + PP+    P A+ PP  SP  P+  P +  P  P   
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842

Query: 122  PPPNSPPSP------PSDPPANSPPPSNP---PSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
            P P  P  P      P       PP  +P   P+    PP   +  P  S  +     PP
Sbjct: 2843 PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902

Query: 173  PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
              P   P   +PP P   P    PP P   PP P  P  P    + P     PS     P
Sbjct: 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

Query: 233  PPGIPVPSTENTPGNGTNPSSPE----SSSSPSNNGIGTAG 269
              G  VP     P       +P     +SS+P   G   + 
Sbjct: 2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =   99 bits (250), Expect = 9e-24
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLKIG-GGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         EVA+K LK     Q   EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G C  ++  +++ +Y+P   L  +L       L  +  +  A   ARG+ YL  
Sbjct: 67  LGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES 121

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 373 NLLGEGGFGSVYKGYLPDG----REVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
             LGEG FG VYKG L        EVA+K LK    + ER +F  E  ++ ++ H ++V 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL-------HGEGRPVLDWATRVKIAAGAARGLAY 480
           L+G C  ++   L+ +Y+    L  +L           +  L     +  A   A+G+ Y
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120

Query: 481 LHE 483
           L  
Sbjct: 121 LAS 123

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         EVA+K LK     Q   EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G C  ++   ++ +Y+    L  Y   +   RP L  +  +  A   ARG+ YL  
Sbjct: 67  LGVCTEEEPLYIVMEYMEGGDLLSYLRKN---RPKLSLSDLLSFALQIARGMEYLES 120

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  100 bits (249), Expect = 6e-22
 Identities = 69/267 (25%), Positives = 98/267 (36%), Gaps = 17/267 (6%)

Query: 2    SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP------- 54
            + PSP PP  ++  PPPP  +P    P P           P     P   S P       
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671

Query: 55   PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
             +  AS+PP      A+ P   S    ++PP   P P P   +  + +P PP      ++
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731

Query: 115  PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P   + P P + P+ P+ P   + P   P +  PP P      P  +P + PP+    P
Sbjct: 2732 SPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP-----APPAAPAAGPPRRLTRP 2786

Query: 175  PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
              +S  ++    P   P     PP     P  A P A  P   +   PPP S +  +PPP
Sbjct: 2787 AVASLSESRESLP--SPWDPADPPAAVLAPAAALPPAASP---AGPLPPPTSAQPTAPPP 2841

Query: 235  GIPVPSTENTPGNGTNPSSPESSSSPS 261
                P      G    P        PS
Sbjct: 2842 PPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

Length = 3151

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 94.5 bits (236), Expect = 6e-22
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           +     LGEG FG VY       G+ VAIK +K    + +RE    E++I+ ++ H ++V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            L      +D+  L+ +Y     L+  L   GR   D A            L YLH 
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEA--RFYLRQILSALEYLHS 115

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 70/244 (28%), Positives = 87/244 (35%), Gaps = 21/244 (8%)

Query: 3    APSPGPPAANSSSPPPPVSNPPTISPPPPVSN---PPKSSPPPPPVSKPPTTSPPPSPPA 59
             P+P PPAA ++ PP  ++ P   S      +   P   + PP  V  P    PP + PA
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825

Query: 60   SN-PPTSSSPPASSPPTSSPPPASNPPTSS----------PPPSPPASSPPTISPPPPVS 108
               PP +S+ P + PP   PPP S P   S          PP   PA+ P   + PP   
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

Query: 109  NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                       S   P   P  P  P A  PP   P    PP P     PP R  P + P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 169  QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
               P            P   A+ P  V  P  + P        P PS  +P S  PP T 
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ-------PAPSREAPASSTPPLTG 2998

Query: 229  RLSP 232
                
Sbjct: 2999 HSLS 3002

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 96.2 bits (239), Expect = 9e-21
 Identities = 67/267 (25%), Positives = 89/267 (33%), Gaps = 11/267 (4%)

Query: 3    APSPGPPAANSSSP--PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            A   G  A  SS P  P   +  PT+     +++PP   P P P +     S  P PP  
Sbjct: 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEP-APHALVSATPLPPGP 2725

Query: 61   NPPTSSSPPASSPPTSSPPPAS--NPPTSSPPPSPPASSPPTISPPP--PVSNPPTRSPP 116
                 +SP   + P     PA    P   + P  PP ++ P    PP  P + PP R   
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

Query: 117  PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP--PSSVEPPKRSPPSVPPQNPPPP 174
            P  ++   +    P    PA+ P     P+   PP   P+   PP  S     P  PP P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

Query: 175  PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            P  S P     AP         PP       PA+P  P     +  +    +     PP 
Sbjct: 2846 PPPSLPLGGSVAPGG--DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Query: 235  GIPVPSTENTPGNGTNPSSPESSSSPS 261
                P     P        P     P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Length = 3151

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 88.8 bits (221), Expect = 7e-20
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFK-----AEVEIISRIHHRHLVSL 428
           LG G FG+VYK      G+ VA+K LK    + E+  K      E+ I+ R+ H ++V L
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKK---RSEKSKKDQTARREIRILRRLSHPNIVRL 63

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +      D   L+ +Y     L+ +L   G   L      KIA    RGL YLH 
Sbjct: 64  IDAFEDKDHLYLVMEYCEGGDLFDYLSRGGP--LSEDEAKKIALQILRGLEYLHS 116

Length = 260

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 92.3 bits (229), Expect = 2e-19
 Identities = 73/288 (25%), Positives = 94/288 (32%), Gaps = 22/288 (7%)

Query: 3    APSPGPPAANS-----SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
            AP P  PA  S      +PP        +        P   SP PP    P    P PSP
Sbjct: 2574 APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSP 2633

Query: 58   PASNPPTSSSPPASSPP----TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             A+ P     P    P       +P   S P  +        +S P   P    + P   
Sbjct: 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

Query: 114  S------PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            S      PPPP  TP P       + P    P P+      P  P +   P   + P+ P
Sbjct: 2694 SLTSLADPPPPPPTPEPAPHALVSATPL--PPGPAAARQASPALPAAPAPPAVPAGPATP 2751

Query: 168  PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
                 P    +      PAP A P +   PP   T P  AS    R S  SP  P  P  
Sbjct: 2752 GGPARPARPPTTAGPPAPAPPAAPAA--GPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

Query: 228  KRLSPPPGIPV---PSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVV 272
              L+P   +P    P+    P     P++P     P    +   G+V 
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 90.0 bits (223), Expect = 9e-19
 Identities = 69/267 (25%), Positives = 95/267 (35%), Gaps = 18/267 (6%)

Query: 23   PPTISPPPPVSNPPKSSPPPPPVSKPPTTSP------PPSPPASNPPTSSSPPASSPPTS 76
            PP + P  P + P +S PPP P  +P   +       P +PP S  P +       P   
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 77   SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP-PTRSPPPPSSTPPPNSPP---SPPS 132
            +PP    P T +P P PP+ SP    P P      P    P     P   S P       
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671

Query: 133  DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP------PKNSPPA 186
                 S PP  P      P   S+      PP  P   P P    S       P  +  A
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731

Query: 187  PIAVPPSNVPPPPTQTPPTPASPIAP--RPSNSSPNSPPPPSTKRLSPPPGIPVPSTENT 244
              A+P +  PP     P TP  P  P   P+ + P +P PP+     PP  +  P+  + 
Sbjct: 2732 SPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

Query: 245  PGNGTNPSSPESSSSPSNNGIGTAGTV 271
              +  +  SP   + P    +  A  +
Sbjct: 2792 SESRESLPSPWDPADPPAAVLAPAAAL 2818

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 69/280 (24%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 3    APSPGPPAANSSSPPP-PVSNP-----------PTISPPPPVSNPPKSSPPPPPVSKPPT 50
             P+  P A + S PPP P   P           P   P       P      P    PP+
Sbjct: 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

Query: 51   TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
              PP +     PP S SP A+ P    PP    P      P+P   S P  +        
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--GRA 2673

Query: 111  PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
               S PP         P        A+ PPP   P   P P       P    P+   Q 
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE--PAPHALVSATPLPPGPAAARQA 2731

Query: 171  PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
             P  P++     +PPA  A P +   P     PPT A P AP P  +    PP     RL
Sbjct: 2732 SPALPAAP----APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR----RL 2783

Query: 231  SPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGT 270
            + P    +  +  +  +  +P+ P ++       +  A +
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 69/283 (24%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 3    APSPGP-PAANSSSPPPPVSNPPTISPPPPVSNP--------------------PKSSPP 41
            AP PG     +  +PP P    P I P  PV  P                        PP
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPP 2554

Query: 42   PPPVSKPPTT--SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             PP + P     S PP  PA  P   +    +  P + P  A           P   +PP
Sbjct: 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP 2614

Query: 100  TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              SP PP ++ P   PPPPS +P  N P   P         P + P+      P      
Sbjct: 2615 --SPLPPDTHAP--DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 160  KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             R+  +  P   P   ++ P   S  +    PP    P P       A+P+ P P+ +  
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 220  NSPPPPSTKRLSPPPGIPV-PSTENTPGNGTNPSSPESSSSPS 261
             SP  P+       P  P  P     P      + P + + P+
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 45/230 (19%), Positives = 73/230 (31%), Gaps = 14/230 (6%)

Query: 1   MSAPSPGPPAANSSSPPP---PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
           M A  PG     +        PV+ P   +  P  + P  ++PP  P +  P  +     
Sbjct: 360 MLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP-AAAPAAAAAARA 418

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            A+ P   S  P +                +P P+P A+      P      P   +   
Sbjct: 419 VAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA 478

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
               P   +P + P+    + PP    P     P P+  +    +P     ++ P P ++
Sbjct: 479 A---PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA---APAGWVAESIPDPATA 532

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            P         A   +  P     T P      APRP  +S +  P    
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVV----APRPPRASASGLPDMFD 578

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 41/222 (18%), Positives = 60/222 (27%), Gaps = 10/222 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNP----PKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P  +   + P   +  P   P P  + P    P  + PP   +  P  +      A+ P 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP--PPVSNPPTRSPPPPSST 121
             S  P +                +P P+P A+      P    P       +  P  + 
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P     P+    PP    PP       P P      P      S+P      P  +    
Sbjct: 485 PAAAPAPADDDPPPWEELPPEFA---SPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
              PA    P +     P    P P    A    +      P
Sbjct: 542 APAPAAAPAPRAAAATEP-VVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 88.1 bits (219), Expect = 2e-18
 Identities = 49/213 (23%), Positives = 70/213 (32%), Gaps = 3/213 (1%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP 79
           V  P   +        P SS PP   ++P   + P +P A  P  +++ PA +    +P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 80  PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP---PA 136
            A+          P AS      P       P   PP P+   P     + P+ P   PA
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 137 NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
            +PP          PP ++      SP +  P   PP P   P     PA    PP+  P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
                  P P+ P                  +R
Sbjct: 767 AAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 86.5 bits (214), Expect = 7e-18
 Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 7/210 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP-PASN 61
           A +P    A +++ P   +  P   P  P + P  ++      + P   SP P    A+ 
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             ++  P  +  P  +P  A  P  ++ P +         +   P    P  +P P    
Sbjct: 438 QASARGPGGAPAPAPAPAAA--PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 122 PPP--NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV--PPQNPPPPPSS 177
           PPP    PP   S  PA              P P++ +P          P   P P  ++
Sbjct: 496 PPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAA 555

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPA 207
           +      P P     S +P       P  A
Sbjct: 556 ATEPVVAPRPPRASASGLPDMFDGDWPALA 585

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 86.1 bits (213), Expect = 8e-18
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 4/198 (2%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           + P    + P      P+P A+ P  ++  PA+ P   +  PA+     +   +P   SP
Sbjct: 372 AGPATAAAAPVAQ---PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP 428

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
              +               P+  P P + P+  + P A  P P    +   P   +    
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 159 PKRSPPSVPP-QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
           P  +    PP +  PP  +S  P     AP      ++P P T  P      +AP P+ +
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548

Query: 218 SPNSPPPPSTKRLSPPPG 235
                   +   ++P P 
Sbjct: 549 PAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 2/218 (0%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
              P P AA    PP P S+ P      P +    ++P  P  +         S   +  
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA--APA 644

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  ++P       + P  +             A + P  +P P     P  + P   +  
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           P  +PP+  +D PA  PP +   ++ P P      P    P   P     P     PP  
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           +P A  A  P   PP   +      +P           
Sbjct: 765 APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 83.4 bits (206), Expect = 7e-17
 Identities = 43/221 (19%), Positives = 66/221 (29%), Gaps = 10/221 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           + P   +  P + P P   +       P +PPA+        PA++        A+ P  
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAA----APAAAAAA--RAVAAAPAR 425

Query: 87  SSPPPSP-PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            SP P    A+   +   P     P       P++   P +    P    A + P    P
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
           +  P P      P +  PP       P P           A     P+   P        
Sbjct: 486 AAAPAPADDDPPPWEELPPEFA---SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542

Query: 206 PASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPG 246
           PA   AP P  ++   P        +   G+P     + P 
Sbjct: 543 PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 4/203 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +A   GPPA  SS PP   + P   + P   + P  +     P       +P  + P  +
Sbjct: 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHH 653

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP---PVSNPPTRSPPPP 118
           P   + P AS      P  A     ++PPP+P  ++P   +      P   P    P   
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 119 SSTPPPNSPPSP-PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
           +  P    P +   +  P+ +     P    P  PP     P + PP   P     P ++
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773

Query: 178 SPPKNSPPAPIAVPPSNVPPPPT 200
            PP                    
Sbjct: 774 PPPSPPSEEEEMAEDDAPSMDDE 796

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 59/276 (21%), Positives = 89/276 (32%), Gaps = 10/276 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSP-PPSPPAS 60
              SP PP  +S  PPPP   P +  P P         P   P   P  + P   + PA+
Sbjct: 102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
               ++S   ++ P SSP   +  P+S P   PP++ P   SP PP  + P  +     +
Sbjct: 162 VASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Query: 121 TPPPNSPPSPPSDPPANSPPP------SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P  S         ++S           P +  P P P+ +  P R   +     P   
Sbjct: 222 PAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSR 281

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP---PPPSTKRLS 231
           P  +   +SP      P  + P          AS  +     SS +S       S     
Sbjct: 282 PGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV 341

Query: 232 PPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGT 267
            P   P  S   +        S        +    +
Sbjct: 342 SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 81.1 bits (200), Expect = 3e-16
 Identities = 45/206 (21%), Positives = 70/206 (33%), Gaps = 12/206 (5%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           + P T+++ P + P  ++  PA+  P  + PP+ PA++P   +    V+  P R  P P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +        +    P     P   P       P ++  P    P  V       P  ++P
Sbjct: 432 ALAAARQ--ASARGPGGAPAPAPAP----AAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 180 PKNSPPAPIAVPPSNVPPP------PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
                PA    PP    PP      P Q    PA  +A    + +   P          P
Sbjct: 486 AAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP 545

Query: 234 PGIPVPSTENTPGNGTNPSSPESSSS 259
              P P           P  P +S+S
Sbjct: 546 AAAPAPRAAAATEPVVAPRPPRASAS 571

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 80.4 bits (198), Expect = 9e-16
 Identities = 56/203 (27%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 2    SAPSPGPPAANSSSPP---PPVSNPPTISPPPPVSNPPKSSPPPPPVS------------ 46
            S   P  P A   +P    PP ++P    PPP  + P    PPP P              
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

Query: 47   -----KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                 +PP+ SP   P A   P        +   S+   A  P     PP P A  PP  
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919

Query: 102  SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
             P PP    P   PPPP    PP +P + P+   A  P  + P   L    P  V  P+ 
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA--GAGEPSGAVPQPWLGALVPGRVAVPRF 2977

Query: 162  SPPSVPPQNPPPPPSSSPPKNSP 184
              P   P    P  S+ P     
Sbjct: 2978 RVPQPAPSREAPASSTPPLTGHS 3000

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 12/139 (8%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +A +     A   +P  P +  P  +P    +  P  +  P   +  P   P  +PPA  
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-- 424

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                  P ++P  ++P  A   P ++P     A +PP  + P  V+ P   +P P  ++
Sbjct: 425 -------PVAAPAAAAPAAA---PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474

Query: 122 PPPNSPPSPPSDPPANSPP 140
             P    +P +     +  
Sbjct: 475 AAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 28/134 (20%), Positives = 36/134 (26%), Gaps = 3/134 (2%)

Query: 78  PPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
            P    P             +S  +           + S PP SS   P+ P  P     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP-PQNPPPPPSSSPPKNSPPAPIAVPPSN 194
            +       PS+     P        +P   P P  PPPPP    P  S   P     S 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 195 VPPPPTQTPPTPAS 208
            P P         +
Sbjct: 267 TPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 57/264 (21%), Positives = 81/264 (30%), Gaps = 8/264 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S    A   SSP      P +    PP S PP ++ P PP    P ++   SP  + 
Sbjct: 165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             +++    +S   SS   +S          P     P   P           P      
Sbjct: 225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP 284

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
              +S P   S  P+    PS+P S   P  P +      S  S          SS    
Sbjct: 285 ASSSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAA 340

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS----SPNSPPPPSTKRLSPPPGIP 237
            SP    +  PS   PPP   P +P     P  + S    S   P     +         
Sbjct: 341 VSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARR 400

Query: 238 VPSTENTPGNGTNPSSPESSSSPS 261
             +T   P     PS  ++ ++  
Sbjct: 401 RDATGRFPAGRPRPSPLDAGAASG 424

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 34/132 (25%), Positives = 42/132 (31%), Gaps = 2/132 (1%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P    P       +    +            P   S + PP+S P  PS P     P S 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP-PPPTQT 202
             S+LPP P S         P  P  NP PPP  + P   P   +    +  P PP    
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPT-NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 203 PPTPASPIAPRP 214
            P P   I    
Sbjct: 267 TPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            +  P     P+ P ++ P  +P    +  P  +  P ++   P +PP+     P  + P
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV-AAP 429

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            +  P+  P   P++V     +    PP    P   + P + +P   +A         P 
Sbjct: 430 AAAAPAAAPAAAPAAV-----ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Query: 201 QTPPTPASP 209
               TP   
Sbjct: 485 AARLTPTEE 493

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           P A+    + +   +     +  PA+ P   +     PA++P   +  P    PP  +PP
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA--PPAAAPP 423

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
            P + P   +P + P+  PA       PP       P +V  P R  P     +  P P+
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPP---AQAAPETVAIPVRVAPEPAVASAAPAPA 480

Query: 177 SSPPKNSPPAPIAVPPSNV 195
           ++P              +V
Sbjct: 481 AAPA---AARLTPTEEGDV 496

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 1/189 (0%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A    P A  + +P    + P   S  P          P        +      P  +  
Sbjct: 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Query: 63  PTSSSPPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              ++PP +  P +   PA   P   +P P+    +     P          +  P  + 
Sbjct: 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
             P   P  P DPP  +  P+ PP    P P ++        P    +      + S   
Sbjct: 736 DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795

Query: 182 NSPPAPIAV 190
                   V
Sbjct: 796 EDRRDAEEV 804

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 25/122 (20%), Positives = 42/122 (34%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           +  P     P       P + P   +     PA+ P  ++S PA+ P  + P P + P  
Sbjct: 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAA 431

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           ++P  +P A+       P P +     +   P    P  +  S    P A        P+
Sbjct: 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491

Query: 147 NL 148
             
Sbjct: 492 EE 493

Length = 618

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 49/229 (21%), Positives = 56/229 (24%), Gaps = 18/229 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P P PP A  S P P       +S     +   +    P     P    P   PP   
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP--- 186

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                   A+ P    P      P   PP   P    P    P P   P     PP    
Sbjct: 187 ------RQAAFPQQGPPEQPPGYP--QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            PP              PPP   P      PP     P   PP   P   P  P      
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP---PPQNQPTPHPGLPQGQNAP 295

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
             PP    + P    P   Q  P        +    S       S +  
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQF----REQLVQLSQQQREALSQEEA 340

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 373 NLLGEGGFGSVYKG-YLPD----GREVAIKQLKI-GGGQGEREFKAEVEIISRIHHRHLV 426
             LGEG FG V    Y P     G +VA+K L   G  Q   +F+ E+EI+  + H ++V
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69

Query: 427 SLVGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
              G C     R   LI +Y+P+ +L  +L    R  ++    +  ++   +G+ YL  
Sbjct: 70  KYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRH-RDQINLKRLLLFSSQICKGMDYLGS 127

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 74.8 bits (184), Expect = 4e-14
 Identities = 57/248 (22%), Positives = 78/248 (31%), Gaps = 8/248 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                 P  +   PP         SP    S+   S     P+S P  T+  PS P + P
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP 193

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPP--------ASSPPTISPPPPVSNPPTRS 114
           P S+ P A+SP         +   SSP P+P         ASS  + S           +
Sbjct: 194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P     P   P         N P     P++    P      P  S P   P    P 
Sbjct: 254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPR 313

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            SSS   +   +  +   S+         P P+   +P PS   P + P    KR  P  
Sbjct: 314 ASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSR 373

Query: 235 GIPVPSTE 242
               P+  
Sbjct: 374 APSSPAAS 381

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 43/266 (16%), Positives = 74/266 (27%), Gaps = 34/266 (12%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +     A++      V+     +  P  +    ++    P + P    PP +    + 
Sbjct: 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA---PPATADRGDD 441

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSP---PASSPPTISPPPPVSNPPTRSPPPPS 119
                 P  +   +     S        P      AS+P + +PP     P  R+  P +
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501

Query: 120 STPPPNSPPSPPSDPPANS--PPPSNPPSNLPPPPPSSVEPPKR---------------- 161
           +TP        P+           + P     PP P++  P  R                
Sbjct: 502 ATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561

Query: 162 --SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S            P+++P     PA         P    Q P   A         +  
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAA--------PRVAVQVPTPRARAATGDAPPNGA 613

Query: 220 NSPPPPSTKRLSPPPGIPVPSTENTP 245
                 +  R +PPP   +P  +  P
Sbjct: 614 ARAEQAAESRGAPPPWEDIPPDDYVP 639

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 31/132 (23%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
            P   PP       +     NS  S P +    +    + P +  P  PS   PP+    
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 165 SVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPP 224
                 PP P   S   ++PP     P +  PPP    PP P     P  S + P  P  
Sbjct: 207 PSDSSLPPAPS--SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 225 PSTKRLSPPPGI 236
            +T        +
Sbjct: 265 SATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 74.1 bits (182), Expect = 9e-14
 Identities = 64/289 (22%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A       A +     P + PP        +N  +S+P     +  P +      P    
Sbjct: 51  AAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPG 110

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P+S  PP  +PP +SPPP+  P  S       +  PP  + PP     P       S   
Sbjct: 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP---AAVASDAA 167

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                  P S P   +  PS+PP+  PP  P +   P+    S P       P+ +P ++
Sbjct: 168 SSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS 227

Query: 183 S------------------------------PPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
           +                               PAPI +P           P +   P + 
Sbjct: 228 AADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS 287

Query: 213 RPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
             S    +  P PS+    P P  P  S+ ++    ++ SS  SSS  S
Sbjct: 288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 1/182 (0%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A    P  A +++ P   S  P      P  +P   + P          +       + 
Sbjct: 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA 680

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP + +P A + P  + P    P  ++ PP+  A  P    P          SP      
Sbjct: 681 PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA-PSPAADDPV 739

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P P  P  PP    A + PP  P       P ++  P   S      ++  P       +
Sbjct: 740 PLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Query: 182 NS 183
           ++
Sbjct: 800 DA 801

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 38/141 (26%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 47  KPPTTSPPPS---PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           + P   PP       A    T+S              + + P SS P  P   SPP    
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            P  S+ P   P P S     ++PP  P  P   SPPP       PPPPP    PP  + 
Sbjct: 206 SPSDSSLP---PAPSS--FQSDTPPPSPESPTNPSPPPGPAA---PPPPPVQQVPPLSTA 257

Query: 164 PSVPPQNPPPPPSSSPPKNSP 184
              PP     P          
Sbjct: 258 KPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 23/142 (16%), Positives = 38/142 (26%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P  P+  P        P +    T+ P +  A     +  PP +S P  +P       TS
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
               +         +     S P   S   P ++         P+       P       
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Query: 148 LPPPPPSSVEPPKRSPPSVPPQ 169
                P  V+    + P    +
Sbjct: 481 WKATNPVEVKKEPVATPKALKK 502

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 15/234 (6%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           P P +      P P+        +  P A + P +   PA  P  ++  P+  +++P   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR-PAAPAAPAAPAAPA--PAGAAAAPAEASAAPAPG 646

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
              P         P           P       PA  PP   P      P   +   P +
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDG--WPAKAGGAAPAAPPPAPAP----AAPAAPAGAAPAQ 700

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
             P+     P         +    A  A  PS     P   PP P  P  P  + + P  
Sbjct: 701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPP 760

Query: 222 PPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAV 275
           PP P       P   P  +   +P +     + + + S  +     A  V + +
Sbjct: 761 PPAP------APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMEL 808

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 6/260 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            AP  G PA  + + P P +          V      +        P   +   +  A  
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP + +PPA++           P  +       A S        P ++  + S P   + 
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P     P+P +  P+ + P + P +  P        P   +PP+ P   PP P +++P  
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA-PEARPPTPAAAAPAA 544

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
            +  A  A+           +     +  A +P+     + P  + K  +P   + VP+ 
Sbjct: 545 RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA-----AAPAAAPKPAAPRVAVQVPTP 599

Query: 242 ENTPGNGTNPSSPESSSSPS 261
                 G  P +  + +  +
Sbjct: 600 RARAATGDAPPNGAARAEQA 619

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 38/136 (27%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           P    P       A    T+S    P   + P  + P     PP+ SP  PS   PP  P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSD---PPSSSPGVPSFPSPPEDP 204

Query: 128 PSP--PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
            SP   S PPA S   S+ P   P  P +   PP  + P  PP    PP S++ P     
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 186 APIAVPPSNVPPPPTQ 201
           +    P   +      
Sbjct: 265 SATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P PP+    + +      S          P +++P    S     P   SPP   + P+ 
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSD 209

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
           S  P  P  S      PPP    PT   PPP    PP  P          +  P+ P ++
Sbjct: 210 SSLPPAP--SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS--TAKPTPPSAS 265

Query: 148 LPPPPPSSVEP 158
             P P   +  
Sbjct: 266 ATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           +P P P    PP S++P AS+  T++P  A  PP +   P PPAS+P      P      
Sbjct: 363 APLPEPEV--PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
                         +  +  S+P A S      P N      +SV P   +    P +  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRA---RPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
                ++ P      P+A P +       +  P  A+ +A 
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

Length = 647

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           F  +  LG G FG V++G   +   VAIK LK      +++F+ EV+ + R+ H+HL+SL
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLHE 483
              C   +   +I + +   +L   L   EG+ VL  A+ + +A   A G+AYL E
Sbjct: 68  FAVCSVGEPVYIITELMEKGSLLAFLRSPEGQ-VLPVASLIDMACQVAEGMAYLEE 122

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 59/266 (22%), Positives = 85/266 (31%), Gaps = 9/266 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P        S S    VS+   ++    V+         PP    P   P    PA+ 
Sbjct: 26  ATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPP--TGPPPGPGTEAPANE 83

Query: 62  PPTSSSP------PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
             ++ +       PAS     SP P        PPP+PP +SPP    P           
Sbjct: 84  SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P P     P +  + P+   +++       +     P  +   P   P   PP  PP   
Sbjct: 144 PGPPPAASPPAAGASPAAVASDAASSR-QAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           S  PP+ S P   +       P  +      AS      S SS     P +   L  P  
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 236 IPVPSTENTPGNGTNPSSPESSSSPS 261
           I +P+          PSS    +S S
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSS 288

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
           A  P  ++   +P     P      P +  P  +P   ++  P  +     +     +PP
Sbjct: 363 AFKPAAAAEAAAPAEKKTPA----RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP 418

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            + PP+ +  P  ++      + P+     P PP  ++P   + P  +A  P+     P 
Sbjct: 419 AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA 478

Query: 201 QTPPTPASPIAPRP 214
                 A+ + P  
Sbjct: 479 PAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 5/135 (3%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P            ++  T +                P   P ++   PS P+     SS 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
             +S PP  S   +  PP S   P+ P+  P   +PPPP          PP ST  P  P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV-----QQVPPLSTAKPTPP 262

Query: 128 PSPPSDPPANSPPPS 142
            +  +  P       
Sbjct: 263 SASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP---PSPPASS 97
             P   K P      +P A+    +++ PA +      P A+    ++PP   P  P ++
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAAPPAPVAA 428

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
           P   +P    +  P      P+        P   + P   +P P+   +   P    +  
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQA--APETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Query: 158 PPKRSPP 164
               +  
Sbjct: 487 RLTPTEE 493

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.5 bits (173), Expect = 8e-13
 Identities = 25/127 (19%), Positives = 44/127 (34%)

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P  ++     +    P+ P A +P  +        P P++      S P+ PP   PP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
            ++P   +P A  A  P+ V   P          +A     +   +    +    + P  
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Query: 236 IPVPSTE 242
             +  TE
Sbjct: 486 ARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.6 bits (173), Expect = 8e-13
 Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 26/273 (9%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           PA      P              V  P   +      S  P  +       +     ++ 
Sbjct: 360 PAVTGGGAPGGGVPA---RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA 416

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
            A++    +PP A  PP ++      A     +                  + PP +S  
Sbjct: 417 AAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS 476

Query: 129 S--PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
           +  P SD P ++     P +  P     +  P  R+P +   ++ P   +   P+  PP 
Sbjct: 477 ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT 536

Query: 187 PIAVPPS------------------NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
           P A  P+                   V           A P A   +      P  P   
Sbjct: 537 PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA---APKPAAPRVA 593

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              P P     + +  P           S    
Sbjct: 594 VQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626

Length = 830

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            +G+G FG V  G Y   G++VA+K LK      +  F AE  +++ + H +LV L+G  
Sbjct: 13  TIGKGEFGDVMLGDYR--GQKVAVKCLKDDSTAAQ-AFLAEASVMTTLRHPNLVQLLGVV 69

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +  +   ++ +Y+   +L  +L   GR V+  A ++  A     G+ YL E
Sbjct: 70  LQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE 120

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 57/250 (22%), Positives = 70/250 (28%), Gaps = 39/250 (15%)

Query: 2   SAPSPGPPAANSSSPPPP-------VSNPPTISPPPPV-SNPPKSSPPPPPVSKPPTTSP 53
              S      ++ SP              P + P P +    PK  P PP   +      
Sbjct: 88  GPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQ 147

Query: 54  PPS-------------PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
            P+                   P    PP    P   PP  +  P   PP  PP      
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGY---- 203

Query: 101 ISPPPPVSNPPTRSPP-----PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
             P PP  +P    P      P  +   P  PP  P  PP    P     S   PPPP  
Sbjct: 204 --PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP-- 259

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
            +PP++      PQ  PPP          P        N P PP Q P        P+  
Sbjct: 260 PQPPQQQQQPPQPQAQPPP---QNQPTPHPGLPQ--GQNAPLPPPQQPQLLPLVQQPQGQ 314

Query: 216 NSSPNSPPPP 225
              P      
Sbjct: 315 QRGPQFREQL 324

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 43/246 (17%), Positives = 68/246 (27%), Gaps = 37/246 (15%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           ++A +    AA   +P    +   T +  PP +       P PP +              
Sbjct: 399 VTAVTGAAGAA--LAPKAAAAAAATRAEAPPAA-------PAPPATADRGDDAADGD--- 446

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             P  +   A +   S        P +       AS+P + +PP     P  R+  P ++
Sbjct: 447 -APVPAKANARASADSRCDERDAQPPADS---GSASAPASDAPPDAAFEPAPRAAAPSAA 502

Query: 121 TPPPNSPPSPPSDPPANS--PPPSNPPSNLPPPPPSSVEPPKR----------------- 161
           TP        P+           + P     PP P++  P  R                 
Sbjct: 503 TPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMR 562

Query: 162 --SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S           P ++      P AP        P     T   P +  A     +  
Sbjct: 563 VSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAES 622

Query: 220 NSPPPP 225
              PPP
Sbjct: 623 RGAPPP 628

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 25/151 (16%), Positives = 36/151 (23%), Gaps = 2/151 (1%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P +  P    PP S+ P AS   T++P     A       PPPP S P      P   T 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTA-AVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 123 PPNSPPSPP-SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                           +    + P+      P +    + +     P      P+     
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
                            P            P
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTP 510

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 12/154 (7%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           P +  P P V         P+  A      ++  A     + PPP ++ P  +P    P 
Sbjct: 361 PAAPLPEPEVPPQSA---APAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           ++   ++    +      +    S       P +     P NS          P P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKS------EPAAASRARPVNSALERLASVR-PAPSALE 470

Query: 156 VEPPKRSPPSVPPQNPP--PPPSSSPPKNSPPAP 187
             P K+        NP        + PK    A 
Sbjct: 471 KAPAKKEAYRWKATNPVEVKKEPVATPKALKKAL 504

Length = 647

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 373 NLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLV 429
            LLG G FGSVY     D G  +A+K +++ G   E     + E+ I+S + H ++V   
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 430 GYCISDDRR-LLIY-DYVPNNTLYFHLHGEGR---PVL-DWATRVKIAAGAARGLAYLHE 483
           G    +++  L I+ +YV   +L   L   G+   PV+  +  ++        GLAYLH 
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQI------LEGLAYLHS 119

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
           P   P    PT+++P    P   +P P++ P  ++    PP       + PPPV      
Sbjct: 362 PVPAPQPAKPTAAAPSPVRP---TPAPSTRPKAAAAANIPPKEPVRETATPPPV------ 412

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
            PP P + P P++P S P    A  P    P    P PP  
Sbjct: 413 -PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 48/242 (19%), Positives = 55/242 (22%), Gaps = 20/242 (8%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
                          SP           S  P       P  S    +  P   PP A  
Sbjct: 86  SVGPDSDLSQKTSTFSP----CQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQA-- 139

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP--SPPSDPPANSPPP 141
                  P P   +   +S     +    R   P    PP    P   PP         P
Sbjct: 140 ---PESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196

Query: 142 SNPPSNLPPPPPSSVEPPK-----RSPPSVPPQNPPPPPSSSPPKN----SPPAPIAVPP 192
              P   P PP    E  +      +P   P Q P PP     P        P      P
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP 256

Query: 193 SNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPS 252
              P PP Q    P     P P N     P  P  +    PP                  
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316

Query: 253 SP 254
            P
Sbjct: 317 GP 318

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 9/157 (5%)

Query: 91  PSPPASSP--PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           P+ P   P  P  S  P  S   T +P    + P   + P PP+  P  +P    P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE--- 417

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                 +     +            P ++S  +    A   +      P   +  P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTP 245
               + +N       P +T    P         E TP
Sbjct: 478 AYRWKATNPVEVKKEPVAT----PKALKKALEHEKTP 510

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
           P A++             P  + P  +      + P+P + P A +  P+ PP+  PP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
            +          + P   P   P++       PAP A         P +  P PA   A 
Sbjct: 426 VA------APAAAAPAAAPAAAPAAVAL---APAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 213 RPSNSSPNSPPPPST 227
               ++P +     T
Sbjct: 477 PAPAAAPAAARLTPT 491

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 42/232 (18%), Positives = 66/232 (28%), Gaps = 24/232 (10%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP     AA + +  PP +  P  +           +P P   +   +         + P
Sbjct: 411 APKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  S   AS+P + +PP A+  P         A+         P +     +P   +   
Sbjct: 471 PADSGS-ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529

Query: 123 PPNSPPSPPSDPPA-----------------------NSPPPSNPPSNLPPPPPSSVEPP 159
           P   PP+P +  PA                            +        P  +     
Sbjct: 530 PEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAA 589

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
            R    VP          +PP  +  A  A      PPP    PP    P++
Sbjct: 590 PRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLS 641

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.1 bits (167), Expect = 5e-12
 Identities = 41/204 (20%), Positives = 60/204 (29%), Gaps = 12/204 (5%)

Query: 59  ASNPPTSSSPPASSPPTS--SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
               P ++       P S   P  A+ P   + P +P A +P   +  P  ++       
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
                 P +      SD     P             P++  P         P    P   
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAK------AGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +  P  +PPA  A  P+  PP   Q     AS  +P   +  P  P P      +  P  
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQG----ASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

Query: 237 PVPSTENTPGNGTNPSSPESSSSP 260
           P P     P      + P S  S 
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.0 bits (167), Expect = 5e-12
 Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 3/146 (2%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPAS-SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           A  P    P P   P +++P  S  A+ +P     PP     P      P   P    P 
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           +      A         +        +     R   S   +     P+ S  + +P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 189 AVP--PSNVPPPPTQTPPTPASPIAP 212
           A     +N      +   TP +    
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKA 503

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P+    AA +++P    +  P  +  P  +      P  PP + PP    P + PA+ 
Sbjct: 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA---PAAPPAAAPP---APVAAPAAA 432

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P        + P ++P   +  P      +P   + P    P P     + +P P ++ 
Sbjct: 433 APA-------AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP--AVASAAPAPAAAP 483

Query: 122 PPPNSPPSPPSD 133
                 P+   D
Sbjct: 484 AAARLTPTEEGD 495

Length = 618

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 18/120 (15%)

Query: 375 LGEGGFGSVYKGY-LPDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG  +P+G      VAIK L+     +  +E   E  +++ + H H+V L
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGE-----GRPVLDWATRVKIAAGAARGLAYLHE 483
           +G C+S  +  LI   +P   L  ++         + +L+W  ++      A+G++YL E
Sbjct: 75  LGICLS-SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYLEE 127

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 19/126 (15%)

Query: 375 LGEGGFGSVYKGYL----PDGRE--VAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LGEG FG V+ G      P+  +  VA+K LK       R+ F+ E E+++   H ++V 
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTL--YFHLHG--------EGRPV--LDWATRVKIAAGAA 475
             G C   D  +++++Y+ +  L  +   HG           P+  L  +  ++IA   A
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIA 132

Query: 476 RGLAYL 481
            G+ YL
Sbjct: 133 SGMVYL 138

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  + R+VAIK ++  G   E +F  E +++ ++ H  LV L G C  
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-EGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+++++ +  L  +L  + R      T + +      G+AYL    
Sbjct: 71  RSPICLVFEFMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLESSN 120

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
             A      +      A++ P  +P P  + P   + P P++ P P   P+P   PP+ +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
                  +  PPP  +    P           P P  +  P     PAP A P     P 
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPA----------PAPAAAPEPTAAPAPAPPAAPAPAAAPA 495

Query: 199 PTQTPPTPASP 209
               P  PA  
Sbjct: 496 APAAPAAPAGA 506

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 28/124 (22%), Positives = 40/124 (32%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P    P           +              +  + S P SS P   + P+    PS P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
           + S    +P    S+ P  SP  P++  PP  P +PP  P    PP S      P    +
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 155 SVEP 158
               
Sbjct: 268 PAPI 271

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
             P +A+ S PP      P+   PP   + P  S  PP  S   + +PPPSP     PT+
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE---SPTN 233

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
            SPP        PP    PP S+  P+PP++S           + 
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 31/131 (23%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 30  PPVSNPPK--------SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPA 81
            P   PP          +      S P   + P S   S+PP+SS    S P     P +
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
            +  +  P PS   S  P  SP  P +NP     P     PP    P   +  P      
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESP-TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 142 SNPPSNLPPPP 152
           + P        
Sbjct: 266 ATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 29/159 (18%), Positives = 44/159 (27%), Gaps = 6/159 (3%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
              P P  P     S  P  S   T +P   V+ P   + PPPP S P      P P  +
Sbjct: 363 APLPEPEVPPQ---SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           +   ++         ++    S P  +S    P  S+   ++   P   P      P   
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRAR-PVNSALERLASVRPA--PSALEKAPAKK 476

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
                   +P          P      L       +   
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 17/122 (13%)

Query: 375 LGEGGFGSVYKGY--LPDGRE--VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLV 429
           LG G FGSV KG   +  G+E  VA+K LK      G++EF  E  +++++ H  +V L+
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGR-PVLD---WATRVKIAAGAARGLAYLHEDC 485
           G C   +  +L+ +  P   L  +L      PV D    A +V      A G+AYL E  
Sbjct: 63  GVCKG-EPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQV------AMGMAYL-ESK 114

Query: 486 KY 487
            +
Sbjct: 115 HF 116

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V++G   +   VA+K LK G    + +F AE +I+ ++ H  L+ L   C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPK-DFLAEAQIMKKLRHPKLIQLYAVCTL 72

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++   ++ + +   +L  +L G     L     + +AA  A G+AYL  
Sbjct: 73  EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA 121

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 56/240 (23%), Positives = 73/240 (30%), Gaps = 24/240 (10%)

Query: 42   PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP----------- 90
            P     P      P P    PP   +PPA S    +  P         P           
Sbjct: 2483 PAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEE 2542

Query: 91   -PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP-PSNPPSNL 148
              S  A  PP   PP      P RS PPP   P P+ P         ++PP  + P + +
Sbjct: 2543 LASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV 2602

Query: 149  PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                      P    P       PPPPS SP  N P            PPP +    PA 
Sbjct: 2603 DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT----VPPPERPRDDPAP 2658

Query: 209  PIAPRPSNSS-------PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
                RP  +         +SPP    +R + P    + S  + P     P     +   +
Sbjct: 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718

Length = 3151

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.9 bits (159), Expect = 4e-11
 Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 13/167 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +AP P P     S+ P   +   T +P   V+ P   + PPPP S P   +P    P   
Sbjct: 362 AAPLPEPEVPPQSAAPAASA-QATAAPTAAVAPPQAPAVPPPPASAPQQ-APAVPLP--- 416

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             TS    A      +        +     S        +     V   P+     P+  
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                  + P +               P     ++E  K +P     
Sbjct: 477 EAYRWKATNPVEVKKEPVAT-------PKALKKALEHEK-TPELAAK 515

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             +  A  P  ++   A++ P ++P PA+  P ++  P+P A+  P  +P          
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAP---------- 435

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P P+   P  + P+  +  P  +  PS  P+  P   P     P  +PP+ P     P
Sbjct: 436 -APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Query: 174 PPSSSPPKNSPPAPIAVP 191
              ++P   +     A  
Sbjct: 495 AAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 35/128 (27%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A      + NS           + S PP  S    S P PP     P+ S  P  P+   
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPS--S 218

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
             S +PP S    ++P        S PP       PP    PP  +  PT  PP  S+TP
Sbjct: 219 FQSDTPPPSPESPTNP--------SPPPGPAAPPPPPVQQVPPLSTAKPT--PPSASATP 268

Query: 123 PPNSPPSP 130
            P    + 
Sbjct: 269 APIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLP-----PPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            PN  P    +        +N  ++ P     P   S  +PP  SP      +PP  PSS
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
               + PPAP +      PP P         P    P        PP ST + +PP    
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 238 VPSTENTPGN 247
            P+       
Sbjct: 267 TPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 38/244 (15%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP----PPPPVSKPPTTSPPPSP 57
           +A    P  A +++     S        PP  +   S+P    PP    +P   +  PS 
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT----------------- 100
                   +  PA++    +P  A+ P   + PP+P A++P                   
Sbjct: 502 ATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561

Query: 101 --------------ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS-PPPSNPP 145
                              P + P   +P      P P +  +    PP  +        
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAE 621

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP--APIAVPPSNVPPPPTQTP 203
           S   PPP   + P    P S       P     P  +S P    +A  P++ P PP  T 
Sbjct: 622 SRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTR 681

Query: 204 PTPA 207
           P P 
Sbjct: 682 PLPP 685

Length = 830

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 63.8 bits (155), Expect = 8e-11
 Identities = 55/219 (25%), Positives = 76/219 (34%), Gaps = 13/219 (5%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
           P+   PP  S+      P P     P     PSPP    P         P +        
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPE---APSPPIEEEPPQPKAVVPRPLSPYTAYEDL 380

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
            P +SP P+PP+SSP +      V+ P       PS     N P   P+   A    P +
Sbjct: 381 KPPTSPIPTPPSSSPASSKSVDAVAKPAE-PDVVPSPGSASNVPEVEPAQVEAKKTRPLS 439

Query: 144 P---------PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P         P++  P  P+ V P   S  SVP      P +++    +PP     P S 
Sbjct: 440 PYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP 499

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
                   PPT  SP AP    +  ++         +PP
Sbjct: 500 YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPP 538

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
               G   A +++ P   +  P  +P P  + P  ++ P P  +  P  +P P+P    P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA---P 441

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P+ +    +    S PP A+     +P P+         +P PP +  P  +P  P++  
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 123 PPNSP 127
            P   
Sbjct: 502 APAGA 506

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
             P P    P ++ P P    P  ++ P +  A+N P       ++ P   PP    PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              P S P  +   I    PV   P  +PP P
Sbjct: 422 PHTPESAPKLTRAAI----PVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 21/128 (16%)

Query: 375 LGEGGFGSVYKGYL--PDGRE----VAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LGEG FG VYKG L  P+ R     VAIK LK     + ++EF+ E E++S + H ++V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL--------------HGEGRPVLDWATRVKIAAG 473
           L+G C  +    ++++Y+ +  L+  L                  +  LD +  + IA  
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQ 132

Query: 474 AARGLAYL 481
            A G+ YL
Sbjct: 133 IAAGMEYL 140

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 41/201 (20%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSP-PASNPPTSSSPPASSPPTSSPPPASNPPTSSPP-PSP 93
           P +  P PP      TS P  P P   P      P +       P     PT+ P  P+ 
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149

Query: 94  PASSPPTISPPPPVSNPP--TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
                P   P           R   PP +     +  +P  +          P  +    
Sbjct: 150 QQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRR 209

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
                 P    P       P PPP +       P P     + V P     P        
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAP-------G 262

Query: 212 PRPSNSSPNSPPPPSTKRLSP 232
           P  +  +P   P   T RL+P
Sbjct: 263 PLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 25/127 (19%), Positives = 45/127 (35%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
            P          +P  +P  +    +++   +      P PA  P  + P P+  A +  
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
             SPPP  +     +P P ++  P  +P   P   PA +  P+ P +   P         
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Query: 160 KRSPPSV 166
           +   P +
Sbjct: 513 RERWPEI 519

Length = 824

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 13/124 (10%)

Query: 373 NLLGEGGFGSVYKG----YLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRH 424
           N LG G FG VY+G     L  G     VA+K L+ G    E+ EF  E  ++S  +H +
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGE-----GRPVLDWATRVKIAAGAARGLA 479
           +V L+G C+ ++ + +I + +    L  +L        G P+L     + I    A+G  
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV 120

Query: 480 YLHE 483
           YL +
Sbjct: 121 YLEQ 124

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 14/83 (16%), Positives = 30/83 (36%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P  +   +    +++  AS+P  +    A   P  +PP +   ++PP  +     +  P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 112 TRSPPPPSSTPPPNSPPSPPSDP 134
              P   ++  P  +       P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                  +P A+ P  +++ PA++P  ++  PA+    +      PA +P     PP  +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                   P  S PP  +P + P+  PA +P P+  P+  PP  P+    P        P
Sbjct: 446 GNAPAGGAP--SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 169 QNPPP 173
                
Sbjct: 504 AGADD 508

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 30/82 (36%), Positives = 41/82 (50%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           ++   ++PPPP  +PPP +P  P   P A +PPP+ PP        SS  P +    S P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 168 PQNPPPPPSSSPPKNSPPAPIA 189
           P   P  P+ SP K+S P  I 
Sbjct: 577 PPPIPEEPTPSPTKDSSPEEID 598

Length = 620

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
           + ++G G FG V +G L  P  +E  VAIK LK G    +R +F  E  I+ +  H +++
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHL-HGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
            L G        ++I +Y+ N +L   L   +G+        V +  G A G+ YL E  
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFLRENDGK--FTVGQLVGMLRGIASGMKYLSEMN 126

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 15  SPPPPVSNPPTISPPPPVS-NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             P P    PT + P PV   P  S+ P    +       P    A+ PP    P A   
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
           P +          + P    P  +PP    PP 
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPP---APPK 451

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P P   P   +   PS   P  +P + P    A + PP  P      PPP    P     
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           P  P   P    ++ P       P   PP    PP  +
Sbjct: 422 PHTPESAPKLTRAAIP---VDEKPKYTPP---APPKEE 453

Length = 585

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 375 LGEGGFGSVY----KGYLPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V     K     G+  A+K LK   I   +       E  I+SRI+H  +V 
Sbjct: 1   LGKGSFGKVLLVRKKD---TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVK 57

Query: 428 LVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVK-IAAGAARGLAYLHE 483
           L  Y    + +L L+ +Y P   L+ HL  EGR       R +  AA     L YLH 
Sbjct: 58  LH-YAFQTEEKLYLVLEYAPGGELFSHLSKEGR--FS-EERARFYAAEIVLALEYLHS 111

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 33/193 (17%), Positives = 47/193 (24%), Gaps = 8/193 (4%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
              P P +      P P+          P  P + P   + P P+      +  S    P
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAA-PAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 135 PANSPPPSNPPSNLPPPP-PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
              +P        +P         P K    +     P P P++             P  
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 194 NVPPPPTQ------TPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGN 247
              PP  Q       PP  A   +     +    P PP       P G P          
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Query: 248 GTNPSSPESSSSP 260
                +     SP
Sbjct: 766 PAAAPAAAPPPSP 778

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
             P +  P ++   P  +  P  + P +  A  P  +  P  +  P  +PP  +    + 
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAG 451

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             PSPP ++ P+  P P  +  P  +  P  + PP    P+     PA    P+     
Sbjct: 452 GAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA-PPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F     +G+GGFG VYK  +   G+EVAIK +K+   + + +   E++I+ +  H ++V 
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             G  +  D   ++ ++    +L   L    +  L  +    +     +GL YLH 
Sbjct: 62  YYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQT-LTESQIAYVCKELLKGLEYLHS 116

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                      P  + PA+ P     P A++  + SP  +S       P +P +++ P  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQ----PSAAAAASPSPSQSSAAA---QPSAPQSATQPAG 422

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           +PP    +PP   P  P ST P    P+          P S   S  P     S   P +
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQF--KEEKKIPVSKVSSLGP-----STLRPIQ 475

Query: 162 SPPSVPPQNPPPPPSSSPPK 181
                   N    P+ +  +
Sbjct: 476 EKAEQATGNIKEAPTGTQKE 495

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                     S   + PA+ P  +++ PA++      P A+  P   P P+P  + P   
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA--PAPAAAPQPA--PAPAPAPAPPSPA 445

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              P    P       PS+ P P    +P         PP+ P     P  P++   P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 2/127 (1%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
               A  +  P   +     + P     P  ++P       P     P   PA  P  + 
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA--PAPAP 441

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
             PA + P    P        S  P+P  ++ P  +  P  + P   +P    + P   +
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 127 PPSPPSD 133
            P+   D
Sbjct: 502 APAGADD 508

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P+P P    +++P P    P   + P        + PP  PV +  T  P P  P + 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAA--AAANIPPKEPVRETATPPPVPPRPVA- 418

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           PP   +P ++   T +  P    P  +PP  P  
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
            P +++ PT +     +     +  P +  P   +P  P +  PA  P P+         
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA-----AAA 91

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
             ++   P  +  +  P         +P +    A +A
Sbjct: 92  AAAAPAAPPAAAAAAAPAAAAVEDEVTPLR-GAAAAVA 128

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
            K    S    P     P  + P A+  P+++   + +P  SS    P A        P 
Sbjct: 364 QKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSA--------PQ 415

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP--SSVEPPKRSP 163
             + P     PP  S  PP + P  P      +  P+        P    SS+ P    P
Sbjct: 416 SATQPAGT--PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
            +G+G FG VYKG L    EVA+K  +       +  F  E EI+ +  H ++V L+G C
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +      ++ + VP  +L   L  +    L     ++++  AA G+ YL    
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKKKNR-LTVKKLLQMSLDAAAGMEYLESKN 113

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
                ++P  ++   A+     +  P+  A + P  +PP         +PP P++     
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAA 93

Query: 126 SPPSPPSDPPANSPPPSNPP 145
           + P+ P    A + P +   
Sbjct: 94  AAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 19/126 (15%)

Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP+  +  VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHGEGRPVLDWATRV-----------KIAAGAA 475
            G C      L++++Y+ +  L  +   HG    +L     V            IA+  A
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIA 132

Query: 476 RGLAYL 481
            G+ YL
Sbjct: 133 SGMVYL 138

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 39/166 (23%), Positives = 45/166 (27%), Gaps = 8/166 (4%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP---PPPPVSKPPTTSPPPSP 57
           +    P   AA     PP     P   P PP  +P +  P    P P   P     PP  
Sbjct: 180 LPQGMPPRQAAFPQQGPPE---QPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL 236

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP--TISPPPPVSNPPTRSP 115
           P   PP              PPP   P     PP P A  PP    +P P +        
Sbjct: 237 PQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           PPP           P                +       S E  KR
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKR 342

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 41/202 (20%), Positives = 58/202 (28%), Gaps = 16/202 (7%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           PS G PA     P    ++ P +  P     P +    P    +PP        P + P 
Sbjct: 90  PSAGEPAPPP--PHARRTSEPELPRPGR--RPYEGYGGPRADDRPPGLPRQDQLPTARP- 144

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP--PPPSST 121
              + PA       P                   PP      P S  P +     P  + 
Sbjct: 145 ---AYPAYQQR-PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAG 200

Query: 122 PPPNSPPSPPSDPPA-NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
            P         D P  +   P    ++ P PPP +    +  P      + P  P     
Sbjct: 201 RPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPS- 259

Query: 181 KNSPPAPIAVPPSNVPPPPTQT 202
               P P+A  P+  P P   T
Sbjct: 260 ---APGPLAAQPAPAPGPGEPT 278

Length = 617

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 58.9 bits (142), Expect = 4e-09
 Identities = 50/232 (21%), Positives = 74/232 (31%), Gaps = 8/232 (3%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPP-PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
           P  P+   P    P   +     +P  PP V   P               S +   +  P
Sbjct: 627 PLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLP 686

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
               P    PP  +P P  P ++PP  +  P  +    R P        P +     + P
Sbjct: 687 IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP-------PSSSPPKNSPPAP 187
           PA +P  + PP+  P         P    P  PPQ PP P       P+  PP  + P  
Sbjct: 747 PAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTS 806

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
           + + P   P     T       +        P+   P + +R +     P P
Sbjct: 807 MQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSP 858

Length = 991

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 63/228 (27%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           ++K P+   PP    +     +  P   P     P A +PP    PP P A  P  +SP 
Sbjct: 320 LAKIPSQRVPPKESDA-----ADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPY 374

Query: 105 PPVSN--PPTRSPPPPSSTPPPNSPPSPPSDPPA--NSPPPSNPPSNLPPPPPSSVEPPK 160
               +  PPT   P P S+ P +S        PA  +  P     SN+P   P+ VE  K
Sbjct: 375 TAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKK 434

Query: 161 RSP--PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA-PRPSNS 217
             P  P    ++  PP S SP   +  +P     S+VP  P   P T A+  A P P+N 
Sbjct: 435 TRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANM 494

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGI 265
            P SP         P    P         + TN      +S+P     
Sbjct: 495 RPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 25/121 (20%), Positives = 39/121 (32%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
                     +  P ++   P + P+P +  PA +  P+   +  P P P+    P    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            + P    P PP ++ P   P    A  P     P    P  PA   AP    +      
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505

Query: 224 P 224
            
Sbjct: 506 A 506

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
              P P    PT++ P     +  P+  P    +       P   +  PP  PP P + P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
               P        L        E PK +PP+ P +
Sbjct: 421 V---PHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 19/128 (14%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP--PSPPASNPPTSSSPPASSPPTSS 77
           V N   ++P P  S   K   P P + +P     P  P  P + P    SP ++  P   
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ 433

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPP--------------VSNPPTRSPPPPSSTPP 123
           PP A + P    PPSP AS+P  ++   P                N   + P   SS+  
Sbjct: 434 PPVARSAPL---PPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDA 490

Query: 124 PNSPPSPP 131
             +     
Sbjct: 491 AQTGVFEG 498

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
           P ++  PT++   +  A+S P  +P       P  +PP       P +PP P +   A +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAAA 94

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSP 163
            P + P +     P ++    + +P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 26/98 (26%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P P    P  + PSP    PA S  P    +   PP     E     P    P  PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           P     P+++P    A  P +  P  T   P      A
Sbjct: 422 PH---TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 14/82 (17%), Positives = 30/82 (36%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P S    +++  A++   S+P  A      + P   P ++    +PP P +     + P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 118 PSSTPPPNSPPSPPSDPPANSP 139
                   + P+  +     +P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 57.8 bits (139), Expect = 9e-09
 Identities = 63/236 (26%), Positives = 85/236 (36%), Gaps = 4/236 (1%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           PGPP  ++    P     P+ +PP P        PP P  S+    S  P   ++  P  
Sbjct: 271 PGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQ 330

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPAS--SPPTISPPPPVSNPPTRSPPPPSSTPP 123
                  PP  S P    PPT+  P  P  S   PP +  P P    P+  PPPP+  P 
Sbjct: 331 PPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPL 390

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
            + P   P  P A+ PP    P + P     +  P      S+PP+    P S       
Sbjct: 391 SSLPTHHP--PSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPP 448

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
                  P ++   P    PP+  +     P  +S  S PP S    S     P P
Sbjct: 449 QSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGP 504

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 62/243 (25%), Positives = 87/243 (35%), Gaps = 19/243 (7%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPP-------VSKPPTTSPPP 55
           AP+P P     +   P  +   T  PPPP +  P  +  PP           P     PP
Sbjct: 254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPP 313

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
            PP   P   +                  P    P   P    PT +PP  + +      
Sbjct: 314 DPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRH 373

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
            P  ++ P     S      A +P    P  +    P + V      P SVP   P P P
Sbjct: 374 HPKRASLPTRKRRSARH---AATPFARGPGGDDQTRPAAPV------PASVPTPAPTPVP 424

Query: 176 SSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPASPIA-PRPSNSSPNSPPPPSTKRLSP 232
           +S+PP  + P P A P S+    PPP + PP PA+  A   P +++  +      +R   
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484

Query: 233 PPG 235
           PPG
Sbjct: 485 PPG 487

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
              P P P   +    SP  P   P TR     ++  PP  P    + PP   P P  PP
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
                P  +        P    P+  PP P
Sbjct: 421 VP-HTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP-PSPPASSPPT 100
           P   + P   +   +  AS P  + +  A + P  +PP A+ P     P  +  A++ P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 101 ISPPPPVSNPPTRSPPPPSSTP 122
             P    +  P  +      TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 17/78 (21%), Positives = 34/78 (43%)

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
            P +T+ P +  A+    +S+P A+    +   PA  PP ++ P +PP  +    +   P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 107 VSNPPTRSPPPPSSTPPP 124
            + P   +   P++    
Sbjct: 97  AAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 35/77 (45%)

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           P S+   ++   A+    S+P  +P A +P   +P PP +  P   P P ++     +P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 129 SPPSDPPANSPPPSNPP 145
           +PP+   A +P  +   
Sbjct: 98  APPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 34/79 (43%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
            +   S    AS+P   +P P  +PP +   PS P +     +P PP +      P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 120 STPPPNSPPSPPSDPPANS 138
            T P  +PP+  ++ P + 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS-PPSPPSDPPANSPPPSNP 144
            +S    P     P  + P   + P   +    S +P  +S    P +   A  P  + P
Sbjct: 368 DASGGRGPKQHIKPVFTQP--AAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
             ++ PP    V PP  +P +V P            K S   P
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468

Length = 614

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+        P+  +  VA+K LK       ++F  E E+++ + H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG-------EGRPV--LDWATRVKIAAGAARG 477
            G C+  D  +++++Y+ +  L  +   HG       EG     L  +  + IA   A G
Sbjct: 73  YGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAG 132

Query: 478 LAYL 481
           + YL
Sbjct: 133 MVYL 136

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 372 QNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           ++ LG G +G VY+G        VA+K LK    + E EF  E  ++  I H +LV L+G
Sbjct: 11  KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLG 69

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            C  +    +I +++    L  +L    R  ++    + +A   +  + YL
Sbjct: 70  VCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYL 120

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 374 LLGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
            LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V  
Sbjct: 11  QLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKY 70

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            G C S  RR   L+ +Y+P  +L  +L  + R  LD    +  A+   +G+ YL
Sbjct: 71  KGVCYSAGRRNLRLVMEYLPYGSLRDYLQ-KHRERLDHRKLLLYASQICKGMEYL 124

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 47/208 (22%), Positives = 64/208 (30%), Gaps = 7/208 (3%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            ++ P+      + + PP     PP    PPP    P+  PPP P   PP    P  P A 
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 61   NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
                + +   S         A  P   + P        P+   P   + P T       S
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005

Query: 121  TPPPNSPPSPPSDPPANS------PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            +   +      +DPP  S      PP     S+      S  E          P  P  P
Sbjct: 3006 SWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP 3065

Query: 175  PSSSPPKNSPPA-PIAVPPSNVPPPPTQ 201
             +  P   +P A     P S   PPP  
Sbjct: 3066 FAHEPDPATPEAGARESPSSQFGPPPLS 3093

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 24/111 (21%), Positives = 42/111 (37%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +APS    A  ++  P   +     +P P  +  P  +P P P    P  + P     S 
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
           PP ++     +P  ++ P  +  P  +PP +P  ++ P     P       
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 40/186 (21%), Positives = 58/186 (31%), Gaps = 2/186 (1%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           P PPA+    +    + S        A     +    +  A+      P  P   P T +
Sbjct: 22  PRPPATPGDAADDLLSGSQGQLVSDSA--ELAAVTVVAGAAACDRFEPPTGPPPGPGTEA 79

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           P   S + P  S  +     PA    P+ P  + P PPP +  P    P   P  +    
Sbjct: 80  PANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLR 139

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
           P  SP      +P A   S             A+     P  ++     PP+    S PP
Sbjct: 140 PVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199

Query: 235 GIPVPS 240
               P 
Sbjct: 200 AAASPR 205

Length = 1352

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 13/82 (15%), Positives = 30/82 (36%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P   + P   +     +    ++ P       P  +PP +   + PP  ++  A++   +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 77  SPPPASNPPTSSPPPSPPASSP 98
           +PP A+     +        +P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
            PG  AA +++     +     +  P    P   +P PP        +PP    A+    
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA--AAAPAAPPKPAAAAAAAA 94

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           + + P ++   ++P  A+     +P     A
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 65/239 (27%), Positives = 85/239 (35%), Gaps = 16/239 (6%)

Query: 1   MSAPSPGPPAANSSSPPPP----VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPS 56
           + AP  GP      + P       S P     P PV +P ++  PP   S  P TS P  
Sbjct: 564 LPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQ 623

Query: 57  PPASNPPTSSSP----PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
            P    P    P    P +      P P   P     P  P  +    I   P  +   T
Sbjct: 624 WPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANT 683

Query: 113 RSPP---PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             P    P +  PPP +P   P  PPA  P  +  P+            P R+ P     
Sbjct: 684 MLPIQWAPGTMQPPPRAPT--PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAP 741

Query: 170 NPPPPPSSSPPKNSPPAPI---AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPP 225
               PP+++P +  PPA     A PP+  P  PT  PP  A P   +    +P   PPP
Sbjct: 742 GRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800

Length = 991

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGG-GQGEREF-KAEVEIISRIHHRHL 425
           +     +G+G FG VY      DG+   +K++ +    + ERE    EV+I+ +++H ++
Sbjct: 2   YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNI 61

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLH---GEGRP-----VLDWATRVKIAAGAARG 477
           +          +  ++ +Y     L   +     EG+P     +LDW  ++ +A      
Sbjct: 62  IKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLA------ 115

Query: 478 LAYLHE 483
           L YLH 
Sbjct: 116 LKYLHS 121

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 55.9 bits (133), Expect = 2e-08
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHR 423
            +     LGEG FG VY     D + VA+K L        +    F  E++I++ + H  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP-VLDWATRVKIAAGAARGLAYLH 482
           ++V L  +   +    L+ +YV   +L   L   GR   L  +  + I A     L YLH
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH 118

Query: 483 E 483
            
Sbjct: 119 S 119

Length = 384

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 372 QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSL 428
            +L+G G FG VYKG  L  G  VAIKQ+ +   + E  +    E++++  + H ++V  
Sbjct: 5   GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKY 64

Query: 429 VGYCISDDRRLLIYDYVPNNTLY-----FHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G   + D   +I +Y  N +L      F    E   V  +  +V       +GLAYLHE
Sbjct: 65  IGSIETSDSLYIILEYAENGSLRQIIKKFGPFPE-SLVAVYVYQV------LQGLAYLHE 117

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 5/150 (3%)

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
           P++S         +     R      +  P  + PS  +  PA +P P+       P   
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAA----PAAA 420

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
           ++  P     P+  P   P PPS +    +  AP   PP+  P       P  A      
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP-PPAAAPSAQPAPAPAAAPEPTAA 479

Query: 214 PSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
           P+ + P +P P +       P  P  + + 
Sbjct: 480 PAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 17/121 (14%), Positives = 36/121 (29%)

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P+       P    +   P+ + P+  P        +     +  A     P    PP  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 201 QTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
              P  A+P A   +  +  +  P    + +P            P   +   +P ++ + 
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Query: 261 S 261
           +
Sbjct: 486 A 486

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 29/88 (32%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S   P  P+       P  S+ P          PP S   P   S PP  + PP PP   
Sbjct: 191 SPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSP 89
            P  S+   + P  S+ P      T   
Sbjct: 251 VPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S+  P +    ++   S PA++P   +P  P   P   +   P++ P P +  +  + 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA--PAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 134 PPANSPPPSNPPSNLPPPPPSSV 156
           P A     +              
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 29/82 (35%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P   + P  ++      +  P  +P    PA+  P   +  A + P      A+     +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 89  PPPSPPASSPPTISPPPPVSNP 110
            PP+  A++ P  +       P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 23/79 (29%), Positives = 33/79 (41%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           PS   S    +S+P   +P  +  PP +    S+P     A++P           P    
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 115 PPPPSSTPPPNSPPSPPSD 133
           P  PS TPP N+  +PPS 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 34/81 (41%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           S  +   A +PPP       P P P   +P   +PP  PP  PP    +S    +     
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 189 AVPPSNVPPPPTQTPPTPASP 209
           + PP  +P  PT +P   +SP
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 24/79 (30%), Positives = 32/79 (40%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
           S   T   PPP    P    P PP+ +P  T+PPP+PP   P  + +   +     +   
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 81  ASNPPTSSPPPSPPASSPP 99
              P    P PSP   S P
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           +S         PP     P PPA  PP       + PPT  PPP   P  +    + PA 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP---PTATQASSNAPAQ 569

Query: 97  SPPTISPPPPVSNPPTRSPPPPSST 121
            P   SPPPP+   PT SP   SS 
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 59/248 (23%), Positives = 87/248 (35%), Gaps = 6/248 (2%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +     +P  P ++   +     P S  PT +   + P    PTS +  A+   TS 
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSP 502

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
            P  + P  +SP     + +P   SP P V    T +  PP+ T    +  SP       
Sbjct: 503 TPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSP--QVTEE 560

Query: 138 SPPPSNPPSNLPPPPP---SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           SP  +     +   P    S+V   +    S P    P  PSSS       +    P   
Sbjct: 561 SPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLT 620

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSP-PPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
              P      T  +P  P  ++ S  SP P P T      PG    S      + T    
Sbjct: 621 SAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMP 680

Query: 254 PESSSSPS 261
             +++SPS
Sbjct: 681 NPNATSPS 688

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNP-PKSSPPPPPVSKPPTTSPPPSPPA 59
            +A +P    A +++ P   + P   + P P   P P  +PP P  + P   +P P P A
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           +     +  PA++P  ++ P  + P   +P  +P A + P      
Sbjct: 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 11/81 (13%), Positives = 26/81 (32%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
              ++P     +     S P + PA+  P + +P   +    + PP      ++      
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 95  ASSPPTISPPPPVSNPPTRSP 115
             +    + P   +     +P
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 55.8 bits (134), Expect = 4e-08
 Identities = 46/183 (25%), Positives = 62/183 (33%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           PP +  PP  +  PS P   P   + PP  SP  + P P    P+     S P+  P  +
Sbjct: 178 PPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRL 237

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
             P P   P T S   P    P +  P      P    P +     +    PSS  P   
Sbjct: 238 PSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPF 297

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
                     P P  + P  ++PP+  A+ P   P      P      I P P+   P  
Sbjct: 298 GLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQL 357

Query: 222 PPP 224
           P  
Sbjct: 358 PNQ 360

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 19/131 (14%)

Query: 372 QNLLGEGGFGSVYKGYL-PDG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 71

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHG----EGRPVLDWATR----------VKIAA 472
           +L+G C       L  +Y P+  L   L      E  P    A            +  AA
Sbjct: 72  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 131

Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 132 DVARGMDYLSQ 142

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 95  ASSPPTISPPPPVSNP-PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
           A+   T+  PP  S      S P         +  +P      N    S           
Sbjct: 450 ANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLISK- 508

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPT---QTPPTPAS 208
           S+    K S P      P  P +S   K +     A     S++  P +   ++P     
Sbjct: 509 STGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVP 568

Query: 209 PIAPRPSNSSPNSPPP-PSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSS 258
            +     +   ++     ST   +      +  +  +P   +  ++P  +S
Sbjct: 569 LVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 30/128 (23%), Positives = 36/128 (28%), Gaps = 5/128 (3%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPP-ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
               A            SP     PP AS  P       P A  PP  +P P    P   
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP- 128

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
               P+  P P  P   P  P     P     +  P P   + +P +      P     P
Sbjct: 129 -VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSA--PQPAQQAFQPAEPVAAPQPEPVAEP 185

Query: 174 PPSSSPPK 181
            P    PK
Sbjct: 186 APVMDKPK 193

Length = 333

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 14/146 (9%)

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
           P +   A +P     P+      P++    + +    P      P +++     P AP A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA---AAPAAAASA---PAAPPA 419

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP----PGIPVPSTENTP 245
             P      P    P  A   AP     +P  P   + + ++ P    P   V S    P
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 246 GNGTNPSSPESSSSPSNNGIGTAGTV 271
                 +   +  +P+  G     TV
Sbjct: 480 A----AAPAAARLTPTEEGDVWHATV 501

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             PS  P   +  SPP   S+P   S PP  S+    +PPP P S    + PP       
Sbjct: 186 DPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPP 245

Query: 62  PPTSSSPPASSP-PTSSPPPASNPPTSSPPPSP 93
           PP    PP S+  PT     A+  P        
Sbjct: 246 PPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.3 bits (134), Expect = 5e-08
 Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 6/137 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSS---PPPPPVSKPPTTSPPPSPP 58
           +A      A   +   PP         P        S               T    S P
Sbjct: 384 TAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

Query: 59  ASNP---PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           A+     P +S+    +    +P      P         A++P  +   P  +    +  
Sbjct: 444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503

Query: 116 PPPSSTPPPNSPPSPPS 132
                TP   +  +  +
Sbjct: 504 LEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 20/81 (24%), Positives = 30/81 (37%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
            ++S     P     +  PP P    P  +   P  TPPP  P +  +   A +  P++ 
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 145 PSNLPPPPPSSVEPPKRSPPS 165
               P P   +  P K S P 
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 32/122 (26%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           S    P  +  P    P+  P P  ++   P  S  S   Q P  P S++ P  +PP   
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPTVS 428

Query: 189 AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNG 248
             PP+ VP  P  T P        RP+        P S    S  P    P  E      
Sbjct: 429 VDPPAAVPVNPPSTAPQAV-----RPAQFKEEKKIPVSKVS-SLGPSTLRPIQEKAEQAT 482

Query: 249 TN 250
            N
Sbjct: 483 GN 484

Length = 614

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 149 PPPPPSSVEPPKRSP--PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           P P P+       SP  P+  P   P   +++      P      P  VPP P   P   
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 207 ASPIAPR------PSNSSPNSPPPPSTK 228
               AP+      P +  P   PP   K
Sbjct: 424 TPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.3 bits (134), Expect = 6e-08
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
            P    +    ++      S P       +P A  P   ++   ++PP  +   A     
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA--AAA 94

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           +   P   A++    +        P R   
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 20/85 (23%), Positives = 31/85 (36%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           S+  + S     P     +   P  + P       A  P    PPP+   +S    +  P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSP 130
             S+PP   P  P+ +P  +S P  
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
                       PV   P  +P P  +     SP     +  P+     + PA  PPT S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
             P ++ P     P S  P +  P          +S    +  P T  P
Sbjct: 429 VDPPAAVPV---NPPSTAPQAVRPAQFKEEKKIPVSKVSSLG-PSTLRP 473

Length = 614

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 375 LGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG-------EGRPV-----LDWATRVKIAAGA 474
            G C   D  +++++Y+ +  L  +   HG       +G+P      L  +  + IA+  
Sbjct: 73  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 132

Query: 475 ARGLAYL 481
           A G+ YL
Sbjct: 133 ASGMVYL 139

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VA+K LK G    E  F  E +I+ ++ H  LV L   C  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPE-AFLQEAQIMKKLRHDKLVQLYAVCSE 72

Query: 435 DDRRLLIYDYVPNNTLYFHLH-GEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++   ++ +Y+   +L   L  GEG+  L     V +AA  A G+AYL  
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKSGEGKK-LRLPQLVDMAAQIAEGMAYLES 121

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.9 bits (133), Expect = 8e-08
 Identities = 13/82 (15%), Positives = 26/82 (31%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +  PT +     +     +  P   +       PP+  A   P   +  A++    +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 78  PPPASNPPTSSPPPSPPASSPP 99
            PPA+    +    +      P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 26/77 (33%), Positives = 35/77 (45%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
            + S    +  PP  SPP P   PP   P  + PP   PPPPP++ +    +P  +P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 171 PPPPPSSSPPKNSPPAP 187
            PPPP    P  SP   
Sbjct: 575 SPPPPIPEEPTPSPTKD 591

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           S  ASN   +  PP  SPP    PPA  PP   P  + P  +PP   P    ++    + 
Sbjct: 514 SGSASNTAKTPPPPQKSPP----PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPP 140
            P  S+PPP  P  P   P  +S P
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 21/81 (25%), Positives = 32/81 (39%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
           + S+   +  P         P  + P P P A++PP   PPPP +     S  P      
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 124 PNSPPSPPSDPPANSPPPSNP 144
            + PP  P +P  +    S+P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
              GP          P + P   +      +P +SS    P +    T P  +PP  +  
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD 430

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
             ++ P    P S+ P A  P         P S   ++ P 
Sbjct: 431 PPAAVPV--NPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPS 469

Length = 614

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.7 bits (131), Expect = 9e-08
 Identities = 66/250 (26%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
              PP +  PP  +  P    P  S+   PP   P    P P P   +P +  S P+  P
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 74  PTSSPPP-------ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP---PPPSSTPP 123
                P        AS      P PS          P PP+ +   + P     PSS PP
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPP 294

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLP---------------PPPPSSVEPPKRSPPSVPP 168
                +    PP   P  + P S+ P               P PP+   P  + PP+ P 
Sbjct: 295 QPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPI 354

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
              P      PP    P+P    PSN+PPPP   P +      P  ++  P    P S  
Sbjct: 355 PQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQP 414

Query: 229 RLSPPPGIPV 238
             S P   PV
Sbjct: 415 LQSVPAQPPV 424

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.7 bits (131), Expect = 9e-08
 Identities = 73/285 (25%), Positives = 95/285 (33%), Gaps = 10/285 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           SAPS  P    S  PP         SP PP  +             P   +    P    
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQ 287

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P+S+ P       S  PP   P  + P    P S        PP   P   +P  P   
Sbjct: 288 HPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIK 347

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPP-----PPPSSVEPPKRSPPSVPPQNPPPP-- 174
           PPP +P     +     PP    PS  P      PPP +++P    P   PP   PPP  
Sbjct: 348 PPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQ 407

Query: 175 --PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
             P S P ++ P  P  +  S   PP   T P       P P +     P          
Sbjct: 408 LMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGP-PQSPFAQHPFTSGGLPAIG 466

Query: 233 PPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAV 277
           PP     ST   P   ++ S P  S+ PS+ G    G  +  + +
Sbjct: 467 PPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQI 511

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLV 429
           N +G G FG VY    L  G  +A+K+++I     +  +E   E++++  + H +LV   
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G  +  ++  +  +Y    TL   L   GR +LD             GLAYLH 
Sbjct: 66  GVEVHREKVYIFMEYCSGGTLEELLEH-GR-ILDEHVIRVYTLQLLEGLAYLHS 117

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 42/186 (22%), Positives = 63/186 (33%), Gaps = 5/186 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +           SS P P S+  +     P  +P      P P S   ++S   S  +S+
Sbjct: 267 TRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSS 326

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             TSSS  +S     SP P+     S   PSP    PP     P     P+R+P  P+++
Sbjct: 327 SSTSSSSESSRGAAVSPGPSP----SRS-PSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
               +     +     +             P  S      +  +   + P   PS  P  
Sbjct: 382 AGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWP 441

Query: 182 NSPPAP 187
            SPP P
Sbjct: 442 GSPPPP 447

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           S+  T+  PP        P P+PP   P   +PPP    PP       +S+  P   P+ 
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPP--TATQASSNAPAQIPAD 573

Query: 131 PSDPPANSPPPSNPPSNLPPP 151
            S PP     P+  P+    P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 26/81 (32%), Positives = 31/81 (38%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S+S       PP  SPPPP   PP   P        P   PP +  AS+   +  P  SS
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 73  PPTSSPPPASNPPTSSPPPSP 93
           PP   P   +  PT    P  
Sbjct: 576 PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.3 bits (130), Expect = 1e-07
 Identities = 63/238 (26%), Positives = 79/238 (33%), Gaps = 7/238 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPP----VSKPPTTSPPPSP 57
            A S  PP    S   P    PP+ S   P   P +   PP P    +  PPTT  P  P
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358

Query: 58  PASN---PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
             S+   P      P    P++ PPP +  P SS P   P S+ P      P S P    
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           P  P       S P   S  P +      P S     P +S   P   PP   P + P  
Sbjct: 419 PAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAA 478

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
           P  +   + PP            P    PP          +    + PPPP +    P
Sbjct: 479 PPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 372 QNLLGEGGFGSV--YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRH 424
             +LGEG FG V  Y  Y P     G  VA+K LK   GQ     +K E+ I+  ++H +
Sbjct: 9   IRVLGEGHFGKVSLYC-YDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN 67

Query: 425 LVSLVGYCIS--DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +V   G C         LI +YVP  +L  +L    +  L+ A  +  A     G+AYLH
Sbjct: 68  IVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL---PKHKLNLAQLLLFAQQICEGMAYLH 124

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 33/218 (15%), Positives = 45/218 (20%), Gaps = 7/218 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           S GP A    +  P   +              K      P  +P    P        PP 
Sbjct: 85  SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144

Query: 65  SSSPPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
                        P                    PP   PP     PP       ++   
Sbjct: 145 EK-EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203

Query: 124 PNSPPSPPSDPP-----ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
               P  P          +        ++      S          S   + P P PS +
Sbjct: 204 VKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMA 263

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
            P+    +            P    P  A P  PR   
Sbjct: 264 SPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKR 301

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---GEREFKA---EVEIISRIHHRHLV 426
            +LG+G +G+VY G    G+ +A+KQ+++        E+E++    EV+++  + H ++V
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEG---RPVLDWATRVKIAAGAARGLAYLHE 483
             +G C+ D+   +  ++VP  ++   L+  G    PV    T+  +      G+AYLH 
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQIL-----DGVAYLHN 120

Query: 484 DC 485
           +C
Sbjct: 121 NC 122

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPS-NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
            PP  + P+    PPA +P   + P+     P P  VE  KR       +      +++P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLT---AQREQLVARAAAP 108

Query: 180 PKNSPPAPIAVP-PSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
                 AP A    +       +     A+   PR    +  +       R+
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160

Length = 484

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 43/257 (16%), Positives = 61/257 (23%), Gaps = 30/257 (11%)

Query: 4   PSPGPPAANSSSPPPPVSNPPT---ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           P PGP        P P   P       P    + P +    P      P    P   P  
Sbjct: 362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P             +   P +     +       +   T         P   +   P  
Sbjct: 422 APAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQP---AAQEPLY 478

Query: 121 TPPPNSPPSPPSDPP--ANSPPPSNPP------------------SNLPPPPPSSVEPPK 160
             P      P  +P        P+ PP                  +    P P  V+ P+
Sbjct: 479 QQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPE 538

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP----ASPIAPRPSN 216
               S+   +    P         P    V  + +      T   P    A+   PRP  
Sbjct: 539 PIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQV 598

Query: 217 SSPNSPPPPSTKRLSPP 233
                P  P  KR+  P
Sbjct: 599 KEGIGPQLPRPKRIRVP 615

Length = 1355

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 4/178 (2%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P      +          P++ P P+  +S+P   S  P+ S P S P P+S   +SS
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSS 317

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              S  +SS  T S             P PS +P   SP  PP  P   S P   P  + 
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSP---SPSRPP-PPADPSSPRKRPRPSR 373

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
            P  P++         +            +  +     P   P              P
Sbjct: 374 APSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431

Length = 1352

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
            P   + P  ++   +  AS+P         + P    P   +   PP    +  +    
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 137 NSPPPSNPPSNLPPPPPSSVEP 158
            +PP +        P  ++VE 
Sbjct: 97  AAPPAAAAA---AAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 29/82 (35%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P  +  P ++     +  S P+  PA   P +  P+      P++   P  +  +     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 171 PPPPPSSSPPKNSPPAPIAVPP 192
            PP  +++    +      V P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 29/80 (36%)

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA 207
           LP    S +          P  NP PPP+   P        A  PS  P   +   P PA
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 208 SPIAPRPSNSSPNSPPPPST 227
            P  P P+  +  +  PPS 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S+   A  PP     P PPA +PP   P      P    PPP ++    N+P   P+D  
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 136 ANSPPPSNPPSNLPPPPPSSVEP 158
              PPP        P   SS E 
Sbjct: 576 --PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
           + S    +  P       PP +  P +  P   + PPT  PPPP++T    S  +P   P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA--SSNAPAQIP 571

Query: 135 PANSPPPSNPPSNLPPPPPSS 155
             +SPPP  P    P P   S
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 26/81 (32%), Positives = 34/81 (41%)

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
            + S     PP     PPP +  PP   P +  P   PPPP  +  + S  AP  +P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 195 VPPPPTQTPPTPASPIAPRPS 215
            PPPP    PTP+      P 
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 51/215 (23%), Positives = 73/215 (33%), Gaps = 6/215 (2%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P   P +  P   P +    +S P       P    S     P T S  P ++ P   
Sbjct: 565 PAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQW 624

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSP--PPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           P P  P    P    P   +     +P  PP     P     +     P    P      
Sbjct: 625 PMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTM 684

Query: 147 NLPPPPPSSVEPPKRSP-PSVPPQNPP---PPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                 P +++PP R+P P  PP  PP     P+++  +  PPA            P + 
Sbjct: 685 LPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRA 744

Query: 203 PPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
            P  A+P   RP  ++P    PP+    +P P  P
Sbjct: 745 RPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPP 779

Length = 991

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 8/129 (6%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP--PVSNPPTRSPPPPSSTPP 123
               A +          +P     PP   A     +  PP   V       P  P+  P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                 P  + P         P   P P P    P   +  +  P  P   P   P   +
Sbjct: 130 QQPAYQPQPEQP---LQQPVSPQVAPAPQPVHSAPQP-AQQAFQPAEPVAAPQPEPV--A 183

Query: 184 PPAPIAVPP 192
            PAP+   P
Sbjct: 184 EPAPVMDKP 192

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 13/96 (13%), Positives = 22/96 (22%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
           PP   +      PP + PA+    ++     +P                     A + P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
              P   +                 + P P     A
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADA 148

Length = 484

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 18/169 (10%)

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP---PSPPASSPPTISP 103
           K      P +PP+  PP S S PASSP  S    + +           S P ++  + S 
Sbjct: 638 KSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSA 697

Query: 104 P--PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           P  PPV +P  R  PP    P   S    P++    +   S   ++       +VE    
Sbjct: 698 PAPPPVPDPYDR--PPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQ--AVEQQAT 753

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
             P V  +   P  +++  + S           V           +  I
Sbjct: 754 HQPQVQAEAQSPASTTALTQTSSE---------VQDTELNLVLLSSGSI 793

Length = 944

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 18/121 (14%)

Query: 374 LLGEGGFGSVYKG-YLPDGREV----AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           +LG G FG+VYKG ++P+G  V    AIK L +  G +   EF  E  I++ + H HLV 
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTL--YFHLHGE---GRPVLDWATRVKIAAGAARGLAYLH 482
           L+G C+S   + L+   +P+  L  Y H H +    + +L+W  ++      A+G+ YL 
Sbjct: 74  LLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQI------AKGMMYLE 126

Query: 483 E 483
           E
Sbjct: 127 E 127

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE-----REFKAEVEIISRIHHRHLVS 427
           LLG+G FG VY  Y  D GRE+A+KQ+       E        + E++++  + H  +V 
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68

Query: 428 LVGYCISDDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             G C+ DD  L I+ +Y+P  ++   L   G  + +  TR K       G+ YLH
Sbjct: 69  YYG-CLRDDETLSIFMEYMPGGSVKDQLKAYG-ALTETVTR-KYTRQILEGVEYLH 121

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 103  PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK-- 160
            P  PV   P  +  P ++   P+     P DP A   P    P+ LP  P      P+  
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534

Query: 161  ---RSPPSVPPQNPPPPPSSSPPKNSPPAP-IAVPPSNVPPPPTQ-----------TPPT 205
               R    +   +   PP   PP   P AP  +VPP    P P++            PP 
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQ 2594

Query: 206  PASPIAPR-----PSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
             A P AP      P   +P SP PP T    PPP  P P+      +      P
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 9/139 (6%)

Query: 2   SAPSPGP-PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            AP+  P  AA  ++  P        +   P    P ++P P     PP    PP   + 
Sbjct: 452 PAPAAAPAAAARPAAAGPR--PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P    + PA     S P PA+  P          +  P  +P P  +        P   
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADP---DDAFETLAPAPAAAPAPRAAAATEPVVAP--- 563

Query: 121 TPPPNSPPSPPSDPPANSP 139
            PP  S    P     + P
Sbjct: 564 RPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNP--PKSSPPPPPVSKPPTTSPPPSPPA 59
           ++ SP  P ++S   P   S P   S P   S P  P S     P   P + + P  PP 
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
              P    P    PP S+  P   PP++S  P+P       
Sbjct: 240 PAAP-PPPPVQQVPPLSTAKPT--PPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 16/82 (19%), Positives = 28/82 (34%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P   + P+  +   A +            P   +  PP  + P+ PP+      +++ P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 182 NSPPAPIAVPPSNVPPPPTQTP 203
             P A  A  P+        TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 153 PSSVEPPKR------SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           P+SV+P  R       P S          +++       AP A  P+  P P       P
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPA-APAPAPPAAAAP 80

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTP 245
           A+P  P  + ++  +P  P     +  P       E TP
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 13/80 (16%), Positives = 25/80 (31%)

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
            P S  +   A +   +   +    P   +   P  +PP+      PP P+++    + P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 186 APIAVPPSNVPPPPTQTPPT 205
           A      +   P        
Sbjct: 97  AAPPAAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 20/78 (25%), Positives = 29/78 (37%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           S   S  A+    ++  PA +P     P   + P +    + P+  P   SPP PV   P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 112 TRSPPPPSSTPPPNSPPS 129
           T   P P +      P  
Sbjct: 422 TEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
            S   +     S+P    PA +P     P   S P T      + +PPP     P   P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKT-KQAATTPSPPPAKASPPIPVPA 419

Query: 136 ANSPPPSNPPSNLPPPPPSS 155
             + P   PP+N    PPS 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 31/126 (24%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
                P +     +  PSP     P  +S      P   PP A  PP  +P P+ PA  P
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASA-QPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPN--SPPSPPSDPPANSPPPSNPPSNLPPPPPS-S 155
                  P    P + P  P   P P        P+        P   P   P   P+  
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPV 188

Query: 156 VEPPKR 161
           ++ PKR
Sbjct: 189 MDKPKR 194

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 16/108 (14%), Positives = 35/108 (32%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           +PPA+  P ++ PP ++ P +   PA+     +P     A                  +P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
              +   P     +  +         + P   +P    ++V    ++ 
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VAIK ++  G   E +F  E +++ ++ H +LV L G C  
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-EGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK 70

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                ++ +Y+ N  L  +L  E +  L     + + +     + YL  + 
Sbjct: 71  QRPIFIVTEYMANGCLLNYLR-ERKGKLGTEWLLDMCSDVCEAMEYLESNG 120

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYC 432
           LLG+G FG V+KG L D   VA+K  K    Q  + +F +E  I+ +  H ++V L+G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
                  ++ + VP       L  + +  L     VK A  AA G+AYL
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYL 109

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 32/148 (21%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 12  NSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPAS 71
            S   PPPV+  P    P P   P ++    P   +    +P  SP A+ P T + P   
Sbjct: 51  PSPQAPPPVAQLPQ---PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
           + PT    P    P   P          T +P     + P +              P+  
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMV-------TQNPANSPLDQPAQQRALQQLQQRYG-APASG 159

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPP 159
             P        N  S L   P     P 
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 30/158 (18%), Positives = 41/158 (25%), Gaps = 9/158 (5%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS 82
           P   SP  P        P P P       + P      +   + SP A+ P T + P   
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 83  NPPTSSPPPSP--PASSPP--TISPPPPVSNPPTRSPPPPSSTPP---PNSPPSPPSDPP 135
             PT    P    P   P   T +P     + P +             P S   P     
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQS 167

Query: 136 ANSPPPSNPPS--NLPPPPPSSVEPPKRSPPSVPPQNP 171
           A     S      N   PP  +         ++     
Sbjct: 168 AQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLRE 205

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 47/209 (22%), Positives = 59/209 (28%), Gaps = 8/209 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS-NPPTS 87
           P           P P     P+  P  S     P     P     P     P S   PT 
Sbjct: 549 PGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTR 608

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPP---PSSTPPPNSPPSPPSDPPANSPPPSNP 144
              P  P       SP  P S    + PPP   PSS   P  P    S  P  SP P   
Sbjct: 609 PKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFD 668

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P          ++   +S  +           S   +  P  P     +  P PP   P 
Sbjct: 669 PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL-PR 727

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
               P  P      P++  P   +  +PP
Sbjct: 728 DEEFPFEPI---GDPDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
            P +++ P +  A++    S P     P  ++P  P+  PP  + P+ P  P A +   +
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAA--PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVP 167
            P +       ++           P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
           +     + PPP   P PP+  P    P +  P   PPPPP    P      S  P   P 
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP----PTATQASSNAPAQIPA 572

Query: 174 PPSSSPPKNSPPAPIAVPPSN 194
             S  PP    P P     S+
Sbjct: 573 DSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 26/82 (31%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
            ++S+   + PP    PP   P    P P+  A  P    PPP  +   + +P    +  
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 123 PPNSPPSPPSDPPANSPPPSNP 144
            P  P      P          
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           P+A  S      +     +P P  S PP    P  P +K   T+P P P  ++PP     
Sbjct: 361 PSAFISEIANASAPANP-TPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 69  PASSPPTSSPPPASNPPTSS 88
             + P  + P  A+N P S 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 27/82 (32%), Positives = 39/82 (47%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
           G  +  + +PPPP  +PP  +P PP+  P  ++PPP P   PPT +   S   +  P  S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 67  SPPASSPPTSSPPPASNPPTSS 88
           SPP   P   +P P  +     
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
                    I P    + P  ++ P P  +   + SP     +S     S+P +++ P  
Sbjct: 370 SGGRGPKQHIKPV--FTQP--AAAPQPSAAAAASPSPSQ---SSAAAQPSAPQSATQPAG 422

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           +PP  S  P ++ P +PP+++P  + P             P S   
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQ----FKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 38/174 (21%), Positives = 53/174 (30%), Gaps = 8/174 (4%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP--PPSPPASSP-PTISPPPPVSNP 110
           P  P    PP +S     + PT +  P   P T  P   P+P         + P    N 
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P + P  P       +   P   P     P    P+  P   P+  +P   +      Q 
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQP--YYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453

Query: 171 PP-PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
               P S+   + +   P A  P    P P      P     P    + P  PP
Sbjct: 454 STFAPQSTYQTEQTYQQPAAQEPLYQQPQP--VEQQPVVEPEPVVEETKPARPP 505

Length = 1355

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 45/242 (18%), Positives = 73/242 (30%), Gaps = 21/242 (8%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP----ASNPPTS 65
           +   SS   P S+P +     P  + P S+     V  P + S           +  PT 
Sbjct: 388 SNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTL 447

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTIS---PPPPVSNPPTRSPPPPSSTP 122
           +S P   P   S         +SP  S     PP          + N P  +    + + 
Sbjct: 448 ASIPDEKPSNISVF---EDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSS 504

Query: 123 -PPNSPPSPP-SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
            PP SP     + P  + P       +L     S         P++  +      S +  
Sbjct: 505 IPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRS 564

Query: 181 KNSPPAP----IAVPPSNVPPPPTQTPPTPASPIA---PRPSNSSPNSPPPPSTKR--LS 231
            +           + P+ +P  P +   T +S  +   P P+         P      L 
Sbjct: 565 VSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPRFDHENLL 624

Query: 232 PP 233
           PP
Sbjct: 625 PP 626

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++ ++ H  LV L G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK 70

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
                ++ +Y+ N  L  +L  E       +  +++      G+AYL
Sbjct: 71  QRPIYIVTEYMSNGCLLNYLR-EHGKRFQPSQLLEMCKDVCEGMAYL 116

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 24/77 (31%), Positives = 30/77 (38%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           SN  K+ PPP     PP  +PP   P +  P  + PP     T +   A     +   P 
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 93  PPASSPPTISPPPPVSN 109
           PP    PT SP    S 
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P  +  P ++ PPP + P+  S P A +  P+           +  E       +     
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 171 PPPPPSSS-------PPKNSPPAPIAVPPSNVPPPPTQTP 203
              P + +         +    A  A P   VP       
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 29/164 (17%), Positives = 38/164 (23%), Gaps = 22/164 (13%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP----TSSPPPASNPPTSSPPPSPPAS 96
           P P    P    P P P         + PA         +  P A+ P T + P  P   
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPA-- 108

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP--SDPPANSPPPSNPPSNLPPPPPS 154
             PTI   P    P     P   +  P NSP   P               P++       
Sbjct: 109 -GPTIQTEPGQLYPVQV--PVMVTQNPANSPLDQPAQQRALQQLQQRYGAPAS------- 158

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
                +        Q          P    P        +    
Sbjct: 159 ----GQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESE 198

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
             + P A+    +   PA+ PP ++PP  P A + P  + P P    P  +  PP+ +  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAP-APPAAAAPPARSAD 439

Query: 124 PNSPPSPPS 132
           P +  S   
Sbjct: 440 PAAAASAGD 448

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 16/77 (20%), Positives = 22/77 (28%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
              S      +    T  P   P   P   S+P      T+  PP +      P P+ P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 96  SSPPTISPPPPVSNPPT 112
              PT       + P  
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 66  SSPPASSPPTSSPPPASNPP-TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
            S   S    +S P    P    SPPP+P   S P         +PP     PP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 125 NSPPSP-PSDPPANSPPPSNPP-------SNLPPP 151
            + PSP P    AN+PP  N         + L  P
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQILAKLELP 455

Length = 620

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGE---REFKAEVEIISRIHHRHLVS 427
           LLG G FGSVY+G  L DG   A+K++ +   G  G+   ++ + E+ ++S++ H ++V 
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGR---PVLDWATRVKIAAGAARGLAYLH 482
            +G    +D   +  + VP  +L   L   G    PV+   TR  +      GL YLH
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILL-----GLEYLH 119

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 43/265 (16%), Positives = 67/265 (25%), Gaps = 28/265 (10%)

Query: 8   PPAANSSSPPPPVSNPPTI----SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
              A      P    P  +      P   ++   +S       K P      S P     
Sbjct: 10  TKTAVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAP---RQ 66

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
             ++PP +  PT++ P +S  PT     + P     T +P          SP     T  
Sbjct: 67  IQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPES--------SPSARRLTRS 118

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                    D         +    L     +     +R P S         P+++    +
Sbjct: 119 EGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAA 178

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
                      +           AS    R S S  N P  P     +P   +   S   
Sbjct: 179 L-----FKDDEIRQEVDAARSDQASQ--SRLSRSRGNPPAIP--PDAAPRQPMLTRSAGG 229

Query: 244 TP----GNGTNPSSPESSSSPSNNG 264
                  N      P+S  +    G
Sbjct: 230 RFEGEDENLERNLQPQSPITLDKKG 254

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSN--PPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           P   ++++ P     P       P ++  P  ++ P P V         PS    +   +
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
            +P A + P  + P     PT     S PA+ P
Sbjct: 223 PAPAAPATPDGAAP----LPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 7e-07
 Identities = 15/75 (20%), Positives = 27/75 (36%)

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP 192
            P + + P +   +        +  P  ++P +  P  P     ++PPK +  A  A  P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 193 SNVPPPPTQTPPTPA 207
           +  P       P  A
Sbjct: 97  AAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
             +      A  + +P P  S PP    P        ++ P PP +K     P P+ P  
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 61  NPPTSSSPPASSPPTS 76
             PT  +  A++PP+ 
Sbjct: 424 PSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 375 LGEGGFGSVYKGYLPD-GREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+GGFG V    +   G+  A K+L   ++   +GE+    E +I+ ++  R +VSL  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
              + D   L+   +    L +H++  G P    A  +  AA    GL +LH+
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ 113

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 375 LGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K              VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 68  LYGACSQDGPLLLIVEYAKYGSL 90

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 34/130 (26%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 149 PPPPPSSVEPPKR--------------SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P P P   E  +                       +P  PPSSSP   S P+P   P S 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
                   P +  S   P    S  N  PPP      PPP   VP           P+ P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK-----PTPP 262

Query: 255 ESSSSPSNNG 264
            +S++P+  G
Sbjct: 263 SASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 21/79 (26%), Positives = 31/79 (39%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           SA +           PPP +  P +  P   + PP   PPPP  ++  + +P   P  S+
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 62  PPTSSSPPASSPPTSSPPP 80
           PP       +  PT    P
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
             S P     +  P ++  PA+   T+     +    ++P P+            P  +N
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQAN 216

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
             T + P P++   P+     P+D    S P ++P
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 27/136 (19%)

Query: 375 LGEGGFGSVY------------KGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+            K +  +        VA+K L+       R +F  EV+I
Sbjct: 13  LGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLH-------GEGRPVLDWATR 467
           +SR+   ++  L+G C  D    +I +Y+ N  L  +   H             L ++T 
Sbjct: 73  LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTL 132

Query: 468 VKIAAGAARGLAYLHE 483
           + +A   A G+ YL  
Sbjct: 133 LYMATQIASGMRYLES 148

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 51.6 bits (123), Expect = 9e-07
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 28/139 (20%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPS-PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           SN   S+P     S P   + P S  P +NPP S++P  S+PP S+PP ++ P +++   
Sbjct: 410 SNAGYSNPG---NSNPGYNNAPNSNTPYNNPPNSNTP-YSNPPNSNPPYSNLPYSNT--- 462

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
                         P SN P  + PP S+    ++  +      AN P  + P +N P  
Sbjct: 463 --------------PYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAA 508

Query: 152 PP------SSVEPPKRSPP 164
                   +SV  P  S P
Sbjct: 509 NNFHGAAGNSVGNPFASRP 527

Length = 1560

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 27/85 (31%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
           + S   S  A  PP     P    PT   P  +       PP PP ++    S  P    
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDP 134
             +  PPP    P P+       + 
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           PS   S     S P           P P+ +PPP             +  PS PP+   P
Sbjct: 361 PSAFISEIANASAPAN-------PTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP 413

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
           P P   EP +  P   PP N    P S 
Sbjct: 414 PIPVPAEPTE--PSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 23/80 (28%), Positives = 31/80 (38%)

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            S++    +PP P   PP  +P P  P      PPP+   PP  +  +        P  S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 178 SPPKNSPPAPIAVPPSNVPP 197
           SPP   P  P   P  +  P
Sbjct: 575 SPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 61/274 (22%), Positives = 99/274 (36%), Gaps = 12/274 (4%)

Query: 4   PSPGPPAANSSSPPPPVSNPPT-ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           P+ G P   +SS  P  ++P +  +   P +  P  +   P  + P T     +P A++P
Sbjct: 469 PTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSP 528

Query: 63  P---TSSSPPASSPPTS--SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
                  +  A+SPPT   S P A++P  +   P    ++P   S P  +++  T     
Sbjct: 529 TPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHG 588

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
             S+P    P  P S         ++    L    P+  E      PSVP        S 
Sbjct: 589 TGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSP 648

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
            P   +         S+    P +   T   P      N +  SP  PS ++ + P    
Sbjct: 649 GPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMP------NPNATSPSAPSGQKTAVPTVTS 702

Query: 238 VPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTV 271
                N+    T+ S+  +S+SP  N      T 
Sbjct: 703 TGGKANSTTKETSGSTLMASTSPHTNEGAFRTTP 736

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           + P A++P  + PPPA+ P   S P +P A   P +                 ++ P   
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
              +P +     +         L     ++  P   +  +
Sbjct: 112 EAQAPAAPAERAAAEN--AARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           PP +  P  + PPP + P   S P  P     P          A      +   A + P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
           +  P A     ++   +   +     +P P V      +    
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 375 LGEGGFGSVY----KGYLP---------DGRE--VAIKQLKIGGGQGER-EFKAEVEIIS 418
           LGEG FG V+    +G            DG+   VA+K L+    +  R +F  E++I+S
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS 72

Query: 419 RIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL----------HGEGRPVLDWATRV 468
           R+ + +++ L+G C+SDD   +I +Y+ N  L   L          H    P +  A  +
Sbjct: 73  RLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLL 132

Query: 469 KIAAGAARGLAYL 481
            +A   A G+ YL
Sbjct: 133 YMAVQIASGMKYL 145

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
              +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G 
Sbjct: 11  LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 67

Query: 432 CISDDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            + +   L I  +Y+   +L  +L   GR VL     +K +      + YL
Sbjct: 68  IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 118

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 49/286 (17%), Positives = 78/286 (27%), Gaps = 23/286 (8%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPP---PPVSKPPTTSPPPSPPASN 61
           + G  A    +P   V++  +I+            P P       K   +  PPS    +
Sbjct: 418 NSGILAWGLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVS 477

Query: 62  PPTSSSPPASSPPTSSPPPASNPP-----------TSSPPPSPPASSPPTISPPPPVSNP 110
            P S    A  P  ++ P +S              TSS   S  +             +P
Sbjct: 478 APASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSP 537

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P +SPP    T       + PS   +  P PS                            
Sbjct: 538 PPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKF--VIGTDPFAFANTVRLTDNMRGG 595

Query: 171 PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP---PPPST 227
                S  P  ++   P+  P S++  P T    TP+S +     N+  +S    P    
Sbjct: 596 NGVGSSVKPKGSASSKPLTGPGSDL-KPATLNGKTPSSSLVGAARNAGASSKVKIPSGLG 654

Query: 228 KRLSPPPG---IPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGT 270
              SP             +        + P    +      G   +
Sbjct: 655 GFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTES 700

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA----EVEIISRIHHRHLVSLV 429
           LGEG +G VYK      G  VA+K++++     E    +    E+ ++  + H ++V L+
Sbjct: 7   LGEGTYGVVYKARDKKTGEIVALKKIRL--DNEEEGIPSTALREISLLKELKHPNIVKLL 64

Query: 430 GYCISDDRRLLIYDYVPNN 448
               ++ +  L+++Y   +
Sbjct: 65  DVIHTERKLYLVFEYCDMD 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 45/212 (21%), Positives = 66/212 (31%), Gaps = 19/212 (8%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           +PP      +   P +    + PPP P A++P   + PP        +  P +   PP+ 
Sbjct: 256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDP 315

Query: 127 PPSPPSDPPANSP----------PPSNPPSNLPPPPPSSVEPPKRSPPSV--------PP 168
           PP  P+                 P   P  + P   P    P    P S+         P
Sbjct: 316 PPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHP 375

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
           +    P            P A  P           P PAS   P P+    ++PPPP+T 
Sbjct: 376 KRASLPTRKRRSARHAATPFARGPGG-DDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
             S  PG               P++  +   P
Sbjct: 435 LPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISP----PPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
           +        A +++P P  +  P  +P     PP       +   P        S  P+P
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
             +  P  ++ PA +PP +  P A+    ++P     A    T+
Sbjct: 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           P A  P P  PP +  P   +       +  + P     PPP +S P+ +P  P+    S
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
            +     Q      +  A +        P   S  R        + S    P       +
Sbjct: 421 QLLAARQQLQRAQGATKAKKSE------PAAASRARPVNSALERLASVRPAPSALEKAPA 474

Query: 254 PE 255
            +
Sbjct: 475 KK 476

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 6/111 (5%)

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT-PASPIA 211
           P++  P     P VPPQ+  P  S+        A        VPPPP   P   PA P+ 
Sbjct: 361 PAAPLPE----PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416

Query: 212 PRPSNSSPNSPPPPSTKRLSPPPGI-PVPSTENTPGNGTNPSSPESSSSPS 261
              S            +  +      P  ++   P N           +PS
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPS 467

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
              +  P  +   +   ++ P   P++  P   +P       P  PP  +    +  AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 189 AVPPSNVPPPPTQTPPTPAS 208
           A P +     P         
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
           PS      AN+  P+NP     P PP +   P     +   +     PS  P K SPP P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP----SAPKTKQAATTPSPPPAKASPPIP 416

Query: 188 IAVPPSNVPPPPTQTPPTPASP 209
           +   P+   P P          
Sbjct: 417 VPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
                  ++ P +  P P  S PP    P +P      T+ SPP +      P PA    
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 86  TSSPPPSPPASSPPT 100
            S  PP+  A++PP+
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPASNPPTS 65
           PP    +   P  +    I   P  +      P    P   +PP  +P P  P + PP  
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR--SPPPPSSTPP 123
           +  PA++    + PPA+ P  + PP + P  + P  + P     P        PP++ P 
Sbjct: 714 AQRPAAAT-GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP--PPSSVEPPKRSPP 164
             +P  PP  PPA    P   P+  PPP   P+S++   R+ P
Sbjct: 773 APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815

Length = 991

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 15/103 (14%), Positives = 33/103 (32%)

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP +++P A+ PP ++ P A + P +      P                  R+  P +  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
               + P+  +     +   +   +  P P   +      +  
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P S    +  P  P + PP  +PP  P A   P +++ PA +P    PP A+ PP  S
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARP-AAARPAPAPA---PPAAAAPPARS 437

Query: 89  PPPSPPASSPPT 100
             P+  AS+   
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 15/97 (15%), Positives = 25/97 (25%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
           +       P   S     +  P+P A    T ++    +  T+  P       +   PS 
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
                     P   + P   +P P            P
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 25/208 (12%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P SN  + +    S+   S+   ++   +++   +P  S+P   + P   SN P  + PP
Sbjct: 383 PHSNA-SYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAP--NSNTPY-NNPP 438

Query: 118 PSSTP---PPNSPPSPPSDPPANSPPPSNPP-SNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
            S+TP   PPNS P P S+ P ++ P SN P SN   PP S+ +       +   +    
Sbjct: 439 NSNTPYSNPPNSNP-PYSNLPYSNTPYSNAPLSN--APPSSAKDHHSAYHAAYQHRAANQ 495

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
           P ++ P  N P A                  +  +P A RP  S+P      +T   + P
Sbjct: 496 PAANLPTANQPAA---------NNFHGAAGNSVGNPFASRPFGSAPYGGNAATT---ADP 543

Query: 234 PGIPVPSTENTPGNGTNPSSPESSSSPS 261
            GI     E+ P  GTN    E S   S
Sbjct: 544 NGI--AKREDHPEGGTNRQKYEQSDEES 569

Length = 1560

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 31  PVSNPPKSSPP--PPPVSKPPTTSPPPS-PPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
             SNP  S+P     P S  P  +PP S  P SNPP S+ P ++ P +++P   SN P S
Sbjct: 413 GYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTP--YSNAPLS 470

Query: 88  SPPPSPPASSPPTISPP-------PPVSNPPTRSPPP--PSSTPPPNSPPSPPSDPPANS 138
           + PPS                    P +N PT + P          NS  +P +  P  S
Sbjct: 471 NAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGS 530

Query: 139 PPPSNPPSNLPPP 151
            P     +    P
Sbjct: 531 APYGGNAATTADP 543

Length = 1560

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           ++ PP         +  P  +    T       P S  PT    P+SSP + S P     
Sbjct: 147 SLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206

Query: 85  PT--SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
           P+        PP  S  T S    +S+    S     +T  P S  S  S P + S 
Sbjct: 207 PSNLQVTTDVPPPYSNGT-SRSSTMSSSANLSIISSLAT--PRSGESFRSTPTSGSS 260

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 375 LGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY+G             VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVLDWATRVKI---AAGAARGLA 479
           L+G   +    L++ + +    L  +L       E  P L   T  K    AA  A G+A
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133

Query: 480 YLHE 483
           YL  
Sbjct: 134 YLAA 137

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 63/255 (24%), Positives = 84/255 (32%), Gaps = 38/255 (14%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS-----------------SPPPPPVS 46
           P     AA+   P P     P    PP    PP+                   PP  P+ 
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIP 388

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP--- 103
            PP++SP     +S    + + PA      SP  ASN P   P       + P +SP   
Sbjct: 389 TPPSSSP----ASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRP-LSPYAR 443

Query: 104 ----PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS------PPPSNPPSNLPPPPP 153
                PP S  PT       S    +S P+ P   PA +      PPP+N     P    
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
             ++PP    P+ P     P  ++   K    AP             Q  P P SP    
Sbjct: 504 DDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE--QHHAQPKPRPLSPY-TM 560

Query: 214 PSNSSPNSPPPPSTK 228
             +  P + P PS  
Sbjct: 561 YEDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
            S   S  A++    +P P  +  P  +P  PS+     +  +P   P   SPP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 147 NLPPPPPSSVEPPKRSPPS 165
              P P          P  
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 34/180 (18%), Positives = 50/180 (27%), Gaps = 6/180 (3%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP--PASNPPTSSPP 90
               K +     V +PP  S   S P S P T  +    +  T S    P     + S  
Sbjct: 444 KARKKLANKTSTVMEPPYGSTESSVP-STPSTRRNDRNITSNTPSLKRTPNLTKSSLSQE 502

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
            S  + S              T    P +S     +     ++    S   S+P S    
Sbjct: 503 ASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGAN-GNASSDLSSPGSINSK 561

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
            P  SV  P      +  +        S P  +      +  S + PP      TP    
Sbjct: 562 SPEHSV--PLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 27/138 (19%), Positives = 35/138 (25%), Gaps = 12/138 (8%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
               A +          S  P     PP ++  P  P   P +          P    P 
Sbjct: 70  RVNHAPANAQEHEAARPS--PQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
           P      P  +  P  P Q P  P  +  P+    AP        P      P  P +  
Sbjct: 128 PVQQ---PAYQPQPEQPLQQPVSPQVAPAPQPVHSAP-------QPAQQAFQPAEPVAAP 177

Query: 211 APRPSNSSPNSPPPPSTK 228
            P P          P  K
Sbjct: 178 QPEPVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 3/110 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
           PP +  P ++ PPP  +    + P        P         +         +  P +  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
             +P A +    +           +  P    P   +  +        + 
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPR---PRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPP---PPVSNPPKSSPPPPPV--SKPPTTSP-- 53
           ++A +P   AA +++ PPP + P  +S P        P             +        
Sbjct: 48  LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           P +P A  P   +   A+          +    ++P P  PA +   ++  
Sbjct: 108 PAAPEAQAPAAPAERAAAENA---ARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 41/224 (18%), Positives = 59/224 (26%), Gaps = 9/224 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS---SPPPASN 83
           +P  PV+  P  +    P ++P     P   P +  P  +  P   P  S    P    N
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
            P   P         P    P            P        +P  P +     +    +
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454

Query: 144 P--PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP----SNVPP 197
              P +      +  +P  + P    PQ     P   P         A PP      V  
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE 514

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
              +     A+   P P       P   S K  S     PV + 
Sbjct: 515 KRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558

Length = 1355

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 25/159 (15%), Positives = 31/159 (19%), Gaps = 18/159 (11%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P   SP   PP +  P     P  +    + P       ++P       SP     PP  
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTP-----TGSPAA--NPPAT 100

Query: 108 SNPPTRSPPPPSSTPP-PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
              P     P   T P    P   P     N                             
Sbjct: 101 FALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRAL----------QQLQ 150

Query: 167 PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
                P        + S            P   T    T
Sbjct: 151 QRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQT 189

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 29/136 (21%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPP---PPVSNPPKSSPP-------PPPVSKPPTT 51
           +A    P  +N      P SN P  +PP    P SNPP S+PP         P S  P +
Sbjct: 411 NAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLS 470

Query: 52  SPPPSP-------------------PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           + PPS                    PA+N PT++ P A++   ++     NP  S P  S
Sbjct: 471 NAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGS 530

Query: 93  PPASSPPTISPPPPVS 108
            P       +  P   
Sbjct: 531 APYGGNAATTADPNGI 546

Length = 1560

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VAIK LK G    E  F AE  ++ ++ H  LV L    ++
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPE-AFLAEANLMKQLQHPRLVRLYA-VVT 71

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++  
Sbjct: 72  QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER 120

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 6/146 (4%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P  K    +  P+  A+ P  +++PPA +   ++P  A+  P  +  P   A++PP  + 
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKA--AAAPAKAAAAPAKAAAPPAKAAAPPAKAA 268

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            PP       + PP  +  PP    +PP+   A     +  P+     P  +  PP ++ 
Sbjct: 269 APPAK----AAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAA 324

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIA 189
                   PP  +++PP  +  AP+ 
Sbjct: 325 APPAKAATPPAKAAAPPAKAAAAPVG 350

Length = 357

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 16/89 (17%)

Query: 368 GFADQNLLGEGGFGSVYKGYL---PDGREVAIKQLKIGGGQGE-------REFKAEVEII 417
            +  +  +G G +G VYK       DG+E AIK+ K    Q         RE    + ++
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACRE----IALL 56

Query: 418 SRIHHRHLVSLVGYCISD-DRRL-LIYDY 444
             + H ++VSLV   +   D+ + L++DY
Sbjct: 57  RELKHENVVSLVEVFLEHADKSVYLLFDY 85

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            SAP+                 PP  +PP PV+ P  ++P   P + P   +  P+PPA 
Sbjct: 411 ASAPAA----------------PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             P + + P    P  +   A+  P ++P  +    +  
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P +   P  ++      +           P + +P   +  AP A P             
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA---AA 94

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRL 230
            PA+P A   + +   +        L
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
            P  +  P+       ++   P  +P +  P  P P P ++    +PP P A        
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA---AA 93

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPP 223
                PP  A+  AP  +       P
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 13/78 (16%), Positives = 23/78 (29%)

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P ++  P+   +       +    P    P+ P   PP   + + P     A  A     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 195 VPPPPTQTPPTPASPIAP 212
            PP         A+ +  
Sbjct: 98  APPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 14/72 (19%), Positives = 26/72 (36%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
              +    AA +S+P    +     +P P        + PP P +     + P +PPA+ 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 62  PPTSSSPPASSP 73
              + +  A   
Sbjct: 104 AAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPP 199
             ++  +  PPPP  S  PP  +PP   PQ     P  +PP   P A  A   +    P 
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPP--LPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 200 TQTPPTPASPIAPRPSNSSPNSPPP 224
             +PP    PI   P+ S      P
Sbjct: 573 DSSPP---PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 24/76 (31%)

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
              S  +  S P   +P P+  P   P  P +       + PS PP    PP        
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 183 SPPAPIAVPPSNVPPP 198
            P        +N PP 
Sbjct: 423 EPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPV--SKPPTTSPPPSPPASNPPTSSSPPASS--PPTSSPPPAS 82
               P +     +  P P    +PP  S  P  P   PP +  PP  +  P   +P P  
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ 130

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
            P     P  P          P P        P   +  P        P +P A   P  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQP-EPVAEPAPVM 189

Query: 143 NPP 145
           + P
Sbjct: 190 DKP 192

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSP- 78
           ++ P   +P       P  +  P  VS+P   +  P+P         +         +  
Sbjct: 51  LAPPAAAAPAAA---QPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 79  PPASNPPTSSPPPSPPASSPPTI-SPPPPVSNPPTRSPPPPSSTP 122
           P A      + P    A+            + P  R P   ++  
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           +GEG  G VYK      G+EVAIK++++   Q +     E+ I+    H ++V    
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRL-RKQNKELIINEILIMKDCKHPNIVDYYD 82

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 5e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP-PAPIAVPPSNVPPPPTQTPPTPASPI 210
           P S+  P   +  +    + P    ++    +P PAP A      PP P       A+P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 211 APRPSNSSPNSPPPPSTKRLSPPPGIP 237
           AP  + ++           ++P  G  
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 36/182 (19%), Positives = 52/182 (28%), Gaps = 13/182 (7%)

Query: 1   MSAPSPGPPAANSSS---PPPPVSNPPTI-SPPPPVSNPPKSSPPPPPVSKPPTTSPPPS 56
                     AN +S    PP  S   ++ S P    N    +   P + + P  +    
Sbjct: 440 KQRAKARKKLANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKS-- 497

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
              S    +S    S+  T          T    P+   SS   +       N  +    
Sbjct: 498 ---SLSQEASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSS 554

Query: 117 PPS--STPPPNS-PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
           P S  S  P +S P     D    +       S  P          KRSP S P ++   
Sbjct: 555 PGSINSKSPEHSVPLVRVFDIHLRASTTKGRHST-PSTNEKKKRLLKRSPLSPPKESVAT 613

Query: 174 PP 175
            P
Sbjct: 614 TP 615

Length = 619

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           PP  + P  + PPP     P   S P +P A   P                 A     ++
Sbjct: 53  PPAAAAPAAAQPPPAAA--PAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVAR----AA 106

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
            P +P A +P   +      N   R     ++ P P  P    +  
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 71

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+
Sbjct: 72  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 118

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 18/118 (15%)

Query: 375 LGEGGFGSV----YKGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLV 426
           LG G FG V    +K     G+  A+K L     +   Q E     E  I+  I H  LV
Sbjct: 9   LGTGSFGRVMLVRHK---GSGKYYALKILSKAKIVKLKQVE-HVLNEKRILQSIRHPFLV 64

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLH 482
           +L G    DD  L L+ +YVP   L+ HL   GR     A   +  AA     L YLH
Sbjct: 65  NLYG-SFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVA---RFYAAQVVLALEYLH 118

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 28/78 (35%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            S     ++     + P   P  +PP +   P++     +    S PP  + PP P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 98  PPTISPPPPVSNPPTRSP 115
           P   SP PP +       
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 8   PPAANSSSPPPPVSNPPTIS-PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
            P   S+ P  PV  PP    PP     P + +P P      P   P P  P   P +  
Sbjct: 93  QPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ---QPAYQPQPEQPLQQPVSPQ 149

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             PA  P  S+P PA       P     A  P  ++ P PV + P R
Sbjct: 150 VAPAPQPVHSAPQPA--QQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP-PTPASPIAP 212
           S+   P  +P    P +  P  S +P   + PAP   P  N    P+Q    T A+P   
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226

Query: 213 RPSNSSPNSPPPPSTKRLSPPPGIP 237
            P+     +P P     +S P   P
Sbjct: 227 APATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 374 LLGEGGFGSVYKGYL--PDGR--EVAIKQLKIGG-GQGE-REFKAEVEIISRIHHRHLVS 427
           +LGEG FGSV +G L   DG   +VA+K +K+      E  EF +E   +    H +++ 
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 428 LVGYCISDDRR------LLIYDYVPNNTLY---FHLHGEGRPV-LDWATRVKIAAGAARG 477
           L+G C            ++I  ++ +  L+    +    G P  L   T +K     A G
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125

Query: 478 LAYL 481
           + YL
Sbjct: 126 MEYL 129

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VA+K LK G    E  F  E +I+ ++ H  LV L    +S
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPE-SFLEEAQIMKKLRHDKLVQLYA-VVS 71

Query: 435 DDRRLLIYDYVPNNTLY-FHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           ++   ++ +Y+   +L  F   GEGR  L     V +AA  A G+AY+
Sbjct: 72  EEPIYIVTEYMSKGSLLDFLKDGEGR-ALKLPNLVDMAAQVAAGMAYI 118

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP--PPNSPPSPPSDP 134
           +PP A+ P  + PPP+   ++    + P     P         +       +  + P+ P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
            A +P      +                     P+   P  +++   ++  A I 
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAA-----APRPRVPADAAAAVADAVKARIE 161

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP+P   A  + +P  P       + PPP + PP     P   +       P  P A+ P
Sbjct: 381 APAPPSAAWGAPTPAAP-------AAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 63  PTSSSPPASSPPT 75
           P  S+ PA++   
Sbjct: 434 PARSADPAAAASA 446

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 52/207 (25%), Positives = 73/207 (35%), Gaps = 36/207 (17%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS----------SPPPPPVSKPPTT 51
           +AP  G   A  +  P  +  PP   PP P  +  +           SP P P    P  
Sbjct: 291 AAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLG 350

Query: 52  SPPPSPPASNPPTS--------SSPPASSPPTS---SPPPASNP--------PTSSPPPS 92
            P    P   PP+S          P  +S PT    S   A+ P          + P   
Sbjct: 351 FPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAP 410

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
            PAS P     P P S PP  + P PS+ P  +  P+PP       P    P     P P
Sbjct: 411 VPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPP-------PERQPPAPATEPAP 463

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSP 179
               +  +++  ++  + PP PP +  
Sbjct: 464 DDPDDATRKALDALRERRPPEPPGADL 490

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
           P P P   +P   +  +  P  P P PS+ P   +        P      P   PP P +
Sbjct: 362 PVPAPQPAKP---TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418

Query: 209 PIAPRPSNSSPNSPP---PPSTKRLSPPPGIP 237
           P  P    S+P       P   K    PP  P
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 48/192 (25%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 2   SAPSPGPPAANSSSPPP--PVSNPPTISPPP---PVSNPPKSSPPPPPVSKPPTTSP--- 53
           ++P P PP+++ +S      V+ P      P     SN P+  P      K    SP   
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443

Query: 54  -----PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS---PPPSPPASSPPTISPPP 105
                PP+ P+   PT  SP  SS  +    P + P T++     P P    P +     
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS--NLPPPPPSSVEPPKRSP 163
               PPT SP P +         +       NS PP+      +   P P  + P     
Sbjct: 504 DDLKPPT-SPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMYE 562

Query: 164 PSVPPQNPPPPP 175
              PP +P P P
Sbjct: 563 DLKPPTSPTPSP 574

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 15/78 (19%), Positives = 26/78 (33%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P    +    +  P    P  +  PPP   +P       +    +PP + + P    P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 77  SPPPASNPPTSSPPPSPP 94
              P+  PP ++    P 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 35/198 (17%), Positives = 52/198 (26%), Gaps = 25/198 (12%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
                 +       + + P+SS   +         P SN   S    +P + S    +  
Sbjct: 379 SISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVS-SRRVGTPGSKSDRVGAVL 437

Query: 105 P------PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP-PSSVE 157
                  P         P   S     S  SP S      PPP          P      
Sbjct: 438 LRRMNIKPTLASIPDEKPSNISVFED-SETSPNSSTLLRDPPPKKCGEESGHLPNNPFFN 496

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
             K +  S+PP +P     + P  + P + I+                  S      S S
Sbjct: 497 KLKLTLSSIPPLSPRQSIITLPTPSRPASRIS----------------SLSLRLGSYSGS 540

Query: 218 SPNSPPPPSTKRLSPPPG 235
             + PP P+        G
Sbjct: 541 IVSPPPYPTLVSRKGAAG 558

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-STPPPNSPPSPPSDP 134
           ++ P       ++ P    A+     +PP   +  P ++   P+ +  PP    +PP+  
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS--PPAPIAVPP 192
            A     + PP+    PP  +  PP ++  +       P  +++ P  +  PPA  A PP
Sbjct: 268 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP 327

Query: 193 SNVPPPPTQTPPTPASPIA 211
           +    PP +    PA   A
Sbjct: 328 AKAATPPAKAAAPPAKAAA 346

Length = 357

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLKIG-GGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            G C  D      LI +++P+ +L  +L    +  ++   ++K A    +G+ YL
Sbjct: 72  KGICTEDGGNGIKLIMEFLPSGSLKEYL-PRNKNKINLKQQLKYAVQICKGMDYL 125

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKA--EVEIISRIHHRHLVSLVG 430
           ++GEG +G V K      G  VAIK+ K      + +  A  EV+++ ++ H ++V+L  
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                 R  L+++YV    L   L       L             + +AY H
Sbjct: 68  AFRRKGRLYLVFEYVERTLL--ELLEASPGGLPPDAVRSYIWQLLQAIAYCH 117

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 53  PPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
           PP        P        +P  ++ P A+    ++  P+   ++ P  +        P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 113 RSPPPPSSTPPPNS 126
            +P P       NS
Sbjct: 451 AAPQPA---VRLNS 461

Length = 598

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 5/187 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
            P   P K +     +          S P      +   P     +     A++   S  
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
                     + S  P         PPP  S+    S P+              P    P
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN-----VPPPPTQTPP 204
              P +  PPK +  + P   P P P  +P     P P   P        VPP    TP 
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPA 939

Query: 205 TPASPIA 211
             A+ +A
Sbjct: 940 PSAAALA 946

Length = 1352

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 37/182 (20%), Positives = 48/182 (26%), Gaps = 12/182 (6%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P PG         P     PP +     +   P + P  P   + P     P        
Sbjct: 111 PRPGRRPYEGYGGPRADDRPPGLPRQDQL---PTARPAYPAYQQRPEPGAWPRAADDYGW 167

Query: 64  --TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-- 119
                  P  +P      PAS  P       P  +  P         + P      P   
Sbjct: 168 QQQRLGFPPRAPY---ASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRD 224

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
            T  P  PP           PP    + + P  PS+  P    P   P   P  P +   
Sbjct: 225 RTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAP--GPGEPTARLN 282

Query: 180 PK 181
           PK
Sbjct: 283 PK 284

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 9e-06
 Identities = 19/75 (25%), Positives = 26/75 (34%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                AN+S+P  P   P    PP P+      +        PP     P  P    PT 
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 66  SSPPASSPPTSSPPP 80
            SP   +   ++PP 
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
             +PP A+    +   P+ P   PP  +PP P + P   +   P+  P P +  +PP+  
Sbjct: 381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 135 PANSPPPSNPPS 146
              +   S    
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
            S      +    PPQ  PPPP+ +PP   P A  A PP+  PPPPT T  +  +P    
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTAT-APPPTPPPPPPTATQASSNAPAQIP 571

Query: 214 PSNSSPNSPPPPSTKRLSPPP 234
             +S P   P   T   +   
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 28/78 (35%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P   +S    +S P  P   P  + PP     S P T  +    SPP +   P    P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 88  SPPPSPPASSPPTISPPP 105
              PSP   +    +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P    +    +  P + TP PN  P P    P  S P +   +  P PPP+   PP   P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP--SAPKTKQAATTPSPPPAKASPPI--P 416

Query: 164 PSVPPQNPPPPPSSSPPKNSPP 185
               P  P P P ++     P 
Sbjct: 417 VPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
            +      +   PP   P   PP   P PP   P   +PP     PP       +  P  
Sbjct: 513 QSGSASNTAKTPPP---PQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 206 PASPIAPRPSNSSPNSPPPPSTKRLSP 232
             +  +P P      +P P        
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 31/119 (26%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP---PNSPPSPPSDPPANSPPP 141
                 PSP  S       P P    P R P P     P   P   PSP S P     PP
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 142 SNPPSNLPPPPPSSVEPPKRS-PPSV---------------PPQNPPPPPSSSPPKNSP 184
               + LPP P +S      S  P V                 +  P   SSS    + 
Sbjct: 436 VARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

Length = 620

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 8/163 (4%)

Query: 53  PPPSPPASN-PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           PP  P AS  PP +                S+ P     P           P P   + P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
           ++ P   + +  P  P  P    P +   P  P        P+  + PK       P++P
Sbjct: 570 SKIP---TLSKKPEFPKDPKH--PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSP 624

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
             P S   PK  PP      P    P   +   +P  P +P+P
Sbjct: 625 KRPESPKSPKRPPPPQRPSSPER--PEGPKIIKSPKPPKSPKP 665

Length = 943

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 36/226 (15%), Positives = 57/226 (25%), Gaps = 15/226 (6%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
           +S P S     PP S      S      P + +    +         P   S P    + 
Sbjct: 398 SSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSN 457

Query: 111 PTRSPPP---PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP--PKRSPPS 165
            +        P+S+     PP        +   P+NP  N      SS+ P  P++S  +
Sbjct: 458 ISVFEDSETSPNSSTLLRDPPPKKC-GEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIIT 516

Query: 166 VPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-------SPIAPRPSNSS 218
           +P  + P    SS          ++      P                 S I        
Sbjct: 517 LPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRY 576

Query: 219 PNSPP--PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
              P   P    +          S+  +P                N
Sbjct: 577 NLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPRFDHEN 622

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 11/82 (13%), Positives = 29/82 (35%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
           +++ PA++P  ++P   +   + +P  +   +          V+          +  P  
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAA 227

Query: 125 NSPPSPPSDPPANSPPPSNPPS 146
            + P   +  P +    S P +
Sbjct: 228 PATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +P P A   ++P    S  P ++  P  +  P+ +    P      T+  P+P A   
Sbjct: 173 ATTPAPAAPVDTTPTN--SQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230

Query: 63  PTSSSP-PASSPPTSSPPPASNP 84
           P  ++P P      S+P    N 
Sbjct: 231 PDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 21/132 (15%)

Query: 372 QNLLGEGGFGSVYKGYL-PDGREV--AIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           ++++GEG FG V +  +  DG ++  AIK LK    + + R+F  E+E++ ++ HH +++
Sbjct: 7   EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNII 66

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHL---------------HGEGRPVLDWATRVKIA 471
           +L+G C +     +  +Y P   L   L               HG     L     ++ A
Sbjct: 67  NLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTAS-TLTSQQLLQFA 125

Query: 472 AGAARGLAYLHE 483
           +  A G+ YL E
Sbjct: 126 SDVATGMQYLSE 137

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 370 ADQNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRH 424
             Q ++G G FG V++G L  P  +E  VAIK LK G  + +R +F +E  I+ +  H +
Sbjct: 8   TKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN 67

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL--YFHLH-GEGRPVLDWATRVKIAAGAARGLAYL 481
           ++ L G        ++I +Y+ N  L  Y   H GE          V +  G A G+ YL
Sbjct: 68  IIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSY----QLVGMLRGIAAGMKYL 123

Query: 482 HE 483
            +
Sbjct: 124 SD 125

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 3   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61

Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGE---GRPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 62  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 118

Query: 471 AAGAARGLAYLHE 483
               A+G+ YL E
Sbjct: 119 ----AKGMNYLEE 127

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 21/131 (16%)

Query: 373 NLLGEGGFGSVYKGYLP-DGREV--AIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLVS 427
           +++GEG FG V K  +  DG  +  AIK++K    + + R+F  E+E++ ++ HH ++++
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL---------------HGEGRPVLDWATRVKIAA 472
           L+G C       L  +Y P+  L   L               +      L     +  AA
Sbjct: 61  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS-TLSSQQLLHFAA 119

Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 120 DVARGMDYLSQ 130

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 391 GREVAIKQLKIGGGQGERE---FKAEVEIISRIHHRHLVSLV--GYCISDDRRLLIYDYV 445
           G EVAIK L+    + E +   F+ E  + +R++H ++V+L+  G          +++YV
Sbjct: 3   GHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEA-PPGLLFAVFEYV 61

Query: 446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           P  TL   L  +G   L      ++       LA  H
Sbjct: 62  PGRTLREVLAADG--ALPAGETGRLMLQVLDALACAH 96

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 29/125 (23%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-----FKAEVEIISRIHHRHLVSL 428
           +GEG +G VYK      G  VA+K++++   + E+E        E++++ ++ H ++V L
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRM---ENEKEGFPITAIREIKLLQKLRHPNIVRL 63

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR--------GL 478
                S  +    ++++Y+ ++        E          VK      +        GL
Sbjct: 64  KEIVTSKGKGSIYMVFEYMDHDLTGLLDSPE----------VKFTESQIKCYMKQLLEGL 113

Query: 479 AYLHE 483
            YLH 
Sbjct: 114 QYLHS 118

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 30/83 (36%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
           S  +      PPPP  SPP  +P  P+  P +  PPP    PP  A+  +       P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 222 PPPPSTKRLSPPPGIPVPSTENT 244
             PP      P P     S+   
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           P   +S     S P   +  P  SPP  P  P A     +    + PP   S   P    
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           P    P  P    ++ P  N       +  + +  P T+
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQI-LAKLELPSTR 458

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
            S         +    P+  P+  PPP P     PK    +  P  PP   S   P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 185 PAPIAVPPSNVPPPPTQTPPT 205
           P     P    P      PP+
Sbjct: 421 PTE---PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/126 (24%), Positives = 37/126 (29%), Gaps = 9/126 (7%)

Query: 20  VSNPPTISPPPPVSNPPKSSP----PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           V                + SP     PP  S  P       P A  PP  +  PA   P 
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 76  SSPPPASNPPTSSP---PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN--SPPSP 130
               PA  P    P   P SP  +  P      P        P  P + P P   + P+P
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAP 187

Query: 131 PSDPPA 136
             D P 
Sbjct: 188 VMDKPK 193

Length = 333

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 33/186 (17%), Positives = 48/186 (25%), Gaps = 11/186 (5%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP---------PVS 108
           P  N    + P A +   ++   +   P      +PP +S       P         P +
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368

Query: 109 NPPTRSPPPPSSTPPPN-SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
             P  +P P         + P+   + P   P     P   P     + +P     P  P
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP 428

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP-ASPIAPRPSNSSPNSPPPPS 226
            Q P   P+   P            S   P  T         P A  P    P       
Sbjct: 429 AQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQP 488

Query: 227 TKRLSP 232
                P
Sbjct: 489 VVEPEP 494

Length = 1355

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 34/150 (22%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSP 139
           A  P   SP   PP +  P   P P           P       N+P  SP ++PPA   
Sbjct: 45  AEFPWDPSPQAPPPVAQLPQ--PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFA 102

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP---PSNVP 196
            P+ P        P  + P +   P +  QNP   P   P +      +      P++  
Sbjct: 103 LPAGPAGPTIQTEPGQLYPVQV--PVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQ 160

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
            P  Q                 PN   PP 
Sbjct: 161 LPSQQQSAQKNDES---QLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 22/153 (14%), Positives = 33/153 (21%), Gaps = 8/153 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP-PPPPVSKPPTTSPPPSP---- 57
           +P   PP A    P P       +   P       ++P   P  + P T + P  P    
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111

Query: 58  --PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
                        P       +  P   P                 S   P      +  
Sbjct: 112 IQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKN 171

Query: 116 PPPSSTPPPNSPPSPP-SDPPANSPPPSNPPSN 147
                   PN    P  +D   +    +     
Sbjct: 172 DESQLQQQPNGETPPQQTDGAGDDESEALVRLR 204

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 35/214 (16%), Positives = 53/214 (24%), Gaps = 16/214 (7%)

Query: 1   MSAPSPGPPAANSSS--PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP 58
           M+ P  GP +  SS     P   +    +      N   +    P       +    S  
Sbjct: 407 MTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSET 466

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
           + N  T    P             N P  +      +S PP       ++ P    P   
Sbjct: 467 SPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASR 526

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS---SVE--------PPKRSPPSVP 167
            S+          S       P     S       S   SV              P  +P
Sbjct: 527 ISSLSLRLGSYSGSIVSPPPYP--TLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIP 584

Query: 168 PQNPPPPPSSSPPKN-SPPAPIAVPPSNVPPPPT 200
                   ++S  ++ S P+P  V       P  
Sbjct: 585 ALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPRF 618

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           P+PP+++    +P  P + PP  +PP      PP +P  P +  PA +P P    +  PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPP-----VPPAAPARPAAARPAPAPAPPAAAA--PP 434

Query: 151 PPPSSVEPPKRSPPS 165
              +       +   
Sbjct: 435 ARSADPAAAASAGDR 449

Length = 576

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
           P      K++ P    + P   + PP+  A+ P  +++ PA +   + P  A+ PP  + 
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKA--AAPPAKAAAPPAKAA 268

Query: 90  PPSPPASSPP--TISPPPPVSNPPTRSPPPPSST-PPPNSPPSPPSDPPANSPPPSNPPS 146
            P   A++PP    +PP   + PP ++   P+     P    + P+   A     + PP+
Sbjct: 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 328

Query: 147 NLPPPPPSSVEPPKRS 162
               PP  +  PP ++
Sbjct: 329 KAATPPAKAAAPPAKA 344

Length = 357

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPT-TSPPPSPPAS 60
           +A +    AA  ++ P    +    +P    + P K++ PP   +  P   +  P+  A+
Sbjct: 196 AAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAA 255

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P  +++PPA +   + P  A+ PP  +  P   A++PP  +     + P   +  P  +
Sbjct: 256 PPAKAAAPPAKA--AAPPAKAAAPPAKAAAPPAKAAAPPAKA----AAAPAKAAAAPAKA 309

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              P    +PP+   A     + PP+    PP  +   P
Sbjct: 310 AAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 21/70 (30%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P      PP    +P +   A +P  +        P  +    P  +  +  P  P  
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 174 PPSSSPPKNS 183
            P  +   NS
Sbjct: 452 APQPAVRLNS 461

Length = 598

>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 45/225 (20%), Positives = 67/225 (29%), Gaps = 13/225 (5%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
           T +   S P +N   SS        + SP        SS   +  A + P+ +PPP +S 
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSP 231

Query: 110 PPTRSPPPPSSTPPPNS-------PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
               S    S  P   S         S   +   +         NL     + V     S
Sbjct: 232 NNLFSTSDLSPLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNVS 291

Query: 163 PPSVPP---QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S+           P+ SP   S      +P S+     T+   T  +P    PS  +P
Sbjct: 292 SSSLAFSALNGKEVSPTGSPSTRSFARV--LPKSSPNNLLTEILTTGVNPPQSLPSLLNP 349

Query: 220 NSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
                 ST          +   +N   N  +  S    SS   + 
Sbjct: 350 VF-LSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSP 393

Length = 777

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP-PPPVSNP----PTRSPPP 117
           P+ +   AS    + P   +     S PP   ++S    +   PP +      PT  P  
Sbjct: 87  PSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTA 146

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             +TP     P          P PS P ++
Sbjct: 147 QPATPDERRSPRQRPPVSGEPPTPSTPDAH 176

Length = 226

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 11/121 (9%)

Query: 369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKA--EVEIISRIHHRHL 425
           F   N +G+G FG V+K     D R  A+KQ+ +         +A  E  +++++   ++
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGE-GRPVLD---WATRVKIAAGAARGLAYL 481
           +      +   +  ++ +Y  N  L+  L  + GRP+ +   W    +       GLA+L
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVW----RFFIQILLGLAHL 117

Query: 482 H 482
           H
Sbjct: 118 H 118

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRIHHRHLV 426
             LGEG +  VYK      GR VAIK++K+G  +  ++   F A  E++++  + H +++
Sbjct: 6   KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNII 65

Query: 427 SLVGYCISDDRRLLIYDY 444
            L+          L++++
Sbjct: 66  GLLDVFGHKSNINLVFEF 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 375 LGEGGFGSVYKG--YLP---DGREVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGE  FG +YKG  YLP     + VAIK LK I   Q   EF+ E  +++ +HH ++V L
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCL 72

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHL---------------HGEGRPVLDWATRVKIAAG 473
           +G    +    ++++Y+    L+  L                G  +  LD    + IA  
Sbjct: 73  LGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQ 132

Query: 474 AARGLAYL 481
            A G+ YL
Sbjct: 133 IAAGMEYL 140

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 29/128 (22%), Positives = 34/128 (26%), Gaps = 9/128 (7%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S  PP   +  P               P P PV  P  T+ P          +   P   
Sbjct: 633 SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRV-------ARGDPVRP 685

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
               +   A   P    PP      PP    P      P  S    S T PP   P PP 
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPP--EPEPPG 743

Query: 133 DPPANSPP 140
              A+   
Sbjct: 744 AEQADGAE 751

Length = 753

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P A  S          PT +P P     P     P       T SPPP   AS P    +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPP-AKASPPIPVPA 419

Query: 68  PPASSPPTSSPPPASNPPTS 87
            P    PT     A+ PP+ 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           PS       ++S P   +  P  SPPP    P          +  P  +    P      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 64  TSSSPPASSPPTSSPPPASN 83
            +   P      ++ PP+ N
Sbjct: 421 PTEPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 31/188 (16%), Positives = 39/188 (20%), Gaps = 18/188 (9%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
              A       PP +  PT + P     P        P     T +P  SP A     S 
Sbjct: 60  KSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSE 119

Query: 67  S-------PPASSPPTSSPP----PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
                     A  P                 SS    PP S     S   P +   + + 
Sbjct: 120 GVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAAL 179

Query: 116 PPPSSTPPPNSP-------PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                               S  S    N P      +   P    S             
Sbjct: 180 FKDDEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRFEGEDENLE 239

Query: 169 QNPPPPPS 176
           +N  P   
Sbjct: 240 RNLQPQSP 247

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
              PP+       P         P   + P   +  P +  P       P     A + P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP-DAAAAAAAP 446

Query: 141 PSNPPSNLPPPPPSSVE 157
           P+   +  P    +S E
Sbjct: 447 PAPAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGRE-VAIKQLKIGGGQGEREFK---AEVEIISRIHHRH 424
           F D   +G G FG+VY        E VAIK++   G Q   +++    EV  + ++ H +
Sbjct: 17  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN 76

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR----VKIAA---GAARG 477
            +   G  + +    L+ +Y           G    +L+   +    V+IAA   GA +G
Sbjct: 77  TIEYKGCYLREHTAWLVMEYCL---------GSASDILEVHKKPLQEVEIAAICHGALQG 127

Query: 478 LAYLHEDCK 486
           LAYLH   +
Sbjct: 128 LAYLHSHER 136

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 18/120 (15%)

Query: 374 LLGEGGFGSVYKG--YLPDGR--EVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSL 428
            LG+G FG V +G      G+   VA+K LK         +F  E  I+  + H +L+ L
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL 61

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVL------DWATRVKIAAGAARGLAYLH 482
            G  +     +++ +  P  +L   L  +           D+A ++      A G+ YL 
Sbjct: 62  YG-VVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQI------ANGMRYLE 114

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 44/221 (19%), Positives = 64/221 (28%), Gaps = 10/221 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P AA S      + N    SP    +    ++  P P         P +  A  P  ++S
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPR--------PEAETAQTPVQTAS 411

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
             A      +  P SN   +  PP   A      +     ++  +      + TPP N  
Sbjct: 412 AAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQV 471

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
               +       P S  PS  P     + E  +    +      P      P  + PP  
Sbjct: 472 SKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPED 531

Query: 188 IA--VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
            A   PP      P  T    A   A        N+P  P 
Sbjct: 532 GAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPP 572

Length = 709

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
            +   S    +   ++P     P P   P   S P         SPP   + PP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 142 SNPPSNLPPPPPSSVEPP 159
                +  PP  ++  PP
Sbjct: 421 P-TEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 17/77 (22%), Positives = 27/77 (35%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           S          +   P P   P     P  P A     +++ P+  P  +SPP       
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 87  SSPPPSPPASSPPTISP 103
           + P P+PPA++      
Sbjct: 422 TEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP-PSNPPSNLPPPPPSSVEPPKR 161
               V+  P  SP      P P   P P   P    P  P   P+ L  P P+S   P++
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEP-DLPQPDRHPGPAKPEAPGARPAEL--PSPASAPTPEQ 432

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            PP       PP P +S P+N       V   +            +     + S+S    
Sbjct: 433 QPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQ 492

Query: 222 PP 223
             
Sbjct: 493 TG 494

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 17/222 (7%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P  T+  P+ P+  P ++    +++ PTS  P  +   T     SP + +    +   P 
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRT----TSATPN 498

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +  PT +   P++T P     S   +  + +P      +    PP  +   P  + P V 
Sbjct: 499 ATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVT 558

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            ++P    ++    ++P    +   +      +   PT   P  P  S+S+P S    ++
Sbjct: 559 EESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSS--PTSQQPGIPSSSHSTPRS----NS 612

Query: 228 KRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAG 269
              +P      P+       G    + E+ S PS   + T  
Sbjct: 613 TSTTPLLTSAHPT-------GGENITEETPSVPSTTHVSTLS 647

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN--------- 182
           SD  A +PP +  P+     PP +  P   S P+ P   P P       +          
Sbjct: 46  SDLAALAPPAAAAPA--AAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVA 103

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
              AP A        P  +     A+    R + ++P    P     
Sbjct: 104 RAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 29/149 (19%), Positives = 39/149 (26%), Gaps = 6/149 (4%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S  PPA     S P  SP AS         P     T    P ++    ++P  PP  
Sbjct: 648 PPSRAPPA---SLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVP 704

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
            P + PP    P         +         SV   +     +             V   
Sbjct: 705 DPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQ---QATHQPQVQAE 761

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
              P  T      +S +     N    S 
Sbjct: 762 AQSPASTTALTQTSSEVQDTELNLVLLSS 790

Length = 944

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 16/103 (15%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
           S+T  P + P+P +           P     P             P+V PQ       S 
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAP------------APAVDPQQNAVVAPSQ 214

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
              ++   P    P+     P    P P          + PN+
Sbjct: 215 ANVDTAATPAPAAPA----TPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST---PP 123
           S P  +  T+ P     P          + +P   + P P  +P   +   PS       
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP 151
               P+ P+ P   +P P++      P 
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 11/71 (15%), Positives = 19/71 (26%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           +  PP P            +P A     +    A++P    P  A      +   +    
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 97  SPPTISPPPPV 107
           +P     P   
Sbjct: 448 APAAAPQPAVR 458

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
           PP    +         + P      + +P   +    +PP A+ PP  +P   PP  +P 
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP-TPV 182

Query: 100 TISPPPPVSNPPTR 113
             + P     P +R
Sbjct: 183 ARADPRETRVPMSR 196

Length = 418

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 28/166 (16%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP---PPPPVSKPPTTSPPPSPPASNP- 62
           G  + +S +   P +   T            + P     PP+S  PT + PP  P     
Sbjct: 83  GSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQR 142

Query: 63  ---------------------PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                                  ++    S+ PT    PA+  P+        A + PT 
Sbjct: 143 IELPGNISDALSQQQGQVNAASQNAQGNTSTLPT---APATVAPSKGAKVPATAETHPTP 199

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
              P    P        +   PP +   P S   +     S P S+
Sbjct: 200 PQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPASH 245

Length = 327

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 374 LLGEGGFGSVYKG-YL---PDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
            +GEG FG VY+G Y+    +   VA+K  K       RE F  E  I+ +  H H+V L
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +G   +++   ++ +  P   L  +L    +  LD A+ +  +   +  LAYL 
Sbjct: 73  IGVI-TENPVWIVMELAPLGELRSYLQVN-KYSLDLASLILYSYQLSTALAYLE 124

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           LG+G  G VYK  + P G+  A+K++ + G  +  ++   E++ +      ++V   G  
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAF 68

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRV--KIAAGAARGLAYLH 482
             +    ++ +Y+   +    L    + V      V   IA    +GL YLH
Sbjct: 69  YKEGEISIVLEYMDGGS----LADLLKKVGKIPEPVLAYIARQILKGLDYLH 116

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 41/162 (25%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           P   V+   T S P   S P   S  +P S P       +     L    P   +    +
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQ--GTT 225

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP-----PPTQTPPTPASPIAPRPSNS 217
             S P     PPPS   P  SP  P +    +          TQ   TP +    R  +S
Sbjct: 226 TSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHS 285

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
           +  + PPP+TKR       P P+     G+    SSP    +
Sbjct: 286 T--ATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQA 325

Length = 408

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
            S         +    P  +  P   P P   S P T     +P       S   P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 74  PTSSPPPASNPPTSSPPPS 92
           PT   P       ++PP  
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQN---PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
              P PP ++   P  + P+ PP     P PP + + P  + PAP   PP+   PP    
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 203 PPTPASPIAPR 213
            P  A+    R
Sbjct: 439 DPAAAASAGDR 449

Length = 576

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 10/127 (7%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
             PP    A   P  +    +  P    P     P  +  PS  A   P    P      
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPV--RPTAHHAA 691

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
             R+P  P        P  PP       PPP  P +  P P  SS+     +PP   P  
Sbjct: 692 L-RAPQAP-------RPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPG 743

Query: 171 PPPPPSS 177
                 +
Sbjct: 744 AEQADGA 750

Length = 753

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S   P P S PP   P          +    P       +  P+ PA++  +  S  A +
Sbjct: 302 SDPEPLPASLPP--PPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQN 359

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
             + S  P S+   +S          P +     + + P    P  +S P P S P
Sbjct: 360 KDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMP---SPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 2/115 (1%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPP--PPVSKPPTTSPPPSPPASNPPT 64
           G  A + S+   P S      P P    P  ++P     P S  P T  P + P+   P 
Sbjct: 377 GASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPW 436

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
             +PPA       P PA   P +SP P  P S       PP + +P   +   PS
Sbjct: 437 DDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPS 491

Length = 624

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 10  AANSSSPPP-----PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           AAN+++P       P S PP+     P S P  ++PP   V  P  T    +P ++   T
Sbjct: 27  AANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVET 86

Query: 65  SSSPPASSPPTSSPP 79
             SP     PT   P
Sbjct: 87  PQSPTTKQVPTEINP 101

Length = 291

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 57/265 (21%), Positives = 86/265 (32%), Gaps = 39/265 (14%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN--------PPTS 87
            +  P        P+++P P+  +S   +SSS   SS  + S   +S+        P T+
Sbjct: 374 TEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTA 433

Query: 88  SPPPSPPAS------------SPPTISPPPPVSNPP---------------TRSPPPPSS 120
           SP P PP++            +P  +SP   VS+ P                    P S 
Sbjct: 434 SPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESK 493

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS---- 176
            PPP S       P      P +       P  S   P +R+     P+ P    +    
Sbjct: 494 EPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDER 553

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +     S P  +    S   PP      T  S           + PP    ++   P  I
Sbjct: 554 TGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAEKRKYKSPSKI 613

Query: 237 PVPSTENTPGNGTNPSSPESSSSPS 261
              S E    + ++  SPE  S P 
Sbjct: 614 VPKSREFIETDSSSSDSPEDESLPP 638

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSP------PSVP---PQNPPPPPSSSPPKNSPPAPIAV 190
           P         P   +  +PP             P   P+    P    P    P  P  +
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGP--GGPLRPNGL 437

Query: 191 PPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP-STENTPGNGT 249
                P    + P   A   A +P         PP+ + L     +P P ST +  G   
Sbjct: 438 A----PMNAVRAPSRNAQNAAQKP--PMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNK 491

Query: 250 NPSSPESSSSPS 261
             +   +S++P 
Sbjct: 492 KLAQVLASATPQ 503

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 31/161 (19%), Positives = 40/161 (24%), Gaps = 16/161 (9%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPP-PVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
           +    P  PA      P                   P  +P   P S  P       P  
Sbjct: 139 LPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYD 198

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           +  P              P P  + P       P         PPP   +     P PP 
Sbjct: 199 AGRPEYDQR---RRDYDHPRPDWDRPRRDRTDRP--------EPPPGAGHVHRGGPGPPE 247

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                +  P  P  P A  P  + P     P  P++   PK
Sbjct: 248 ----RDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPK 284

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 13/78 (16%), Positives = 21/78 (26%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
            +          +    +  P P     P     P    +    S  P  +SPP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 81  ASNPPTSSPPPSPPASSP 98
            + P  + P  +  A   
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP--PSSVEPPKRSPPSVP 167
              R P      P    P + P    A +  PS   S+    P  P S   P  +PP+V 
Sbjct: 370 SGGRGPKQHIK-PVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 168 PQNPPP---PPSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
              P      P S+ P+   PA           P ++  
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEK---KIPVSKVS 464

Length = 614

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
               + P P  S +  K++P    PQ    P  + P            P++ P P  Q P
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 204 PTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENT-PGNGTNPSSPE----SSS 258
              ++P+ P P  S      P +       PG+ + S +        N S  +    SSS
Sbjct: 436 VARSAPLPPSPQAS-----APRNVASGK--PGVDLGSWQGKFMNFTRNGSRKQPVQASSS 488

Query: 259 SPSNNGIGTAGTVVI 273
             +  G+   G   +
Sbjct: 489 DAAQTGVF-EGVAEL 502

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 22/114 (19%), Positives = 32/114 (28%)

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
            R    P++     +    P          + P   +  PP + V P     P+ P   P
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPP 225
              P+  P    P      P     P P  + P PA          +   P P 
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPV 182

Length = 333

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 44/205 (21%), Positives = 57/205 (27%), Gaps = 24/205 (11%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           PGP   +  S  P +S  P     P     PK    P    +P +   P  P +   P  
Sbjct: 561 PGPAKEHKPSKIPTLSKKPEF---PKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPEL 617

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
              P S     SP     PP    P SP     P I              PP S  PP +
Sbjct: 618 LDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKI---------IKSPKPPKSPKPPFD 668

Query: 126 ------------SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                          +   +         +  S L    P +   P  +P  +PP+ P  
Sbjct: 669 PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRD 728

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPP 198
                 P   P A          PP
Sbjct: 729 EEFPFEPIGDPDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            +  P ++P P+ P  + PT S  P V+  P   P          +P     D  A   P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPA--PAVDPQQNAVVAPSQANVDTAATPAP 225

Query: 141 PSNPPSNLPPPPPSSVEPPKRSP 163
            +    +   P P+         
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           PP+       PP     P +    + P ++    +   P +          ++  PP   
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 128 PSPPSDPPANS 138
            +P      NS
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 21/134 (15%), Positives = 30/134 (22%), Gaps = 2/134 (1%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
            PP             +   P     P      P +  +     P  +  PP      SS
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           P     ++SP  +                 SS             P             +
Sbjct: 115 PRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPS--ESLKVKNGGKV 172

Query: 149 PPPPPSSVEPPKRS 162
            P   S  +  KRS
Sbjct: 173 YPKGFSKHKTHKRS 186

Length = 580

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP----ASSPPTISPP 104
            +TS   S P S+     S    S   SS P   N P S P  SP     +SS   +S  
Sbjct: 8   GSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQ 67

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
            P S    R      S P   SP +  S   + +   S   S+ P     +      S
Sbjct: 68  RPSSLSRGRLSSRFVS-PSRGSPSAAASLNGSLA-TASTSGSSSPSRSRRTTSSDLSS 123

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 27/136 (19%)

Query: 375 LGEGGFGSVYK----GYLPDGRE--VAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVS 427
           +G+G FG V++    G LP      VA+K LK       + +F+ E  +++   H ++V 
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVK 72

Query: 428 LVGYCISDDRRLLIYDYV--------------------PNNTLYFHLHGEGRPVLDWATR 467
           L+G C       L+++Y+                     ++T      G     L    +
Sbjct: 73  LLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQ 132

Query: 468 VKIAAGAARGLAYLHE 483
           + IA   A G+AYL E
Sbjct: 133 LCIAKQVAAGMAYLSE 148

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 54/221 (24%), Positives = 75/221 (33%), Gaps = 13/221 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP-PASN 61
            P P  P        PP S  PT     P S+ P SS     V+KP      PSP  ASN
Sbjct: 367 VPRPLSPYTAYEDLKPPTSPIPT-----PPSSSPASSKSVDAVAKPAEPDVVPSPGSASN 421

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P        +  T    P +      PP SP  ++P  +SP    ++     P     T
Sbjct: 422 VPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVP----DT 477

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            P  +     + PPAN  P S         PP+S  P        P          +   
Sbjct: 478 APATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGN--- 534

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
           ++PP  +A    +  P P    P         P++ +P+  
Sbjct: 535 SAPPTALADEQHHAQPKPRPLSPYTMYEDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P         P     + PP +++PP   P   + P A+ P  +  PP+  A    +  P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP-PAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 104 PPPVSNPPT 112
               S    
Sbjct: 441 AAAASAGDR 449

Length = 576

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 371 DQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           ++N++  G  G+ YKG  + +G +  +K++         E       + ++ H ++V L+
Sbjct: 694 EENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIAD----MGKLQHPNIVKLI 749

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           G C S+    LI++Y+    L   L       L W  R KIA G A+ L +LH  C
Sbjct: 750 GLCRSEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRC 800

Length = 968

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 368 GFADQNLLGEGGFGSVYK-GYLPDGREVAIKQLKIGG-GQGEREFKA-EVEIISRIHHRH 424
            F     LG+G +GSVYK   L D +  A+K++ +G   Q ERE    E+ I++ ++H +
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHL---HGEGRPV---LDWATRVKIAAGAARGL 478
           ++S     +  ++  ++ +Y P   L   +     + + +     W   +++     RGL
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQL----LRGL 116

Query: 479 AYLHE 483
             LHE
Sbjct: 117 QALHE 121

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           +GEG FG+V +G Y   G++VA+K +K       + F  E  +++++HH++LV L+G  I
Sbjct: 14  IGEGEFGAVLQGEYT--GQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLG-VI 68

Query: 434 SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
             +   ++ + +    L   L   GR ++     ++ +   A G+ YL
Sbjct: 69  LHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYL 116

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 51/231 (22%), Positives = 75/231 (32%), Gaps = 44/231 (19%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSP----PPSPPASSPPTISPPPPVSNPPTRS 114
            S+P        + PP         P T+      PP P A++P   + PP        +
Sbjct: 244 ISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALA 303

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSP--------------PPSNPPSNLPP------PPPS 154
             P +   PP+ PP  P+                     P  + P   P        PPS
Sbjct: 304 GAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPS 363

Query: 155 SVE-------PPKRSPPSVPPQNPPP---------PPSSSPPKNSPPAPIAVPPSNVPPP 198
           S+E        PKR+      +             P      + + P P +VP     P 
Sbjct: 364 SLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423

Query: 199 PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGT 249
           P   PP PA+P+ P     S + P PP  ++   PP        + P + T
Sbjct: 424 PASAPPPPATPL-PSAEPGSDDGPAPPPERQ---PPAPATEPAPDDPDDAT 470

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           P   PQ   P  ++  P    PAP   P +          P   +   P P    P +PP
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA-TPPPVPPRPVAPP 420

Query: 224 PPSTKRLSPP-PGIPVPSTE 242
            P T   +P      +P  E
Sbjct: 421 VPHTPESAPKLTRAAIPVDE 440

Length = 585

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 14/122 (11%)

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           +PPA++ P  + PPP + P   S P   + P     P    +                  
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRP---AAPAAEPAP-WLVEHAKRLTAQREQLVARAAA 107

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           P +  E    + P+            +    + P          P  P       A  + 
Sbjct: 108 PAAP-EAQAPAAPAERAAAENAARRLARAAAAAPR---------PRVPADAAAAVADAVK 157

Query: 212 PR 213
            R
Sbjct: 158 AR 159

Length = 484

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 32/188 (17%), Positives = 45/188 (23%), Gaps = 16/188 (8%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN-PPTRSPPPPSSTPPPNSP-- 127
           S   + S          +P  SP +S   T     P SN    R   P S +    +   
Sbjct: 379 SISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLL 438

Query: 128 ------PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                 P+  S P       S    +   P  S      R PP             + P 
Sbjct: 439 RRMNIKPTLASIPDEKPSNISVFEDSETSPNSS---TLLRDPPP-KKCGEESGHLPNNPF 494

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
            +         S++PP   +         +   S  S  S    S       P       
Sbjct: 495 FNKLKLT---LSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLV 551

Query: 242 ENTPGNGT 249
                 G 
Sbjct: 552 SRKGAAGL 559

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
           S P     ++ P  +P P      T   P  S TP   + P+P  DP  N+      PS 
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTT---PTNSQTPAVATAPAPAVDPQQNAVVA---PSQ 214

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
                 ++  P   + P      P      S P   P A
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           P    A +++     + P       P   PP +S P PP +  P    P + P   P   
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 66  SSPPASSPPTSS 77
           + P  +  P S 
Sbjct: 185 ADPRETRVPMSR 196

Length = 418

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EFK E  + SR+ H ++V 
Sbjct: 13  LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVC 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    +    +I+ Y  ++ L+
Sbjct: 73  LLGVVTKEQPLSMIFSYCSHSDLH 96

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 27/134 (20%)

Query: 375 LGEGGFGSVY------------KGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+            K +  D        VA+K L+    +  R +F  E++I
Sbjct: 13  LGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLH-------GEGRPVLDWATR 467
           +SR+   +++ L+  CI+ D   +I +Y+ N  L  +   H             + ++T 
Sbjct: 73  MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTL 132

Query: 468 VKIAAGAARGLAYL 481
           + +A   A G+ YL
Sbjct: 133 IFMATQIASGMKYL 146

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 55/197 (27%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPP---PVSKPPTTSPPPSP 57
           M    P P       P     +PP +  P P    P + PPPP   P+S  PT  PP + 
Sbjct: 343 MPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAH 402

Query: 58  PA---------SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT-------- 100
           P                + PP  +   S PP AS  P S     PP S            
Sbjct: 403 PPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGL 462

Query: 101 -ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
               PPP     T + PP +S+       + PS      P P  PP  +   P    E P
Sbjct: 463 PAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEP 522

Query: 160 KRSPPSVPPQNPPPPPS 176
           +  PP  PP++P P P+
Sbjct: 523 ESPPP--PPRSPSPEPT 537

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           + P  ++P  A  PP ++P      ++P    P P +     R               +P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAA-EPAPWLVEHAKRLTAQ--REQLVARAAAP 108

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            +        P+   +         +     + P          
Sbjct: 109 AAPEAQAPAAPAERAA--AENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           P+PP++     +    ++PP ++ PP      + P  + PA +P     PP  + PP RS
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAP----APPAAAAPPARS 437

Query: 115 PPPPSSTPPPNSPPS 129
             P       ++   
Sbjct: 438 ADP---AAAASAGDR 449

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           P   S++  P      T +P  PV   P +S  P       T   P   P  N   + S 
Sbjct: 163 PLDTSTTTDPA----TTPAPAAPVDTTPTNSQTPAV----ATAPAPAVDPQQNAVVAPSQ 214

Query: 69  PASSPPTSSPPPASNPPTSSP--PPSPPASSPPTISPPPPVSN 109
                  +  P A   P  +   P      S P   P   V N
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNALVMN 257

Length = 331

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
              T+P  +   ++P   + P A +       P     ++S         P T +     
Sbjct: 82  AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPE-ASSTSATDEAATDPPATAAARDGP 140

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           +  PT  P  P     P   P    +PP  S P ++    L
Sbjct: 141 TPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTL 181

Length = 226

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 42/191 (21%), Positives = 58/191 (30%), Gaps = 21/191 (10%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P       S   +    N   S S   SS   SSP  A+N            ++PP    
Sbjct: 61  PTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDIS 120

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP-----------ANSPPPSNPPSNLPPPP 152
            PP+S  PT++ PP   TP        P +             A S       S LP  P
Sbjct: 121 APPISPTPTQAAPPQ--TPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAP 178

Query: 153 PSSVEPPKRSPPSV---PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
            +         P+     P  P  P +  P  N          +   PP T   P   + 
Sbjct: 179 ATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKT-----ATVAVPPATSGKPKSGAA 233

Query: 210 IAPRPSNSSPN 220
            A   S++  +
Sbjct: 234 SARALSSAPAS 244

Length = 327

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
           + P ++  P+S    SS      A+ P     P  V+     +    +            
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS--SSPPKNSPPAPIA 189
              P     P+  P N+ P P S+ E  + S  ++      P  S  ++P  N P +P +
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417

Length = 421

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDG-----REVAIKQLKIGGGQGERE-FKAEVEIISRI 420
           D     +LL EG FG ++ G L D       EV +K +K    + +      E  ++  +
Sbjct: 6   DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL 65

Query: 421 HHRHLVSLVGYCISD-DRRLLIYDYVPNNTLYFHL----HGEGRPVLDWATR--VKIAAG 473
            H++++ ++  CI D +   ++Y Y+    L   L     GE       +T+  V +A  
Sbjct: 66  SHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ 125

Query: 474 AARGLAYLH 482
            A G++YLH
Sbjct: 126 IACGMSYLH 134

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 16/82 (19%), Positives = 29/82 (35%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
           P     P+        S     S P        +   T +P      ++  + +P   V+
Sbjct: 74  PKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVT 133

Query: 109 NPPTRSPPPPSSTPPPNSPPSP 130
            PP+ + P P  +   ++P SP
Sbjct: 134 TPPSTNTPQPMQSTKSDTPQSP 155

Length = 356

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 166 VPPQNPPPP---------PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
             P   PP           +++   + P        ++   PP+ +P  P+ P  P   +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 217 SSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNN 263
           S  +S  PP       P      +   +P + TNPS P   ++P   
Sbjct: 206 SPSDSSLPP------APSSFQSDTPPPSPESPTNPSPPPGPAAPPPP 246

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            S+S    +PP P   PP   P PP   P   A P  P         PPPP+  + S   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP--------PPPPPTATQASSNA 566

Query: 235 GIPVPSTENTPGNGTNPSSPESSSSPSNNGI 265
              +P+  + P       +P  +   S   I
Sbjct: 567 PAQIPADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 2   SAPSPGPPAANSSSPP--PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
           +A SP P  +++++ P  P  +  P  +PP    +PP + P  PP + P    P      
Sbjct: 396 AAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKE- 454

Query: 60  SNPPTSSSPPASSPPTSSP 78
                 S   +  P T  P
Sbjct: 455 EKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 2   SAPSPGPPAANSSSP-PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            A +P P AA ++SP P   S     S P   + P   +  PP VS  P  +  P  P S
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP---AGTPPTVSVDP-PAAVPVNPPS 441

Query: 61  NPPTSSSPPASSPPTSSPP 79
             P +  P         P 
Sbjct: 442 TAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
               N  P+   +  A  P P +       PP +S +P  R P   PP+   PP  +  P
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQ----YQPPYASAQP--RQPVQQPPEAQVPPQHAPRP 121

Query: 181 KNSPPAPIAVPPSNVPPP-PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
               P P+  P     P  P Q P +P    AP+P     +S P P+ +   P   +  P
Sbjct: 122 AQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPV----HSAPQPAQQAFQPAEPVAAP 177

Query: 240 STE 242
             E
Sbjct: 178 QPE 180

Length = 333

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 32/200 (16%), Positives = 41/200 (20%), Gaps = 22/200 (11%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPP---KSSPPPPPVSKPPT--TSPPPSPPASNPPTSSSP 68
             P             PP        K    P    +          S P   P      
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSP-------------PTISPPPPVSNPPTRSP 115
               PP       +        P  P  +               T SP     +  +   
Sbjct: 186 KKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEI 245

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
              SS+      PSP    P                P +S+ PP   P S  P  P    
Sbjct: 246 SRRSSSSLKKPDPSPSMASPETRESSKRTE----TRPRTSLRPPSARPASARPAPPRVKR 301

Query: 176 SSSPPKNSPPAPIAVPPSNV 195
                       +    SNV
Sbjct: 302 KEIVTVLQDAQGVGKIVSNV 321

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPT--ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
            + + G P   + + PPP + PP    +P  P +  P  +P PP  + PP  S  P+  A
Sbjct: 385 PSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAA 444

Query: 60  SNPPT 64
           S    
Sbjct: 445 SAGDR 449

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P P S       P   + PPP + P  P  P A + P +  P+  P PP ++  P + + 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP--PAAPARPAAARPAPAPAPPAAAAPPARSAD 439

Query: 164 PSVPPQNPP 172
           P+       
Sbjct: 440 PAAAASAGD 448

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
            NS  S P D    + P + P    P  P  +     ++P       P   P  +     
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPA---PAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV--V 210

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
            P+   V  +  P P     P  A+P+   P++ +  S P      L
Sbjct: 211 APSQANVDTAATPAPAAPATPDGAAPL---PTDQAGVSTPAADPNAL 254

Length = 331

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPA--SNPPTSSPPPSPPASSPPT--ISPPPPVSNPPTRS 114
           A+ P    S  A++P  ++  PA  + PP  +      A++ P    +PP   + PP ++
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             PP+      +PP+  + PPA +   + PP+     P  +   P ++  +      PP 
Sbjct: 268 AAPPAKAA---APPAKAAAPPAKA---AAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA 321

Query: 175 PSSSPPKN--SPPAPIAVPPSNVPPPP 199
            +++PP    +PPA  A PP+     P
Sbjct: 322 KAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/121 (19%), Positives = 28/121 (23%), Gaps = 2/121 (1%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
             PP    A   P  +       P    P P         P       P           
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
              P  P    PP       PP + P     +P  +S  A    PP   PP   Q     
Sbjct: 694 --APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Query: 207 A 207
            
Sbjct: 752 N 752

Length = 753

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 22/64 (34%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P    +    +        KP   +P P PPA++ PT  +      P  +  P   P   
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 88  SPPP 91
           + P 
Sbjct: 185 ADPR 188

Length = 418

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 1/161 (0%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
             +    +S P S P      + +  A++  T+          S P P P AS PP    
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLP-ASLPPPPVR 317

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            P V +P      P  +       P+ P+   ++    S    +     P S      S 
Sbjct: 318 RPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSF 377

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
                   PP   ++  ++ P   +   P     P T    
Sbjct: 378 LEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           ++ P    ++ P  S    P S    T P P           + PA+    SS  PA+  
Sbjct: 370 SLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQG----PQGTAPAAGMTPSSAAPATPA 425

Query: 85  PTSSPPPSPP-ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P+++P P  P   +PP    PP    PP  +P  P ++P P +P S  S   +++PP   
Sbjct: 426 PSAAPSPRVPWDDAPPA---PPRSGIPPRPAPRMPEASPVPGAPDSVAS--ASDAPPTLG 480

Query: 144 PPSNLPPPPPS 154
            PS+     PS
Sbjct: 481 DPSDTAEHTPS 491

Length = 624

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 38/207 (18%), Positives = 51/207 (24%), Gaps = 18/207 (8%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSP--PPSPPASNP-PTSSSPPASS 72
            PP  +          +   P+    P      P + P     PP   P P      ASS
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           P   +   +         P   A    + S    +S          S  PP  S      
Sbjct: 115 PRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELS-----EEEEHSRPPPSESLKVKNG 169

Query: 133 ---DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-------SSPPKN 182
               P   S   ++  S        +    K S    P Q      S           + 
Sbjct: 170 GKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAET 229

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASP 209
            P       P +V  PP  T   P  P
Sbjct: 230 DPATRQVPVPVHVLYPPLLTEYVPYKP 256

Length = 580

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
           + ++G G FG V +G L  P  RE  VAIK LK G  + +R +F +E  I+ +  H +++
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNII 68

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL-YFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHE 483
            L G        ++I +++ N  L  F    +G+  V+     V +  G A G+ YL E
Sbjct: 69  HLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQL---VGMLRGIAAGMKYLSE 124

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           PP+PP  +P    P    S+   R    P  T  P +  +P   P   +P          
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQP-TVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
            P   + +P  ++P   PPQ       S    N
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQGHKRSREQGN 264

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 127 PPSPPSDPPANSPPPSNPPSN----LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           PP+PP + PA   P +   S+       P P+     +        QNP   P   P + 
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 183 SPPAPIAVPPSNVPPPPTQTPP 204
                    P N    P QT  
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY  +  +VA+K LK  G    + F  E  ++  + H  LV L      
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 72

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           ++   +I +Y+   +L   L  +    +     +  +A  A G+AY+
Sbjct: 73  EEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYI 119

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 30/131 (22%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA--------------EVEII 417
             LGEG +G V K Y    G+ VAIK++KI     +                   E++I+
Sbjct: 15  AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIM 74

Query: 418 SRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR-----VK-IA 471
           + I H +++ LV   +  D   L+ D          +  + + V+D   R     VK I 
Sbjct: 75  NEIKHENIMGLVDVYVEGDFINLVMDI---------MASDLKKVVDRKIRLTESQVKCIL 125

Query: 472 AGAARGLAYLH 482
                GL  LH
Sbjct: 126 LQILNGLNVLH 136

Length = 335

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
           S P       + P  +P  +S PT +P PP S     S  P S+    +      +    
Sbjct: 75  SKPKTGTGKVAPPAATP--TSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAP 132

Query: 137 NSPPPSNPPS 146
            SP  S P S
Sbjct: 133 ESPSTSVPSS 142

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 27/125 (21%), Positives = 35/125 (28%), Gaps = 16/125 (12%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P SS    S    S+    S  P             P I P     N P     P +  P
Sbjct: 12  PISSISFLSVVSCSTTSSNSKQP----------EKKPEIKPN---ENTPKIPKKPDNKEP 58

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
             N+     ++      P S  P   P P  +  E      P   P+ P   P +  P N
Sbjct: 59  SENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEI---EKPKDEPKKPDKKPQADQPNN 115

Query: 183 SPPAP 187
                
Sbjct: 116 VHADQ 120

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP---PSPPASN-PPTSSSPPASSP 73
           P  S+P T SP   VS+          +   P   P    P   A   P   S+ P S+ 
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 74  PTSS----PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
            + S    P PA   P+ S     P S P +              PP  +S P P   P+
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPT 228

Query: 130 PPSDPPA 136
             +  PA
Sbjct: 229 ISASQPA 235

Length = 430

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           + +LG G FG + +G L  P  RE  VAI  L+ G    +R  F AE   + +  H ++V
Sbjct: 10  ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIV 69

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            L G     +  +++ +Y+ N  L  +   H EG+  L     + +  G A G+ YL E
Sbjct: 70  RLEGVITRGNTMMIVTEYMSNGALDSFLRKH-EGQ--LVAGQLMGMLPGLASGMKYLSE 125

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 21/99 (21%), Positives = 31/99 (31%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            +     P A   ++P  P   P    P     +P    P     +  P+ +     P  
Sbjct: 683 PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             P     PA +P    PPPA  P  +     PP+    
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 22/79 (27%)

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS 231
           P    S     S PA     P+  PPP    P  P +  A    +  P    PP      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 232 PPPGIPVPSTENTPGNGTN 250
           P    P P         + 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 40/199 (20%), Positives = 56/199 (28%), Gaps = 15/199 (7%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP------PPPSST 121
           P  +  P + P   +   T++         P T +PP    + P   P       P   T
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLP-----PPPPSSVEPPKRSPPSVPPQNPPPPPS 176
             P   P+P   P  +         N P      P      P    P   P   P P   
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP 428

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +  P  +P     V  +       Q+   P S      +   P +  P       P P  
Sbjct: 429 AQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPL---YQQPQPVE 485

Query: 237 PVPSTENTPG-NGTNPSSP 254
             P  E  P    T P+ P
Sbjct: 486 QQPVVEPEPVVEETKPARP 504

Length = 1355

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 28/168 (16%), Positives = 44/168 (26%), Gaps = 12/168 (7%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           + A SP       SS       PP+ +PP  +S P  S       +              
Sbjct: 626 LDALSPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQ 685

Query: 61  NPPTSSSPPASSP---PTSSP---PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           + P ++    S+P   P   P   PP    P  +     P ++              +  
Sbjct: 686 SVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSEL 745

Query: 115 PP-PPSSTPPPNSPPSPPSD-----PPANSPPPSNPPSNLPPPPPSSV 156
                 +T  P       S          S    +   NL      S+
Sbjct: 746 QAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSSGSI 793

Length = 944

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 41/220 (18%), Positives = 53/220 (24%), Gaps = 8/220 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           S   P    S   P + + P     P     PK  PPP   S P     P    +  PP 
Sbjct: 602 SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPK 661

Query: 65  SSSPPAS--------SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           S  PP               +   +    T+        S      P  P +   T  P 
Sbjct: 662 SPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPL 721

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
           PP        P  P  DP A  P      +          E P  +P             
Sbjct: 722 PPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEED 781

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
                  P   +  P S            P+ P      +
Sbjct: 782 IHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLD 821

Length = 943

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           PP  +   P  + P+ P  PPA +PP         P  P++  P   +P   PP    PP
Sbjct: 384 PPSAAWGAPTPAAPAAP--PPAAAPPVPPAA----PARPAAARP---APAPAPPAAAAPP 434

Query: 175 PSSSPPKNSPPAP 187
             S+ P  +  A 
Sbjct: 435 ARSADPAAAASAG 447

Length = 576

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 28/176 (15%), Positives = 40/176 (22%), Gaps = 6/176 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                   SS+P    + PP    P   +      P    +   P        P S+P  
Sbjct: 53  KMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSA 112

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSP--PASSPPTISPP--PPVSNPPTRSPPPPSS 120
                +           +  P   P              S    PPVS     S   P++
Sbjct: 113 RRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPAT 172

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
                +      D        +            S   P   PP   P+ P    S
Sbjct: 173 ALASAALFKD--DEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRS 226

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S       PP     P  PA++    +       P    P    +  P  +  +    
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAA---PAAGGPAAALAAVPDAAAAAAAPP 447

Query: 134 PPANSPPPSNPPSNLP 149
            PA +P P+   ++  
Sbjct: 448 APAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S   P  ++       +   +  P    ++    +   PP +      P P P A  
Sbjct: 89  DAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQ- 147

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
               ++P     P   PP +  PPT S P +  A 
Sbjct: 148 ---PATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179

Length = 226

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP-TSSPPPSPPASSPPTIS 102
           P+S+  T   PP+   +    + +   +     +  P   PP  S P P   A  P    
Sbjct: 114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP 173

Query: 103 PPPPVSNPPTRSPPPPSSTP 122
              P   P  R+ P  +  P
Sbjct: 174 AAKPPPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
           T   PP+   ++                 P   + TP P +   P     A  P P+   
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKT----TPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA 175

Query: 146 SNLPPPPPSSVEPPKRSPPS 165
              P P   +     R P S
Sbjct: 176 KPPPTPVARADPRETRVPMS 195

Length = 418

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 43/173 (24%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P       K++  P  VS P    P    P S P T     A++    S    S  P  +
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTY--PSQVTPQSQPATQGHQTATANQRLS----STEPVGT 221

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              +  ++  P   PPP     P+ SP  P ST   +   S   D   ++     PP+  
Sbjct: 222 QGTTTSSNPEPQTEPPPS-QRGPSGSPQHPPSTTSQDQ--STTGDGQEHTQRRKTPPATS 278

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
               P S   P  +        P P P+++    S P P + PP     P TQ
Sbjct: 279 NRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSP-PHSSPPGVQANPTTQ 330

Length = 408

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 39/191 (20%), Positives = 61/191 (31%), Gaps = 15/191 (7%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P  +       S P   S P  P    P +  +       T++   +S  P  +   +  
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
           ++  P   PPP     P+ SP  P ST   +   S   D   ++     PP+      P 
Sbjct: 228 SNPEPQTEPPPS-QRGPSGSPQHPPSTTSQDQ--STTGDGQEHTQRRKTPPATSNRRSPH 284

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           S   P  +        P P P+++    S P            P +  P   A+P     
Sbjct: 285 STATPPPTTKRQETGRPTPRPTATTQSGSSP------------PHSSPPGVQANPTTQNL 332

Query: 215 SNSSPNSPPPP 225
            +     PP P
Sbjct: 333 VDCKELDPPKP 343

Length = 408

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
            P    S+        A   P    PP    P     P P   S   +S     S     
Sbjct: 118 SPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ--SESLIA 175

Query: 114 SPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
            P P    P  +    +P SDP +     +  P +L  PP ++  P  +  P++    P 
Sbjct: 176 QPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISASQPA 235

Length = 430

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
            +    A   P +S   +P  +S P +      S+ P+RS   PS    P+S        
Sbjct: 110 FTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRS-ASPSRKFSPSSTIQQSPQL 168

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
             ++ P S   S   P   SS+ P   S      ++ P    SS  K
Sbjct: 169 TPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDK 215

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 30/206 (14%), Positives = 50/206 (24%), Gaps = 26/206 (12%)

Query: 30  PPVSNP---PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
            P++NP    ++    PPV+   + +  P+     P +       SP            T
Sbjct: 128 GPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDT 187

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-----STPPPNSPPSPPSDPPANSPPP 141
           S    +       ++       NPP +S    S     +        +  S     S   
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247

Query: 142 SNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP------------- 187
           S      L           +      P  +     S    +                   
Sbjct: 248 SGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307

Query: 188 ----IAVPPSNVPPPPTQTPPTPASP 209
                 VP S V    ++ P  P  P
Sbjct: 308 DEEMEIVPESPVEEEESEEPEPPPLP 333

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
           PP N PPPPP    PP   PPS PP  PPPPP  +  K S
Sbjct: 5   PPGNPPPPPP----PPGFEPPSQPP--PPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
           ++ PP +PP PP  PP    PPS PP   PPPP  +V+   R   S+
Sbjct: 2   ASLPPGNPPPPP--PPPGFEPPSQPP--PPPPPGVNVKKRSRKQLSI 44

Length = 2365

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LGEG +GSVYK  +   G+ VAIK + +      +E   E+ I+ +    ++V   G  
Sbjct: 10  KLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDL--QEIIKEISILKQCDSPYIVKYYGSY 67

Query: 433 ISDDRRLLIYDY 444
             +    ++ +Y
Sbjct: 68  FKNTDLWIVMEY 79

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 4  PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           S   P + S S     S+  + S PP       SS  P P  + P+ S     P+  P 
Sbjct: 1  SSSSNPTSRSQSHASSSSSSSSQSSPP-------SSTSPRPRRRKPSASSLLHTPSILPL 53

Query: 64 TSSSPPASSPPTSSPPPASNPPTSSP 89
             S P+    T  P   +  P  +P
Sbjct: 54 PKLSSPSPPSVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 51/222 (22%), Positives = 69/222 (31%), Gaps = 14/222 (6%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
             +P P +  P +   P P S  P+ S     V    T SP          TS+ P A +
Sbjct: 215 GFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSP-------REETSAEPLAPA 267

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
            P+S  P  +     +             S  P  S+      P PS+T P   PP+   
Sbjct: 268 SPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNK 327

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRS-----PPSVPPQNPPP-PPSSSPPKNSPPA 186
               +  P    P        S              PS   Q+PP   P  S   ++P  
Sbjct: 328 KAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSG 387

Query: 187 PIAVPPSNVPPPPTQTPPTPASPIAPR-PSNSSPNSPPPPST 227
               P S +PP   Q     AS   P  P +S    P     
Sbjct: 388 AAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQEL 429

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 50/225 (22%), Positives = 61/225 (27%), Gaps = 5/225 (2%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P  V+       P    N      P P   +P       +PP+   P+   P        
Sbjct: 53  PEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQ 112

Query: 77  SPPPASNP--PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
            P P   P  P  S P  PPA  P    P PP   P         S P        P   
Sbjct: 113 QPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVP---QQQQYQSPPQQPQYQQNPPPQ 169

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
             ++P  S       P  P S  P +  P S+  Q P      S     PP P       
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
               P    P+   P   +       S PPPS             
Sbjct: 230 PGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQ 274

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 23/119 (19%), Positives = 45/119 (37%)

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                   P  ++      +P + P      P +++ P  +     A  P+  P PP+  
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 203 PPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              PA      P  ++P++ P P+      P   P P+    P     P++P + ++P+
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.3 bits (103), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%)

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
           P S++ P  +  A  A   +    P  + P  PA       + ++P  P   +    +P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 234 PGIPVPSTENTPGNGTNPSS 253
                 +             
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 36/219 (16%), Positives = 55/219 (25%), Gaps = 35/219 (15%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPP----------------------ASNPPTS 87
                    A   P+S S    S  T++                         A +P   
Sbjct: 575 ANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEG 634

Query: 88  SPPPSPPA---SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
               S       +PP+ +PP  +S P +      +S      P    +     S P +  
Sbjct: 635 DGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELA--THQSVPEAAL 692

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
            S   P PP   +P  R     PP    P  +S+    +  A   +  S           
Sbjct: 693 ASGSAPAPPPVPDPYDR-----PPWEEAPEVASANDGPNNAAEGNLSESV---EDASNSE 744

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
             A                 P++          V  TE 
Sbjct: 745 LQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTEL 783

Length = 944

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 28/129 (21%), Positives = 37/129 (28%), Gaps = 3/129 (2%)

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP 191
             P   SP    P + LP P P               Q     P+ SP  N P       
Sbjct: 46  EFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFA--L 103

Query: 192 PSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNP 251
           P+    P  QT P    P    P   + N    P  +         +      P +G  P
Sbjct: 104 PAGPAGPTIQTEPGQLYP-VQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLP 162

Query: 252 SSPESSSSP 260
           S  +S+   
Sbjct: 163 SQQQSAQKN 171

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS 231
           P PPS++    +P AP A PP+  PP P   P  PA P A RP+ +           R +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP---PAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 232 PP 233
            P
Sbjct: 439 DP 440

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
           +P P +     P P   +  PP  +PP   P   P  P+++ P  +P  P A  P     
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPP--VPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 198 PPTQTPPTP 206
            P       
Sbjct: 439 DPAAAASAG 447

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           S P   S     +  P  + P   +P +  +   A +P P+  P       PS       
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS---QANV 217

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
              + P    P  P  + P  +  A ++ P +
Sbjct: 218 DTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 6/131 (4%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSS-SPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            PP     +   T+ P S  A N P S    P S  PT    P+S+P + S P +  + S
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPS 208

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
              +     V  P +      S+     +     S     S          P    SS+ 
Sbjct: 209 NLQV--TTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRS---TPTSGSSSIN 263

Query: 158 PPKRSPPSVPP 168
           P      +   
Sbjct: 264 PVSGLDEAEED 274

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 10/136 (7%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
           +S  P          ++ P+S    ++P    +        +P     P+ SP    +  
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTP---ISDRLRPRSVTPTRGRRPSSSPRSLSNPT 202

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
              SP     T        PP      S   +   S       S   P  RS  S     
Sbjct: 203 TLESPSNLQVTTD-----VPPPYSNGTSRSSTMSSSANLSIISSLATP--RSGESFRSTP 255

Query: 171 PPPPPSSSPPKNSPPA 186
                S +P      A
Sbjct: 256 TSGSSSINPVSGLDEA 271

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 45/280 (16%), Positives = 75/280 (26%), Gaps = 15/280 (5%)

Query: 12  NSSSPPPPVSNP--PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
            SSS  P  +         P   S  P  +    P S   T S   SP  + PP  S   
Sbjct: 174 ASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSPNN 233

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
             S    SP P +    ++   +  +S     S    V           S+     +  S
Sbjct: 234 LFSTSDLSPLPDTQSVENNIILNSSSSINELTSIYGSV-PSIRNLRGLNSALVSFLNVSS 292

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
                 A +    +P  +     PS+    +  P S P        ++         P  
Sbjct: 293 SSLAFSALNGKEVSPTGS-----PSTRSFARVLPKSSPNNLLTEILTTG-VNPPQSLPSL 346

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSS-PNSPPPPSTKRLSPPPGIPVPSTENT---- 244
           + P  +      +    +  + P  +      S         + P      ST N     
Sbjct: 347 LNPVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRNILGNI 406

Query: 245 -PGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFS 283
            P   T+ +    +S        ++      +    I  S
Sbjct: 407 SPNFKTSSNLTNLNSLLKEKLSNSSSVSATDILGPSIIVS 446

Length = 777

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 8/124 (6%)

Query: 102 SPPPPVSNPPTRSPPPPSSTP-PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
            PP   +  P            P    P P   P   + P     +   P  P++     
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSR--VARGDPVRPTAHHAAL 692

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           R      PQ P P          PP P     +   P  +    +P +P  P P  +   
Sbjct: 693 R-----APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747

Query: 221 SPPP 224
               
Sbjct: 748 DGAE 751

Length = 753

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/159 (15%), Positives = 33/159 (20%), Gaps = 2/159 (1%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           SP         +           T+           P   +       TS+      PP 
Sbjct: 20  SPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPR 79

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
                     S P     PP   P        +S+P   +  + P      + P    P 
Sbjct: 80  GPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPI 139

Query: 147 NLPPPP--PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                     S E     PP              P   S
Sbjct: 140 GESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFS 178

Length = 580

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 27/66 (40%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
                PP  +     +P PSPPAS     S+ PAS+    SP   S   T+   PS    
Sbjct: 81  TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

Query: 97  SPPTIS 102
           S  + +
Sbjct: 141 SSGSDA 146

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
              PP  +P S P+  P  SPP S P S +   P S+V          P +      +  
Sbjct: 83  KVAPPAATPTSAPT--PTPSPPAS-PASGMSAAPASAV------EEKSPSEESATATAPE 133

Query: 179 PPKNSPPAPIAVPPSNV 195
            P  S P+  +   S +
Sbjct: 134 SPSTSVPSSGSDAASTL 150

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            +S+ PTS S   +S  +SS   +S P ++SP P     S  ++   P +   P  S P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 118 PSSTPPPNSPPSPPS 132
           P S   P +  +   
Sbjct: 61  PPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
           SSS   +S   S    +S+  + S PPS  ++SP      P  S+       P     P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPS--STSPRPRRRKPSASSLLH---TPSILPLPK 55

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPP 150
            S PSPPS      P  +     L P
Sbjct: 56  LSSPSPPSVTLP--PAATTQTPQLNP 79

Length = 590

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 375 LGEGGFGSVYK-GYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG GGFG V         R  A+K +K    +  GQ +    +E EI+   +H  +V L 
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQ-QEHIFSEKEILEECNHPFIVKLY 59

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                D + + ++ +Y     L+  L   G    D  T     A       YLH 
Sbjct: 60  RT-FKDKKYIYMLMEYCLGGELWTILRDRGL--FDEYTARFYIACVVLAFEYLHN 111

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 35/142 (24%)

Query: 375 LGEGGFGSVYKGYLPDGRE-----------------VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+   + + ++                 VA+K L+    +  R +F  EV+I
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLH------GEGR--------- 459
           +SR+   +++ L+G C+ +D   +I +Y+ N  L  +   H        G          
Sbjct: 73  LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCL 132

Query: 460 PVLDWATRVKIAAGAARGLAYL 481
           P + +++ + +A   A G+ YL
Sbjct: 133 PAISYSSLLHVALQIASGMKYL 154

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 375 LGEGGFGSVYKGYLPDGREVA---IKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           +G G FG V  G    G   A   +K+L+      E+  F  EV+    ++H +++  +G
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGE-GRPVLDWATRV--KIAAGAARGLAYLHE 483
            CI     LL+ ++ P   L  +L    G         V  ++A   A GL +LH+
Sbjct: 63  QCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ 118

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 19/121 (15%)

Query: 373 NLLGEGGFGSVYKGYL--PDGREV--AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
            ++G+G FG VY G L   DG+++  A+K L +I   +   +F  E  I+    H +++S
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR---VKIAAG----AARGLAY 480
           L+G C+  +         P   L +  HG+ R  +   T    VK   G     A+G+ Y
Sbjct: 61  LLGICLPSEG-------SPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEY 113

Query: 481 L 481
           L
Sbjct: 114 L 114

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P+  A  P   +    S   TS P  A+    +  PP  P ++PP         +  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAA---AAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 25/90 (27%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +      PP   +   ++     P   P T +PP +P    P     P         
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P P       +PP   P   P       P 
Sbjct: 117 PKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 34/159 (21%), Positives = 47/159 (29%), Gaps = 6/159 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S  P  A ++   P        +         K             +S P  PP + 
Sbjct: 783 GAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAA 842

Query: 62  ---PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              PP  SS  + S P ++   A        P  P   + P  + PP  +     +  P 
Sbjct: 843 ARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPA 902

Query: 119 SSTPPPNSP---PSPPSDPPANSPPPSNPPSNLPPPPPS 154
               P       P PP  P         PP +L  P PS
Sbjct: 903 PRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 21/133 (15%), Positives = 37/133 (27%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
           P            +++   P   +    +   +   ++   S S        SS P    
Sbjct: 780 PQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPP 839

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
              + PPP+  + S  +                 P    P   P +      A + PP+ 
Sbjct: 840 GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAG 899

Query: 144 PPSNLPPPPPSSV 156
            P+  P P P   
Sbjct: 900 APAPRPRPAPRVK 912

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           +   +     P    + + P+ + PA   V  +   P P   P   AS  A  P      
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP------ 418

Query: 221 SPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
               P     +P    P  +    P       +P + ++P
Sbjct: 419 -AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
              PAP    P+   P P +  P P++     P  ++  + PP    R +  P    P  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTR----PKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 242 ENTPGNGTNPSSPESSSS 259
              P   T  S+P+ + +
Sbjct: 417 VAPPVPHTPESAPKLTRA 434

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 167 PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
           P        ++S P N  PAP   PP     P        A+  +P P+ +SP  P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 227 TKRLSPPPGIPVPSTENTPGNGTNP 251
               SP P  P  +    P      
Sbjct: 421 PTEPSPTP--PANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P+  P  + +++  P   +P   S     S P   S   P  + P  +  PP+    N
Sbjct: 384 TQPAAAPQPSAAAAASP---SPSQSSAAAQPSAPQ--SATQPAGTPPTVSVDPPAAVPVN 438

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           PP  S+ P +  P         P +      P    P
Sbjct: 439 PP--STAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
               P          +     + PPP + PP    PP +   P  + P+P   PPA + P
Sbjct: 378 ERGAPAPPSAAWGAPTPAAP-AAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 141 PSNPPSNLPPPPPSSVE 157
           P+   S  P    S+ +
Sbjct: 434 PA--RSADPAAAASAGD 448

Length = 576

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 32/201 (15%), Positives = 50/201 (24%), Gaps = 6/201 (2%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
           T+    A+  P   P P +    +    +  A+ P       PVSN      PP    P 
Sbjct: 384 TAEKETAAKKP--QPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPD 441

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                +  +   A S   ++     P    S  +       +   + P   P  + P N 
Sbjct: 442 EAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATP-ND 500

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
                       P  P         P    P       PPP                 E 
Sbjct: 501 EAVETETFAHEAPAEPF---YGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEA 557

Query: 244 TPGNGTNPSSPESSSSPSNNG 264
             G     ++P +     +  
Sbjct: 558 EAGGIGGNNTPSAPPPEFSTE 578

Length = 709

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL--PPPP 152
           A++P +     P S PP+     P S P   +PPS   + P  +P  + P S     P  
Sbjct: 30  ATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQS 89

Query: 153 PSSVEPPKRSPP 164
           P++ + P    P
Sbjct: 90  PTTKQVPTEINP 101

Length = 291

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPP 111
             S  + +    +S P SS          +   SS P   + PAS P +       S+  
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
                   S+       S    P   SP  +   ++L     ++      SP        
Sbjct: 62  FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAA---ASLNGSLATASTSGSSSPSRSRRTTS 118

Query: 172 PPPPSSSPPK 181
               S + P 
Sbjct: 119 SDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
           PP+PP    P    P   +         +  PT  P    PA  P   +P       P +
Sbjct: 173 PPNPP-REAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPP 140
            P  P+  P P +P   P         
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           S P +     +PP A+     +P PSPPAS    +S  P  +          ++   P S
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134

Query: 127 PPSPPSDPPANSPPPSN 143
           P    S P + S   S 
Sbjct: 135 P--STSVPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 55/254 (21%), Positives = 78/254 (30%), Gaps = 4/254 (1%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +P      +  P P   +P         + P    P   P  +  +    P+P     
Sbjct: 62  ADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPY 121

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               S P   P          PP    P      SPP          P  +S P  S   
Sbjct: 122 YPPPSQPQPPPAQQPQAQQPQPPP-QVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLY 180

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE---PPKRSPPSVPPQNPPPPPSSSP 179
           P  SP  P S PP    P S          P S +   PP+ SP         P      
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPS 240

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
            +  PP+          PPP++      +  AP+ S+ S ++  P        P  +P+ 
Sbjct: 241 GQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMS 300

Query: 240 STENTPGNGTNPSS 253
           S   + G   +P S
Sbjct: 301 SAPMSGGGSGSPQS 314

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 50/238 (21%), Positives = 62/238 (26%), Gaps = 3/238 (1%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           +S+    S          T  PP     +    + +P         P PA   P      
Sbjct: 29  LSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQ 88

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
              A          P     +    P     P   PPS P  PPA  P    P      P
Sbjct: 89  QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVP 148

Query: 152 PPSSVEPPKRSP---PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                + P + P    + PPQ    P  S       P      P N P P +     P S
Sbjct: 149 QQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYS 208

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG 266
              P      P  P P         P    PS +  P +        S   PS    G
Sbjct: 209 GAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHG 266

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P         P A+    + PP  +     +   + P+  P T++PP     P      P
Sbjct: 47  PGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEP 106

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
           P   P     P P       +PP   P    P P       P 
Sbjct: 107 PKPKPVEKPKPKPKPQQKVEAPPAPKPE---PKPVVEEKAAPT 146

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 43  PPVSKPPTTSPPPSPPASNPPTSSSPP----ASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           P V KP     P   PA+     + PP     +     +  P+ +P T +PP +P    P
Sbjct: 42  PLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP 101

Query: 99  PTISPPPP-VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
             + PP P     P   P P      P +P   P         P
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 18/123 (14%)

Query: 374 LLGEGGFGSVYKG-YLPDGRE----VAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LLG G FG+V+KG ++P+G      VAIK ++   G Q  +E    +  +  + H ++V 
Sbjct: 14  LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLH---GEGRP--VLDWATRVKIAAGAARGLAYLH 482
           L+G C     + L+    P  +L  H+        P  +L+W  ++      A+G+ YL 
Sbjct: 74  LLGICPGASLQ-LVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQI------AKGMYYLE 126

Query: 483 EDC 485
           E  
Sbjct: 127 EHR 129

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                S+    S   +S+ P SSP  A  P  S P  +  + S         + +  T  
Sbjct: 264 DPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGS---------LHSAQTSR 314

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP---PSSVEPPKRSPPSVPPQNP 171
            P  +     +S        P++    + PPS++   P     S        P       
Sbjct: 315 RPNTTFDKAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGK 374

Query: 172 PPPPSSSPPKNSPPAP 187
             P S S P  SPP P
Sbjct: 375 GEPASESTPSTSPPPP 390

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 63/250 (25%), Positives = 80/250 (32%), Gaps = 33/250 (13%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPP----------PPVSNPPKSSPPPPPVSKPPTT 51
           S   PG PA    + PPP       S P             + P    P       P   
Sbjct: 427 SRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAGA 486

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS--- 108
           +PPP P A+  P +        P   PP      T  P   PPA++PP     P +    
Sbjct: 487 APPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEPDD 546

Query: 109 -NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
                R     ++T  P   P+P  DP       S  P     P P   + P   P    
Sbjct: 547 DRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPMEGA 606

Query: 168 PQNPPPPPSSSP--------------PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA-P 212
            + P     +SP              P  SPP     P    PP P  +P  PA P   P
Sbjct: 607 GEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFP----PPDPALSPEPPALPAHRP 662

Query: 213 RPSNSSPNSP 222
           RP   +P+ P
Sbjct: 663 RPGALAPDGP 672

Length = 694

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           A +   +   PA+     +PPP PP+++    +P  P   PP  +PP P    P  +PP 
Sbjct: 24  AGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPP 83

Query: 130 PPSDPPANSPPPSNPPSNLPPPPP 153
           PP+DP A  PPP +P +  PP P 
Sbjct: 84  PPADPNAPPPPPVDPNAPPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 23/155 (14%), Positives = 32/155 (20%), Gaps = 2/155 (1%)

Query: 3    APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
               P    +NSS             P        KS       S            +   
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269

Query: 63   PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               ++P   S    SPPP S  P          SSP        +    + +        
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLE--GSLAALKKKKKS 1327

Query: 123  PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
               +     S         S     L  P     +
Sbjct: 1328 EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSD 1362

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 27/181 (14%), Positives = 38/181 (20%), Gaps = 18/181 (9%)

Query: 14   SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             S          +     V +  K      P +K   +S   S    +    + P  SS 
Sbjct: 1183 KSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG--SDQEDDEEQKTKPKKSSV 1240

Query: 74   PTSSPPPASNPPTS---SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
                    ++  +S       S   S        P   +    SPPPPS  P   S    
Sbjct: 1241 KRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300

Query: 131  PSDPPANSPPPS--------NPPSNLPPPPP-----SSVEPPKRSPPSVPPQNPPPPPSS 177
                P                               S     + S          P    
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360

Query: 178  S 178
            S
Sbjct: 1361 S 1361

Length = 1388

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 11/57 (19%), Positives = 17/57 (29%)

Query: 23 PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP 79
           P  +PP P + P    P           +P  + P +  P    P     P  +  
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 34/188 (18%), Positives = 47/188 (25%), Gaps = 9/188 (4%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S+  PA  PP             P     P       R+   P   P  +  P+     P
Sbjct: 91  SAGEPAPPPP---HARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP--PAPIAVPPS 193
           A    P   P   P          ++     PP+ P   P+S  P+         A  P 
Sbjct: 148 AYQQRPE--PGAWPRAADDY--GWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPE 203

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
                     P P      R     P  PP         P           P   + P  
Sbjct: 204 YDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGP 263

Query: 254 PESSSSPS 261
             +  +P+
Sbjct: 264 LAAQPAPA 271

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
                 +  PP+ SPP P   P   +P P    PP    P  P  + +S N+P       
Sbjct: 517 ASNTAKTPPPPQKSPPPP--APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 230 LSPPPGIPVPSTENTP 245
             PPP    P+   T 
Sbjct: 575 SPPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 17/76 (22%), Positives = 22/76 (28%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
           S       N   P + +P  N  P P  + PS        T P+P    A  P       
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 222 PPPPSTKRLSPPPGIP 237
             P  T   +     P
Sbjct: 422 TEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 5/145 (3%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           PPS    +  +     P ++  + S               P +   + S P   P  +  
Sbjct: 648 PPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPY 707

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
             PP   E P+ +  +  P N       +  ++   A  +     V    T  P   A  
Sbjct: 708 DRPP-WEEAPEVASANDGPNN---AAEGNLSESVEDASNS-ELQAVEQQATHQPQVQAEA 762

Query: 210 IAPRPSNSSPNSPPPPSTKRLSPPP 234
            +P  + +   +        L+   
Sbjct: 763 QSPASTTALTQTSSEVQDTELNLVL 787

Length = 944

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 10/74 (13%), Positives = 19/74 (25%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              PP+        P     P A     +    +   ++    +    V +    +  PP
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 119 SSTPPPNSPPSPPS 132
           +    P       S
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
            PP                  P+  A+    +++P A  P  +          ++ PP+P
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 94  PASSPPTISPP 104
            A+  P +   
Sbjct: 450 AAAPQPAVRLN 460

Length = 598

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 31/160 (19%), Positives = 41/160 (25%), Gaps = 1/160 (0%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           SS   ++   P S P  RS    +             D  +    P   P++LPPPP   
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRR 318

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
                       P       +  P + +         S        T P  +   A    
Sbjct: 319 PRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFL 378

Query: 216 NSS-PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
                 SPP   T  L   P   V S    P       S 
Sbjct: 379 EDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 17/93 (18%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           VSKP T +   +PP     T +S P    PT SPP +   P S    +P ++        
Sbjct: 74  VSKPKTGTGKVAPP---AATPTSAPT---PTPSPPAS---PASGMSAAPASAVEE----- 119

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
               +P   S    +   P  S PS  SD  + 
Sbjct: 120 ---KSPSEESATATAPESPSTSVPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 9/35 (25%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           PP NPP   PPPPP   EPP + PP      PPPP
Sbjct: 5   PPGNPP---PPPPPPGFEPPSQPPP------PPPP 30

Length = 2365

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRH 424
           F    +LG+GGFG V    +   G+  A K+L   +I   +GE     E +I+ +++ + 
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF 61

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
           +V+L     + D   L+   +    L FH++  G P  +    +  AA    GL  LH +
Sbjct: 62  VVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE 121

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 26/87 (29%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                P  A    P P V      + P P S      P P PV +P  +     P    P
Sbjct: 120 ETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTP 179

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSP 89
            T   PPA  PP    P  S       
Sbjct: 180 VTLELPPAPQPPPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P K  P  P +      S   +P  S   ++++  + SP T   P  S  P +    SPP
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTS--PPAGHLGSPP 608

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           A+    +S        P+ SPP      P  +P SP S     S   ++P S++
Sbjct: 609 ATPSKIVS--------PSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSI 654

Length = 670

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE--REFKA---EVEIISRIHHRHLVS 427
           LLG G FG VY  Y  D GRE+A+KQ+       E  +E  A   E++++  + H  +V 
Sbjct: 9   LLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQ 68

Query: 428 LVGYCISD--DRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
             G C+ D  +++L I+ +Y+P  ++   L   G  + +  TR +      +G++YLH +
Sbjct: 69  YYG-CLRDPEEKKLSIFVEYMPGGSIKDQLKAYG-ALTENVTR-RYTRQILQGVSYLHSN 125

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 20/70 (28%)

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
           PPS       PP     P A +   +   +   P            P +      PP P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 177 SSPPKNSPPA 186
           ++P       
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP---PTISPPPPVS 108
            P P      PP     P +    ++P  A+  P +  P +  A+ P      + PP  +
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 109 NPPTRSPPPPS 119
             P  +    S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           P    +              PK++ P P    PP  S P  P A+ PP    P  ++ P 
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPE---PPAASKPTPPAAAKPPE---PAPAAKPP 178

Query: 76  SSPPPASNPPTSSPPPSP 93
            +P   ++P  +  P S 
Sbjct: 179 PTPVARADPRETRVPMSR 196

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
            GP +  +++ P P +  P  + P     P  ++P  P  S  P+   P       PP S
Sbjct: 387 EGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRS 446

Query: 66  SSPPASSP--PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
             PP  +P  P +SP P +    +S   +PP    P+ +     S P T
Sbjct: 447 GIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           ++         SS+   +SPPS  S  P    P ++   + P   P     PK S PS P
Sbjct: 7   TSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPL----PKLSSPSPP 62

Query: 168 PQNPPPPPSSSPPKNSP 184
               PP  ++  P+ +P
Sbjct: 63  SVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
                      A + P    P    +  +   PPP    P     +P ++ P+  P PS 
Sbjct: 49  KAAEQMAAPEAAEAAPL---PAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSA 105

Query: 144 PPSNLPPPPPSSVEPP 159
            P+   P  PS    P
Sbjct: 106 APAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 35/167 (20%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           SNP    +  A +     P        SSPP    A+                 S     
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASK 818

Query: 120 STPPPNSP------PSPPSDPPANSPPP------SNPPSNLPPPPPSSVEPPKRSPPSVP 167
                ++P        P   P A + PP      S+          +  +  +R P    
Sbjct: 819 RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPE 878

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           P+  P     +PPK +  AP A  P+  P P  +    P  P  P P
Sbjct: 879 PRARPGAA--APPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +  PP++    P+     +PPP+  P   P PP +   P    P   P       P +  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAP---PVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 180 PKNSPPA 186
              +  A
Sbjct: 438 ADPAAAA 444

Length = 576

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSP---PPASNPPTSSPPPSPPASSPPTISPPPP 106
           T       P+S    SS+   SS    SP   P +    +++   +   +       P  
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357

Query: 107 VSNPPTRSPP---PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
           V+ P T + P   P +  P P S          N    +N P+   P  P+S  P 
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPV 413

Length = 421

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKR---SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
            P    +     P ++   P        + P   PP PP+ +       AP A  PS VP
Sbjct: 45  GPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQE---GEAPAAEQPSAVP 101

Query: 197 PPPTQTPPTPASPIAPRP 214
            P     P PA P+ P  
Sbjct: 102 APSAA--PAPAEPVEPSL 117

Length = 931

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            PP +  PPP     P  +P     PP   P  +P P P     PK  P  V      P 
Sbjct: 59  EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPK 118

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
               P +  P +P           P +   + A+  A +P  S  + P   S
Sbjct: 119 REVKPVEPRPASP------FENTAPARPTSSTATAAASKPVTSVSSGPRALS 164

Length = 246

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 371 DQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           ++ +LG+G +G VY    L     +AIK++     +  +    E+ + S + HR++V  +
Sbjct: 12  ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYL 71

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLD-WATRVKIAAGAARGLAYLHE 483
           G    +    +  + VP  +L   L  +  P+ D   T +        GL YLH+
Sbjct: 72  GSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD 126

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 59/248 (23%), Positives = 78/248 (31%), Gaps = 17/248 (6%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
           P  P   P     PP+P   NP  +    A            NP    PPP+      P 
Sbjct: 283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPN 342

Query: 101 IS--PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
                PP     P  S  PP+   PPN P    S+  ++   P NPP+  P  P      
Sbjct: 343 EENLFPPGDDEVPDESNVPPN---PPNVPGGSNSEFSSDVENPPNPPN--PDIPEQEPNI 397

Query: 159 PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
           P+ S   VP   P  P        + P            P    P       + +    +
Sbjct: 398 PEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVIPKPLDNERDQSNKNKQVN 457

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSS---------SPSNNGIGTAG 269
           P +    S  R + P G    +      N   P  PE S            SNNG   AG
Sbjct: 458 PGN-RHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPERSEHEQPEDKKKKSSNNGYKIAG 516

Query: 270 TVVIAVAV 277
            V+  +A+
Sbjct: 517 GVIAGLAL 524

Length = 576

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 29/180 (16%), Positives = 37/180 (20%), Gaps = 15/180 (8%)

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
           P+   P P    P         T  P  P            P ++      P        
Sbjct: 90  PSAGEPAP----PPPHAR---RTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTA 142

Query: 159 PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA----SPIAPRP 214
               P       P   P ++         +  PP      P    P          A RP
Sbjct: 143 RPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRP 202

Query: 215 SNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNG----TNPSSPESSSSPSNNGIGTAGT 270
                             P        E  PG G      P  PE   +P      +A  
Sbjct: 203 EYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Length = 617

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 1/97 (1%)

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
                P+    P   + P  +P    A   S  P   +      A   A +P+ + P   
Sbjct: 370 SGGRGPKQHIKP-VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
             P       PP     +                 SS
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

Length = 614

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P S       PP     P   +   +P A+    ++  PA++        A+     +P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 91  PSPPASSPPT 100
            +P  +    
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           P  P      PP       +P A  A   +     P    P  A    P  + ++   P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAA--AAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 224 PPSTKRLSPPPGIPVPS 240
           P +     P P + + S
Sbjct: 449 PAAA----PQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 20/71 (28%)

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
           P S       PP     P     +      A +P    P + L   P ++        P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 166 VPPQNPPPPPS 176
             PQ      S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           PP+       PP     P   +      +  + P    P    ++ P  +  A     P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 194 NVPPPP 199
             P P 
Sbjct: 451 AAPQPA 456

Length = 598

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                 PPAA  +S P P  +PP        + P  +     P  +  T    P  P+++
Sbjct: 80  GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATA-TAPESPSTS 138

Query: 62  PPTSSSPPASS 72
            P+S S  AS+
Sbjct: 139 VPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           S P + S   +  +S+  + SSPP+S+ P       S       P   P     + SPP 
Sbjct: 4   SNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPS 63

Query: 106 PVSNPPTRSPPP 117
               P   +  P
Sbjct: 64  VTLPPAATTQTP 75

Length = 590

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSN------LPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P P     P   P A    P+ PP               S++P   +PP+ P +  P P 
Sbjct: 45  PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV 104

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
               PK          P      P    P P   +  + 
Sbjct: 105 EPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 50  TTSPPPSPPAS-NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
            T  P  P  + N   S +    +  + SP  +     +    SP   SP T   P P+ 
Sbjct: 4   ETKEPEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPL- 62

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
                  PP ++   P S              P NP S  P PPP      KR
Sbjct: 63  -------PPNTTLDAPVSDSQGDESSSEQ--QPQNPNSTEPAPPPKKRRRRKR 106

Length = 808

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYK-GYLPDGREVAIKQLKIGG-GQGERE-FKAEVE 415
           YE L            +G+G FG+V K     DG+ +  K++  G   + E++   +EV 
Sbjct: 2   YEVL----------ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVN 51

Query: 416 IISRIHHRHLV 426
           I+  + H ++V
Sbjct: 52  ILRELKHPNIV 62

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRH 424
           F    +LG+GGFG V    +   G+  A K+L   +I   +GE     E +I+ +++ R 
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF 61

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
           +VSL     + D   L+   +    L FH++  G    +    V  AA    GL  LH++
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE 121

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 13/83 (15%), Positives = 17/83 (20%)

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           S S    +   P        P P    P   A+   P P    P +    S      P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 236 IPVPSTENTPGNGTNPSSPESSS 258
              P         +         
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKP-PTTSPPPSPPAS 60
           + P  G   A  +      S  P    PP     P+ +P  PP  KP     P P P   
Sbjct: 65  TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQK 124

Query: 61  NPPTSSSPPASSPPTSSPPP 80
                +  P   P       
Sbjct: 125 VEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 28/106 (26%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 84  PPTSSPPPSPPASSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
           P     P   PA++    + PP              PS  P   +PP+ P +P    P P
Sbjct: 47  PGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE---PAP 103

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
             PP     P P     PK  P       P P P   P      AP
Sbjct: 104 VEPP----KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 41.5 bits (97), Expect = 9e-04
 Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 21/126 (16%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVS---KPPTTSPPPSPPA------- 59
            ++        S+    S P     P  S P     S       TS  P+          
Sbjct: 268 TSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSG 327

Query: 60  --------SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
                   S+    ++PP+S   +      S    S   P    S       P   S P 
Sbjct: 328 TKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGE---PASESTPS 384

Query: 112 TRSPPP 117
           T  PPP
Sbjct: 385 TSPPPP 390

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
            + P+    +SS    +S    S    S  P+SS       +S     P   +S+   R 
Sbjct: 224 DNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSS---KAKKNSRGIPKPRDALSSLVVRK 280

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPS 142
              P ST    S   P S+ P  +   S
Sbjct: 281 KAAPESTSQSPSSAEPTSESPQTAGNSS 308

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKI--GGGQGEREFKA-------EVEIISRIHHR 423
           L+G G FGSVY G     G  +A+KQ+++       +   ++       E+ ++  + H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 424 HLVSLVGYCISDDRRLLIYDYVP 446
           ++V  +G  +  D   +  +YVP
Sbjct: 67  NIVQYLGSSLDADHLNIFLEYVP 89

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 41.3 bits (96), Expect = 0.001
 Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 16/240 (6%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS- 67
               ++SPP   ++ P  + P      P ++   P V+  P+          +   SS  
Sbjct: 535 VTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594

Query: 68  ------PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 P +S     S   ++ P  +S  P+   +        P  ++  T SP P   T
Sbjct: 595 SQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
               S P   S      P   +    +P P  +S   P     +VP        ++S  K
Sbjct: 655 TSQVSGPGNSSTSR--YPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTK 712

Query: 182 NSPPAPIAVPPS-------NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            +  + +    S           P   T   P S  +      +  SPP  + +   P P
Sbjct: 713 ETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVP 772

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
           K+          PP  S+     S P+       N+      TP    +P   + S S  
Sbjct: 447 KKLANKTSTVMEPPYGSTESSVPSTPSTRR-NDRNITSN---TPSLKRTPNLTKSSLSQE 502

Query: 220 NSPPPPSTK------------RLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
            S    ST              L   P     S  N   +G N ++    SSP
Sbjct: 503 ASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSP 555

Length = 619

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 40/165 (24%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNP---PTRSPPPPSSTPPPNSPPSPPSDPP 135
           P  +NP +       P  +     P  P+  P   P + P  P +       P  P  P 
Sbjct: 716 PAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQ 775

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV 195
                P  P      P P   +P +   P    Q P  P +  P    P  P+A  P   
Sbjct: 776 PQYQQPQQPV----APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 831

Query: 196 PPPPTQTPPTPASPIAP---RPSNSSP---NSPPPPSTKRLSPPP 234
            P     P    + + P   R  +S P    + P PS   L+PPP
Sbjct: 832 QPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPP 876

Length = 1355

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            P +      P  P++ PP  +PP P A P       P   P  PA+   P  S + P +
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS-ADPAA 442

Query: 222 PP 223
             
Sbjct: 443 AA 444

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
             S P  +        T +P      +   + +P          +  P  +  P  +   
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAV--------ATAPAPAVDPQQNAVV 210

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
            PS    ++     P +    P  ++  P  ++  S P  +P
Sbjct: 211 APSQANVDTAATPAPAAP-ATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 6/125 (4%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           + N   S  PP    K    +  PS   +     S        T    P      SS P 
Sbjct: 141 LRNAWSSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT----PTRGRRPSSSPR 196

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           S   S+P T+  P  +       PP  + T   ++  S  +    +S        +    
Sbjct: 197 SL--SNPTTLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRST 254

Query: 152 PPSSV 156
           P S  
Sbjct: 255 PTSGS 259

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 7/121 (5%)

Query: 77  SPPPASNPPTSSPPPSPPASSPP-TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S              +   SS     +P      P + +   P+    P+S P   S+P 
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT---PTRGRRPSSSPRSLSNPT 202

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV 195
                PSN       PPP S     RS       N     S + P  S  +  + P S  
Sbjct: 203 TLE-SPSNLQVTTDVPPPYSNGTS-RSSTMSSSANLSIISSLATP-RSGESFRSTPTSGS 259

Query: 196 P 196
            
Sbjct: 260 S 260

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 40.7 bits (94), Expect = 0.001
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSP 127
           A++        A      S   S  A++P   +  P    + P   +  P  +   P   
Sbjct: 194 AAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKA 253

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN--SPP 185
            +PP+   A     + PP+    PP  +  PP ++          P  +++ P    + P
Sbjct: 254 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAP 313

Query: 186 APIAVPPSNVPPPPTQTPPTPASPIAP 212
           A  A PP+    PP +    PA   AP
Sbjct: 314 AKAAAPPAKAAAPPAKAATPPAKAAAP 340

Length = 357

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 6/70 (8%), Positives = 15/70 (21%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           PP              +P      +       +       +  +  P       +   P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 182 NSPPAPIAVP 191
            +P   + + 
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 10/67 (14%), Positives = 17/67 (25%)

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
             P      P         P+    P  ++  P    P +     P    +++ P     
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 186 APIAVPP 192
           AP     
Sbjct: 452 APQPAVR 458

Length = 598

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 31/148 (20%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN--------------- 83
           S P    +             + P   S+PP S  PT + PP +                
Sbjct: 93  SSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNISDA 152

Query: 84  ----------------PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
                             TS+ P +P   +P   +  P  +      P  P++  P  + 
Sbjct: 153 LSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH 212

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSS 155
               +     +               SS
Sbjct: 213 HKTATVAVPPATSGKPKSGAASARALSS 240

Length = 327

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 31/155 (20%), Positives = 45/155 (29%), Gaps = 9/155 (5%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP-SNPPSNLPPPPPSS----VEPPKRS 162
            N  + S    +S     S     + P   S PP S  P+   PP   +    +E P   
Sbjct: 90  GNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNI 149

Query: 163 PPSVPPQ----NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
             ++  Q    N     +       P AP  V PS     P      P  P  P     +
Sbjct: 150 SDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPA 209

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
            N     +        G P     +     + P+S
Sbjct: 210 VNHHKTATVAVPPATSGKPKSGAASARALSSAPAS 244

Length = 327

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 32/157 (20%), Positives = 45/157 (28%), Gaps = 5/157 (3%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
             +    SS P     +    +      A      +    S      P PAS PP   P 
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPP--PPV 316

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPP--PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
             P    P      P  +       P  P +ST    S  +   D  +  P  S   ++ 
Sbjct: 317 RRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASS 376

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
                    PP     S+    P P  +S+P   S P
Sbjct: 377 FLEDDDFGSPPLDLTTSL-RHMPSPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
            P+ S    P +    T  +P    P  ++P     P +++P    P+++P   SP  P 
Sbjct: 380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP---SPRVPW 436

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            + P   P PP S  PP   P  P   P    P S   ++  PP            PS P
Sbjct: 437 DDAP---PAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 49  PTTSPPPSPPASNPPTSSSPP--ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
           P  S  PS   ++ P+ S+    AS    + P P +  P  + P +    S    + P P
Sbjct: 367 PVESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAP 426

Query: 107 VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
                  S  P    P  ++PP+PP       P P  P ++  P  P SV     +PP++
Sbjct: 427 -------SAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTL 479

Query: 167 PPQNPPPPPSSSPPK 181
              +     + S P+
Sbjct: 480 GDPSDTAEHTPSGPR 494

Length = 624

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 5/160 (3%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           A      +P  +++  TS                    S   T   PP       + P S
Sbjct: 31  AERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDS 90

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
            P+       P   PP          +     SP  +   N P   +     NS      
Sbjct: 91  LPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSS----- 145

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
               +     ++ PP+ +  +               + KR
Sbjct: 146 SEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKR 185

Length = 580

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
           ++  P  +   + +  P  +  P  +  P  V+    T+   S  A +         + P
Sbjct: 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLP 361

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
            T + P A        P S   +   +       +N PT S P   + P  N P SP S
Sbjct: 362 GTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLP---AAPASNIPVSPTS 417

Length = 421

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 6/117 (5%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
             P  +   +++  PS  A   P       ++   +          +        S    
Sbjct: 304 VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAT---TTQASAVALSSAGVLPSDVTL 360

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP---PSNPPSNLPPPPPS 154
                  +  P    P P ST       +      AN P    P+ P SN+P  P S
Sbjct: 361 PGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417

Length = 421

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           PP  +P P  P +   +S        P  +  P    P   P    PA  P       PV
Sbjct: 176 PPREAPAPGLPKTFT-SSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPV 234

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
                 +P  P+  PP        S    N
Sbjct: 235 QPAQQPTPQNPAQQPPQTEQGHKRSREQGN 264

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           PP  +PP   PA   P + +         +P P   P   +P   P   +P       P 
Sbjct: 173 PP--NPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNP----AQQPQ 226

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
             P  +   P     P N    PP     +  
Sbjct: 227 QQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPP------TSSPPPASNPPTSSPPPSPPASS 97
             SK P   P   P  + P     P    P       +++       P+S+ P   P  S
Sbjct: 29  SNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPS 88

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
                   P   P  +    P +  P N     P++
Sbjct: 89  KNKEEIEKPKDEPK-KPDKKPQADQPNNVHADQPNN 123

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 17/195 (8%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             SPPAS   T  +      P  S    S   ++SP      SS    SP    SN P  
Sbjct: 117 KKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSNKP-A 175

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS--------------SVEPP 159
           SP     +P  +S   P +     S   S+P +                       V+  
Sbjct: 176 SPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKKDITTDEKYLETFLAEVDEE 235

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
           +    S   +N  PP + +   +S  +P     S       ++    +  ++P P  S  
Sbjct: 236 QHMITSSAGKNATPPETINSFGSS--SPSFWNYSRNASDAARSLKKRSYQLSPSPVPSKQ 293

Query: 220 NSPPPPSTKRLSPPP 234
            +   P      PP 
Sbjct: 294 KASTSPKKGEGEPPN 308

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           S   ++   S +  +SS  + S PP+S          P ASS        P+    + SP
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSS-TSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 116 PPPSSTPPPNSPPS 129
           P  +  P   +   
Sbjct: 62  PSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/78 (26%), Positives = 29/78 (37%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           SS  P   S+   +S   S   S+PP+S+SP       S+      P     P     S 
Sbjct: 2   SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 98  PPTISPPPPVSNPPTRSP 115
           P    PP   +  P  +P
Sbjct: 62  PSVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
               P +  P  S       S   TS   PA++    +PPP        PP      S  
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTS--QPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 36 PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
              P P P S     +PPP    + P T ++ PA++ P +   P  + P     P P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAE-KPKKDKPRRERKPKP 69

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 27 SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP-PASN 83
            P P    P ++P PPP +K    +   + PA+  P +  P    P     P PAS 
Sbjct: 15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            P  +PP P++ P P  P    +     + P +  P    P      + P+R     P
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKK----DKPRRERKPKP 69

Length = 475

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 20/93 (21%), Positives = 27/93 (29%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
             P  +  P+  P    V  P    PP       P  +           + P    P T 
Sbjct: 123 ADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTL 182

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             PP+P    P    P   V +  +R     SS
Sbjct: 183 ELPPAPQPPPPVVPQPSTMVVHRRSRIKRTRSS 215

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory factor

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
               P P  S         + S P+      S+P T +PPP+  + SPP  +   P++  
Sbjct: 296 NGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPA-AFERPLALS 354

Query: 111 PTRSPPPPSSTPPPNS 126
           P R            S
Sbjct: 355 PKRKREGDKKQKKKKS 370

Replicative DNA polymerases are capable of polymerising tens of thousands of nucleotides without dissociating from their DNA templates. The high processivity of these polymerases is dependent upon accessory proteins that bind to the catalytic subunit of the polymerase or to the substrate. The Epstein-Barr virus (EBV) BMRF1 protein is an essential component of the viral DNA polymerase and is absolutely required for lytic virus replication. BMRF1 is also a transactivator. This family is predicted to have a UL42 like structure. Length = 381

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGEREFK---AEVEIISRIHH 422
           F D   +G G FG+VY  +  D R    VAIK++   G Q   +++    EV+ + RI H
Sbjct: 27  FTDLREIGHGSFGAVY--FARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKH 84

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAA---GAARGLA 479
            + +   G  + +    L+ +Y   +     L    +P+ +    V+IAA   GA +GLA
Sbjct: 85  PNSIEYKGCYLREHTAWLVMEYCLGSASDL-LEVHKKPLQE----VEIAAITHGALQGLA 139

Query: 480 YLH 482
           YLH
Sbjct: 140 YLH 142

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRH 424
           F    +LG+GGFG V    +   G+  A K+L   +I   +GE     E +I+ +++ R 
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 61

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
           +VSL     + D   L+   +    L FH++  G P  D    V  AA    GL  LH +
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE 121

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPP---------------SSSPPKNSPPAPIAVPPSNVPPP 198
           S++  P+    SVP Q  PP P               S+S  + S P P + PP  VP P
Sbjct: 190 STMSRPQEVKQSVPAQQAPPNPQQPMPSASSESATSKSASTSRESSPQPQSPPPRRVPAP 249

Query: 199 PTQTPPTPASPIAPR 213
              +    A  I  +
Sbjct: 250 TVDSTAKEAEQITYQ 264

LIN-8 is a nuclear protein, present at the sites of transcriptional repressor complexes, which interacts with LIN-35 Rb.Lin35 Rb is a product of the class B synMuv gene lin-35 which silences genes required for vulval specification through chromatin modification and remodelling. The biological role of the interaction has not yet been determined however predictions have been made. The interaction shows that class A synMuv genes control vulval induction through the transcriptional regulation of gene expression. LIN-8 normally functions as part of a protein complex however when the complex is absent, other family members can partially replace LIN-8 activity. Length = 316

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 34/126 (26%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKA--------EVEIISRI-HHRH 424
           LG+G FGSVY       G  VAIK++K       ++F +        EV+ + ++  H +
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMK-------KKFYSWEECMNLREVKSLRKLNEHPN 59

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR-------- 476
           +V L      +D    +++Y+  N        +G+P          +    R        
Sbjct: 60  IVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKP---------FSESVIRSIIYQILQ 110

Query: 477 GLAYLH 482
           GLA++H
Sbjct: 111 GLAHIH 116

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGRE-VAIKQLKIGGGQGEREFK---AEVEIISRIHHRH 424
           F   + +G G FG+VY        E VA+K++   G Q   +++    EV+ + ++ H +
Sbjct: 23  FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPN 82

Query: 425 LVSLVGYCISDDRRLLIYDYV---PNNTLYFHLHGEGRPVLDWATRVKIAA---GAARGL 478
            +   G  + +    L+ +Y     ++ L  H     +P+ +    V+IAA   GA +GL
Sbjct: 83  TIEYKGCYLKEHTAWLVMEYCLGSASDLLEVH----KKPLQE----VEIAAITHGALQGL 134

Query: 479 AYLHEDCK 486
           AYLH    
Sbjct: 135 AYLHSHNM 142

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGERE-----FKAEVEIISRIHHRHLVS 427
           LLG+G FG VY  Y  D GRE+A KQ++      E        + E++++  + H  +V 
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQ 68

Query: 428 LVGYCISD--DRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
             G C+ D  ++ L I+ +Y+P  ++   L   G   L  +   K       G++YLH +
Sbjct: 69  YYG-CLRDRAEKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSN 125

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPP--PVSNPPKSSPPPPPVSKPPT--------TSPPP 55
           P PP + ++     + N P   P    P   P ++      V+             +P  
Sbjct: 538 PKPPDSFANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRT 597

Query: 56  SPPASNPPTSSSPPASS--PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
                    +  P A +   P      +++     PP   P   P T++ P P  +    
Sbjct: 598 VSRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEV 657

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
               P  +P   +P   P     +SP    P ++L P   S+   P  SP
Sbjct: 658 FMGYPFQSPHLGAPSGSPPGKDRDSPDLPRPTTSLHPKLLSAHHHPGSSP 707

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 15/118 (12%)

Query: 374 LLGEGGFGSVYKGYL-PDGREVAIKQL-KIGGGQGEREFKA-----EVEIISRI-HHRHL 425
           ++GEG F +V         +E AIK L K    Q  +E K      E E+++R+  H  +
Sbjct: 8   IIGEGSFSTVVLAKEKETNKEYAIKILDKR---QLIKEKKVKYVKIEKEVLTRLNGHPGI 64

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           + L  Y   D+  L  + +Y PN  L  ++   G   LD       AA     L YLH
Sbjct: 65  IKLY-YTFQDEENLYFVLEYAPNGELLQYIRKYGS--LDEKCTRFYAAEILLALEYLH 119

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGEREFK---AEVEIISRIHH 422
           F+D   +G G FG+VY  +  D R    VAIK++   G Q   +++    EV  + ++ H
Sbjct: 17  FSDLREIGHGSFGAVY--FARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 74

Query: 423 RHLVSLVGYCISDDRRLLIYDY-VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            + +   G  + +    L+ +Y + + +    +H +    ++ A    +  GA +GLAYL
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA---VTHGALQGLAYL 131

Query: 482 H 482
           H
Sbjct: 132 H 132

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 29/106 (27%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
               P A  PP   P      PP  S   PS++  P +     S  P    P    PS  
Sbjct: 179 GGNIPGAIQPP--PPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P   P+   PP     + P   P PPP    P     A     P+N
Sbjct: 237 PASIPAPPIPPVIQYVAPP---PVPPPQPIIPIQHIRAVTGETPAN 279

Length = 582

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKI----GGGQGEREFKAEVEIISRI 420
              F  +  +G+G F  VYK   L DGR VA+K+++I         +   K E++++ ++
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLK-EIDLLKQL 59

Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYF---HLHGEGRPVLD---WATRVKIAAGA 474
            H +++  +   I ++   ++ +      L     H   + R + +   W   V++    
Sbjct: 60  DHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL---- 115

Query: 475 ARGLAYLHE 483
              L ++H 
Sbjct: 116 CSALEHMHS 124

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQ--LKIGGGQGEREFKAEVEIISRIHHRHLVSL--- 428
           +GEG  G V+K      G  VA+K+  L+   G    +   E++ +    H ++V L   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 429 --VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
              G         L+ +Y+P + L   L  E RP+ +   +        +G+AY+H 
Sbjct: 68  FPHGSGFV-----LVMEYMP-SDLSEVLRDEERPLPEAQVK-SYMRMLLKGVAYMHA 117

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P       +PPA +P  ++          RS     +     +    P   P    PP+ 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPA- 404

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                 P P  S E P    P+  P    
Sbjct: 405 ------PEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P       +PP P  +              +  ++ +  A      +P P  +P    PP
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAA--TAAGAPLPDFDPRPRGPP 403

Query: 91  PSPPASSPPTISPPPPVSNP 110
              PA S        P + P
Sbjct: 404 APEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 40/179 (22%), Positives = 60/179 (33%), Gaps = 7/179 (3%)

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPS--PPSDPPANSPPPSNPPS---NLPPPPPSS 155
           + P    +    +  P    TP   SPP    P  P A  P P +P +   +L PP    
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPI 387

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
             PP  SP S    +    P+      SP +   VP         +    P SP A R  
Sbjct: 388 PTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKT-RPLSPYA-RYE 445

Query: 216 NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIA 274
           +  P + P P+      P      S    P      ++ ++++ P  N    +   V  
Sbjct: 446 DLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYD 504

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 163 PPSVPP-------QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           P SV P          P   ++     +  A  A  P+  P       P PA P A    
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-PPAAAAP 80

Query: 216 NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
            + P      +       P     +         +  +P
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           +P+  P     +  P          P  P +   + +  P P S P     PP   +   
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS--A 440

Query: 63  PTSSSPPASSPPTSSPPPAS 82
           P   SP AS+P   +     
Sbjct: 441 PLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 27/226 (11%), Positives = 51/226 (22%), Gaps = 1/226 (0%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S     P     +  PPP S P +        +    S    P  KP             
Sbjct: 522 SIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFA 581

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              +     +    +    +  P  S+                     P +       + 
Sbjct: 582 FANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNA 641

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
              +    P       SP      +       ++  P K++ P +   N       +   
Sbjct: 642 GASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESA 701

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
           ++          N    P   P  P  P++    ++S         
Sbjct: 702 STTDVFQNFAGLN-KKTPVGGPFQPKPPLSRALDSASSPGGSGGKP 746

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
                SP      PP     P       +             +  P+   +  P +++  
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAP----AAGGPAAALAAVPDAAAAA 443

Query: 70  ASSPPTSSPPPASNPPTS 87
           A+ P  ++ P  +    S
Sbjct: 444 AAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 37/181 (20%), Positives = 48/181 (26%), Gaps = 4/181 (2%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P P     N  S       P T S    +     SS            S       ++  
Sbjct: 225 PPPNLSPNNLFSTSDLSPLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSAL 284

Query: 64  TSSSPPASSPPT-SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
            S    +SS    S+       PT SP     A   P  SP   ++   T    PP S P
Sbjct: 285 VSFLNVSSSSLAFSALNGKEVSPTGSPSTRSFARVLPKSSPNNLLTEILTTGVNPPQSLP 344

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                 +P     +     +N    L P                   N P P SS   +N
Sbjct: 345 SLL---NPVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRN 401

Query: 183 S 183
            
Sbjct: 402 I 402

Length = 777

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
           P ++ P +  A+     +P  P +  PT   PP +S P P +   PP   PA  PPP+  
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPT-PEPPAASKPTPPAAAKPPEPAPAAKPPPTPV 182

Query: 145 PSNLPP 150
               P 
Sbjct: 183 ARADPR 188

Length = 418

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 8/155 (5%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S+     P   S       +     +          S P P P S PP   P   P   +
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPP--PPVRRPRVKH 323

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           P      P  +    +  PA    ++S   S  A +  + S  P  S     S       
Sbjct: 324 PEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDF 383

Query: 122 PPPNSPPSP-----PSDPPANSP-PPSNPPSNLPP 150
             P    +      PS    ++P PPS P + L  
Sbjct: 384 GSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP-PSDPPANSPP 140
           ++ P+ S    P +    TI  P P +  P  + P    TP   +P +P PS  P+    
Sbjct: 378 ASAPSGSAAEGPASGGAATI--PTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPS---- 431

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P  P  + PP PP S  PP R  P +P  +P P    S    S   P    PS+      
Sbjct: 432 PRVPWDDAPPAPPRSGIPP-RPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTP 490

Query: 201 QTPPT 205
             P T
Sbjct: 491 SGPRT 495

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
            PS   PA  + S  P    P   +PP     PP+S  PP P  + P  SP P  P S  
Sbjct: 415 TPSSAAPATPAPSAAPSPRVPWDDAPP----APPRSGIPPRPAPRMPEASPVPGAPDSVA 470

Query: 63  PTSSSPPASSPPTSSPPPASNPPTS 87
             S +PP    P+ +     + P +
Sbjct: 471 SASDAPPTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPIAVPPSNVPPPP-TQTP 203
           +N   P  + VE P+ +PPS   + P   P+ ++PP     AP   P +  P     +TP
Sbjct: 28  ANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETP 87

Query: 204 PTPASPIAPRPSN 216
            +P +   P   N
Sbjct: 88  QSPTTKQVPTEIN 100

Length = 291

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
              VS+   S     P S             S         A + P SS P  +   +SS
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              S    S    S      +    SP   S +   +   S  +   + S  PS      
Sbjct: 62  FGLSKQRPS----SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTT 117

Query: 149 PPPPPSSVEPP 159
                S   P 
Sbjct: 118 SSDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
           ++   P S   +SS   P  +  P+ +  PS   +   T++   A +  ++   P+    
Sbjct: 301 VAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD--- 357

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP-SPPSDPPANSPPPS 142
            + P      ++ P    P P+S   T+     + T   N P  S P+ P +N P   
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415

Length = 421

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 19/73 (26%), Positives = 27/73 (36%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP+PG P   +SS      + P  +  P V NP +      P  +P           +  
Sbjct: 180 APAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239

Query: 63  PTSSSPPASSPPT 75
           PT  +P    P T
Sbjct: 240 PTPQNPAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP------PPPPVSKPPTTSPPPSP 57
           P+ G     S +  PP  NPP  +P P +     SS        P P  +P   +P   P
Sbjct: 159 PAGGTYILASGTYIPP--NPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQP 216

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
              NP      P   P      PA  P   +P   PP +  
Sbjct: 217 TVQNPA---QQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 115 PPPPSSTPPPNSPPSPPSD---PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
           P PP   P P  P +  S       ++P P+  P+   P    +V+ P + P   P Q P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 172 PPPPSSSPPKNSPPAP 187
             P     P+N    P
Sbjct: 234 VQPAQQPTPQNPAQQP 249

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 28/132 (21%), Positives = 37/132 (28%), Gaps = 14/132 (10%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSP------PASSPPTSSPPPASN--PPTSSPPPSPPA 95
           P    P T  P S  +S              P   P  + P   ++  P   S  P    
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 96  SSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
            S   I+ P P   +   +R+   P S P        P     + PP     S  PP P 
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPI--AAS--PPGPQ 224

Query: 154 SSVEPPKRSPPS 165
                    P  
Sbjct: 225 EGPTISASQPAQ 236

Length = 430

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 30 PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
          PP + PP   PPPPP  +PP+  PPP PP  N    S
Sbjct: 5  PPGNPPP---PPPPPGFEPPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
           P +     + PP  +     +  +     P+  P    PP+    P P+ VEPPK  P  
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAA---PSLDPATVAPPNTPVEPEPAPVEPPKPKPVE 113

Query: 166 VPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
            P   P P      P    P P        P    +  PT
Sbjct: 114 KPKPKPKPQQKVEAPPAPKPEP-------KPVVEEKAAPT 146

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 26/107 (24%), Positives = 31/107 (28%), Gaps = 8/107 (7%)

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           P         P A      + PP   A +        P  +P T +PP     P P    
Sbjct: 47  PGDRDEPDMMPAA-TQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP---- 101

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
             P +PP   P P   P   P P      PP   P   P       P
Sbjct: 102 -APVEPP--KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 28/76 (36%), Positives = 35/76 (46%)

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
            I+ P   +  P   PPPPS+     +P +PP  PP  +PP   P      PPP   +P 
Sbjct: 30  AIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPN 89

Query: 160 KRSPPSVPPQNPPPPP 175
              PP V P  PPPP 
Sbjct: 90  APPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 24/82 (29%), Positives = 31/82 (37%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
              +       PP S P   P +SS  P++S    +  P  +     P PSP   S P  
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 102 SPPPPVSNPPTRSPPPPSSTPP 123
           S P P   P  +   PP   PP
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 34/121 (28%), Positives = 41/121 (33%), Gaps = 21/121 (17%)

Query: 53  PPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
               P A  PP              P      P  S   +P ASS P    P    NP  
Sbjct: 179 GGNIPGAIQPP-------------PPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFL 225

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK--RSPPSVPPQN 170
             P P   + PP S P+PP       PP     +  P PPP  + P +  R+     P N
Sbjct: 226 PGPSPAQPSAPPASIPAPP------IPPVIQYVAPPPVPPPQPIIPIQHIRAVTGETPAN 279

Query: 171 P 171
           P
Sbjct: 280 P 280

Length = 582

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 80  PASNPPTSSPPPSPPASSPPTISP--PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
           P+      +PP   PA     ++       S     +    ++  P       P  PPA 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKR 161
            P  S     L  P  +      R
Sbjct: 406 EPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 19  PVSNPPTISPPPPVSNPPKSSPPP--PPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P      ++PP P               V    +     +  A  P     P    PP  
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 77  SPPPASNPPTSSPPPSPPASSP 98
            P  ++  P    P + PA   
Sbjct: 406 EPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 18/121 (14%)

Query: 374 LLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVS 427
           +LG G FG+VYKG ++PDG      VAIK L+     +  +E   E  +++ +   ++  
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGE-----GRPVLDWATRVKIAAGAARGLAYLH 482
           L+G C++   + L+   +P   L  ++         + +L+W  ++      A+G++YL 
Sbjct: 74  LLGICLTSTVQ-LVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQI------AKGMSYLE 126

Query: 483 E 483
           E
Sbjct: 127 E 127

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVLDWAT---RVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PV    +    +++A   A G+A
Sbjct: 74  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMA 133

Query: 480 YLHED 484
           YL+ +
Sbjct: 134 YLNAN 138

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 48/230 (20%), Positives = 70/230 (30%), Gaps = 2/230 (0%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           PA +S     P  +   +SP        K      P         P   P S+  +SSS 
Sbjct: 78  PALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSISSSSS 137

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           PA  P    P PA++        S      P++SPP   ++           +     P 
Sbjct: 138 PAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLPA 197

Query: 129 SPPSDPPANSPPPSNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
                  +     S+P P +      +  +    S PS+      PPP S    +    P
Sbjct: 198 PKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDST-P 256

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
           + +   N P  P   P     P     S+SS     P  T         P
Sbjct: 257 LDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATP 306

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 7/202 (3%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
            A S +P    +  P    P   + P  +       +         S         +   
Sbjct: 57  TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP-----VSNPPTRSPPPPSSTPPP 124
             S P  +P  A     S P P+  A +        P     +S  P +      +T P 
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV 176

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
              P       A +P P+   +       +  +  +         +  P     PP   P
Sbjct: 177 PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQ--ILPPAALP 234

Query: 185 PAPIAVPPSNVPPPPTQTPPTP 206
           P  +A              P P
Sbjct: 235 PIVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 374 LLGEGGFGSVYKGYLPDGREV-AIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           ++G G FG V+     D  +V A+K L+    I   Q     +AE +I++      +V L
Sbjct: 8   VIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQ-IAHVRAERDILADADSPWIVKL 66

Query: 429 VGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWA----TRVKIAAGAARGLAYLHE 483
             Y   D+  L L+ +Y+P   L   L  +     + A      + +A  +   L ++H 
Sbjct: 67  Y-YSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHR 125

Query: 484 DCK 486
           D K
Sbjct: 126 DIK 128

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP) protein

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 13/154 (8%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTT-------SPPPSPPASNPPTS 65
                     P +I      S     + P                         S+  T+
Sbjct: 2   GHKKAKKKRKPSSIGISDDESATDSEAEPKGFREFQSVGVQVEDEKLQRRRFKRSSSVTA 61

Query: 66  SSPPASSP---PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN---PPTRSPPPPS 119
           +          P        +    +    P      +   PPP S+     TR+     
Sbjct: 62  NVQADLELEGFPGLPVVRHVSTEDKALQFGPSFQRESSEDSPPPSSSTYSAGTRTVSTQG 121

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
            +   + P   PS   + S   +   S+LPPP P
Sbjct: 122 QSAYLSDPKRRPSSEASESETVAFDESDLPPPDP 155

Length = 342

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G      +VAIK LK G    E  F  E +I+ ++ H  LV L    +S
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPE-AFLQEAQIMKKLRHDKLVPLYA-VVS 71

Query: 435 DDRRLLIYDYVPNNTLY-FHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           ++   ++ +++   +L  F   G+G+  L     V +AA  A G+AY+
Sbjct: 72  EEPIYIVTEFMGKGSLLDFLKEGDGK-YLKLPQLVDMAAQIADGMAYI 118

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 373 NLLGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHL 425
             LG G FG VY+G            +VA+K L +    Q E +F  E  I+S+ +H+++
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNI 71

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR------VKIAAGAARGLA 479
           V L+G       R ++ + +    L   L  E RP  +  +       +  A   A+G  
Sbjct: 72  VRLIGVSFERLPRFILLELMAGGDLKSFLR-ENRPRPERPSSLTMKDLLFCARDVAKGCK 130

Query: 480 YLHE 483
           YL E
Sbjct: 131 YLEE 134

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 375 LGEGGFGSVYKGYL-PDGREVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG V+ G L  D   VA+K  +       + +F  E  I+ +  H ++V L+G C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                  ++ + V        L  EG P L     +++   AA G+ YL    
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKH 114

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 378 GGFGSVY---KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           G +G V+   K     G   AIK +K    I   Q ++    E +I+S+    ++V L  
Sbjct: 4   GAYGRVFLAKKKST--GDIYAIKVIKKADMIRKNQVDQ-VLTERDILSQAQSPYVVKLY- 59

Query: 431 YCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           Y     + L L+ +Y+P   L   L   G   LD        A     L YLH 
Sbjct: 60  YSFQGKKNLYLVMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHS 111

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 32/159 (20%), Positives = 47/159 (29%), Gaps = 10/159 (6%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           S P P   +     +         PP  S  P +    S     +N        +P   +
Sbjct: 477 SKPIPEQAASTYGQTSRERQGIPEPPPGSHQPGNR--ASQDLNNNNQKQEDESTNPIGKT 534

Query: 98  PPTISPPPPV---SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
                   PV     P  ++    SS PP  S      D P +        + + PP P 
Sbjct: 535 SLRYQELTPVQEEDEPEDQTDDDDSSLPPLES-----DDDPGSDNEQGVDLTEVAPPAPV 589

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
             +  ++     P QNP  P  S    +S        PS
Sbjct: 590 YRDEKEQDEIPHPAQNPQDPTGSIGNVDSDILRSNSKPS 628

This family consists of Ebola and Marburg virus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus. Length = 717

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 1/104 (0%)

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
             +R   +     P     S+       AP     +            P    AP P+ +
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA 440

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
            P+            PP    PS +  P        P ++ +P+
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPA-PAAAPEPTAAPAPA 483

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS---SPPPPPVSKPPTTSPPPSPPA 59
              P P        P   + PPT  PPPP +    S   +  P   S PP     P+P  
Sbjct: 529 KSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSP 588

Query: 60  SNPPTSSS 67
           +   +   
Sbjct: 589 TKDSSPEE 596

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 40.2 bits (93), Expect = 0.003
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 4/188 (2%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
            SSP       P+ S   P SN   ++P           +     P+    T  S  +  
Sbjct: 590 GSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPG 649

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP----PTRSPPPPSSTPPPNSPP 128
           P   +    S P  SS    P         P P  ++P      ++  P  ++    +  
Sbjct: 650 PGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANS 709

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           +      +     ++P +N      +        PPS   +  P    +SPP  +  A +
Sbjct: 710 TTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATV 769

Query: 189 AVPPSNVP 196
            VPP+  P
Sbjct: 770 PVPPTQHP 777

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 9/101 (8%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPP---PPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
           + L PP  ++    +  P + P     P       +P        +              
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQ--REQLVARAA 106

Query: 203 PPTPASPIAPRPSNSSPNSPPPPS----TKRLSPPPGIPVP 239
            P      AP        +             +P P +P  
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 32/131 (24%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP--PASNPPTSSPPPSP 93
           P   P  P   +     P               P +  P    P  P +  P    P  P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP------SDPPANSPPPSNPPSN 147
            A  P    P  PV+  P    P     P P      P         P + P    P  +
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLD 870

Query: 148 LPPPPPSSVEP 158
           L  PPPS VEP
Sbjct: 871 LLTPPPSEVEP 881

Length = 1355

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
            +P   P+ + P ++ P     P     P P    P   + +AP  +N    + P P+  
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAP-AVDPQQNAVVAPSQANVDTAATPAPAA- 227

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSP 254
                P    P   +  G  T  + P
Sbjct: 228 --PATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P +P      PP     P   +  + P      P +  P       P A   +   PP  
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAA-AAPPAP 449

Query: 201 QTPPTPASPIA 211
              P PA  + 
Sbjct: 450 AAAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           PP P          PP     P +P +  +   A + P +  P+      P +       
Sbjct: 391 PPSPGGG----GGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446

Query: 163 PPSVPPQNPPPPPSS 177
           P       P    +S
Sbjct: 447 PAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 31/155 (20%), Positives = 40/155 (25%), Gaps = 13/155 (8%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKS--------SPPPPPVSKPPTTSPPPSPPASNP 62
            N+  PP   +     +         KS        +PP   VSK          P S  
Sbjct: 429 ENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEV 488

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  S  P  + P             +P         P    PP         PPP     
Sbjct: 489 P--SENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPP---EDGAEIPPPDWEHA 543

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
            P       +D  A +       +   PPP  S E
Sbjct: 544 APADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578

Length = 709

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 22/156 (14%), Positives = 33/156 (21%), Gaps = 21/156 (13%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            PP            +    P  P  P          P++       PP  +  PP    
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASREL----PPGPTPVPPGGFR 110

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            +  P       S+SP                       P   A       S+   +   
Sbjct: 111 GASSP--RLGADSTSPRFLYQVNF---------------PVILAPIGESNSSSEELSEEE 153

Query: 224 PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
             S    S    +         G   + +   S  S
Sbjct: 154 EHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFS 189

Length = 580

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 19/106 (17%), Positives = 24/106 (22%), Gaps = 5/106 (4%)

Query: 157 EPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
             P R   S          +S+      P        + P     +   P  P    P  
Sbjct: 54  LYPPRETGS-----GGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGG 108

Query: 217 SSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
               S P       SP     V         G + SS E  S    
Sbjct: 109 FRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEE 154

Length = 580

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 7   GPPAANSSSP--PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           G P + +S+P      SN    S  P     P +SPP   +  PP T      P+++PP 
Sbjct: 564 GNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPA 623

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
           S      SP T+   P S+   +S   + P SS    S    VS
Sbjct: 624 SH---LGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVS 664

Length = 670

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            +  P  P  +    +S           S P    +  P+       +   NSP   +P 
Sbjct: 4   ETKEPEDPADNVNDVVS---------EASSPETDLSLSPSQSEQNIENDGQNSPETQSPL 54

Query: 146 SN---LPPPPPSSVEPP------KRSPPSVPPQNPPPPPSSSPPK 181
           +     P PP ++++ P        S     PQNP     + PPK
Sbjct: 55  TELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPK 99

Length = 808

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 6/89 (6%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P       +PP   PA                 S   A     ++     P   P    P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQR---LNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           P P    P RS   P    P  +P     
Sbjct: 403 PAPE---PARSAEAPPLVAPAAAPAGLAL 428

Length = 504

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 16/121 (13%)

Query: 375 LGEGGFGSVYKGYL---PDGR--------EVAIKQLKIGGGQGEREFKAEVEIISRIHHR 423
           LG+G F ++YKG L    D           V +K L          F     ++S++ H+
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSL-AFFETASLMSQLSHK 61

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV-LDWATRVKIAAGAARGLAYLH 482
           HLV L G C+ D+  +++ +YV    L   LH E   V L W  ++ +A   A  L YL 
Sbjct: 62  HLVKLYGVCVRDE-NIMVEEYVKFGPLDVFLHREKNNVSLHW--KLDVAKQLASALHYLE 118

Query: 483 E 483
           +
Sbjct: 119 D 119

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 375 LGEGGFGSVYKGYLPDGRE-VAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           +G+GG+G V+     D  E VA+K++K   +      R    E +I++      LV L+ 
Sbjct: 9   VGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLL- 67

Query: 431 YCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLD------WATRVKIAAGAARGLAYLHE 483
           Y   DD  L L  +YVP       L+  G  VL       +   +  A  A   L Y+H 
Sbjct: 68  YAFQDDEYLYLAMEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELGYIHR 125

Query: 484 DCK 486
           D K
Sbjct: 126 DLK 128

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKI----GGGQGE--REFKAEVEIISRIHHRHLV 426
            LG G F S Y+   +  G  +A+KQ+         Q E     + E+ +++R++H H++
Sbjct: 7   QLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII 66

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
            ++G    D    L  +++   ++   L   G      A  +       RGL+YLHE+
Sbjct: 67  RMLGATCEDSHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHEN 122

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRH 424
           F    +LG+GGFG V    +   G+  A K+L   +I   +GE     E  I+ +++ R 
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF 61

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
           +VSL     + D   L+   +    L FH++  G P  D    +  AA    GL  L  +
Sbjct: 62  VVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE 121

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE--REFKA---EVEIISRIHHRHLVS 427
           LLG+G FG VY  Y  D GRE+A+KQ++      E  +E  A   E++++  + H  +V 
Sbjct: 9   LLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQ 68

Query: 428 LVGYCISD--DRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
             G C+ D  +R L I+ +++P  ++   L   G  + +  TR K       G++YLH +
Sbjct: 69  YYG-CLRDPMERTLSIFMEHMPGGSIKDQLKSYG-ALTENVTR-KYTRQILEGVSYLHSN 125

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VAIK +   G   E +F  E +++ ++ H  LV L G C  
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAIN-EGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ 70

Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                ++ +++ N  L  +L
Sbjct: 71  QKPLYIVTEFMENGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 20  VSNPPTISPPPPVSNP--PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           +S P T + P  V+ P  P   P  PP    P  +P  +  A+    +   PA     S 
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 78  PP--PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P   A+  PT +        +     P    +  P +       T
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKT 207

Length = 209

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP--ASSPPTSSPPPASNPPTSSP 89
           +S P   + P    +       P +PPA   P  +     A++   ++P   + P   SP
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 90  PPSPPASSPPTISPPP--PVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
            P+  A+  PT +              P    +  P          
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKT 207

Length = 209

>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit Tim54

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 1/93 (1%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
           + PP P       + P   V   P    P  P      T+      +P   +  P   PP
Sbjct: 195 LDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK-PP 253

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              P  SP       + P  P    P+   P P
Sbjct: 254 VPKPYISPDEYPSAPLPPELPQLLQPSLVIPFP 286

Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane. Length = 377

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 38  SSPPPPPVSKPPTTSPPPSPP--ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           ++  P         +  P+    A       S        +  P A+     +P  S  A
Sbjct: 19  TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETA 78

Query: 96  SSPPTISPPPPVSNPPTRSPPPP--SSTPP 123
            +    S     +    R+  P    ++ P
Sbjct: 79  ETSDPTSEATDTTTSEARTVTPAATETSKP 108

Length = 814

>gnl|CDD|203146 pfam04995, CcmD, Heme exporter protein D (CcmD)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 276 AVGIIAFSLIGLVVWCLRRRKK 297
           + GI    L GL+VW LRRR++
Sbjct: 10  SYGITLLVLAGLIVWSLRRRRR 31

The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. These proteins contain a predicted transmembrane helix. Length = 46

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 42/168 (25%), Positives = 52/168 (30%), Gaps = 20/168 (11%)

Query: 80  PASNPPTSSPPPSPPASS--------PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
           P   P  S  PP  P               S  P     P  +        P  +    P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP 191
           S  P  S  P  P     P  P   + PKR      P++   P     PK   P  + +P
Sbjct: 570 SKIPTLSKKPEFPKDPKHPKDPEEPKKPKR------PRSAQRPTRPKSPKL--PELLDIP 621

Query: 192 PSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
            S   P   ++P  P  P  P    SSP  P  P   +   PP  P P
Sbjct: 622 KSPKRPESPKSPKRPPPPQRP----SSPERPEGPKIIKSPKPPKSPKP 665

Length = 943

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP--PPPPSSVE 157
           ++ PP             PSS    N+P S    P + +P     PS+ P     P+++E
Sbjct: 147 SLGPPLQHRKRDAV-TASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLE 205

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKN--SPPAPIAVPPSNVPP-PPTQTPPTPASPIAPRP 214
            P  S   V    PPP  + +   +  S  A +++  S   P        TP S      
Sbjct: 206 SP--SNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGS---- 259

Query: 215 SNSSPNSPPPPST 227
           S+ +P S    + 
Sbjct: 260 SSINPVSGLDEAE 272

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 7/75 (9%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                G P     +P  P +     +        P +  P   ++  P  +   + P + 
Sbjct: 394 PGGGGGGPPGGGGAPGAPAAAAAPGAAAA----APAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 62  PPTSSSPPASSPPTS 76
                 P  +    S
Sbjct: 450 AAA---PQPAVRLNS 461

Length = 598

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS--STPPPNSPPSPPSDPPANSPPPS 142
            ++S   S P SS         +S   +  P   +  ++PP +SP    S   +      
Sbjct: 8   GSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQ 67

Query: 143 NPPSNLPPPPPS-SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
            P S       S  V P + SP +    N     +S+   +SP        S
Sbjct: 68  RPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSS 119

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 16/109 (14%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSP--PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
             S  P+      P  KP   +P  P  P    P  +++  +++       P+S  P   
Sbjct: 29  SNSKQPEK----KPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKK 84

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
           P PS                  P   P  P   P  + P +  +D P N
Sbjct: 85  PDPSKNKEEI----------EKPKDEPKKPDKKPQADQPNNVHADQPNN 123

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 25/132 (18%), Positives = 33/132 (25%), Gaps = 2/132 (1%)

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
           P  S P T SP   VS+            P P  PP          P P+   ++     
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 153 PSSVEPPKRSPPSVPPQ--NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
            S     +  P    P        P S P              +VPP     P     P 
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPT 228

Query: 211 APRPSNSSPNSP 222
                 +  +  
Sbjct: 229 ISASQPAQRDHA 240

Length = 430

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 27/190 (14%), Positives = 40/190 (21%), Gaps = 12/190 (6%)

Query: 15  SPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
           +P    +  PT +   P S PPKS   P    K    +   S   +   T       +  
Sbjct: 147 APAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAAS 206

Query: 75  TSSPPPASNPPTSS----PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
               PP  +   SS               + S     S   +                  
Sbjct: 207 LKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLD 266

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVEPPKR--------SPPSVPPQNPPPPPSSSPPKN 182
             +      P      +         E  KR                 P  P      + 
Sbjct: 267 EDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEE 326

Query: 183 SPPAPIAVPP 192
             P P+    
Sbjct: 327 PEPPPLPKKE 336

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
            P  + P  S       SK  T+ P  +  A  PP   +PPA+ P   +     +  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPP--PNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 15/55 (27%), Positives = 20/55 (36%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
            P  + P PS     N   S  S P A +  P+ PP+    PP       + S  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 68  PPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
            PA++ P  S    +N   S +  P+  A++P    PPP     P   P    
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPA---PPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                PPSP A+  P   +  A+    ++ P A+ P    P    P         P P S
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER----KPKPAS 71

Query: 109 N 109
            
Sbjct: 72  L 72

Length = 475

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS-SPPKNSPPA 186
           P   +  P  S   SN  +      PS+V  P  SPP+    +PP  PS    P  SPPA
Sbjct: 566 PGSTNSTPTGSAASSN--TTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPA 623

Query: 187 PIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPS 240
                 S++  P T    TP+SP +     S+  + P  S K  S    + + S
Sbjct: 624 ------SHLGSPST----TPSSPESSIKVASTETASPESSIKVASTESSVSMVS 667

Length = 670

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
             PPP  +   P  S   +P AS+ P +  P  S  P    P  + P   +PP S PA  
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPS--APPASIPAPP 244

Query: 98  PPTISPPPPVSNPPTRSPPPP 118
            P +         P   P  P
Sbjct: 245 IPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 375 LGEGGFGSVYKGYLPDGRE-VAIKQLKIGGGQGEREFKA-EVEIISRIHHRHLVSLVGYC 432
           LGEG + +VYKG      E VA+K++ +   +G       E+ ++  + H ++V L    
Sbjct: 8   LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI 67

Query: 433 ISDDRRLLIYDYVPNN-TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
            ++++ +L+++Y+  +   Y   HG     LD  T         +G+A+ HE+
Sbjct: 68  HTENKLMLVFEYMDKDLKKYMDTHGVRGA-LDPNTVKSFTYQLLKGIAFCHEN 119

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS----PPTSSPPPASNPPTSSPP 90
               SP PP    PP  +PP SP AS   T  SPP       P  ++ P A        P
Sbjct: 4   ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPP 117
                SS     PP  + + P  +PPP
Sbjct: 64  AGVTFSSSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 22/121 (18%), Positives = 30/121 (24%), Gaps = 9/121 (7%)

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
           N+P   P    +   P   P   +  P        +      P Q P    S        
Sbjct: 265 NTPAQTPMPERSWQTPAQTPARRISTP-----MTEEIKSWQTPLQTPAMYSSDYQAPKPE 319

Query: 185 PAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENT 244
           P            P        A    P   + + +S P    KR   PP     S E+ 
Sbjct: 320 PIYTWEELLRERFPSD----LFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDEDE 375

Query: 245 P 245
            
Sbjct: 376 D 376

This family consists of several Nucleopolyhedrovirus capsid protein P87 sequences. P87 is expressed late in infection and concentrated in infected cell nuclei. Length = 606

>gnl|CDD|225023 COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 25/112 (22%)

Query: 354 RSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAE 413
                YE  V+          L +G    VY G    G EVA+K  +       R  + E
Sbjct: 17  VEEGKYELRVE--------KELAKGTTSVVYLGE-WRGGEVALKVRR--RDSPRRNLEKE 65

Query: 414 VEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWA 465
            +I+       +++  G          +Y Y  +     ++   GRP+    
Sbjct: 66  AKIL------EILAGEGVTPE------VYFYGEDFIRMEYID--GRPLGKLE 103

Length = 201

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 18/98 (18%), Positives = 24/98 (24%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           T S   P      ++      +    T P        P        +  P ++ PP    
Sbjct: 350 TASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQF 409

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
                  SP     P  S  P    P    P  P   P
Sbjct: 410 CGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMP 447

Length = 663

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 16/86 (18%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS----PPPASNPPTSSPPPSPPAS 96
           P   + +  ++    SP   NP +  S P+S    SS    PPP  N  TS   P   ++
Sbjct: 7   PRNAILRETSSGEEQSP---NPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSA 63

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTP 122
           S    SP PP          PPSS P
Sbjct: 64  SAKLKSPLPP---------RPPSSNP 80

Length = 1320

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           L+G G +G VYKG ++  G+  AIK + + G + E E K E+ ++ +  HHR++ +  G 
Sbjct: 13  LVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE-EEEIKQEINMLKKYSHHRNIATYYGA 71

Query: 432 CIS------DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            I       DD+  L+ ++    ++   +       L       I     RGL++LH+
Sbjct: 72  FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ 129

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.93
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.93
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.93
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.91
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.91
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.9
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.89
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.89
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.87
KOG3653	534	consensus Transforming growth factor beta/activin	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.85
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.85
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.85
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.84
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.83
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.83
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.82
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.82
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.82
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.81
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.81
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.81
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.81
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.81
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.81
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.8
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.8
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.8
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.8
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.79
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.79
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.79
KOG0198	313	consensus MEKK and related serine/threonine protei	99.79
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.79
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.79
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.79
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.79
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.78
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.78
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.78
PHA02988	283	hypothetical protein; Provisional	99.78
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.78
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.78
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.78
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.78
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.78
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.78
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.78
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.78
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.78
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.78
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.78
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.78
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.78
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.78
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.77
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.77
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.77
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.77
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.77
KOG0610	459	consensus Putative serine/threonine protein kinase	99.77
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.77
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.77
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.77
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.77
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.77
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.77
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.77
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.77
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.77
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.76
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.76
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.76
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.76
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.76
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.76
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.76
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.76
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.76
KOG0605	550	consensus NDR and related serine/threonine kinases	99.76
KOG0578	550	consensus p21-activated serine/threonine protein k	99.76
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.76
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.76
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.76
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.76
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.76
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.76
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.76
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.75
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.75
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.75
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.75
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.75
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.75
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.75
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.75
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.75
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.75
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.75
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.75
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.75
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.75
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.75
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.75
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.75
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.75
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.74
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.74
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.74
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.74
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.74
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.74
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.74
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.74
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.74
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.74
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.74
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.74
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.74
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.74
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.74
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.74
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.74
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.74
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.74
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.74
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.74
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.74
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.74
PTZ00267	478	NIMA-related protein kinase; Provisional	99.74
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.74
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.74
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.74
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.74
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.73
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.73
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.73
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.73
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.73
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.73
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.73
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.73
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.73
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.73
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.73
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.73
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.73
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.73
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.73
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.73
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.73
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.73
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.73
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.73
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.73
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.73
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.73
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.73
KOG0586	596	consensus Serine/threonine protein kinase [General	99.73
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.73
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.73
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.73
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.73
PHA03212	391	serine/threonine kinase US3; Provisional	99.73
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.73
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.73
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.73
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.73
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.73
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.73
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.73
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.73
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.73
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.73
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.73
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.72
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.72
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.72
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.72
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.72
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.72
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.72
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.72
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.72
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.72
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.72
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.72
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.72
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.72
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.72
KOG0589	426	consensus Serine/threonine protein kinase [General	99.72
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.72
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.72
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.72
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.72
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.72
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.72
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.72
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.72
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.72
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.72
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.72
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.72
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.72
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.71
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.71
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.71
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.71
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.71
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.71
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.71
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.71
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.71
PHA03211	461	serine/threonine kinase US3; Provisional	99.71
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.71
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.71
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.71
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.71
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.71
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.71
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.71
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.71
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.71
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.71
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.71
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.71
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.71
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.71
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.71
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.71
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.71
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.71
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.71
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.71
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.71
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.71
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.71
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.71
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.71
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.71
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.71
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.7
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.7
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.7
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.7
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.7
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.7
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.7
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.7
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.7
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.7
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.7
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.7
PHA03209	357	serine/threonine kinase US3; Provisional	99.7
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.7
PLN00009	294	cyclin-dependent kinase A; Provisional	99.7
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.7
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.7
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.7
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.7
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.69
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.69
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.69
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.69
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.69
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.69
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.69
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.69
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.69
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.69
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.69
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.69
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.69
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.69
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.69
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.69
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.69
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.69
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.69
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.69
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.69
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.69
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.69
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.68
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.68
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.68
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.68
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.68
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.68
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.68
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.68
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.68
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.68
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.68
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.67
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.67
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.67
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.67
PHA03207	392	serine/threonine kinase US3; Provisional	99.67
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.67
PTZ00036	440	glycogen synthase kinase; Provisional	99.67
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.67
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.67
PTZ00283	496	serine/threonine protein kinase; Provisional	99.67
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.67
PTZ00284	467	protein kinase; Provisional	99.66
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.66
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.66
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.66
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.66
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.66
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.66
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.66
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.66
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.66
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.66
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.66
KOG0584	632	consensus Serine/threonine protein kinase [General	99.66
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.66
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.66
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.66
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.66
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.65
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.65
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.65
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.65
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.65
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.65
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.65
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.65
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.65
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.64
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.64
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.64
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.64
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.64
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.64
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.64
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.64
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.64
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.64
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.64
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.64
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.64
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.63
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.63
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.63
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.63
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.62
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.62
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.62
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.62
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.62
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.62
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.62
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.62
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.62
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.61
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.61
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.61
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.6
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.6
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.6
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.6
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.6
PRK09188	365	serine/threonine protein kinase; Provisional	99.59
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.59
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.59
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.59
PHA03210	501	serine/threonine kinase US3; Provisional	99.59
KOG1152	772	consensus Signal transduction serine/threonine kin	99.58
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.57
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.57
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.56
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.56
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.56
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.55
PRK10345	210	hypothetical protein; Provisional	99.55
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.55
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.54
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.53
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.53
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.52
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.5
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.49
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.49
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.47
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.47
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.46
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.44
PRK14879	211	serine/threonine protein kinase; Provisional	99.43
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.42
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.42
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.42
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.4
smart00090	237	RIO RIO-like kinase.	99.4
PHA02882	294	putative serine/threonine kinase; Provisional	99.4
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.39
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.38
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.35
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.35
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.34
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.33
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.33
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.32
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.29
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.27
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.26
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.24
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.24
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.24
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.21
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.18
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.14
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.13
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.09
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.04
PRK12274	218	serine/threonine protein kinase; Provisional	99.03
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.96
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.93
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.92
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.82
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.74
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.64
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.56
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.43
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.34
KOG1243	690	consensus Protein kinase [General function predict	98.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.32
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.18
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.13
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.08
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.06
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.0
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.98
PLN02876	822	acyl-CoA dehydrogenase	97.96
PRK10593	297	hypothetical protein; Provisional	97.94
PLN00181	793	protein SPA1-RELATED; Provisional	97.87
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.85
KOG3087	229	consensus Serine/threonine protein kinase [General	97.82
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.77
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.73
PF01636	239	APH: Phosphotransferase enzyme family This family	97.71
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.71
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.45
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.45
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.4
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.37
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.31
PRK09902	216	hypothetical protein; Provisional	97.27
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.13
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.12
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.11
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.06
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.0
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	96.99
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.97
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	96.96
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.96
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	96.71
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.66
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.56
KOG0576	829	consensus Mitogen-activated protein kinase kinase	96.48
KOG2270	520	consensus Serine/threonine protein kinase involved	96.48
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.37
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	96.18
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.17
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.16
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.12
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.9
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	95.9
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.89
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.56
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	95.54
PHA03247	3151	large tegument protein UL36; Provisional	95.52
PHA03247	3151	large tegument protein UL36; Provisional	95.47
PLN02756	418	S-methyl-5-thioribose kinase	95.41
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	95.38
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	95.32
PRK05231	319	homoserine kinase; Provisional	95.26
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	95.15
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	94.61
PF03302	397	VSP: Giardia variant-specific surface protein; Int	94.59
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	94.51
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	94.48
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	94.03
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	93.74
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	93.43
KOG3021	313	consensus Predicted kinase [General function predi	92.91
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	92.84
PF15345	233	TMEM51: Transmembrane protein 51	92.67
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	92.59
PTZ00384	383	choline kinase; Provisional	92.55
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.51
KOG4258	1025	consensus Insulin/growth factor receptor (contains	92.38
PRK12396	409	5-methylribose kinase; Reviewed	92.26
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	92.21

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.7e-30  Score=262.99  Aligned_cols=139  Identities=58%  Similarity=0.999  Sum_probs=125.7

Q ss_pred             CcccccHHHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEE
Q 011175          353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC  432 (492)
Q Consensus       353 ~~~~~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~  432 (492)
                      ....|+|+++..++++|...++||+|+||.||+|.+.+|+.||||+++.......++|.+|+++|.+++|+|||+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            34569999999999999999999999999999999989999999988765433156699999999999999999999999


Q ss_pred             EeCC-eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 011175          433 ISDD-RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       433 ~~~~-~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii~  491 (492)
                      .+.+ ..+||||||.+|+|.++|+......|+|.+|++||++||+||+|||+.|...|||
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiH  200 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIH  200 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEec
Confidence            9998 4999999999999999999765436899999999999999999999999987876

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.93  E-value=4.4e-26  Score=232.70  Aligned_cols=126  Identities=30%  Similarity=0.466  Sum_probs=112.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcch-HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~-~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+.+.+.++||+|.||+|.+|+...+..||||+|+..+.++. ++|.+||++|.+|+|+|||+|+|+|..++.++||+||
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            455677899999999999999997779999999997766655 7899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      |++|||..||..+....++-...++||.|||.||+||      |+|...++++
T Consensus       617 mEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcL  669 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCL  669 (807)
T ss_pred             HhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhcccccccee
Confidence            9999999999877655566677889999999999998      7887777655

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4e-26  Score=243.65  Aligned_cols=126  Identities=28%  Similarity=0.473  Sum_probs=107.1

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      .+.+.+..+.||+|+||+||+|+..      +...||||.||..+.. ..++|+||+++|.+|+|+|||+|+|+|.+++.
T Consensus       484 ~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P  563 (774)
T KOG1026|consen  484 PRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDP  563 (774)
T ss_pred             chhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCe
Confidence            3455666788999999999999853      3457999999976665 56799999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC------------CCCCCHHHHHHHHHHHHHHHHHh------hcCCCCcee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEG------------RPVLDWATRVKIAAGAARGLAYL------HEDCKYLIF  490 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~------------~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii  490 (492)
                      +|||+|||.+|||+++|+...            +..|+..+.|.||.|||.||+||      |+|.-.++.
T Consensus       564 ~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNC  634 (774)
T KOG1026|consen  564 LCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNC  634 (774)
T ss_pred             eEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhc
Confidence            999999999999999996421            12288999999999999999999      777766554

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-25  Score=220.29  Aligned_cols=125  Identities=27%  Similarity=0.369  Sum_probs=109.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC--CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|.+.+.||+|+||.||+|+++ ++..||||.+...  ..+..+.+.+||.||++|+|+|||+|++++++++.+||||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            456777888999999999999964 5789999999755  3344566899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      |||.||||.+||+++++  +.+.....++.|||.||+||      |+|.|+-+|++
T Consensus        89 EyC~gGDLs~yi~~~~~--l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLL  142 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGR--LPEATARHFMQQLASALQFLHENNIIHRDLKPQNILL  142 (429)
T ss_pred             EeCCCCCHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEe
Confidence            99999999999987654  99999999999999999999      56777777664

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=221.68  Aligned_cols=119  Identities=32%  Similarity=0.594  Sum_probs=103.9

Q ss_pred             CccceeccCCceeEEEEEcCCCCE-EEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCC-eEEEEEecC
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGRE-VAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDYV  445 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~-VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-~~~lV~Ey~  445 (492)
                      ...+.||+|+||+||+|.| +|+. ||||+++......  .++|.+|+.+|.+|+|+|||+|+|+|.+.. .++||||||
T Consensus        44 ~~~~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKW-RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             hhhhhcccCCceeEEEEEe-CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            3446699999999999999 5555 9999998654333  458999999999999999999999999887 799999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii~  491 (492)
                      .+|+|+++|++..+..|++..+++||+|||+||+|||++.+  |||
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIH  166 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP--IIH  166 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eee
Confidence            99999999988545579999999999999999999999887  554

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.91  E-value=2e-24  Score=226.97  Aligned_cols=123  Identities=28%  Similarity=0.428  Sum_probs=108.4

Q ss_pred             CCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .+.+.++||.|.||+||+|+++    +...||||.||..... .+++|+.|+.||.+++|+||++|.|+.......+||.
T Consensus       630 ~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  630 CVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             heEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEh
Confidence            3567899999999999999974    2456999999976543 4568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      |||+||.|..+|+.++.+ |.+.+++.|.++||.||.||      |+|..-++|+
T Consensus       710 EyMENGsLDsFLR~~DGq-ftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNIL  763 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQNDGQ-FTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNIL  763 (996)
T ss_pred             hhhhCCcHHHHHhhcCCc-eEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhhee
Confidence            999999999999877654 89999999999999999998      8887777765

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-24  Score=220.88  Aligned_cols=122  Identities=29%  Similarity=0.480  Sum_probs=108.0

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      +.+++.||+|.||+||+|+|++...||||.++.. ....++|++|++||++|+|.|||+|+|+|..++.+|||||||.+|
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccC
Confidence            3445789999999999999977779999999865 334568999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      +|.+||+.+++..+...+.+.||.|||+||+||      |+|..-+||+
T Consensus       287 sLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiL  335 (468)
T KOG0197|consen  287 SLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNIL  335 (468)
T ss_pred             cHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhhee
Confidence            999999986667799999999999999999998      6666666665

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=3.1e-23  Score=206.68  Aligned_cols=110  Identities=29%  Similarity=0.484  Sum_probs=96.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHh--CCCCcccceeeEEEeCC----eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----RRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~l~g~~~~~~----~~~l  440 (492)
                      ..+.+.+.||+|+||+||+|+| .|+.||||++..   .+++.|.+|.+|+..  |+|.||+.|++.-..++    ++||
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s---rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwL  286 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSS---RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWL  286 (513)
T ss_pred             heeEEEEEecCccccceeeccc-cCCceEEEEecc---cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEE
Confidence            4577889999999999999999 889999999964   456789999999886  59999999999876544    5689


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.||.++|+|+|||.+.   .++....+++|+.+|.||+|||.
T Consensus       287 vTdYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~  326 (513)
T KOG2052|consen  287 VTDYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHM  326 (513)
T ss_pred             eeecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHH
Confidence            99999999999999763   58999999999999999999974

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=3.8e-23  Score=214.03  Aligned_cols=123  Identities=27%  Similarity=0.433  Sum_probs=105.3

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCC--C--CE-EEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeE
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPD--G--RE-VAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~--g--~~-VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      ..++...++..+.++||+|+||+||+|.+..  +  .. ||||..+...   .....+|++|+++|++|+|+|||+|||+
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            3444556677778999999999999998643  2  23 8999998522   3345689999999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       432 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.....+|||||||.||+|.+||.+... .+++.+++++++|+|+||+|||.
T Consensus       230 a~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~  280 (474)
T KOG0194|consen  230 AVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHS  280 (474)
T ss_pred             EcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999987654 58999999999999999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.2e-22  Score=197.86  Aligned_cols=126  Identities=23%  Similarity=0.360  Sum_probs=107.2

Q ss_pred             HhcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCc-------chHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQ-------GEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~-------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      ..+.|.+.+.||+|+||.|-+|. .++|+.||||++++....       ...+..+|++||++|+|+|||+++++|+..+
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            45667888999999999999998 457999999999643211       1234579999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ..|||||||+||+|++++..++.  +.+.....+++|++.|+.|||      +|+|+.+|++
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~--l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl  309 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKY--LREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILL  309 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccc--cccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEe
Confidence            99999999999999999987654  677777889999999999995      6888888864

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-21  Score=196.83  Aligned_cols=113  Identities=32%  Similarity=0.535  Sum_probs=96.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHh--CCCCcccceeeEEEeCC----eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----RRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~l~g~~~~~~----~~~l  440 (492)
                      ..+.+.++||+|+||.||||++ +++.||||++..   .+.+.|..|-+|++.  ++|+||++|+++-....    +++|
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywL  285 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWL  285 (534)
T ss_pred             CchhhHHHhhcCccceeehhhc-cCceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeE
Confidence            3445568899999999999999 669999999974   345679988888775  58999999999877555    7899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      |+||.++|+|.+||..+   .++|...++||..+++||+|||++..
T Consensus       286 Vt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p  328 (534)
T KOG3653|consen  286 VTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELP  328 (534)
T ss_pred             EeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999765   48999999999999999999997653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=3.2e-21  Score=222.41  Aligned_cols=123  Identities=27%  Similarity=0.538  Sum_probs=102.4

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      ++++++.   ..|...++||+|+||.||+|++ .+|+.||||+++....    ...+|+++|++++|+|||+++|+|.+.
T Consensus       683 ~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~  755 (968)
T PLN00113        683 ITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS----IPSSEIADMGKLQHPNIVKLIGLCRSE  755 (968)
T ss_pred             hhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc----ccHHHHHHHhhCCCCCcceEEEEEEcC
Confidence            3444443   4567788999999999999986 5788999999874322    223568899999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii~  491 (492)
                      +..|||||||++|+|++++++     ++|.++++|+.|||+||+|||.++...|||
T Consensus       756 ~~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH  806 (968)
T PLN00113        756 KGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVV  806 (968)
T ss_pred             CCCEEEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeec
Confidence            999999999999999999952     799999999999999999999776555544

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.2e-21  Score=216.41  Aligned_cols=117  Identities=30%  Similarity=0.537  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCC--CC----EEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD--GR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~--g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      .+.++.+.||+|+||.||+|++.+  |.    .||||.|+... ..++.+|++|..+|++++|+|||+|+|+|.+.+..+
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            345667899999999999999643  32    48999997654 445678999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEG-----RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+|||++|||..||++.+     ...|...+++.||+|||+||+|||+
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~  820 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES  820 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh
Confidence            9999999999999998652     2358899999999999999999954

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.4e-21  Score=195.95  Aligned_cols=124  Identities=25%  Similarity=0.388  Sum_probs=103.4

Q ss_pred             cCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV  441 (492)
                      +.|+.+++||+|.||.||+++ +.+|+.||+|+++.+..+.  .....|||.||++|+|+|||+|.|+..+.  ..+|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            456667889999999999998 4679999999998665333  35678999999999999999999999876  689999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      ||||++ ||.-++...+ -.|++.++..|+.||++||+||      |+|+|..+|++
T Consensus       197 FeYMdh-DL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLi  251 (560)
T KOG0600|consen  197 FEYMDH-DLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILI  251 (560)
T ss_pred             Eecccc-hhhhhhcCCC-cccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEE
Confidence            999976 6777766533 3489999999999999999997      56888877763

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.4e-21  Score=197.16  Aligned_cols=116  Identities=21%  Similarity=0.326  Sum_probs=103.3

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..|+..++||+|+|+.||+++. ..|+.||+|++.+.   .....+.+.+||+|.++|+|+|||+|+++|++.+++|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4588889999999999999996 78999999999542   2344567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+|+|..++.  +++.|++.+.+.|..||+.||.|||++
T Consensus        98 ELC~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~  137 (592)
T KOG0575|consen   98 ELCHRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSL  137 (592)
T ss_pred             EecCCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998886  345699999999999999999999763

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-21  Score=200.94  Aligned_cols=123  Identities=24%  Similarity=0.368  Sum_probs=109.8

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      +++++..+.++....+||-|.||.||.|.|+. ...||||.|+.+ ....++|++|+.+|+.|+|+|+|+|+|+|..+-.
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            46666666777788999999999999999865 567999999853 3456799999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      +|||.|||.+|+|.+||++.++..+.-..++.||.||+.||+||.
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE  382 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE  382 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888888889999999999999983

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.83  E-value=3.5e-21  Score=189.69  Aligned_cols=125  Identities=24%  Similarity=0.406  Sum_probs=109.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcch---HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~---~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ..+|++.+.||+|.||+|-+++. ..|+.||||.|+++..+++   ..+++||+||..|+|+||+.+|.+|+..+.+.||
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence            35678889999999999999984 6799999999986554444   4688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||..+|+|++|+.+++  .|.+....+|+.||..|+.|+|      +|.|+.+|+|
T Consensus       132 MEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILL  186 (668)
T KOG0611|consen  132 MEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILL  186 (668)
T ss_pred             EEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhccceecccchhheee
Confidence            99999999999997655  4999999999999999999996      4667777764

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-20  Score=182.63  Aligned_cols=121  Identities=27%  Similarity=0.347  Sum_probs=102.7

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCC-eEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-~~~lV~Ey~  445 (492)
                      ++..+.||+|+.|.|||++++ +++.+|+|++..+.. ...+++.+|++|+++++|+|||++||+|..++ .++|+||||
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYM  160 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYM  160 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhc
Confidence            344578999999999999975 578899999964433 34568999999999999999999999999998 499999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc-------CCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE-------DCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~-------~~k~~ii~  491 (492)
                      ++|+|.+++.+.++  +.+...-+||.+|++||.|||+       |+|+.+|+
T Consensus       161 DgGSLd~~~k~~g~--i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlL  211 (364)
T KOG0581|consen  161 DGGSLDDILKRVGR--IPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLL  211 (364)
T ss_pred             CCCCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHee
Confidence            99999999876544  8999999999999999999985       55555443

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.82  E-value=3.3e-20  Score=181.53  Aligned_cols=115  Identities=32%  Similarity=0.587  Sum_probs=98.2

Q ss_pred             ccceeccCCceeEEEEEcC-----CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          371 DQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.+.||+|.||.||+|.+.     .+..|+||+++..... ..++|++|+++|++++|+||++++|+|...+..+|||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4578999999999999975     2567999999754333 357899999999999999999999999988889999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |.+|+|.++|+......+++.++++|+.|||+||+|||++.
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~  123 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN  123 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999998875556999999999999999999999853

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.82  E-value=2e-20  Score=192.89  Aligned_cols=120  Identities=29%  Similarity=0.550  Sum_probs=103.8

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      +++.+..+.+.+.+.||+|+||+||+|+|.+  +||||+|+...-.  ..+.|++||.+|++-+|.||+-|+|||...+.
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~  462 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL  462 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce
Confidence            5555556667778999999999999999843  5999999876543  34689999999999999999999999988766


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                       .||..+|+|.+|+.+||..+ ..|+..+.++||.|||+||+|||.
T Consensus       463 -AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHA  506 (678)
T KOG0193|consen  463 -AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHA  506 (678)
T ss_pred             -eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhh
Confidence             99999999999999999654 358999999999999999999964

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=7.4e-21  Score=176.43  Aligned_cols=126  Identities=30%  Similarity=0.379  Sum_probs=108.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++++.||+|.||.||+|+.+ ++..||+|++.+..   ....+++++|++|-..|+|+||+++||+|.++...||+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            356888999999999999999864 56789999995322   23346899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +||..+|.|+..|.+.....+++...-.++.|+|.||.|+|      +|+|..+++
T Consensus       101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlL  156 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLL  156 (281)
T ss_pred             EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhc
Confidence            99999999999998666666899999999999999999985      667766654

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-20  Score=198.71  Aligned_cols=112  Identities=29%  Similarity=0.463  Sum_probs=94.8

Q ss_pred             CccceeccCCceeEEEEEc-CCCC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          370 ADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~-~~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +..++||.|+||+||+|.| .+|+    .||||++..... +...+|++|+.+|.+|+|+||+||+|+|.... +.||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            3458899999999999986 3333    589999875433 34568999999999999999999999998766 789999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||.+|.|.+|++.+ |..+..+..+.|++|||+||.|||+
T Consensus       778 ~mP~G~LlDyvr~h-r~~igsq~lLnw~~QIAkgM~YLe~  816 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREH-RDNIGSQDLLNWCYQIAKGMKYLEE  816 (1177)
T ss_pred             hcccchHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999864 3458888999999999999999963

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-20  Score=189.93  Aligned_cols=125  Identities=24%  Similarity=0.312  Sum_probs=105.3

Q ss_pred             HhcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCC-CCcccceeeEEEeCC-eEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDD-RRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~-~~~l  440 (492)
                      ..++|...++||.|.||.||+|+ ...|+.||||+++..- ..++-.-+||+..|++|+ |+|||+|.+++.+.+ .+||
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            34668888999999999999998 4568899999997543 223334579999999998 999999999999988 8999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||||+. +|+.++.++ ++.|.+..+..|++||++||+|+|      +|.|+.+|+
T Consensus        88 VfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiL  142 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENIL  142 (538)
T ss_pred             eHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheE
Confidence            9999965 699888776 668999999999999999999985      567776665

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-20  Score=195.76  Aligned_cols=123  Identities=25%  Similarity=0.414  Sum_probs=105.9

Q ss_pred             CCccceeccCCceeEEEEEcCC--CC--EEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          369 FADQNLLGEGGFGSVYKGYLPD--GR--EVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~--g~--~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +.+.++||+|+||.|++|.|+.  |+  .||||+|+.+... ...+|++|+.+|.+|+|+|||+|||+..+ ..++||||
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            3455889999999999999853  43  5899999866544 56789999999999999999999999987 78899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      ++..|+|++.|++..+..|-...++.+|.|||.||+||      |+|..-++|++
T Consensus       191 LaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlll  245 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLL  245 (1039)
T ss_pred             hcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhee
Confidence            99999999999986666788889999999999999998      77776666653

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.81  E-value=5.2e-20  Score=188.05  Aligned_cols=122  Identities=26%  Similarity=0.412  Sum_probs=105.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|.+.+.||+|.||+||||+.+ +.+.||+|.+.+...  ++.+.+++|++|+++|+|+|||.++++|+...++|+|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            56888899999999999999854 578899999975543  345689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.| +|+.+|..+++  |.+.....|++|+..||.|||+      |.|+.+|+
T Consensus        82 ~a~g-~L~~il~~d~~--lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniL  132 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDGK--LPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNIL  132 (808)
T ss_pred             hhhh-hHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceee
Confidence            9977 99999987765  8999999999999999999975      44555444

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.81  E-value=1.1e-19  Score=170.86  Aligned_cols=123  Identities=26%  Similarity=0.461  Sum_probs=104.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +.|...++||||.||.||+|+. ..|+.||||+++..+..+  ....+|||++|++|+|+||+.|+++|-..+.+-||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            3566778999999999999984 569999999998765433  3468899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||+ .||+..++++. ..|.-.+...++.++++||+|||      +|+|+.+++
T Consensus        82 fm~-tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLL  133 (318)
T KOG0659|consen   82 FMP-TDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLL  133 (318)
T ss_pred             ecc-ccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceE
Confidence            995 47888886554 56888999999999999999985      677877765

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.81  E-value=1e-19  Score=178.61  Aligned_cols=125  Identities=30%  Similarity=0.457  Sum_probs=108.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.++||+|+||+||+.+. +.++.+|+|+|++..   ..+.+..+.|..||.+++|+.||+|+..|.+.+.+|||
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            35688899999999999999985 458899999997543   23456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      +||+.||+|+.+|.++++  +.+....-++..|+.||+|||+      |.|+.||++
T Consensus       104 ld~~~GGeLf~hL~~eg~--F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILL  158 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGR--FSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILL  158 (357)
T ss_pred             EeccCCccHHHHHHhcCC--cchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeee
Confidence            999999999999987765  7888888889999999999984      667777664

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.80  E-value=4.5e-20  Score=176.30  Aligned_cols=123  Identities=19%  Similarity=0.234  Sum_probs=102.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-ch-HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GE-REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~-~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +.|+.+.++|||+||.||+|+.+ .|+.||||++.....+ .. +--+|||++|++|+|+|||.|+++|.....++||||
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            45667789999999999999965 4999999999754332 22 347899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||+..-|+++-+...  .++.....+|++|+++|+.|+|      +|+|+.+|+
T Consensus        82 ~~dhTvL~eLe~~p~--G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENIL  133 (396)
T KOG0593|consen   82 YCDHTVLHELERYPN--GVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENIL  133 (396)
T ss_pred             ecchHHHHHHHhccC--CCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheE
Confidence            999877766544332  3788888999999999999985      677887775

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=2.1e-19  Score=184.53  Aligned_cols=116  Identities=20%  Similarity=0.274  Sum_probs=101.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|+.. +|+.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+.+..||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            46888999999999999999864 58899999997432   223456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||.+|+|.++++.++  .+.+..++.|+.||++||+|||+.
T Consensus        81 E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~  120 (364)
T cd05599          81 EYLPGGDMMTLLMKKD--TFTEEETRFYIAETILAIDSIHKL  120 (364)
T ss_pred             CCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999997654  489999999999999999999753

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.80  E-value=3.5e-19  Score=174.64  Aligned_cols=117  Identities=26%  Similarity=0.429  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||.||+|++.    ++..||+|+++.... ...+.|.+|+.+|++++|+||++++|+|...+..+||
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            45788899999999999999753    356899999986533 2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++.... ..+.|.++++++.||++||+|||+.
T Consensus        85 ~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~  126 (266)
T cd05064          85 TEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEM  126 (266)
T ss_pred             EEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999987643 3588999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.80  E-value=2.1e-19  Score=175.11  Aligned_cols=120  Identities=31%  Similarity=0.511  Sum_probs=107.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|.+.++||+|+||.||+|++.+++.||+|+++........+|.+|+++|++|+|+||++++++|.+.+..+|||||+
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   84 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELM   84 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeec
Confidence            35577789999999999999998788999999998665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+|+|.+++++.....+++.++++|+.||++||+|||+++
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~  124 (261)
T cd05148          85 EKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN  124 (261)
T ss_pred             ccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999998755556899999999999999999998643

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.79  E-value=4.4e-19  Score=183.24  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=99.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++. .+|+.||||++....   ....+.|.+|+++|++++|+|||+++++|.+.+.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4688889999999999999985 468899999986432   223457889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+|+|++++...+  .+.+...+.|+.||+.||+|||+
T Consensus        81 E~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~  119 (377)
T cd05629          81 EFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLAIEAVHK  119 (377)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999997543  47888888999999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.79  E-value=2.8e-19  Score=181.66  Aligned_cols=126  Identities=24%  Similarity=0.388  Sum_probs=100.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC-
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD-  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~-  436 (492)
                      .++|++.++||+|+||.||+|++      .+++.||||+++.... ...+.|.+|+++|.++ +|+|||+++|+|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            35688889999999999999974      1346799999975432 2345799999999999 8999999999988644 


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC----------------------------------------------------------
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG----------------------------------------------------------  458 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~----------------------------------------------------------  458 (492)
                      .++||||||.+|+|.++|+...                                                          
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD  165 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence            5789999999999999986432                                                          


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          459 --RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       459 --~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                        +..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       166 ~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil  206 (338)
T cd05102         166 LWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNIL  206 (338)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEE
Confidence              1237788889999999999999975      45555543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.9e-19  Score=182.40  Aligned_cols=127  Identities=22%  Similarity=0.320  Sum_probs=107.3

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC----CC-cchHHHHHHHHHHHhCC-CCcccceeeEEEeCC
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG----GG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDD  436 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~----~~-~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~  436 (492)
                      ...++|.+.+.||+|.||.||+|+. ..|+.||||+++..    .. ...+.+.+|+.+|++++ |+||+++++++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3456788999999999999999974 46899999987643    12 23345778999999998 999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      .+|||||||.+|+|++++.+.++  +.+....+++.||+.|++|||      +|+|..+|+|
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~--l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENill  153 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGR--LKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILL  153 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCC--CChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEe
Confidence            99999999999999999987443  788899999999999999996      4677766654

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.79  E-value=4.2e-19  Score=176.17  Aligned_cols=116  Identities=27%  Similarity=0.454  Sum_probs=100.2

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCC--eEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~--~~~lV~E  443 (492)
                      .+|...+.||+|+||.||++... +|+.+|||.+...+....+.+.+|+++|++|+|+|||+++|.....+  .++|+||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            34666789999999999999964 48999999997654333567999999999999999999999855544  6889999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+.+|+|.+++.+.+. .|.+...++++.||++||+|||+
T Consensus        97 y~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs  135 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHS  135 (313)
T ss_pred             ccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999987765 59999999999999999999984

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.79  E-value=8.6e-19  Score=175.29  Aligned_cols=118  Identities=27%  Similarity=0.470  Sum_probs=98.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-----------------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccce
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-----------------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-----------------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      ++|.+.++||+|+||.||+|++.+                 +..||||+++..... ...+|.+|+++|.+|+|+||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            467888999999999999997532                 236999998754333 34579999999999999999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCC-----------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEG-----------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~-----------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+.+..+|||||+.+|+|.+++....                 ...+.|.+.++|+.||++||+|||+.
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~  157 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL  157 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999886421                 12467888999999999999999863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.79  E-value=5.9e-19  Score=182.65  Aligned_cols=114  Identities=21%  Similarity=0.232  Sum_probs=99.5

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .|+.+++||+|+||+||+|+. .+++.||||+++...   ....+.|.+|+++|++++|+||++++++|.+.+.+|||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            577889999999999999985 457899999996432   2334578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||.+|+|.+++.+.+  .+.+.....++.||+.||+|||+
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH~  119 (381)
T cd05626          82 YIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVHK  119 (381)
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999987654  47888888999999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.79  E-value=7.4e-19  Score=178.24  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.+.||+|+||.||+|++. +|+.||||+++...   ....+.|.+|+++|++|+|+||++++++|.+++..||||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            56888899999999999999864 58899999996432   223457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|++++.+.+  .+.+.....|+.||++||+|||+
T Consensus        98 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~  136 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHS  136 (329)
T ss_pred             cCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997654  37888888999999999999976

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.79  E-value=9.1e-19  Score=173.68  Aligned_cols=115  Identities=29%  Similarity=0.387  Sum_probs=99.5

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |+..++||+|+||.||+|.+ .+|+.||||+++....   .....|.+|+++|++++|+||++++++|.+++..++||||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            66779999999999999985 5689999999864321   2234688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+|+|.+++.......+++.+++.++.||++||+|||+
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  120 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR  120 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999888865444458999999999999999999976

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.78  E-value=1.3e-18  Score=169.24  Aligned_cols=117  Identities=24%  Similarity=0.410  Sum_probs=102.2

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|+..+.||+|+||.||++++.++..+|||.++.. ....++|.+|+++|++++|+||++++++|.+.+..+|||||+.
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~   82 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME   82 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCC
Confidence            357778899999999999999878888999998643 2335689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +|+|.++++... ..++|..++.++.||++||+|||++.
T Consensus        83 ~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~  120 (256)
T cd05114          83 NGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNS  120 (256)
T ss_pred             CCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999987543 24899999999999999999998643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.78  E-value=7.5e-19  Score=168.92  Aligned_cols=128  Identities=24%  Similarity=0.395  Sum_probs=112.5

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS  434 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~  434 (492)
                      -+++++.+.++     ++||+|+||.|--+. +.+|.++|||+|.+...+.+....+|++++.++ .|.||++|++||++
T Consensus        73 g~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   73 GKFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             chHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            35788877775     789999999999887 678999999999888777778899999999998 69999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ++.+|||||-|.||.|..+|+++.  .+.+.++.++..+||.||+|||      +|.|+.+|+
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiL  208 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTKGIAHRDLKPENIL  208 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhcCcccccCCcccee
Confidence            999999999999999999998654  5899999999999999999996      567776554

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.78  E-value=8.5e-19  Score=180.24  Aligned_cols=115  Identities=18%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|+..++||+|+||+||+++.. +++.||||+++...   ....+.+.+|+++|.+++|+||+++++++.+.+.+||||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            46888999999999999999854 58899999996432   222356889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+|+|++++.+++  .+++.+++.++.||+.||+|||+
T Consensus        81 E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~  119 (363)
T cd05628          81 EFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLAIDSIHQ  119 (363)
T ss_pred             cCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999997654  48999999999999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>PHA02988 hypothetical protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=172.17  Aligned_cols=110  Identities=25%  Similarity=0.353  Sum_probs=95.8

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcc---hHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEEEEec
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIYDY  444 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~lV~Ey  444 (492)
                      ...||+|++|.||+|.+ +|+.||||+++......   .+.|.+|+++|++++|+|||+++|+|.+    ....+|||||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            36799999999999998 78899999997543332   3578899999999999999999999987    3467899999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |.+|+|.+++++++  .++|..+++|+.||++||+|||+.
T Consensus       104 ~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~  141 (283)
T PHA02988        104 CTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKY  141 (283)
T ss_pred             CCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhc
Confidence            99999999997653  489999999999999999999964

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.78  E-value=1.2e-18  Score=180.00  Aligned_cols=115  Identities=20%  Similarity=0.256  Sum_probs=99.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.+.||+|+||.||+++. .+++.||||+++...   ....+.+.+|+++|++++|+||++++++|.+++.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            3688899999999999999985 458899999986422   223456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+|+|.++|.+.+  .+.+.....|+.||++||+|||+
T Consensus        81 E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~  119 (376)
T cd05598          81 DYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIESVHK  119 (376)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997643  47888888899999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.78  E-value=5.3e-19  Score=182.70  Aligned_cols=91  Identities=25%  Similarity=0.399  Sum_probs=77.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      .++|.+.++||+|+||.||+|++      .++..||||+++... ....+.|.+|+++|+++ +|+|||+++|+|.+.+.
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            34677889999999999999963      235579999997443 23345799999999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011175          438 RLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~  456 (492)
                      .+||||||.+|+|.++++.
T Consensus       114 ~~lv~E~~~~g~L~~~l~~  132 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRR  132 (375)
T ss_pred             ceeeehhccCCcHHHHHHh
Confidence            9999999999999988864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.78  E-value=5e-19  Score=168.81  Aligned_cols=124  Identities=26%  Similarity=0.323  Sum_probs=107.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|+..+.||.|+||+|.+.+. .+|..+|+|+|+.....   ..+...+|..||+.+.|++|++|++-|.+.+++||||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            4577789999999999999985 35889999999765432   3346788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      ||+.||.|+.+|++.++  +++...+-+|.||+.||+|||+      |.|+.+|++
T Consensus       124 eyv~GGElFS~Lrk~~r--F~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLl  177 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGR--FSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLL  177 (355)
T ss_pred             eccCCccHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeee
Confidence            99999999999987765  8999999999999999999995      667766653

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=1.3e-18  Score=176.48  Aligned_cols=115  Identities=26%  Similarity=0.326  Sum_probs=100.8

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|++. +++.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+.+..||||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            36888999999999999999965 58899999997432   233457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+|+|.++++..+  .+.+.+.+.++.||++||+|||+
T Consensus        81 e~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~  119 (333)
T cd05600          81 EYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHE  119 (333)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997544  48889999999999999999985

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=3.1e-20  Score=175.82  Aligned_cols=117  Identities=21%  Similarity=0.361  Sum_probs=97.5

Q ss_pred             cCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceee-EEEeCCe-EEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVG-YCISDDR-RLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g-~~~~~~~-~~lV  441 (492)
                      .+|+++++||+|.||+|||+. +.+|..||.|.++-+.  .+..+++..||.+|++|+|+|||++++ .|.+++. ++||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            346677899999999999997 5689999999997443  334468999999999999999999999 4444444 7899


Q ss_pred             EecCCCCCHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLH--GEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~--~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+|||...+.  +..++.+.+....+++.|+++||.++|.
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~  142 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHS  142 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhc
Confidence            99999999987775  3445678999999999999999998876

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.78  E-value=9e-19  Score=172.79  Aligned_cols=110  Identities=24%  Similarity=0.385  Sum_probs=93.2

Q ss_pred             eeccCCceeEEEEEcCC-------------------------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccce
Q 011175          374 LLGEGGFGSVYKGYLPD-------------------------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~-------------------------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      +||+|+||.||+|.+..                         ...|+||+++.......++|.+|++++++++|+||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            59999999999997411                         12488998875444445679999999999999999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+.+..+|||||+.+|+|..++.+.+ ..+++..+++|+.||++||+|||+.
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~  136 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLEDK  136 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999998886533 3588999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=7e-19  Score=175.12  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|+.. +|+.||||+++...   ....+.|.+|+++|++++|+||+++++++.+.+..||||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            36788899999999999999864 58899999986432   223456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++...+  .+.+...+.|+.||++||+|||++
T Consensus        81 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  120 (291)
T cd05612          81 EYVPGGELFSYLRNSG--RFSNSTGLFYASEIVCALEYLHSK  120 (291)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999997654  488899999999999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.78  E-value=2.1e-18  Score=175.28  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=102.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||+|+||.||++++. +++.||+|+++..... ..++|.+|+++|++|+|+||++++|+|++++..+||||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            367888999999999999999864 5788999988754322 33579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+|+|.+++.+.+  .+.+...+.++.||++||+|||++
T Consensus        84 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~  122 (333)
T cd06650          84 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREK  122 (333)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999997643  378889999999999999999963

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=1.4e-18  Score=172.36  Aligned_cols=117  Identities=30%  Similarity=0.407  Sum_probs=100.6

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +|+..++||+|+||.||++.. .+++.||||+++....   .....|.+|+++|++|+|+||++++++|.+.+.++||||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            367789999999999999985 4688999999964322   223468899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||.+|+|.+++.......+++..++.|+.||++||+|||++
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE  121 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999888765445689999999999999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.78  E-value=1.4e-18  Score=175.73  Aligned_cols=110  Identities=27%  Similarity=0.358  Sum_probs=95.5

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      ++||+|+||.||+++. .+|+.||||+++...   ......+.+|+++|++++|+||++++++|...+..|||||||.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   223456889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|++++...+  .+++.+++.|+.||++||+|||++
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~  114 (323)
T cd05595          81 ELFFHLSRER--VFTEERARFYGAEIVSALEYLHSR  114 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9998887554  488999999999999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.78  E-value=4e-19  Score=190.96  Aligned_cols=126  Identities=22%  Similarity=0.344  Sum_probs=104.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCC-CEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceee-EEEe---C---C
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDG-REVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVG-YCIS---D---D  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g-~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g-~~~~---~---~  436 (492)
                      ..++.+.++|.||+|+.||++++..+ .+||+|++-..+....+.+++||++|++|+ |+|||.|+| ....   +   -
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            45567789999999999999997665 999999998777777789999999999996 999999999 3321   2   2


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH--------EDCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH--------~~~k~~ii~  491 (492)
                      +++|+||||.||.|.++|+.+....|.+.+.|+|+.|+++|+++||        +|+|..+|+
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvL  178 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVL  178 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheE
Confidence            4689999999999999998655445999999999999999999986        455555554

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.78  E-value=1.4e-18  Score=181.03  Aligned_cols=91  Identities=29%  Similarity=0.457  Sum_probs=77.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCC-CCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIH-HRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~  437 (492)
                      .++|.+.++||+|+||.||+|.+.      .+..||||+++..... ..+.|++|+++|++|+ |+|||+++|+|.+.+.
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~  115 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP  115 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence            467888899999999999999742      1346999999754332 3457999999999996 9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011175          438 RLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~  456 (492)
                      .|||||||.+|+|.++|+.
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~  134 (400)
T cd05105         116 IYIITEYCFYGDLVNYLHK  134 (400)
T ss_pred             eEEEEEecCCCcHHHHHHH
Confidence            9999999999999988864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.78  E-value=2.6e-18  Score=174.28  Aligned_cols=117  Identities=22%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.+.||+|+||.||+++.. +|..||+|+++.... ...++|.+|+++|++++|+||++++++|.+++..+||||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            367888999999999999999864 578899999875432 234579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+|+|.+++.+..  .+.+..+.+|+.||++||+|||+.
T Consensus        84 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~  122 (331)
T cd06649          84 HMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREK  122 (331)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999997644  488999999999999999999964

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.78  E-value=1.4e-18  Score=179.90  Aligned_cols=115  Identities=21%  Similarity=0.234  Sum_probs=99.4

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .|...++||+|+||.||+|+. .+++.||||+++...   ....+.+.+|+++|++++|+|||+++++|.+.+.+|||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            477889999999999999985 457889999996432   2234578899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||.+|+|.+++.+.+  .+.+.....++.||+.||+|||+.
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~al~~lH~~  120 (382)
T cd05625          82 YIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVHKM  120 (382)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999987653  478888889999999999999763

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.77  E-value=1.7e-18  Score=168.74  Aligned_cols=117  Identities=25%  Similarity=0.450  Sum_probs=103.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|++.++||+|+||.||+|.+.+++.||||+++... ...+.|.+|++++++++|+||+++++++.+.+..+|||||+.
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMA   84 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCC
Confidence            5688889999999999999998788899999986432 235689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++++.....+.+.+++.++.||++||+|||+.
T Consensus        85 ~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~  122 (261)
T cd05072          85 KGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK  122 (261)
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999765545688999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.77  E-value=1.7e-18  Score=176.61  Aligned_cols=115  Identities=22%  Similarity=0.264  Sum_probs=99.5

Q ss_pred             cCCCccceeccCCceeEEEEEcCC--CCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~--g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.++||+|+||.||+|++.+  +..||||+++...   ....+.|.+|+++|++++|+|||+++++|.+.+..|||
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            468888999999999999998543  3589999986422   23345788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+|+|++++.++.  .+++..++.|+.||+.||+|||+
T Consensus       110 ~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~  149 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQS  149 (340)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997654  38899999999999999999975

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.77  E-value=1.7e-18  Score=178.58  Aligned_cols=125  Identities=28%  Similarity=0.451  Sum_probs=104.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC---CC--EEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD---GR--EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~---g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++.+.+.++||+|.||.||+|.+.+   |+  .||||+.|.+. .++.+.|+.|..+|++++|+|||+|+|+|.+ +..
T Consensus       387 ~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~  465 (974)
T KOG4257|consen  387 RRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPM  465 (974)
T ss_pred             ehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cce
Confidence            34456667899999999999998643   33  58999998644 4456789999999999999999999999975 678


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      |||||++..|.|..||..+ +..|+....+.+++||+.+|+||      |+|+.-++|+
T Consensus       466 WivmEL~~~GELr~yLq~n-k~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiL  523 (974)
T KOG4257|consen  466 WIVMELAPLGELREYLQQN-KDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNIL  523 (974)
T ss_pred             eEEEecccchhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhee
Confidence            9999999999999999865 34689999999999999999998      5677666664

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.77  E-value=2e-18  Score=174.51  Aligned_cols=110  Identities=27%  Similarity=0.346  Sum_probs=95.6

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      ++||+|+||.||+++. .+|+.||||+++...   ......+++|+++|++++|+||++++++|...+..||||||+.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   223456889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|++++...+  .+.+.+.+.|+.||++||+|||++
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~  114 (323)
T cd05571          81 ELFFHLSRER--VFSEDRARFYGAEIVSALGYLHSC  114 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999987654  488999999999999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.77  E-value=2.2e-18  Score=167.97  Aligned_cols=116  Identities=28%  Similarity=0.471  Sum_probs=101.5

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.+.||+|+||.||+|.+.++..||||.++... ....+|.+|+++|++++|+||++++|+|.+.+..+|||||+.
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            3577788999999999999998777789999987433 335679999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++..... .+.|.++++|+.||++||+|||+.
T Consensus        83 ~~~l~~~i~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~  119 (256)
T cd05113          83 NGCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYLESK  119 (256)
T ss_pred             CCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999876433 589999999999999999999853

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.77  E-value=1.1e-18  Score=173.26  Aligned_cols=125  Identities=24%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             CCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .|++++.||+|..|.||++++.+ +..+|+|+|.+...   +.......|-+||+.++|+.|..||+.|+.+++.|||||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            45566889999999999999854 57899999975432   223456778899999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||.||||+.+++++..+.+.+..+.-+|..|+.||+|||      +|.|+.+|++
T Consensus       158 yCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILv  212 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILV  212 (459)
T ss_pred             cCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEE
Confidence            999999999999887778999999999999999999999      5888888763

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.77  E-value=3e-18  Score=172.00  Aligned_cols=116  Identities=23%  Similarity=0.259  Sum_probs=101.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.+.||+|+||.||++... +++.||+|+++..... ..++|.+|+++|++++|+||++++++|.+++..+|||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            36888899999999999999854 5778999988754332 235689999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++++.+  .+.+..++.++.||++||+|||++
T Consensus        81 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~  118 (308)
T cd06615          81 MDGGSLDQVLKKAG--RIPENILGKISIAVLRGLTYLREK  118 (308)
T ss_pred             cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999997653  488899999999999999999974

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.77  E-value=4.4e-19  Score=181.19  Aligned_cols=103  Identities=23%  Similarity=0.458  Sum_probs=91.0

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      .++.||.|+-|.||+|++ .++.||||+++..       -..+|+.|++|+|+||+.|+|+|...-.+|||||||..|.|
T Consensus       128 ELeWlGSGaQGAVF~Grl-~netVAVKKV~el-------kETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL  199 (904)
T KOG4721|consen  128 ELEWLGSGAQGAVFLGRL-HNETVAVKKVREL-------KETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQL  199 (904)
T ss_pred             hhhhhccCcccceeeeec-cCceehhHHHhhh-------hhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccH
Confidence            357899999999999999 6789999988632       23578899999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+.++  .+.-..++.+..+||.||+|||.
T Consensus       200 ~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~  230 (904)
T KOG4721|consen  200 YEVLKAGR--PITPSLLVDWSKGIAGGMNYLHL  230 (904)
T ss_pred             HHHHhccC--ccCHHHHHHHHHHhhhhhHHHHH
Confidence            99997654  47778889999999999999964

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=2e-18  Score=172.66  Aligned_cols=120  Identities=21%  Similarity=0.298  Sum_probs=106.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||.|.-+.||+|+. ..++.||||+++.+... +.+++++|+..|+.++|+||++++..|..++.+|+||-
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            35688899999999999999984 56799999999865433 35789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||.+|++++++...-...|++..+..|.+++++||+|||+++
T Consensus       105 fMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G  146 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG  146 (516)
T ss_pred             hhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998765556999999999999999999997644

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.77  E-value=2.8e-18  Score=173.97  Aligned_cols=110  Identities=29%  Similarity=0.370  Sum_probs=95.8

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      ++||+|+||.||+++. .+|+.||||+++...   ......+.+|+++|++++|+||++++++|.+.+..||||||+.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   233457899999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|++++...+  .+.+.+++.|+.||++||+|||++
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~  114 (328)
T cd05593          81 ELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHSG  114 (328)
T ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9998887543  489999999999999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=2.9e-18  Score=174.03  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=100.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.+.||+|+||.||+++.. +++.||||+++...   ....+.|.+|+.++.+++|+||++++++|.+++.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            46888999999999999999864 58899999996421   223456899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++.+.+ ..+.+..++.|+.||++||+|||+.
T Consensus        81 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~  121 (331)
T cd05597          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQL  121 (331)
T ss_pred             ecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999997532 3478889999999999999999863

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.77  E-value=5.2e-18  Score=165.92  Aligned_cols=116  Identities=23%  Similarity=0.378  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|++.+.||+|+||.||+|+. .+++.||||+++.......+.+.+|+.+|++++|+||++++++|...+..||||||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4688889999999999999985 467889999997554445567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.++++.++  .+++.+++.++.||++||+|||+.
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  125 (267)
T cd06646          89 GGGSLQDIYHVTG--PLSELQIAYVCRETLQGLAYLHSK  125 (267)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999987543  488999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=2e-18  Score=175.96  Aligned_cols=115  Identities=23%  Similarity=0.294  Sum_probs=101.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|+.. +|+.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+++..||||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            46888999999999999999864 68899999997432   233467899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++.+.  ..+.+..++.|+.||++||+|||+
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~  119 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHK  119 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999765  348899999999999999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.77  E-value=4.1e-18  Score=166.20  Aligned_cols=118  Identities=27%  Similarity=0.482  Sum_probs=104.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|.+.+.||+|+||.||+|.+.+++.||||.++... ...++|.+|+++|++++|+||++++++|...+..|+||||+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence            35678889999999999999998778889999987543 34567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.......++|.+++.|+.||++||+|||++
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  122 (261)
T cd05068          84 KYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ  122 (261)
T ss_pred             cCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999765544689999999999999999999864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.77  E-value=5e-18  Score=171.76  Aligned_cols=109  Identities=28%  Similarity=0.355  Sum_probs=95.0

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      ++||+|+||.||+++. .+|+.||||+++...   .....++.+|+++|.+++|+||++++++|.+.+..||||||+.+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   223457889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|++++...+  .+.+.+++.|+.||++||+|||+
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~  113 (325)
T cd05594          81 ELFFHLSRER--VFSEDRARFYGAEIVSALDYLHS  113 (325)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999887543  48999999999999999999995

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.76  E-value=1.1e-18  Score=168.85  Aligned_cols=123  Identities=22%  Similarity=0.293  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV  441 (492)
                      ++|+..+.|++|.||.||+|+.+ +++.||+|+++.....+  --..+|||.+|.+++|+|||.+..+...  .+.+|||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            34556688999999999999964 58899999998543221  1356899999999999999999998875  4578999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||++ ||..+|+.-. +.+...+...++.|+++||+|||+      |.|..+++
T Consensus       156 Me~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLL  209 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLL  209 (419)
T ss_pred             HHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhhee
Confidence            999976 7888887543 457788888999999999999975      55555544

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.76  E-value=5e-18  Score=165.02  Aligned_cols=116  Identities=28%  Similarity=0.501  Sum_probs=103.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|+..+.||+|+||.||+|.. .|+.||||+++.... ..++|.+|+++|++++|+||++++|++.+.+..++||||+.
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecC
Confidence            4677889999999999999987 588999999975543 46689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++.......+.|..++.++.||++||+|||++
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~  121 (256)
T cd05039          84 KGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK  121 (256)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999876555689999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.76  E-value=2.9e-18  Score=176.97  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=100.1

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..++|++.++||+|+||.||+++.. +++.||+|+++...   ....+.|.+|+++++.++|+||+++++++.+++.+||
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            3567899999999999999999864 57889999986321   2234568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||.+|+|.+++...   .+.+.+.+.|+.||+.||+|||+
T Consensus       121 v~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~  160 (370)
T cd05621         121 VMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHS  160 (370)
T ss_pred             EEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998643   37888889999999999999975

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=175.16  Aligned_cols=129  Identities=23%  Similarity=0.311  Sum_probs=104.3

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--------------cchHHHHHHHHHHHhCCCCccc
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--------------QGEREFKAEVEIISRIHHRHLV  426 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--------------~~~~~f~~Ei~il~~l~HpNIv  426 (492)
                      -.+..+.|++++.||+|.||.|-+|+. .+++.||||+|.+...              ...+++++||.||++|+|+|||
T Consensus        92 ~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV  171 (576)
T KOG0585|consen   92 DRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVV  171 (576)
T ss_pred             cceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCee
Confidence            345568899999999999999999984 4688999999953211              1124789999999999999999


Q ss_pred             ceeeEEEe--CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          427 SLVGYCIS--DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       427 ~l~g~~~~--~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +|+++..+  .+.+|||+|||..|.+.+.-.  .+..|++.+..+|++++..||+|||      +|||+.++++
T Consensus       172 ~LiEvLDDP~s~~~YlVley~s~G~v~w~p~--d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl  243 (576)
T KOG0585|consen  172 KLIEVLDDPESDKLYLVLEYCSKGEVKWCPP--DKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLL  243 (576)
T ss_pred             EEEEeecCcccCceEEEEEeccCCccccCCC--CcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEE
Confidence            99999875  568899999999998754322  2233899999999999999999995      6788877653

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.76  E-value=4.6e-18  Score=165.80  Aligned_cols=117  Identities=28%  Similarity=0.451  Sum_probs=102.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|++.++||+|+||.||+|...+++.||||+++... ...++|.+|+++|++++|+||+++++++. .+..++||||+
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcC
Confidence            45688889999999999999998888999999987433 33568999999999999999999999874 56789999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.......+++.+++.|+.||+.||+|||+.
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~  121 (260)
T cd05067          83 ENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK  121 (260)
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            999999998765555689999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.76  E-value=4.5e-18  Score=172.64  Aligned_cols=116  Identities=19%  Similarity=0.171  Sum_probs=99.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++.. +++.||||+++...   ....+.|.+|+.++.+++|+||++++++|.+.+..||||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46888999999999999999864 57889999986421   223346889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++++.+ ..+.+..++.++.||+.||+|||+
T Consensus        81 Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~  120 (331)
T cd05624          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQ  120 (331)
T ss_pred             eCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997632 247888899999999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.76  E-value=2.7e-18  Score=178.94  Aligned_cols=91  Identities=27%  Similarity=0.426  Sum_probs=77.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCC-CCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIH-HRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~  437 (492)
                      .++|.+.++||+|+||.||+|++.      .++.||||+++..... ..+.|.+|+++|.+|+ |+|||+++|+|...+.
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~  115 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP  115 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence            345677899999999999999853      2457999999754332 2357999999999997 9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011175          438 RLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~  456 (492)
                      .+||||||.+|+|+++|++
T Consensus       116 ~~iv~E~~~~g~L~~~l~~  134 (401)
T cd05107         116 IYIITEYCRYGDLVDYLHR  134 (401)
T ss_pred             cEEEEeccCCCcHHHHHHh
Confidence            9999999999999999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.76  E-value=5.4e-18  Score=165.08  Aligned_cols=119  Identities=28%  Similarity=0.467  Sum_probs=105.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|.+.++||+|+||.||++.+++++.||||+++... ...++|.+|+++|++++|+||+++++++.+.+..++||||+
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYM   83 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEecc
Confidence            46788889999999999999998778889999987433 34568999999999999999999999999989999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+++|.++++......+.+.+++.|+.||++||+|||++.
T Consensus        84 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~  123 (261)
T cd05034          84 SKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN  123 (261)
T ss_pred             CCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999998765456899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=4.2e-18  Score=171.34  Aligned_cols=107  Identities=22%  Similarity=0.330  Sum_probs=93.9

Q ss_pred             eccCCceeEEEEEcC-CCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||+++.. +++.||||+++..   .......+.+|+++|++++|+||++++++|.+.+..||||||+.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            799999999999864 5788999998643   223345788999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++..++  .+++..++.|+.||++||+|||+
T Consensus        81 ~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~  111 (312)
T cd05585          81 FHHLQREG--RFDLSRARFYTAELLCALENLHK  111 (312)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99997654  38999999999999999999976

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.76  E-value=2e-18  Score=176.34  Aligned_cols=126  Identities=23%  Similarity=0.274  Sum_probs=103.5

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..++|+++.+||+|+||+||+++. ..|+.+|+|+|++...   .+.+..+.|-+||...++++||+|+..|.+.+++||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            457899999999999999999985 4599999999986543   334568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHH------HHHHHHHHHHhhcCCCCceeeC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKI------AAGAARGLAYLHEDCKYLIFCF  492 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~i------a~qIa~gL~YLH~~~k~~ii~~  492 (492)
                      ||||+.|||+..+|.+.+.  |.+.....+      |++.++-+.|+|+|+|+.++++
T Consensus       219 iMEylPGGD~mTLL~~~~~--L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLi  274 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDT--LTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLI  274 (550)
T ss_pred             EEEecCCccHHHHHHhcCc--CchHHHHHHHHHHHHHHHHHHHcCcccccCChhheee
Confidence            9999999999999986553  555554444      4444556667889999988864

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=179.10  Aligned_cols=123  Identities=20%  Similarity=0.360  Sum_probs=107.3

Q ss_pred             cCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ..|..-++||+|+-|.||.++ ..+++.||||++.......++-+++|+.+|+.++|+|||++++.|+..+++|+|||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeec
Confidence            346666889999999999997 4578899999998776666777999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ++|+|.+.+...   .+++.++..||+++++||+|||      +|+|-.+|++
T Consensus       353 ~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL  402 (550)
T KOG0578|consen  353 EGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILL  402 (550)
T ss_pred             CCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEe
Confidence            999999888654   3899999999999999999996      5666666653

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.76  E-value=9.7e-18  Score=163.84  Aligned_cols=116  Identities=26%  Similarity=0.568  Sum_probs=100.4

Q ss_pred             CCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +|+..++||+|+||.||+|...+|+.||||+++....      ...+.|.+|+++|++++|.||++++++|.+.+..++|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            4777899999999999999987889999999864321      1124688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |||+.+|+|.+++.+.+  .+.+..+..++.||++||+|||+..
T Consensus        81 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~  122 (265)
T cd06631          81 MEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNC  122 (265)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999997643  3788888999999999999998743

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.76  E-value=5.8e-18  Score=170.69  Aligned_cols=110  Identities=25%  Similarity=0.307  Sum_probs=94.9

Q ss_pred             ceeccCCceeEEEEEc----CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          373 NLLGEGGFGSVYKGYL----PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++||+|+||.||+++.    .+|+.||||+++....  .....+.+|+++|++|+|+||++++++|.+++..||||||+.
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            6799999999999874    3578999999974322  233467889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|++++.++.  .+++..++.|+.||++||+|||+.
T Consensus        82 ~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~  117 (318)
T cd05582          82 GGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSL  117 (318)
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999997543  489999999999999999999863

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.76  E-value=3.2e-18  Score=176.53  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=99.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..++|++.++||+|+||.||+++.. +++.||||+++...   ....+.|.+|+++|++++|+||++++++|.+++..||
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            3467888999999999999999864 58899999996421   2233468899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||.+|+|.+++++.   .+.+...+.++.||++||+|||+
T Consensus       121 v~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~  160 (370)
T cd05596         121 VMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHS  160 (370)
T ss_pred             EEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988653   37788888899999999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.76  E-value=5.3e-18  Score=174.07  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=100.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|+..++||+|+||.||+++.. +++.||||+++...   ....+.+.+|+++|.+++|+||++++++|.+.+.+||||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46888899999999999999864 58899999996432   223457889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+|+|.+++.+.+  .+++...+.|+.||+.||+|||+
T Consensus        81 E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~L~~lH~  119 (360)
T cd05627          81 EFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLAIDAIHQ  119 (360)
T ss_pred             eCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997654  38899999999999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.76  E-value=9e-18  Score=166.53  Aligned_cols=116  Identities=27%  Similarity=0.386  Sum_probs=99.8

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |...++||+|+||+||+|.+ .+++.||||+++....   ...+.+.+|+++|++|+|.||+.++++|..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            56678899999999999986 4688999999864332   2234688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++...+...+++..++.++.||++||+|||+.
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~  121 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE  121 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999888765444689999999999999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.76  E-value=6.7e-18  Score=164.38  Aligned_cols=116  Identities=24%  Similarity=0.406  Sum_probs=101.0

Q ss_pred             CCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      +|.+.+.||+|+||.||+|.+.+++.+|||+++... ....+|.+|++++++++|+||+++++++.+.+..|+||||+.+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            466778999999999999998777789999986432 2345799999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ++|+++++.... .++|..++.|+.||++||+|||+++
T Consensus        84 ~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~  120 (256)
T cd05059          84 GCLLNYLRERKG-KLGTEWLLDMCSDVCEAMEYLESNG  120 (256)
T ss_pred             CCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999975432 5899999999999999999998643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.76  E-value=4.4e-18  Score=174.81  Aligned_cols=124  Identities=22%  Similarity=0.294  Sum_probs=106.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCc---chHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ---GEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~l  440 (492)
                      .+.|.+.+.||+|.||.||+++... |+.+|+|+++.....   ..+.+.+|+.||++|. |+|||.|+++|++.+.++|
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            3567888999999999999998654 999999999754332   3468999999999998 9999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      |||+|.||+|++++...   .+++.+...++.||++++.|||+      |.|+.+|+|
T Consensus       114 vmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~  168 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLL  168 (382)
T ss_pred             EEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeee
Confidence            99999999999999766   28999999999999999999964      566666554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.75  E-value=2e-18  Score=176.33  Aligned_cols=128  Identities=25%  Similarity=0.307  Sum_probs=109.4

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      ++..++|..+++||+|+|.+||+|+. ..++++|||+|.+..   .+..+-..+|-++|.+| +|+.||+|+.-|.++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            44557788999999999999999984 468999999996432   12234577899999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +|+|+||++||+|.++|++-+.  |++.....+|.+|+.||+|||      +|+|+.+|+|
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gs--fde~caR~YAAeIldAleylH~~GIIHRDlKPENILL  207 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGS--FDETCARFYAAEILDALEYLHSNGIIHRDLKPENILL  207 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeE
Confidence            9999999999999999987654  899999999999999999995      6778877765

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.75  E-value=5.4e-18  Score=171.71  Aligned_cols=116  Identities=22%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++. .+|+.||||+++...   ....+.|.+|+++|+.++|+||++++++|.+.+..||||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4688899999999999999985 468899999997432   223456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++.+.. ..+++..++.|+.||++||+|||+
T Consensus        81 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~  120 (330)
T cd05601          81 EYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQ  120 (330)
T ss_pred             CCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997642 358999999999999999999975

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.75  E-value=1.1e-17  Score=163.71  Aligned_cols=117  Identities=27%  Similarity=0.436  Sum_probs=100.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|+..+.||+|+||.||+|++..    ...||||+++..... ...+|.+|+.+|++++|+||+++++++.+.+..+||
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            467888999999999999998642    357999998754333 345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++.... ..+++.++++++.||++||+|||++
T Consensus        84 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~  125 (266)
T cd05033          84 TEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEM  125 (266)
T ss_pred             EEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999987643 2589999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.75  E-value=8e-18  Score=170.34  Aligned_cols=114  Identities=14%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             ccceeccC--CceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          371 DQNLLGEG--GFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       371 ~~~~LG~G--~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++++||+|  +||+||+++. .+|+.||||+++....  ...+.+.+|+++++.++|+||++++++|..++..|||||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            35789999  6789999986 4688999999975432  22346778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.......+++..+++|+.||++||+|||+.
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~  120 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM  120 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998754444589999999999999999999863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.75  E-value=3.1e-18  Score=175.31  Aligned_cols=110  Identities=23%  Similarity=0.310  Sum_probs=92.7

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      |+..++||+|+||.||+|++. +|+.||||++...... ..++|.+|+++|++++|+||++++++|.+++.+|||||||.
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  155 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMD  155 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCC
Confidence            344578999999999999864 6889999999654332 34579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|..+.      .+.+..++.|+.||++||+|||++
T Consensus       156 ~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~  187 (353)
T PLN00034        156 GGSLEGTH------IADEQFLADVARQILSGIAYLHRR  187 (353)
T ss_pred             CCcccccc------cCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99986432      356777888999999999999863

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.75  E-value=7.2e-18  Score=170.53  Aligned_cols=110  Identities=27%  Similarity=0.446  Sum_probs=94.1

Q ss_pred             ceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++||+|+||.||+++.    .+++.||||+++...    ......+.+|+++|++|+|+||++++++|.+++..||||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            6799999999999974    357889999997422    22335688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|++++.+.+  .+.+..++.++.||++||+|||++
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  119 (323)
T cd05584          82 LSGGELFMHLEREG--IFMEDTACFYLSEISLALEHLHQQ  119 (323)
T ss_pred             CCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999997654  377888888999999999999763

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.75  E-value=2.9e-18  Score=177.15  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=77.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      .++|++.++||+|+||.||+|++      .+++.||||+++..... ..+.|.+|+++|+++ +|+|||+++|+|.+.+.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            45688889999999999999873      12357999999754333 345689999999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011175          438 RLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~  456 (492)
                      .|||||||.+|+|.++++.
T Consensus       117 ~~lv~ey~~~g~L~~~l~~  135 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRK  135 (374)
T ss_pred             eEEeHhhccCCcHHHHHHh
Confidence            9999999999999998854

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.75  E-value=7.5e-18  Score=164.67  Aligned_cols=117  Identities=25%  Similarity=0.405  Sum_probs=102.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .+|...++||+|+||.||+|.+. +++.||+|+++.. ....++|.+|+++|++++|+||++++++|.+++..++||||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            34677889999999999999864 4788999998743 334567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.......+++..++.|+.||++||+|||++
T Consensus        85 ~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~  123 (263)
T cd05052          85 TYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK  123 (263)
T ss_pred             CCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999766555689999999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.75  E-value=8e-18  Score=164.83  Aligned_cols=122  Identities=21%  Similarity=0.277  Sum_probs=103.1

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +..++++....+||+|+||.||+|++. +++.|+||.++.......+.|.+|++++++++|+||++++|+|..++..+||
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            334556666788999999999999854 5778999998766555667899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+++|.++++.... ...++..++.++.||++||+|||+.
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  127 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN  127 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999875422 1237888889999999999999863

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=5.8e-18  Score=166.92  Aligned_cols=117  Identities=21%  Similarity=0.310  Sum_probs=103.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|++.+.||+|+||.||+|.+. +++.||+|+++.......++|.+|+++|++|+|+||++++++|.+.+..||||||+
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeecc
Confidence            45777889999999999999864 57899999997655555568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.+.+ ..+++..+++++.||++||+|||++
T Consensus        85 ~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~  122 (280)
T cd06611          85 DGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSH  122 (280)
T ss_pred             CCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999887543 3489999999999999999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.75  E-value=1.1e-17  Score=167.30  Aligned_cols=115  Identities=23%  Similarity=0.389  Sum_probs=98.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.+.||+|+||.||+|+.. +++.||||+++..... ....+.+|+++|++|+|+||+++++++.+.+..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEY   84 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEEC
Confidence            67888999999999999999964 6889999999754322 234688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |. |+|.+++.... ..+.+..+..++.||++||+|||+
T Consensus        85 ~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~  121 (303)
T cd07869          85 VH-TDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQ  121 (303)
T ss_pred             CC-cCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            95 68888876543 347888889999999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.75  E-value=1e-17  Score=165.56  Aligned_cols=118  Identities=30%  Similarity=0.456  Sum_probs=99.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.+.||+|+||.||+|.+     .+++.|+||.++.... ....+|.+|+++|++++|+||++++|++...+..||
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            4577789999999999999974     2457899999974333 333679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEG---------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~---------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+|+|.++++.+.               +..+++.+.+.|+.||++||+|||++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~  143 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH  143 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999985321               23478899999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.75  E-value=1e-17  Score=169.82  Aligned_cols=110  Identities=22%  Similarity=0.318  Sum_probs=94.8

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+++.. +++.||||+++...   ....+.+.+|+.++.++ +|+||++++++|.+.+.+|||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999999864 58899999997532   22335688999999998 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+.+..++.|+.||++||+|||+.
T Consensus        81 g~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~lH~~  115 (329)
T cd05588          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNFLHER  115 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998886553  489999999999999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.75  E-value=1.3e-17  Score=161.80  Aligned_cols=112  Identities=27%  Similarity=0.495  Sum_probs=96.6

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      +.||+|+||.||+|.+. +++.||||.++.... .....|.+|+++|++++|+||++++++|...+..+|||||+.+++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            46999999999999864 688999998864332 3345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+++...+ ..+++.+++.++.||++||+|||+++
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~  114 (252)
T cd05084          81 LTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKH  114 (252)
T ss_pred             HHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99987543 34889999999999999999998643

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.75  E-value=1.1e-17  Score=165.23  Aligned_cols=117  Identities=28%  Similarity=0.443  Sum_probs=99.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~  439 (492)
                      ++|++.++||+|+||.||++.+     .+++.||||+++.......+.|.+|+++|++++|+||++++++|...  +..+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            3577789999999999999974     24778999999765555567899999999999999999999988643  4678


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|++++.+.+ ..++|..++.++.||++||+|||++
T Consensus        84 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~  127 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSK  127 (284)
T ss_pred             EEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999997543 3489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.75  E-value=8.8e-18  Score=169.11  Aligned_cols=115  Identities=27%  Similarity=0.492  Sum_probs=97.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .+|++.+.||+|+||.||+|++. +++    .||||+++.... ...++|.+|+.+|++++|+||++++|+|... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            45888899999999999999853 333    489999975432 3456899999999999999999999999864 5789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+||+.+|+|+++++... ..+.+..+++++.||++||+|||+
T Consensus        86 v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~  127 (316)
T cd05108          86 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEE  127 (316)
T ss_pred             eeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997643 348899999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.75  E-value=1.1e-17  Score=164.14  Aligned_cols=111  Identities=26%  Similarity=0.381  Sum_probs=93.2

Q ss_pred             ceeccCCceeEEEEEcCC---CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~---g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      +.||+|+||.||+|.+.+   +..+|+|.++.... ....+|.+|+.++++++|+||++++|+|.+.+..+|||||+.+|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            359999999999998643   35789999875543 33457999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          449 TLYFHLHGEG---RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       449 sL~~~l~~~~---~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|+++|+...   ...+++..+++++.||++||+|||+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  118 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK  118 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999987532   2246778888999999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.75  E-value=1.1e-17  Score=163.87  Aligned_cols=110  Identities=25%  Similarity=0.434  Sum_probs=93.4

Q ss_pred             ceeccCCceeEEEEEcCC-------------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          373 NLLGEGGFGSVYKGYLPD-------------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-------------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      +.||+|+||.||+|++.+             ...|+||.++.........|.+|+.+|++++|+||++++|+|.+....+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            468999999999998532             2258899887544444567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||+.+|+|..+++... ..+++..+++|+.||++||+|||+
T Consensus        81 lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~  123 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLED  123 (262)
T ss_pred             EEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999988886543 348999999999999999999985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.74  E-value=1.4e-17  Score=165.41  Aligned_cols=115  Identities=22%  Similarity=0.386  Sum_probs=98.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|...++||+|+||.||+|+.. +++.||||+++.... .....+.+|+++|++|+|+||+++++++.+.+..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            56888899999999999999864 578999999975432 2345788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +. |+|.+++...+ ..+.+..++.++.||++||+|||+
T Consensus        85 ~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~  121 (288)
T cd07871          85 LD-SDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHK  121 (288)
T ss_pred             CC-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            97 58988886543 347888999999999999999976

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.74  E-value=1.2e-17  Score=164.04  Aligned_cols=118  Identities=23%  Similarity=0.430  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|++.+.||+|+||.||+|+..      +.+.|+||.+...... ..++|.+|+++|++++|+||++++++|.+.+..|
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            46778899999999999999853      2457999988654333 3467999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGR-------PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~-------~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|.++++....       ..+.+..++.++.||++||+|||++
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~  136 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA  136 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999975441       1489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.74  E-value=1.3e-17  Score=164.45  Aligned_cols=118  Identities=27%  Similarity=0.445  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|.+.++||+|+||.||+|.+.+      +..||+|.++..... .+.+|.+|+.++++++|+||+++++++.+.+..+
T Consensus         6 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRF   85 (277)
T ss_pred             HHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcE
Confidence            568888999999999999998743      457899988754333 3457999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGR-----PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~-----~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|.+++++.+.     ..++|.++++|+.||++||+|||+.
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~  135 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN  135 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999875431     2589999999999999999999874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.74  E-value=1e-17  Score=165.77  Aligned_cols=116  Identities=18%  Similarity=0.248  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.+.||+|+||.||+|+.. +++.||||+++....  ...+.+.+|+++|++++|+||++++++|.+++..|||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            46888999999999999999974 578899999975432  234578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.++.|..+....  ..+.+..++.++.||++||+|||+.
T Consensus        81 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~  119 (287)
T cd07848          81 YVEKNMLELLEEMP--NGVPPEKVRSYIYQLIKAIHWCHKN  119 (287)
T ss_pred             cCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99988776554332  3488899999999999999999853

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.74  E-value=1.3e-17  Score=169.05  Aligned_cols=115  Identities=21%  Similarity=0.287  Sum_probs=98.0

Q ss_pred             CCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      +|++.++||+|+||.||+++.    .+++.||||+++...    ....+.+.+|+++|+++ +|+||+++++++.+++.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            477889999999999999874    357889999986421    22335688999999999 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +||||||.+|+|++++..++  .+.+.+.+.|+.||++||+|||+.
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  124 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHKL  124 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999987643  488999999999999999999753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.74  E-value=1.4e-17  Score=162.91  Aligned_cols=116  Identities=28%  Similarity=0.454  Sum_probs=99.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.++||+|+||.||+|++.++..||||+++... ...++|.+|++++++++|+||+++++++. .+..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~   83 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMS   83 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCC
Confidence            4588889999999999999998676789999997532 23467999999999999999999999875 466899999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++.+.....+++.+++.++.||++||+|||+.
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~  121 (262)
T cd05071          84 KGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM  121 (262)
T ss_pred             CCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999765444689999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.74  E-value=1.1e-17  Score=164.57  Aligned_cols=118  Identities=28%  Similarity=0.528  Sum_probs=100.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|.+.++||+|+||.||+|.+.+      ++.||||+++..... ..++|.+|+++|++++|+||++++++|...+..+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            456777899999999999998533      468999999765444 3468999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEG------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|.++|+..+            ...+.+.+.+.++.||+.||+|||++
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~  141 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ  141 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999997542            23478889999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.74  E-value=1.1e-17  Score=163.63  Aligned_cols=116  Identities=23%  Similarity=0.390  Sum_probs=101.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|...++||+|+||.||+|+. .+++.||||+++.........+.+|+.++++++|+||+++++++...+..|+||||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            3566678899999999999985 458899999997655445567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++...+  .+++.+.+.++.||+.||+|||+.
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~  125 (267)
T cd06645          89 GGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLHSK  125 (267)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999987554  489999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.74  E-value=1.9e-17  Score=160.53  Aligned_cols=117  Identities=21%  Similarity=0.291  Sum_probs=102.5

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|...+.||+|+||.||+|++. +++.|++|+++...  ....++|.+|+++|++++|+||++++++|.+.+..||||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4677899999999999999864 58899999986432  33456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.++++......+++.+++.|+.||++||+|||++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~  120 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK  120 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999875445689999999999999999999863

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.74  E-value=1.6e-17  Score=161.91  Aligned_cols=117  Identities=26%  Similarity=0.431  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|++.++||+|+||.||+|.+.++..||+|+++.... ..++|.+|+++|++++|+||+++++++. .+..+|||||+.
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~   83 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMS   83 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecC
Confidence            45777899999999999999987888899999975332 3467999999999999999999999875 456899999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +|+|.+++++.....+++.++++|+.||++||+|||++.
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~  122 (260)
T cd05070          84 KGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN  122 (260)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999998654455899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.74  E-value=2.5e-18  Score=180.49  Aligned_cols=123  Identities=24%  Similarity=0.336  Sum_probs=102.7

Q ss_pred             CCccceeccCCceeEEEEE-cCCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC------eEEE
Q 011175          369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------RRLL  440 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------~~~l  440 (492)
                      |...+.||+|+||.||+|+ ...|+.||||.++... ....+.+.+|+++|++|+|+|||+++|+-++..      ...|
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            4456789999999999999 4569999999998644 334567899999999999999999999866544      3479


Q ss_pred             EEecCCCCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGE-GRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~-~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      |||||.+|||+.+|++- +...|.+...+.+..+|+.||.||      |+|+|+.+|+
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIv  152 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIV  152 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEE
Confidence            99999999999999763 234589999999999999999999      5677877765

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.74  E-value=1.2e-17  Score=169.42  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=99.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||++++. +++.||||+++...   ....+.|.+|+.++.+++|+||++++++|.+.+.+||||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            46888999999999999999864 47789999986321   222345889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|+++|++.+ ..+.+..++.|+.||+.||+|||+
T Consensus        81 ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~  120 (332)
T cd05623          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQ  120 (332)
T ss_pred             eccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997532 248888899999999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.74  E-value=1.2e-17  Score=169.02  Aligned_cols=112  Identities=31%  Similarity=0.456  Sum_probs=93.9

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHH---HhCCCCcccceeeEEEeCCeEEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEII---SRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il---~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      |.+.++||+|+||.||+|++. +|+.||||+++...   ....+.+.+|++++   ++++|+||+++++++.+.+..|||
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            566789999999999999864 58899999997432   22334567776655   567899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|..+++++   .+++.+++.|+.||++||+|||+
T Consensus        81 ~E~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~  119 (324)
T cd05589          81 MEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLGLQYLHE  119 (324)
T ss_pred             EcCCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888643   48999999999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.74  E-value=1.6e-17  Score=164.76  Aligned_cols=115  Identities=29%  Similarity=0.382  Sum_probs=99.1

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |+..++||+|+||.||++... +++.||||++......   ..+.+.+|+.+|++++|.||+.++++|.+++..||||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            566789999999999999864 5889999998643222   234578999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+|.++++......+.+.+++.++.||+.||+|||+
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~  120 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ  120 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999998876544558999999999999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.74  E-value=1.3e-17  Score=163.34  Aligned_cols=117  Identities=26%  Similarity=0.437  Sum_probs=99.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-C---CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-D---GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~---g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||.||+|++. +   +..||||.++.... ...+.|.+|+++|++++|+||+++++++.+++..|||
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            45777899999999999999853 2   33689999875432 2346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++.... ..+++.++++|+.||+.||+|||+.
T Consensus        84 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~  125 (267)
T cd05066          84 TEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDM  125 (267)
T ss_pred             EEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999997653 3479999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.74  E-value=1.4e-17  Score=161.79  Aligned_cols=108  Identities=30%  Similarity=0.518  Sum_probs=92.3

Q ss_pred             ceeccCCceeEEEEEcCCCC-----------EEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          373 NLLGEGGFGSVYKGYLPDGR-----------EVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~-----------~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++||+|+||.||+|++.+..           .|++|+++..... .+.|.+|+++|++++|+||++++|+|.. +..+||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            46999999999999975432           4788877644333 6789999999999999999999999988 788999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|+++++.... .+++..++.++.||++||+|||+
T Consensus        79 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~LH~  119 (259)
T cd05037          79 EEYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASALHYLED  119 (259)
T ss_pred             EEcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999976542 58999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.74  E-value=1.5e-17  Score=162.30  Aligned_cols=117  Identities=21%  Similarity=0.394  Sum_probs=102.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|.+.++||+|+||.||++.+.++..||||+++.. ....+.|.+|+++|++++|.||+++++++.+ +..++||||+
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~   82 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFM   82 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeC
Confidence            4678889999999999999999877788999988743 2334679999999999999999999999887 7789999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.+.....+++.+++.++.||+.||+|||+.
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~  121 (260)
T cd05073          83 AKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR  121 (260)
T ss_pred             CCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999765545689999999999999999999863

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.74  E-value=1.1e-17  Score=170.64  Aligned_cols=117  Identities=27%  Similarity=0.443  Sum_probs=96.1

Q ss_pred             cCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeC-Ce
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISD-DR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~-~~  437 (492)
                      ++|++.++||+|+||.||+|++      .+++.||||+++..... ..+.+.+|+++|.++ +|+||++++++|... +.
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            5688889999999999999973      24678999999754332 345789999999999 689999999988754 46


Q ss_pred             EEEEEecCCCCCHHHHHhcCC-----------------------------------------------------------
Q 011175          438 RLLIYDYVPNNTLYFHLHGEG-----------------------------------------------------------  458 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~-----------------------------------------------------------  458 (492)
                      ++||||||.+|+|.++++...                                                           
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  166 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence            789999999999999986431                                                           


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          459 ------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       459 ------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                            +..++|.++++|+.||++||+|||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  197 (343)
T cd05103         167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLAS  197 (343)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHHHHHHh
Confidence                  1236788889999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.74  E-value=1.6e-17  Score=168.05  Aligned_cols=115  Identities=26%  Similarity=0.303  Sum_probs=97.3

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCC-CcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~H-pNIv~l~g~~~~~~~~~lV~  442 (492)
                      +|.+.+.||+|+||.||+|+.. +++.||||+++...   ....+.+..|+++|..++| .+|+++++++.+.+.+||||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4778899999999999999864 46789999997432   2334578899999999976 56888999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++...+  .+.+.+++.++.||++||+|||+.
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~  120 (324)
T cd05587          81 EYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIGLFFLHSK  120 (324)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999987654  378999999999999999999863

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.74  E-value=2.5e-17  Score=159.94  Aligned_cols=117  Identities=18%  Similarity=0.306  Sum_probs=101.6

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..++||+|+||.||.++. .+++.|++|++....  ....++|.+|+++|++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            477789999999999998874 458889999986433  33446799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |.+|+|.+++.+.....+++.+++.++.|+++||+|||+.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA  120 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999765445689999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.74  E-value=1e-18  Score=166.68  Aligned_cols=121  Identities=22%  Similarity=0.334  Sum_probs=106.4

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      |++.++||+|+||.||++.++ .|+.||||.+-..  .+.+++++||.||.+++.++||++||.|.....+|||||||..
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGA  112 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGA  112 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCC
Confidence            556788999999999999864 5899999998653  4678999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |++.++++.++ +.|.+..+..|..+.++||+|||      +|+|--+|+|
T Consensus       113 GSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILL  162 (502)
T KOG0574|consen  113 GSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILL  162 (502)
T ss_pred             CcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEE
Confidence            99999987654 46899999999999999999985      6788777764

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.74  E-value=1.2e-17  Score=165.60  Aligned_cols=118  Identities=25%  Similarity=0.414  Sum_probs=98.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|++.++||+|+||.||+|..+      .+..||||+++.... ....+|.+|+.+|++++|+||++++++|.+.+..
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            467888999999999999999753      245799999874432 2335789999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC--------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEG--------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||+.+|+|.+++++.+        ...+.+..+++|+.||++||+|||+
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~  137 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA  137 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999996422        2335677889999999999999976

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.74  E-value=1.1e-17  Score=172.65  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=102.3

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      .++....++|.+.++||+|+||.||+++.. +++.||+|+++...   ....+.|.+|+++|+.++|+||+++++++.++
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344445678999999999999999999864 57889999986321   22335688999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +..|||||||.+|+|.+++...   .+.+..++.++.||+.||+|||+
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~  160 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS  160 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988653   37888888999999999999985

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.74  E-value=1.4e-17  Score=177.57  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=99.2

Q ss_pred             CCCccceeccCCceeEEEEEcC-C-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-D-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .|.+.++||+|+||.||++... + ++.||+|++..........+.+|+++|++++|+|||+++++|...+.+|||||||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            3788899999999999999743 3 6788999876554444567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+|+|.++|+..  .+..+++..+..|+.||++||+|||+
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~  187 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS  187 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999888642  23458888999999999999999975

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.74  E-value=2.4e-17  Score=160.83  Aligned_cols=116  Identities=27%  Similarity=0.412  Sum_probs=99.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.+.||+|+||.||+|.+.++..||||++.... ...+.|.+|+++|++++|+||+++++++. .+..++||||+.
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMG   83 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCC
Confidence            4577889999999999999998777789999886433 33467999999999999999999999875 566899999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++++.....+.|..++.|+.||++||+|||+.
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~  121 (260)
T cd05069          84 KGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM  121 (260)
T ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999765545589999999999999999999864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.74  E-value=1.8e-17  Score=163.91  Aligned_cols=116  Identities=23%  Similarity=0.309  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.++||+|+||.||+++. .+|+.||+|++..... ...++|.+|++++++++|+||++++++|...+..+|||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            4567778999999999999985 4588899998865432 3346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++.+.+  .+.+...+.++.||++||.|||+.
T Consensus        85 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~  122 (284)
T cd06620          85 MDCGSLDRIYKKGG--PIPVEILGKIAVAVVEGLTYLYNV  122 (284)
T ss_pred             CCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999887643  488999999999999999999963

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.74  E-value=1.9e-17  Score=164.51  Aligned_cols=116  Identities=22%  Similarity=0.335  Sum_probs=102.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|++.++||+|+||.||+|+.. +++.|++|++........++|.+|++++++++|+||++++++|..++..||||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            56778899999999999999864 47899999997665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+|+|..++.+.. ..+++..++.++.||++||+|||+
T Consensus        92 ~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~  128 (292)
T cd06644          92 PGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHS  128 (292)
T ss_pred             CCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999988876543 348999999999999999999986

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.74  E-value=1.9e-17  Score=165.79  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      ++|...++||+|+||.||++.+.      .+..||||+++.... ...+.|.+|+++|+++ +|+||++++++|...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            56888899999999999999741      245799999875432 2345799999999999 799999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||||+.+|+|.+++++.....+++.+++.|+.||++||+|||++
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~  160 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK  160 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999765444589999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.73  E-value=1.6e-17  Score=162.82  Aligned_cols=117  Identities=28%  Similarity=0.434  Sum_probs=99.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-C---CEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-G---REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g---~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.+.||+|+||.||+|.+.+ +   ..||||+++... ....++|.+|++++++++|+||+++++++.+++..+||
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            346778999999999999998643 3   369999997543 23346899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++.... ..+++.+++.|+.|+++||+|||+.
T Consensus        84 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~~  125 (269)
T cd05065          84 TEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSEM  125 (269)
T ss_pred             EecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999987543 3589999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.73  E-value=1.3e-17  Score=164.96  Aligned_cols=117  Identities=20%  Similarity=0.311  Sum_probs=101.2

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|++.+.||+|+||.||++++. +|+.||+|.++.... ...++|.+|+++|++++|+||++++++|...+..||||||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            5777899999999999999874 688999999875422 33467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++|..+++... ...+++..++.++.||++||+|||++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~  121 (286)
T cd06622          82 DAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE  121 (286)
T ss_pred             CCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998886532 23589999999999999999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.73  E-value=1.8e-17  Score=167.91  Aligned_cols=114  Identities=17%  Similarity=0.274  Sum_probs=95.1

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~~  439 (492)
                      +|.+.++||+|+||.||+|+. .+|+.||||+++...  ......|.+|+++|++|+|+||+++++++...+     ..|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            477889999999999999985 468899999987432  223457899999999999999999999987533     479


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||||. ++|.+++....  .+++..++.|+.||++||+|||+.
T Consensus        81 lv~e~~~-~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~  122 (338)
T cd07859          81 VVFELME-SDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHTA  122 (338)
T ss_pred             EEEecCC-CCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999995 68988886544  389999999999999999999763

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.73  E-value=3e-17  Score=160.37  Aligned_cols=118  Identities=16%  Similarity=0.310  Sum_probs=100.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|+. .+++.||||+++...   .....+|.+|+++|++++|+||+++++++.+.+..++||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            5688899999999999999985 468899999886432   223357899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++..  ..+..+++...+.++.||++||+|||++
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~  125 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR  125 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999888753  2234578889999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.73  E-value=2.9e-17  Score=160.26  Aligned_cols=118  Identities=19%  Similarity=0.341  Sum_probs=102.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|... +|+.||||.++...   ....+.|.+|+++|++++|.||++++++|.+.+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57888999999999999999975 78899999886422   223467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++.+  ..+..+.+.+++.++.||++||+|||+.
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  125 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK  125 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999998864  2234588999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.73  E-value=1.5e-17  Score=163.81  Aligned_cols=120  Identities=25%  Similarity=0.406  Sum_probs=100.1

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      ..++|++.+.||+|+||.||+|.+.      .++.||||+++.... ....+|.+|+.++++++|+||++++++|.+++.
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            3466888999999999999998752      245799999864332 234579999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC--------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEG--------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|||||+.+|+|.+++++.+        ...+++.+++.++.||++||+|||+.
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  138 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN  138 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999986532        12367888999999999999999863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.73  E-value=2.7e-17  Score=159.43  Aligned_cols=115  Identities=26%  Similarity=0.475  Sum_probs=100.1

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-----cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +|+..+.||+|+||+||+|... +++.|+||++.....     ...+.|.+|+++|++++|+||+++++++.+.+..+||
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3667789999999999999875 688999999865332     2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+++|.+++.+..  .+++..++.++.||++||+|||+.
T Consensus        81 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~  121 (258)
T cd06632          81 LELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDR  121 (258)
T ss_pred             EEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999997653  378999999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.73  E-value=2e-17  Score=167.07  Aligned_cols=110  Identities=26%  Similarity=0.345  Sum_probs=93.9

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+..|+++|..+ +|+||++++++|.+.+..||||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46999999999999864 47899999997432   23345688899999876 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|..++...+  .+++..++.|+.||++||+|||++
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~  115 (321)
T cd05591          81 GDLMFQIQRSR--KFDEPRSRFYAAEVTLALMFLHRH  115 (321)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998887654  388999999999999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.73  E-value=3e-17  Score=159.40  Aligned_cols=117  Identities=19%  Similarity=0.330  Sum_probs=101.7

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|++.++||+|+||.||+++. .+|+.||||+++...  ....+++.+|++++++++|+||+++++++.+.+..+|||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            477889999999999999985 468899999986432  23345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.++++......+.+.++++|+.||++||+|||++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR  120 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998765444578999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.73  E-value=2e-17  Score=182.95  Aligned_cols=117  Identities=24%  Similarity=0.294  Sum_probs=102.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|++. +++.||||+++....   ...+.|.+|+++|+.++|+||+++++++...+.+|||
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            367888999999999999999964 588999999975332   2235789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||.+|+|.++|+..+  .+++...++|+.||++||+|||++
T Consensus        83 mEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yLH~~  123 (669)
T cd05610          83 MEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYLHRH  123 (669)
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999997543  478899999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.73  E-value=1.5e-17  Score=164.29  Aligned_cols=117  Identities=23%  Similarity=0.344  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|+..++||+|+||.||+|++. +++.||||++......  ..+.|.+|+++|++++|+||++++++|.+++..|||||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            36788899999999999999975 4889999998643322  24578899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |+.+++|.++++...  .++|.+++.|+.||++||+|||+.+
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~  120 (286)
T cd07846          81 FVDHTVLDDLEKYPN--GLDESRVRKYLFQILRGIEFCHSHN  120 (286)
T ss_pred             cCCccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999988775443  3899999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.73  E-value=2.4e-17  Score=161.50  Aligned_cols=111  Identities=24%  Similarity=0.396  Sum_probs=92.3

Q ss_pred             eeccCCceeEEEEEcCC---CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          374 LLGEGGFGSVYKGYLPD---GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~---g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      .||+|+||.||+|.+.+   ...|+||.++.... ...+.|.+|++++++++|+||++++|+|.+.+..||||||+.+|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            59999999999997533   34688888764432 234578999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          450 LYFHLHGEG---RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       450 L~~~l~~~~---~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |.++|....   ...+++...++|+.||++||+|||+.
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  119 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA  119 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            999997543   22356788889999999999999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.73  E-value=3.7e-17  Score=158.20  Aligned_cols=111  Identities=33%  Similarity=0.517  Sum_probs=97.2

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      ++||+|+||.||+|.+.+++.||+|+++..... ....|.+|+++|++++|+||++++++|...+..+|||||+.+|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            469999999999999878889999998754332 2347999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       452 ~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++.... ..+++..++.++.||++||.|||++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  112 (250)
T cd05085          81 SFLRKKK-DELKTKQLVKFALDAAAGMAYLESK  112 (250)
T ss_pred             HHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9987543 3479999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=3.2e-17  Score=164.78  Aligned_cols=118  Identities=26%  Similarity=0.321  Sum_probs=102.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|+..++||+|+||.||+|... +++.||||++......   ..+.|.+|+++|++++|+||+++++++.+.+..||||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36788899999999999999864 4889999999754322   3457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+++|++++.......+++..++.++.||++||+|||+.
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  122 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL  122 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999998765445689999999999999999999764

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.73  E-value=2.2e-17  Score=166.97  Aligned_cols=110  Identities=27%  Similarity=0.409  Sum_probs=91.7

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHH-HHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||+||+++. .+|+.||||+++...   ....+++.+|+. +++.++|+||++++++|...+..||||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999999985 468899999996431   223345666665 56779999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|++++...+  .+.+.+++.|+.||++||+|||+.
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~  115 (325)
T cd05604          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSI  115 (325)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998887544  488999999999999999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.73  E-value=4.9e-17  Score=157.94  Aligned_cols=117  Identities=15%  Similarity=0.282  Sum_probs=101.4

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|++.++||+|+||.||++... +++.||+|.++... ....+++.+|++++++++|+||+++++++.+.+..||||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4777899999999999999853 58899999986433 234467899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.......+++...++++.||++||+|||++
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  119 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK  119 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            999999988765445588999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.73  E-value=3e-17  Score=166.57  Aligned_cols=110  Identities=24%  Similarity=0.336  Sum_probs=93.9

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+++.. +++.||||+++...   ....+.+.+|+.++.++ +|+||++++++|.+.+..|||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 57889999997432   22345688899998877 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+.+..++.|+.||++||+|||++
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~  115 (329)
T cd05618          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHER  115 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998886554  488999999999999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.73  E-value=2.6e-17  Score=163.23  Aligned_cols=118  Identities=28%  Similarity=0.530  Sum_probs=101.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.+.||+|+||.||++...      ++..||||.++.......++|.+|+++|++++|+||++++++|.+.+..+|
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            56788899999999999999742      245689999876554555689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEG-----------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~-----------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+|+|.++++..+           ...+.+.+++.|+.||+.||+|||+.
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~  139 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ  139 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999986432           23489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.73  E-value=2.2e-17  Score=165.44  Aligned_cols=119  Identities=28%  Similarity=0.424  Sum_probs=100.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.+.||+|+||.||++++.        ++..||+|+++... ....++|.+|+++++++ +|+||++++++|.+.
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            356888999999999999999742        23469999997543 23345789999999999 799999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..||||||+.+|+|.++++...              ...+.|.++++|+.||++||+|||++
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~  159 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK  159 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999997532              12488999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.73  E-value=3e-17  Score=162.08  Aligned_cols=109  Identities=26%  Similarity=0.359  Sum_probs=94.0

Q ss_pred             eccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||+++.. +|+.||+|++.....   ...+.+..|+++|++++|+||++++++|.+++..||||||+.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            799999999999864 588999999864321   2234567799999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .++++......+++..++.++.||+.||+|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  113 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHS  113 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            988876555568999999999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.73  E-value=2.3e-17  Score=163.12  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=93.3

Q ss_pred             eccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||+||+++. .+|+.||||++.....   ...+.|..|+++|++++|+||++++++|...+..|||||||.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            79999999999985 4688999999864322   2235678999999999999999999999999999999999999999


Q ss_pred             HHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++...  ....+++..++.|+.||++||+|||+.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  116 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR  116 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            8887542  234589999999999999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.73  E-value=2.6e-17  Score=163.74  Aligned_cols=115  Identities=25%  Similarity=0.401  Sum_probs=99.6

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-----chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-----GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-----~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +|+..++||+|+||.||+|... +|+.||||+++.....     ....+.+|++++++++|+||++++++|.+.+..+||
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            3677889999999999999864 5889999999754332     234678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+ +|+|.+++++.. ..+++..+++|+.||++||+|||++
T Consensus        81 ~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~  121 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSN  121 (298)
T ss_pred             Eccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999 999999997654 3589999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.73  E-value=1.8e-17  Score=165.02  Aligned_cols=118  Identities=29%  Similarity=0.438  Sum_probs=98.2

Q ss_pred             cCCCccceeccCCceeEEEEEcCC---------------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceee
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD---------------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVG  430 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~---------------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g  430 (492)
                      ++|.+.+.||+|+||.||+++..+               ...||||+++..... ..++|.+|+++|++++|+||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            468888999999999999987532               225899999754332 3457999999999999999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          431 YCISDDRRLLIYDYVPNNTLYFHLHGEG----------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       431 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~----------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|...+..+|||||+.+++|.+++....          ...+.|.++++|+.||++||+|||+.
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~  148 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL  148 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999986432          12368889999999999999999763

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.73  E-value=1.5e-17  Score=185.74  Aligned_cols=122  Identities=15%  Similarity=0.250  Sum_probs=101.9

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRR  438 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~  438 (492)
                      ...++|.++++||+|+||.||+++.. .++.||+|+++....  .....|.+|+.+|++|+|+|||+|+++|.+  .+.+
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34578999999999999999999864 467899999875432  234579999999999999999999998865  3568


Q ss_pred             EEEEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          439 LLIYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |||||||.+|+|.++|...  ....|++..++.|+.||+.||+|||+.+
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g  138 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLK  138 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999998642  2235899999999999999999999743

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.73  E-value=1.4e-17  Score=172.72  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=103.3

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .....|.+.+.||+|.|+.|.+++. ..+.+||||.+++...  ...+.+.+|+++|+.|+|+|||+|+.+.+....+||
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            3456789999999999999999985 3589999999975433  233569999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+|+|++||.++++  +.+.....++.|+.++++|||++
T Consensus       133 V~eya~~ge~~~yl~~~gr--~~e~~ar~~F~q~vsaveYcH~k  174 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHGR--MKEKEARAKFRQIVSAVEYCHSK  174 (596)
T ss_pred             EEEeccCchhHHHHHhccc--chhhhhhhhhHHHHHHHHHHhhc
Confidence            9999999999999988776  45577778899999999999864

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.73  E-value=2.5e-17  Score=160.94  Aligned_cols=115  Identities=23%  Similarity=0.436  Sum_probs=99.7

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      +|+..++||+|+||.||+|.. .+++.||||+++....      ...++|.+|+++|++|+|+||++++++|.+.+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            467789999999999999984 5688999999964321      123579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+++|.+++.+.+  .+++...+.|+.||++||+|||+.
T Consensus        81 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~~  122 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHEN  122 (268)
T ss_pred             EEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999987543  478999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.73  E-value=2.9e-17  Score=161.08  Aligned_cols=115  Identities=23%  Similarity=0.453  Sum_probs=98.4

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---c-------chHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---Q-------GEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~-------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      +|...+.||+|+||.||+|.. .+|+.||||+++....   .       ..+.|.+|+++|++++|+||++++|+|...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            466778999999999999985 4688999998863211   1       1246889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..++||||+.+|+|.+++++.+  .+++..++.|+.||++||+|||++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~  127 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEGLAYLHSK  127 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999997653  488999999999999999999974

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.73  E-value=2.5e-17  Score=161.36  Aligned_cols=118  Identities=27%  Similarity=0.448  Sum_probs=100.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeC------Ce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISD------DR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~------~~  437 (492)
                      .+.|...+.||+|+||+||+|++. +++.||||+++... ....++.+|+.+|+++ +|+||++++|+|...      +.
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcE
Confidence            455777788999999999999864 57889999987543 3456789999999998 799999999999763      45


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .||||||+.+|+|.+++.......+.|..++.++.||++||+|||++
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~  130 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH  130 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            78999999999999999865545689999999999999999999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.73  E-value=3.3e-17  Score=162.69  Aligned_cols=115  Identities=30%  Similarity=0.396  Sum_probs=100.8

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||++++. +++.||||+++...   ....+.+.+|+++|++++|+||+++++++.+.+..|+||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            46888899999999999999864 58899999986432   223457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++...+  .+.+..++.++.||++||+|||+
T Consensus        81 e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~l~~lH~  119 (290)
T cd05580          81 EYVPGGELFSHLRKSG--RFPEPVARFYAAQVVLALEYLHS  119 (290)
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997654  48899999999999999999986

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.73  E-value=3.2e-17  Score=170.40  Aligned_cols=109  Identities=22%  Similarity=0.281  Sum_probs=95.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|++.++||+|+||.||+++. ..++.||||+.+      ...+.+|+++|++|+|+|||+++++|...+..+|||||
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            46799999999999999999985 468899999754      24578999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +. ++|+.++...+  .+.+.+++.|+.||++||+|||+
T Consensus       165 ~~-~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~ylH~  200 (391)
T PHA03212        165 YK-TDLYCYLAAKR--NIAICDILAIERSVLRAIQYLHE  200 (391)
T ss_pred             CC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            95 78988886543  48899999999999999999975

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.73  E-value=3.2e-17  Score=165.42  Aligned_cols=110  Identities=25%  Similarity=0.374  Sum_probs=93.0

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHh-CCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISR-IHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~-l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|++. +++.||||+++...   ....+.+..|++++.. ++|+||+++++++.+.+.+||||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 47889999997432   2334567778888876 4999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++....  .+++.+++.|+.||++||+|||++
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~LH~~  115 (316)
T cd05619          81 GDLMFHIQSCH--KFDLPRATFYAAEIICGLQFLHSK  115 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999987543  488999999999999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.73  E-value=2.6e-17  Score=166.11  Aligned_cols=109  Identities=28%  Similarity=0.419  Sum_probs=90.3

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHH-HHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|+.. +|+.||||+++...   ....+++.+|+. +++.++|+||++++++|.+.+..|||||||.+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 58899999986432   222345556654 67889999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|++++.++.  .+.+.+...|+.||++||+|||+
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~  114 (321)
T cd05603          81 GELFFHLQRER--CFLEPRARFYAAEVASAIGYLHS  114 (321)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99998886543  37788888899999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.73  E-value=4.3e-17  Score=158.56  Aligned_cols=115  Identities=21%  Similarity=0.323  Sum_probs=102.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.++||+|+||.||++... +++.|+||+++.... ...++|.+|++++.+++|+||++++++|...+..+|||||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            36778899999999999999875 488999999976544 3456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+++|.+++...  ..+++..+++++.||++||+|||+
T Consensus        81 ~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~  117 (264)
T cd06623          81 MDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHT  117 (264)
T ss_pred             cCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999765  348999999999999999999998

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.73  E-value=5.5e-18  Score=151.06  Aligned_cols=114  Identities=20%  Similarity=0.346  Sum_probs=94.7

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcch--HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~--~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..++||||.||+||+|+. ..++.||+|+++.++.++.  ...++||.+|++|+|.|||+|+++...++.+-||+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            355568899999999999984 4578899999986544332  4688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |. .+|..|+..-+ ..++-.....++.|+++||.|+|+
T Consensus        83 cd-qdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchs  119 (292)
T KOG0662|consen   83 CD-QDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHS  119 (292)
T ss_pred             hh-HHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhh
Confidence            95 56877775432 348888889999999999999754

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.73  E-value=4.2e-17  Score=162.78  Aligned_cols=115  Identities=18%  Similarity=0.349  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|...+.||+|+||.||+|+. .+++.||||.+........+.|.+|+.+|++++|+||++++++|..++..|+||||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            5688889999999999999985 568999999997655555677999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.+.   .+.+.++++++.|+++||+|||+.
T Consensus        99 ~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~  134 (297)
T cd06656          99 AGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSN  134 (297)
T ss_pred             CCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998643   378899999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.73  E-value=2.6e-17  Score=166.23  Aligned_cols=110  Identities=29%  Similarity=0.399  Sum_probs=94.0

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+.+|+++|.++ +|+||+++++++.+.+..|||||||.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 57899999986432   23345688899998876 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+++..++.|+.||++||+|||+.
T Consensus        81 g~L~~~i~~~~--~l~~~~~~~~~~ql~~~L~~lH~~  115 (320)
T cd05590          81 GDLMFHIQKSR--RFDEARARFYAAEITSALMFLHDK  115 (320)
T ss_pred             chHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999887654  388999999999999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.73  E-value=3.2e-17  Score=161.80  Aligned_cols=116  Identities=19%  Similarity=0.367  Sum_probs=100.4

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..+.||+|+||.||+|+.. +|+.||||+++....  ...+.|.+|+++|++++|+||++++++|++++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4778899999999999999864 688999999875432  2235799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. ++|..+++......+++.+++.++.||++||+|||+.
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  119 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH  119 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            95 6899888765555689999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.73  E-value=9.9e-18  Score=163.47  Aligned_cols=110  Identities=25%  Similarity=0.456  Sum_probs=94.2

Q ss_pred             ceeccCCceeEEEEEcCC--------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.||+|+||.||+|...+        ...|++|++........++|.+|+.+|++++|+||++++++|..++..+|||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            469999999999998532        234888888654444456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+|.++++.++. .+++..++.++.||++||+|||+
T Consensus        81 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~  118 (258)
T cd05078          81 VKFGSLDTYLKKNKN-LINISWKLEVAKQLAWALHFLED  118 (258)
T ss_pred             CCCCcHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999976543 58999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.73  E-value=3.3e-17  Score=158.90  Aligned_cols=117  Identities=17%  Similarity=0.342  Sum_probs=102.2

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|...+.||+|+||.||+|... +|..||+|.+....  ..+.+.+.+|++++++++|+||++++++|.+.+..+|||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4777899999999999999864 57889999986532  23445789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++.+.....+++..++.|+.||++||+|||++
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR  120 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999765555689999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.73  E-value=3e-17  Score=166.02  Aligned_cols=115  Identities=25%  Similarity=0.299  Sum_probs=96.8

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +|...++||+|+||.||+++. .+|+.||||+++...   ....+.+.+|++++..++ |.+|+++++++.+.+.+||||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            366778999999999999985 468899999997432   233456888999998885 577888999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++...+  .+.+.+++.|+.||++||+|||+.
T Consensus        81 Ey~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~  120 (323)
T cd05615          81 EYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVGLFFLHRR  120 (323)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999987654  389999999999999999999863

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.73  E-value=3.6e-17  Score=165.34  Aligned_cols=110  Identities=29%  Similarity=0.440  Sum_probs=91.5

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHH-HHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||+||+|+.. +|+.||||++....   ....+++.+|.. ++++++|+||++++++|.+.+..||||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999864 68899999996432   222345555555 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|++++.+++  .+.+..++.|+.||++||+|||++
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  115 (323)
T cd05575          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSL  115 (323)
T ss_pred             CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987654  488889999999999999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.72  E-value=5e-17  Score=158.28  Aligned_cols=116  Identities=25%  Similarity=0.408  Sum_probs=102.1

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|++.+.||+|+||.||+|.. .+++.|+||.++.....  ..++|.+|+++|++++|.||+++++++.+.+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            477789999999999999985 46889999999765443  456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +.+++|.++++...  .+.+..+..|+.||++||+|||+++
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~  119 (264)
T cd06626          81 CSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHSHG  119 (264)
T ss_pred             CCCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999997643  3788899999999999999998743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.72  E-value=2.3e-17  Score=163.75  Aligned_cols=119  Identities=26%  Similarity=0.427  Sum_probs=100.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ..++|+..+.||+|+||.||++.+.+      ...||||+++.... ....+|.+|+++|+++ +|+||++++++|.+++
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            34567888999999999999998632      35789999875432 3345799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC--------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGE--------------GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..+|||||+.+|+|..+++..              ....+++..+++|+.||+.||+|||+
T Consensus        90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~  150 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS  150 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998642              23458899999999999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.72  E-value=3.9e-17  Score=161.13  Aligned_cols=118  Identities=32%  Similarity=0.549  Sum_probs=99.3

Q ss_pred             cCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|++.+.||+|+||.||+|.+..      ++.||||+++..... ..++|.+|+++|++++|+||++++++|.+.+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            357778999999999999998532      257999999754332 3457999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCC--------------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGR--------------PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +||||+.+|+|.++|.....              ..+++...+.++.||++||+|||++
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~  143 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH  143 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999875321              3578899999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.72  E-value=5e-17  Score=162.19  Aligned_cols=115  Identities=17%  Similarity=0.350  Sum_probs=102.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .+|...+.||+|+||.||+|+. .+++.||||.+........+.|.+|++++++++|+||++++++|...+..||||||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            4677889999999999999985 468899999998655555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++++.   .+++.+++.|+.||++||+|||+.
T Consensus       100 ~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~  135 (296)
T cd06654         100 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN  135 (296)
T ss_pred             CCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998643   378999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.72  E-value=2.9e-17  Score=160.47  Aligned_cols=118  Identities=18%  Similarity=0.304  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.+.||+|+||.||+++. .+++.||||.++....   ....+|.+|+++|++++|+||++++++|.+++..++||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4677789999999999999985 4788999998864322   23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+++|.+++..  ..+..+.+.+++.|+.||++||+|||++
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~  125 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR  125 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999998863  2234589999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.72  E-value=3.7e-17  Score=165.25  Aligned_cols=114  Identities=25%  Similarity=0.292  Sum_probs=96.6

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +|.+.++||+|+||.||+|+.. +++.||||+++...   ....+.+..|++++..+ +|+||++++++|.+.+.+||||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4778899999999999999864 57789999997432   22334577888888887 5899999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++...+  .+++.+++.|+.||++||+|||+
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~  119 (323)
T cd05616          81 EYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIGLFFLHS  119 (323)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887654  38899999999999999999986

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.72  E-value=5.8e-17  Score=157.06  Aligned_cols=117  Identities=19%  Similarity=0.304  Sum_probs=102.3

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|...+.||+|+||.||++.. .+++.||||++....  ....+.|.+|+++|++++|+||+++++++..++..+|||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            477889999999999999985 467889999986542  23346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++.......+++..+++++.||++||+|||++
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~  120 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK  120 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999875555689999999999999999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.72  E-value=2.6e-17  Score=161.48  Aligned_cols=123  Identities=23%  Similarity=0.350  Sum_probs=100.4

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCc-ccceeeEEEeCC------e
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRH-LVSLVGYCISDD------R  437 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpN-Iv~l~g~~~~~~------~  437 (492)
                      .|+..++||+|.||.||+|+. .+|+.||+|+++.....  --..-++|+.+|++|+|.| ||+|++++...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            345557799999999999984 56899999999865432  1245689999999999999 999999999887      7


Q ss_pred             EEEEEecCCCCCHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGR--PVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~--~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ++|||||++ .||..++....+  ..++.....+++.||++||+|||      +|.|+-||+
T Consensus        92 l~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlL  152 (323)
T KOG0594|consen   92 LYLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLL  152 (323)
T ss_pred             EEEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEE
Confidence            899999994 589999876543  35777788899999999999985      566776665

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.72  E-value=3.7e-17  Score=164.98  Aligned_cols=109  Identities=28%  Similarity=0.407  Sum_probs=94.1

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||++++. +++.||||+++...   ....+.+.+|+++|..+ +|+||++++++|.+.+.+||||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 47889999997432   23345678899999888 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|.+++.+.+  .+++.+++.|+.||++||+|||+
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~  114 (318)
T cd05570          81 GDLMFHIQRSG--RFDEPRARFYAAEIVLGLQFLHE  114 (318)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99998887654  48999999999999999999985

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.72  E-value=3.6e-17  Score=164.91  Aligned_cols=110  Identities=26%  Similarity=0.377  Sum_probs=91.7

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHh-CCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISR-IHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~-l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|++. +++.||||+++...   ....+.+..|++++.. ++|+||+++++++...+..||||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 57889999997432   2233456677777765 4899999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+++.+...|+.||++||+|||++
T Consensus        81 g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~~  115 (316)
T cd05592          81 GDLMFHIQSSG--RFDEARARFYAAEIICGLQFLHKK  115 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987654  388889999999999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.72  E-value=3.7e-17  Score=162.85  Aligned_cols=118  Identities=26%  Similarity=0.423  Sum_probs=98.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-----------------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccce
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-----------------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-----------------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      ++|++.++||+|+||.||++++.                 ++..||||+++.... ....+|.+|+++|++|+|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            46888899999999999998532                 234689999975433 234679999999999999999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCCC---------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGR---------PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~---------~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++++...+..+|||||+.+|+|.++++....         ..+++.++++|+.||++||+|||+.
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  149 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL  149 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999875321         2477889999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.72  E-value=4e-17  Score=163.39  Aligned_cols=117  Identities=31%  Similarity=0.573  Sum_probs=98.2

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC--EEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR--EVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~--~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||.||+|++. ++.  .+++|.++.... ...++|.+|+++|.++ +|+||++++++|.+++..|||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            56788899999999999999864 344  467887764332 3345799999999999 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++++.+              ...+++.+++.|+.||++||+|||+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~  142 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ  142 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999997532              2357899999999999999999986

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.72  E-value=5.8e-17  Score=158.43  Aligned_cols=116  Identities=24%  Similarity=0.440  Sum_probs=97.3

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-----cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~  438 (492)
                      ++|.+.++||+|+||.||+|+. .+|+.||||+++....     ...+.|.+|+++|++|+|+||+++++++.+.  +.+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4688889999999999999986 4588999998863221     1235788999999999999999999988763  467


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++||||+.+|+|++++.+..  .+++...++++.||++||+|||+.
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~  125 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSN  125 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999987543  378888999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.72  E-value=5.4e-17  Score=160.11  Aligned_cols=116  Identities=19%  Similarity=0.288  Sum_probs=99.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|+..++||+|+||.||+|++. +|+.||+|++.....  ...+.|.+|++++++++|+||++++++|...+..+||||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            46788899999999999999865 588999999864332  233568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.++.|..++....  .+++.+++.++.||++||+|||+.
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~ql~~~l~~LH~~  119 (286)
T cd07847          81 YCDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHKH  119 (286)
T ss_pred             ccCccHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999998887765433  489999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-18  Score=170.99  Aligned_cols=123  Identities=27%  Similarity=0.411  Sum_probs=101.6

Q ss_pred             cCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcc-------hHHHHHHHHHHHhCCCCcccceeeEEE-eCCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG-------EREFKAEVEIISRIHHRHLVSLVGYCI-SDDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~-------~~~f~~Ei~il~~l~HpNIv~l~g~~~-~~~~  437 (492)
                      ++|.++.+||+|+|.+||++. +.+.+.||||+-..+..+.       .+...+|.+|.+.|+|+.||++|+||. +.+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            346778899999999999998 5678899999875433221       124568999999999999999999986 5667


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeeC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIFCF  492 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii~~  492 (492)
                      +|-|+|||+|.||..||...+  .+++..+..|++||..||.||. +++..||||
T Consensus       543 FCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLN-EikpPIIHY  594 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLN-EIKPPIIHY  594 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHh-ccCCCeeee
Confidence            889999999999999997553  5899999999999999999995 467777776

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.72  E-value=1.1e-17  Score=170.53  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=102.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-EEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-RLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-~~lV~  442 (492)
                      ++|..+++||+|+||.+|+.+.+ ++..|++|+++....  ...+...+|++++++++|+|||.+++.|++++. ++|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            56778899999999999988753 577899999975543  334578899999999999999999999999888 89999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+||||.+.|.+.++..+.+.+.++++.||+.|++|||+
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~  124 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE  124 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999987766779999999999999999999983

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.72  E-value=5.9e-17  Score=162.47  Aligned_cols=116  Identities=22%  Similarity=0.391  Sum_probs=98.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|.+.++||+|+||.||+|+.. +++.||||+++.... .....+.+|+++|++++|+||++++++|..++..+|||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            56888899999999999999864 577899999975432 2335688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+ +|.+++...+ ..+++..++.++.||++||+|||++
T Consensus        86 ~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~  123 (309)
T cd07872          86 LDK-DLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRR  123 (309)
T ss_pred             CCC-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            975 7888876543 3478899999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.72  E-value=7.8e-17  Score=157.48  Aligned_cols=114  Identities=25%  Similarity=0.479  Sum_probs=97.9

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      |.+.+.||+|+||.||+|.. .+++.||||+++.....         ..+.|.+|+++|++++|+||++++|++.+.+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            66778999999999999985 45789999988643221         124688999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++||||+.+++|.+++...+  .+++..++.|+.||++||+|||++
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lH~~  125 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHNR  125 (267)
T ss_pred             EEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999997543  478889999999999999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.72  E-value=4.5e-17  Score=159.35  Aligned_cols=117  Identities=28%  Similarity=0.473  Sum_probs=100.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CC---CEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DG---REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g---~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|+..++||+|+||.||+|++. ++   ..||||+++... ....++|.+|++++++++|+||+++++++.+.+..|||
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEE
Confidence            45777899999999999999864 23   368999987543 23346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++++.. ..+++.+++.|+.|+++||+|||+.
T Consensus        85 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~  126 (268)
T cd05063          85 TEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDM  126 (268)
T ss_pred             EEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999987543 3489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.72  E-value=3.7e-17  Score=160.99  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=102.6

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeE
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      ..++....+++....++-||.||+||+|.|.+      .+.|-||.++..... ....|+.|..+|..+.|+||..++|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            34566666778888999999999999997643      345778988765443 33579999999999999999999999


Q ss_pred             EEeCC-eEEEEEecCCCCCHHHHHhc------CCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          432 CISDD-RRLLIYDYVPNNTLYFHLHG------EGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       432 ~~~~~-~~~lV~Ey~~~GsL~~~l~~------~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |.++. .-+++|.|+.-|+|+.+|..      +..+.+...+.+.||.||+.||+|||++.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~  416 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG  416 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            98765 44788899999999999872      22456788899999999999999999753

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.72  E-value=4.3e-17  Score=164.40  Aligned_cols=110  Identities=24%  Similarity=0.382  Sum_probs=92.9

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|++. +|+.||||+++...   ....+.+..|+++|.++ +|+||+++++++.+.+..||||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999864 57899999997432   22345677788888764 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++..+.  .+++.+++.++.||++||+|||++
T Consensus        81 g~L~~~i~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  115 (316)
T cd05620          81 GDLMFHIQDKG--RFDLYRATFYAAEIVCGLQFLHSK  115 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987653  388999999999999999999853

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.72  E-value=4.4e-17  Score=161.86  Aligned_cols=118  Identities=28%  Similarity=0.501  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.+.||+|+||.||+|++.      ++..|++|.++.......+.|.+|++++++++|+||++++++|...+..+|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            35777899999999999999742      345689999876555555689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+|+|.++++...              ...++|..++.|+.||++||+|||++
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~  142 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ  142 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999986532              23488999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.72  E-value=7.7e-17  Score=156.51  Aligned_cols=116  Identities=26%  Similarity=0.493  Sum_probs=101.0

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      .+|+..+.||+|+||.||++.+.+++.+|||+++... ....+|.+|++++++++|+||+++++++...+..++||||+.
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence            3567789999999999999998778899999987432 234679999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.++++... ..+.+..++.++.||++||+|||+.
T Consensus        83 ~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~  119 (256)
T cd05112          83 HGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESS  119 (256)
T ss_pred             CCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999987543 2478999999999999999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.72  E-value=5.1e-17  Score=164.67  Aligned_cols=110  Identities=23%  Similarity=0.308  Sum_probs=94.4

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|+. .+++.||||+++...   ....+.+.+|+.++.++ +|+||++++++|.+.+.+|||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999986 457889999997532   22345688999999988 699999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+.+..++.|+.||++||+|||+.
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~~  115 (327)
T cd05617          81 GDLMFHMQRQR--KLPEEHARFYAAEICIALNFLHER  115 (327)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998886543  489999999999999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.72  E-value=3.1e-17  Score=159.65  Aligned_cols=115  Identities=21%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +|++.++||+|+||.||+|... +++.||+|++.....   ...+.|.+|++++++++|+||++++++|.+.+..|+|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4778899999999999999875 588999999964332   335689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+++|.+++...  ..+++..++.|+.||++||+|||+.
T Consensus        81 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~  119 (258)
T cd05578          81 LLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSK  119 (258)
T ss_pred             CCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999998765  3488999999999999999999974

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.72  E-value=3.9e-17  Score=160.28  Aligned_cols=111  Identities=23%  Similarity=0.366  Sum_probs=91.2

Q ss_pred             eeccCCceeEEEEEcCCCC---EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          374 LLGEGGFGSVYKGYLPDGR---EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~g~---~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      .||+|+||.||+|++.++.   .+++|.++.... ...+.|.+|++++++++|+||++++|+|.+....||||||+.+|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            5999999999999754433   456777664432 334689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          450 LYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       450 L~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |++++++..  ...+.+...+.++.||++||+|||+.
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  118 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH  118 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            999997542  23466777789999999999999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=7.2e-18  Score=157.36  Aligned_cols=127  Identities=24%  Similarity=0.291  Sum_probs=110.7

Q ss_pred             hcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-----EE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----RL  439 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-----~~  439 (492)
                      .++|.+.+.||+|+|..||+++ +.+++.+|+|++.....++.+..++||+..++++|+||+++++++..+..     .|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            3568889999999999999998 66889999999988776777889999999999999999999998875443     89


Q ss_pred             EEEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCceeeC
Q 011175          440 LIYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLH--------EDCKYLIFCF  492 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH--------~~~k~~ii~~  492 (492)
                      ||+.|...|+|.+++...  ++..+++.+.++|+.+|++||+|||        +|+|+.+|||
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILl  162 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILL  162 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEe
Confidence            999999999999988643  3447999999999999999999875        6778888886

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.72  E-value=3.8e-17  Score=161.09  Aligned_cols=119  Identities=25%  Similarity=0.411  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-----CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~  438 (492)
                      .++|++.++||+|+||.||+|.+.+     ++.|++|+++.... ...+.|.+|+++|++|+|+||++++|+|.. .+..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4568888999999999999999755     67899999875432 334679999999999999999999999886 4678


Q ss_pred             EEEEecCCCCCHHHHHhcCCC------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGR------PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~------~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++++||+.+|+|.++|.....      ..+.+.+++.|+.||++||+|||++
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~  136 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR  136 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            899999999999999865321      4589999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.72  E-value=4.8e-17  Score=159.81  Aligned_cols=118  Identities=25%  Similarity=0.387  Sum_probs=100.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|.+.+.||+|+||.||+|.+.+      ++.||||.+..... ....+|.+|+++|++++|+||++++|++...+..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            3567888999999999999998632      36799999875432 3345799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC--------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEG--------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ++||||+.+|+|.+++....        ...+.|..++.|+.||+.||+|||+
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  137 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA  137 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999986432        2247889999999999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.71  E-value=5e-17  Score=160.58  Aligned_cols=117  Identities=28%  Similarity=0.499  Sum_probs=100.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|...++||+|+||.||+++..      ++..||+|.++.......++|.+|++++++++|+||+++++++.+.+..++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            45677899999999999999632      355789999876555556789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCC-------------CCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGR-------------PVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~-------------~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.++++....             ..+++.+++.++.||+.||+|||+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~  140 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS  140 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875321             347899999999999999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.5e-17  Score=173.18  Aligned_cols=123  Identities=22%  Similarity=0.276  Sum_probs=105.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +-|++++.||+|+-|.|.+|+. ..|+.+|||++..+..   .....+.+||.||+-|.|+||++||+++++..++|||+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            4577889999999999999985 5699999999965422   22346889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||+.+|.||+||.+++.  |.+.+..+++.||+.|+.|+|      +|.|..+++
T Consensus        92 Eyv~gGELFdylv~kG~--l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlL  144 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKGP--LPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLL  144 (786)
T ss_pred             EecCCchhHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhh
Confidence            99999999999987665  888899999999999999985      566665554

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.71  E-value=7.7e-17  Score=159.80  Aligned_cols=116  Identities=23%  Similarity=0.398  Sum_probs=99.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|...++||+|+||.||+|+.. +++.||||+++..... ....+.+|+++|++++|+||+++++++.+++..+|||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            57888899999999999999864 6789999998754322 234678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. ++|.+++.+... .+++...+.++.||++||+|||+.
T Consensus        85 ~~-~~L~~~~~~~~~-~~~~~~~~~~~~ql~~al~~lH~~  122 (291)
T cd07844          85 LD-TDLKQYMDDCGG-GLSMHNVRLFLFQLLRGLAYCHQR  122 (291)
T ss_pred             CC-CCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            97 489988875443 588999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.71  E-value=8e-17  Score=159.61  Aligned_cols=115  Identities=25%  Similarity=0.403  Sum_probs=93.5

Q ss_pred             CCCccceeccCCceeEEEEEc--CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhC---CCCcccceeeEEEe-----C
Q 011175          368 GFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGG--QGEREFKAEVEIISRI---HHRHLVSLVGYCIS-----D  435 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~--~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l---~HpNIv~l~g~~~~-----~  435 (492)
                      +|.+.+.||+|+||.||+|+.  .+|+.||||+++....  .....+.+|+++++++   +|+||++++++|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            578889999999999999985  2467899999875432  2234677888877766   69999999999863     4


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..++|||||+. |+|.+++.......+++.+++.|+.||++||+|||+
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~  128 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS  128 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            56899999996 689999876554568999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.71  E-value=6.3e-17  Score=161.37  Aligned_cols=117  Identities=27%  Similarity=0.527  Sum_probs=98.3

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CC--EEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||.||+|++++ +.  .++||+++... ....++|.+|+++++++ +|+||++++++|.+.+..|+|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            468888999999999999998643 33  47888887432 23346799999999999 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.++++...              ...+.+..+++|+.||++||+|||+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~  137 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE  137 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997532              1247889999999999999999976

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.71  E-value=3.6e-17  Score=163.53  Aligned_cols=119  Identities=26%  Similarity=0.421  Sum_probs=99.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.+.||+|+||.||++++.        ++..||||+++... ....+++.+|+++|+++ +|+||++++++|...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456778899999999999999741        23479999987432 23346799999999999 899999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..||||||+.+|+|.++|+...              ...++|.++++++.||++||+|||++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  156 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ  156 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999987532              13478889999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.71  E-value=9.9e-17  Score=158.27  Aligned_cols=116  Identities=21%  Similarity=0.369  Sum_probs=99.0

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|.+.+.||+|+||.||+|+.. +++.||||+++....  ...+.+.+|+++|++++|+||++++|+|.+++..|+||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4777899999999999999864 588999999875432  2345789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. |+|.+++.... ...+++.+++.|+.||++||+|||+.
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~  120 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR  120 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            97 68888886533 24589999999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.71  E-value=6.5e-17  Score=159.73  Aligned_cols=115  Identities=19%  Similarity=0.317  Sum_probs=99.3

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      |++.+.||+|+||.||+|++. ++..+++|.+........+.|.+|+++|++++|+||++++++|...+..|+||||+.+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            455678999999999999864 4678899998755444556899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|..++++.. ..+++..++.++.||++||+|||+.
T Consensus        87 ~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~  122 (282)
T cd06643          87 GAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHEN  122 (282)
T ss_pred             CcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99998886533 3589999999999999999999863

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.71  E-value=7.8e-17  Score=156.72  Aligned_cols=115  Identities=25%  Similarity=0.458  Sum_probs=99.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~~lV~Ey~  445 (492)
                      ++|++.++||+|+||.||++.. .|+.||+|.++..  ...+.|.+|+.+|++++|.||++++|++.. ++..+|||||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            4678889999999999999987 5788999998643  234679999999999999999999998654 56789999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.++++......+.+..+++++.||+.||+|||++
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  121 (256)
T cd05082          83 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN  121 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999876555689999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.71  E-value=4.9e-17  Score=172.01  Aligned_cols=111  Identities=21%  Similarity=0.255  Sum_probs=95.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ..+|.+.++||+|+||.||++++. .++.||||...      ...+.+|+++|++|+|+|||+++++|..++..+|||||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            457889999999999999999864 47889999643      23577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. |+|++++.... ..++|.++++|+.||++||+|||++
T Consensus       242 ~~-~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~  279 (461)
T PHA03211        242 YR-SDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHGE  279 (461)
T ss_pred             cC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            94 78988886543 3589999999999999999999763

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.71  E-value=5.1e-17  Score=160.98  Aligned_cols=119  Identities=26%  Similarity=0.449  Sum_probs=100.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|+..+.||+|+||.||++.+.      +++.||||+++.... ...++|.+|+++|++++|+||++++++|.+++..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            356888899999999999999853      457899999875433 2346799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEG--------------------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~--------------------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|||||+.+|+|.++++...                    ...+.+.+++.++.||++||+|||++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~  149 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER  149 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999986421                    12477888999999999999999864

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.71  E-value=7.3e-17  Score=158.83  Aligned_cols=116  Identities=26%  Similarity=0.451  Sum_probs=99.3

Q ss_pred             CCCccceeccCCceeEEEEEcC-----CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~  439 (492)
                      .|...+.||+|+||.||++.+.     .++.||||+++..... ..++|.+|++++++++|+||++++++|..  ....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            4666789999999999999863     3678999999755443 45689999999999999999999999987  55789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|.+++..... .++|..++.++.||++||+|||++
T Consensus        85 lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~  128 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHRD-QINLKRLLLFSSQICKGMDYLGSQ  128 (284)
T ss_pred             EEEecCCCCCHHHHHHhCcc-ccCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999976542 489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.71  E-value=3.7e-17  Score=161.55  Aligned_cols=125  Identities=21%  Similarity=0.327  Sum_probs=102.4

Q ss_pred             cHHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe-
Q 011175          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS-  434 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~-  434 (492)
                      .++.+....++|++.+.||+|+||.||+++. .+++.||||+++... ...+++.+|+.+++++ +|+||++++++|.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            3455666778899999999999999999986 457899999886432 2245788999999999 79999999999853 


Q ss_pred             ----CCeEEEEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          435 ----DDRRLLIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       435 ----~~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                          ++..+|||||+.+|+|.++++.  .....+++..+..++.||++||+|||+
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  142 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV  142 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh
Confidence                4568999999999999988753  223458889999999999999999985

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=9.9e-17  Score=156.24  Aligned_cols=116  Identities=26%  Similarity=0.505  Sum_probs=100.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-----cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||.||++.. .+++.||||+++....     ...+.|.+|+++|++++|+||++++|++.+++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688899999999999999985 4688999999864321     123578999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+++|.+++....  .+.+..+++|+.||++||+|||+.
T Consensus        82 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~  123 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSN  123 (263)
T ss_pred             EEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999887543  478889999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.71  E-value=7.2e-17  Score=179.60  Aligned_cols=125  Identities=23%  Similarity=0.318  Sum_probs=103.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|+.. +|+.||||+++....   ...++|.+|++++++++|+||++++++|.+++..||||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            57888999999999999999864 588999999975322   22357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC---------CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEG---------RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~---------~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.||+|.+++....         ...+++..+++|+.||++||+|||+      |+|..+|+
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNIL  145 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNIL  145 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEE
Confidence            9999999999886321         1235677889999999999999975      44555443

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.71  E-value=7e-17  Score=160.88  Aligned_cols=116  Identities=19%  Similarity=0.354  Sum_probs=102.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|...+.||+|+||.||+|.. .+++.||||.++.......+.|.+|+.++++++|+||++++|+|...+..|+||||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            5678889999999999999985 467889999987555555667999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+|+|.+++.+.   .+.+.+++.|+.||++||+|||+..
T Consensus        99 ~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~g  135 (293)
T cd06647          99 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQ  135 (293)
T ss_pred             CCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999998653   3788999999999999999999743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.71  E-value=7.5e-17  Score=159.53  Aligned_cols=116  Identities=28%  Similarity=0.452  Sum_probs=98.1

Q ss_pred             CCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~  439 (492)
                      .|++.+.||+|+||.||++++     .+++.||||.++... ....++|.+|+++|++++|+||++++++|.+.  +..+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            366778999999999999974     246789999997543 23346799999999999999999999999875  5688


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+|+|.+++.+.. ..++|..++.|+.||+.||+|||++
T Consensus        85 lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~  128 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSR  128 (284)
T ss_pred             EEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999986543 3589999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.71  E-value=1.3e-16  Score=156.25  Aligned_cols=116  Identities=25%  Similarity=0.483  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-----cchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~  438 (492)
                      .+|+..++||+|+||.||++.. .+++.|++|+++....     ...+.|.+|+++|++|+|+||+++++++.+  .+..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3688889999999999999985 4588999998864321     223568899999999999999999999876  3567


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|||||+.+++|.+++.+..  .+++...+.++.||++||+|||+.
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~  125 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSN  125 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999997644  378999999999999999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.71  E-value=7.7e-17  Score=159.97  Aligned_cols=116  Identities=29%  Similarity=0.444  Sum_probs=97.3

Q ss_pred             CCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      +|++.++||+|+||.||+|+..      ..+.|++|+++.... ...++|.+|+++|++|+|+||++++++|...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            4677899999999999999852      235689998875433 334679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC----------------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEG----------------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~----------------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.+++....                      ...+++.+++.|+.||++||+|||+
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~  145 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE  145 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999886421                      1247889999999999999999985

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.71  E-value=6.8e-17  Score=156.57  Aligned_cols=115  Identities=24%  Similarity=0.374  Sum_probs=102.0

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|+..++||+|+||.||+|++.+ ++.|++|+++....  .++|.+|++++++++|+||++++|+|.+.+..||||||+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence            568888999999999999999754 78999999875322  568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++|.+++...+ ..+++..++.++.||++||+|||+.
T Consensus        81 ~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~  118 (256)
T cd06612          81 GAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSN  118 (256)
T ss_pred             CCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999987543 3589999999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.71  E-value=7.5e-17  Score=157.82  Aligned_cols=116  Identities=27%  Similarity=0.419  Sum_probs=95.9

Q ss_pred             CCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-----
Q 011175          369 FADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----  437 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-----  437 (492)
                      |++.++||+|+||.||+|.+..    +..||||+++....  ...+.|.+|+++|++++|+||++++|++.+.+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            4567899999999999998632    36799999975432  234579999999999999999999999876554     


Q ss_pred             -EEEEEecCCCCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 -RLLIYDYVPNNTLYFHLHGE----GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 -~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       .++||||+.+|+|..++...    ....+++...+.++.||+.||+|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~  132 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR  132 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence             68999999999999888542    234589999999999999999999863

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.71  E-value=5.2e-17  Score=167.49  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=96.4

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~~  439 (492)
                      +|+..++||+|+||.||+++. .+|+.||||++....  ....+++.+|+++|+.++|+||+++++++...+     ..|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467789999999999999985 468999999986432  223467899999999999999999999998776     789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+. ++|.+++....  .+++..++.|+.||++||+|||+.
T Consensus        81 lv~e~~~-~~l~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~  122 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHSA  122 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999996 67888876543  489999999999999999999763

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.71  E-value=8.3e-17  Score=158.76  Aligned_cols=115  Identities=23%  Similarity=0.310  Sum_probs=100.8

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|++.+.||+|+||.||+|.+ .+|+.||||+++...  ....+.|.+|++++++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            477889999999999999986 468899999997544  23346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      + +++|.+++.... ..+++.++++++.||++||+|||+.
T Consensus        81 ~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  118 (286)
T cd07832          81 M-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHAN  118 (286)
T ss_pred             c-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9 999999987544 4589999999999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.71  E-value=7.3e-17  Score=159.42  Aligned_cols=113  Identities=33%  Similarity=0.488  Sum_probs=95.7

Q ss_pred             CCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~l  440 (492)
                      |+..++||+|+||+||++.+     .+++.||||+++.... ...+.|.+|+++|++++|+||++++++|...  ...+|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            47789999999999988653     3577899999975433 3456799999999999999999999998764  35789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+|+|.+++.+.   .+++.+++.|+.||++||+|||++
T Consensus        86 v~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~  126 (283)
T cd05080          86 IMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQ  126 (283)
T ss_pred             EecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999998754   389999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.71  E-value=5e-17  Score=164.98  Aligned_cols=117  Identities=26%  Similarity=0.406  Sum_probs=97.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      .+|.+.+.||+|+||.||+++..        ++..||||+++.... ...++|.+|+++|+++ +|+||++++++|.+.+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            45788899999999999999742        123689998875432 2346899999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..++||||+.+|+|.++|....              ...+.|.++++|+.||++||+|||+
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~  152 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS  152 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986532              2347899999999999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.71  E-value=8.5e-17  Score=159.77  Aligned_cols=118  Identities=28%  Similarity=0.400  Sum_probs=99.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-----------------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccce
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-----------------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-----------------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      ++|++.+.||+|+||.||++++.+                 +..||+|+++..... ..++|.+|+++|++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            467888999999999999987532                 245899998754433 34679999999999999999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCC---------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEG---------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~---------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++|..++..++||||+.+++|.++|.+..         ...+++..++.++.||++||+|||+.
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~  149 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL  149 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999987543         12589999999999999999999863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.71  E-value=5e-17  Score=157.88  Aligned_cols=114  Identities=25%  Similarity=0.529  Sum_probs=98.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.+.||+|+||.||+|.. +++.||||+++..  ...+.|.+|+.+|++++|+||+++++++.. +..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~v~e~~~   81 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLGVILH-NGLYIVMELMS   81 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CCcEEEEECCC
Confidence            4578889999999999999986 6788999998643  234679999999999999999999999875 45799999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++.......+.+..++.++.||++||+|||++
T Consensus        82 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  119 (254)
T cd05083          82 KGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK  119 (254)
T ss_pred             CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999866555689999999999999999999863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.71  E-value=8.4e-17  Score=158.65  Aligned_cols=115  Identities=29%  Similarity=0.492  Sum_probs=97.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||.||+|.+.+ |+    .||+|+++.... ....+|.+|+++|++++|+||++++|+|.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            457778999999999999998632 32    589998875543 234679999999999999999999999987 78899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.++++.... .+++..+++++.||++||+|||+
T Consensus        86 v~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~  127 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD-NIGSQYLLNWCVQIAKGMSYLEE  127 (279)
T ss_pred             EEecCCCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999976433 48999999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.71  E-value=8.4e-17  Score=161.05  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=100.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|+..+.||+|+||.||+++.. .++.|+||.++....   ...+.|.+|++++++++|+||++++++|..++..+|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            46888899999999999999864 478899999875432   23457889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++...+  .+.+..++.++.||++||+|||++
T Consensus        81 e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~  120 (305)
T cd05609          81 EYVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLHNY  120 (305)
T ss_pred             ecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999997653  488899999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.71  E-value=1e-16  Score=155.23  Aligned_cols=115  Identities=31%  Similarity=0.530  Sum_probs=100.2

Q ss_pred             CccceeccCCceeEEEEEcCC-----CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          370 ADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~-----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .+.+.||+|+||.||++++.+     +..||+|+++..... ..+.|.+|+++|++++|+||++++++|.+.+..++|||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            456889999999999998643     378999999755443 45689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+++|.+++.......+.+.+++.++.||++||+|||+.
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~  122 (258)
T smart00219       82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK  122 (258)
T ss_pred             ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999765443389999999999999999999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.71  E-value=7.7e-17  Score=156.58  Aligned_cols=111  Identities=26%  Similarity=0.411  Sum_probs=96.2

Q ss_pred             ceeccCCceeEEEEEcCC--CC--EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD--GR--EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~--g~--~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|.+.+  ++  .||||+++.... ...++|.+|+++|++++|+||+++++++.+ +..++||||+.+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998643  32  589999986555 455789999999999999999999999988 889999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++.+.....++|...+.++.||++||+|||++
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~  116 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK  116 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999765434689999999999999999999864

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.71  E-value=1.1e-16  Score=155.13  Aligned_cols=111  Identities=31%  Similarity=0.569  Sum_probs=97.5

Q ss_pred             ceeccCCceeEEEEEcCC----CCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|.+.+    +..|+||+++...... .+++.+|++++++++|+||+++++++.+.+..+|||||+.+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999998643    7789999997554333 57899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEG-------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~-------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|.+++....       ...+++.++++++.||++||+|||+
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~  123 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS  123 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc
Confidence            99999997641       2458999999999999999999986

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=1.3e-16  Score=155.05  Aligned_cols=117  Identities=24%  Similarity=0.389  Sum_probs=103.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|+..+.||+|+||.||+|... +++.++||++........+.+.+|+++|++++|+||++++|++.+.+..||||||+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            56888899999999999999864 57789999998665556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++|.+++.... ..+++.+...|+.||++||+|||+.
T Consensus        83 ~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~  120 (262)
T cd06613          83 GGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHET  120 (262)
T ss_pred             CCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999887542 3488999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.71  E-value=1e-16  Score=158.19  Aligned_cols=111  Identities=22%  Similarity=0.339  Sum_probs=95.8

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|+..++||+|+||.||+|+. .+++.||||++.... ....++|.+|+++|++++|+||++++++|...+..+|||||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            577789999999999999985 468899999986543 233457999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|..+.      .+.+.....++.||+.||+|||+.
T Consensus        82 ~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~  114 (279)
T cd06619          82 DGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSL  114 (279)
T ss_pred             CCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999996553      267888889999999999999864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.71  E-value=1.3e-16  Score=157.42  Aligned_cols=116  Identities=25%  Similarity=0.473  Sum_probs=99.4

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|+..++||+|+||.||+|+.. +|+.||||+++..... ..+.+.+|+++|++++|+||++++++|.+.+..+|||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            4778899999999999999964 5889999999765432 3456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+ +|.+++.... +..+++.++++++.||++||+|||+.
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  119 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN  119 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            85 8888876543 34589999999999999999999864

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.71  E-value=3.4e-17  Score=158.94  Aligned_cols=113  Identities=30%  Similarity=0.471  Sum_probs=97.6

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcch--HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~--~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      |++.++||+|+||.||++... +++.||+|+++.......  ..+.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            567799999999999999964 466899999986544333  23567999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++|.++|....  .+++..++.++.||++||+|||+
T Consensus        81 ~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~Lh~  116 (260)
T PF00069_consen   81 PGGSLQDYLQKNK--PLSEEEILKIAYQILEALAYLHS  116 (260)
T ss_dssp             TTEBHHHHHHHHS--SBBHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc--ccccccccccccccccccccccc
Confidence            9999999997332  48999999999999999999976

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.71  E-value=1.1e-16  Score=154.86  Aligned_cols=112  Identities=29%  Similarity=0.529  Sum_probs=98.2

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      ++||+|+||.||++.+.+++.||||+++..... ..++|.+|++++++++|+||++++++|.+.+..++||||+.+++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            469999999999999867999999998755443 4568999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       452 ~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +++.+... .+++..++.++.|+++||+|||+++
T Consensus        81 ~~l~~~~~-~~~~~~~~~~~~~~~~~l~~lH~~~  113 (251)
T cd05041          81 TFLRKKKN-RLTVKKLLQMSLDAAAGMEYLESKN  113 (251)
T ss_pred             HHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99975432 4788999999999999999998643

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.70  E-value=1e-16  Score=157.11  Aligned_cols=114  Identities=28%  Similarity=0.426  Sum_probs=92.5

Q ss_pred             CccceeccCCceeEEEEEcCCC-C--EEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC------CeE
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDG-R--EVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD------DRR  438 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g-~--~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------~~~  438 (492)
                      .+.++||+|+||.||+|++.++ +  .||||.++...  ....++|.+|+++|++++|+||++++|+|...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            4568899999999999987543 2  58999987532  23346799999999999999999999998642      245


Q ss_pred             EEEEecCCCCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGE----GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ++|||||.+|+|.+++...    ....+++.+.+.++.||++||+|||+
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  130 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS  130 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998887432    22358899999999999999999986

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.70  E-value=1.1e-16  Score=157.77  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=97.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHH-HHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEI-ISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~i-l~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|.+.+.||+|+||.||+++.. +|+.||||+++.... ....++.+|+++ ++.++|+||++++++|..++..|+|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            46888899999999999999864 589999999975432 334566667765 666799999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          444 YVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       444 y~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      ||+ |+|.+++...  ....+++..++.++.||+.||+|||++++
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~  124 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS  124 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            996 6787777542  23468999999999999999999997643

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.70  E-value=7.2e-17  Score=162.30  Aligned_cols=117  Identities=27%  Similarity=0.440  Sum_probs=98.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ++|.+.++||+|+||.||+++..        .+..||||+++.... ....+|.+|+++|+++ +|+||++++++|.+.+
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG   91 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence            56778899999999999999741        244689999875432 3345799999999999 6999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..||||||+.+|+|.+++....              ...+.|.++++|+.||+.||+|||+
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~  152 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES  152 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986532              1348899999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.70  E-value=8.5e-17  Score=157.72  Aligned_cols=116  Identities=26%  Similarity=0.365  Sum_probs=97.2

Q ss_pred             cCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.++||+|+||.||+|.+.+    ...|+||+.+... ....+.|.+|+++|++++|+||++++++|.+ +..|||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            457778999999999999998643    2468999887544 2344679999999999999999999999875 567899


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++.... ..+++.+++.++.||++||+|||+.
T Consensus        85 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~  126 (270)
T cd05056          85 MELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESK  126 (270)
T ss_pred             EEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999997543 3489999999999999999999864

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.70  E-value=1.4e-16  Score=157.05  Aligned_cols=113  Identities=24%  Similarity=0.413  Sum_probs=98.3

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      |+..+.||+|+||.||+|.. .+++.||||++.... ....++|.+|++++++++|+||++++++|.+++..||||||+.
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            55678899999999999985 467899999986433 2334579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++...   .+++...+.++.||++||+|||++
T Consensus        86 ~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~  120 (277)
T cd06641          86 GGSALDLLEPG---PLDETQIATILREILKGLDYLHSE  120 (277)
T ss_pred             CCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccC
Confidence            99999988643   388999999999999999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.70  E-value=9.3e-17  Score=162.48  Aligned_cols=110  Identities=25%  Similarity=0.397  Sum_probs=89.7

Q ss_pred             ceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHH-HHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+++.. +++.||||+++...   ....+++.+|.. +++.++|+||++++++|.+.+..||||||+.+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999864 57789999986422   122334555544 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+.+.+.+.|+.||++||+|||++
T Consensus        81 ~~L~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~  115 (325)
T cd05602          81 GELFYHLQRER--CFLEPRARFYAAEIASALGYLHSL  115 (325)
T ss_pred             CcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987654  367778888999999999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.70  E-value=1.4e-16  Score=157.75  Aligned_cols=117  Identities=21%  Similarity=0.355  Sum_probs=103.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+.|...+.||+|+||.||+|.+. +++.|+||+++.... ..+.|.+|+++|++++|+||++++++|...+..||||||
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            355777788999999999999975 588899999975443 456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++.... ..+++..++.|+.||++||+|||++
T Consensus        97 ~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~  135 (286)
T cd06614          97 MDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ  135 (286)
T ss_pred             cCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999998654 3589999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.70  E-value=1.8e-16  Score=154.46  Aligned_cols=118  Identities=24%  Similarity=0.385  Sum_probs=102.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.+.||+|+||.||+|.. .+++.|+||+++... ....++|.+|+++|+.++|+||+++++.+...+..+|||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            4688899999999999999985 467889999986433 23456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.++++.... ..+++.....++.||++||+|||++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~  121 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN  121 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999976432 4589999999999999999999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.70  E-value=1.4e-16  Score=155.19  Aligned_cols=108  Identities=23%  Similarity=0.403  Sum_probs=91.8

Q ss_pred             eeccCCceeEEEEEc---CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          374 LLGEGGFGSVYKGYL---PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      .||+|+||.||+|.+   .+++.||||+++....  ...++|.+|+.+|++++|+||++++|+|. .+..+|||||+.+|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   3467899999874432  23467999999999999999999999985 45678999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|.+++....  .+++..+++|+.||++||+|||+.
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~  114 (257)
T cd05116          81 PLNKFLQKNK--HVTEKNITELVHQVSMGMKYLEET  114 (257)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999997543  488999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=2.8e-17  Score=166.47  Aligned_cols=125  Identities=20%  Similarity=0.200  Sum_probs=107.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +-|++.+.||+|.|..|-++++ -.|+.||||++.+...++  ...+.+|++.|+-++|+|||+||++......+|||+|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            4477778999999999999873 479999999997654443  3578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      +-.+|||++||.+... .|.+....+++.||++|+.|+      |+|.|+.++.|
T Consensus        98 LGD~GDl~DyImKHe~-Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVF  151 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHEE-GLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVF  151 (864)
T ss_pred             ecCCchHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEE
Confidence            9999999999986543 378888889999999999997      46888877765

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.70  E-value=1.5e-16  Score=157.80  Aligned_cols=118  Identities=23%  Similarity=0.279  Sum_probs=98.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV~  442 (492)
                      ++|...+.||.|+||.||++.+. +++.||+|++..... ...++|.+|+++|++++|+||++++++|.+.  +.+||||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            46788899999999999999974 578899999875433 3456799999999999999999999998754  4689999


Q ss_pred             ecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++..  .....+.+...+.|+.||++||+|||+.
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~  124 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR  124 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999887753  2234578889999999999999999863

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=2.8e-17  Score=172.25  Aligned_cols=125  Identities=29%  Similarity=0.382  Sum_probs=103.5

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      ...++|.++++||+|.||+|++++++ +++.+|||+|++..   .++.+..+.|.+|+.-. +|+.|++|+++|.+.+++
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            34577999999999999999999974 57889999998654   34456788888888877 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+||||+.||||+.+.+   .+.+++.++.-||..|+.||+|||+      |.|+.+|+
T Consensus       445 ~fvmey~~Ggdm~~~~~---~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiL  500 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIH---TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLL  500 (694)
T ss_pred             EEEEEecCCCcEEEEEe---cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheE
Confidence            99999999999543333   2358999999999999999999996      45555554

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.70  E-value=1.5e-16  Score=163.37  Aligned_cols=112  Identities=20%  Similarity=0.260  Sum_probs=95.5

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ...+|.+.+.||+|+||.||+|+.. +++.||||+...      ..+.+|+.+|++|+|+||++++++|.+.+..+||||
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc------cccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            3467999999999999999999864 467899997542      234579999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+ .|+|++++.... ..+.|.++++|+.||++||+|||+.
T Consensus       138 ~~-~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~  176 (357)
T PHA03209        138 HY-SSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQ  176 (357)
T ss_pred             cc-CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99 568888886543 3589999999999999999999753

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.70  E-value=1.1e-16  Score=158.20  Aligned_cols=116  Identities=28%  Similarity=0.425  Sum_probs=94.8

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||.||+|.+. +++    .|++|++..... ...++|.+|+.++++++|+||++++|+|. ++..++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence            35677789999999999999863 344    478888764332 23357888999999999999999999885 456789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+||+.+|+|.++++... ..++|..++.|+.||++||+|||+.
T Consensus        86 i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~  128 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEH  128 (279)
T ss_pred             EEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999997543 3589999999999999999999863

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.70  E-value=1.7e-16  Score=157.62  Aligned_cols=117  Identities=21%  Similarity=0.356  Sum_probs=99.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.+.||+|.||.||+|+.. +|+.||||+++....  ...+.|.+|+++|++++|+||+++++++.+.+..|||||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            56888999999999999999864 688999999865432  223578899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+. ++|.+++.......+++.....++.||++||+|||++
T Consensus        82 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~  121 (294)
T PLN00009         82 YLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH  121 (294)
T ss_pred             ccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            995 5788887655444467888889999999999999864

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.70  E-value=5.3e-17  Score=159.90  Aligned_cols=113  Identities=23%  Similarity=0.391  Sum_probs=97.4

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      |+..+.||+|+||.||+|.+. +++.||||+++... ....++|.+|++++++++|+||++++++|..++..||||||+.
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            445678999999999999853 57789999987443 2334579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++...   .+.+..++.++.||++||+|||++
T Consensus        86 ~~~L~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~  120 (277)
T cd06642          86 GGSALDLLKPG---PLEETYIATILREILKGLDYLHSE  120 (277)
T ss_pred             CCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999988643   478999999999999999999864

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.70  E-value=1.3e-16  Score=159.13  Aligned_cols=115  Identities=18%  Similarity=0.379  Sum_probs=102.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .+|...+.||.|+||.||+|+. .+|+.|+||.+........+.|.+|++++++++|+||++++++|...+..|+||||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            3588889999999999999984 568899999997655555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.+.   .+++.+++.++.||++||+|||+.
T Consensus        99 ~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~  134 (296)
T cd06655          99 AGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHAN  134 (296)
T ss_pred             CCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999988643   389999999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.70  E-value=1.6e-16  Score=155.06  Aligned_cols=108  Identities=27%  Similarity=0.448  Sum_probs=91.5

Q ss_pred             eccCCceeEEEEEcC---CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||+|.+.   ++..||||+++..... ..++|.+|+++|++|+|+||++++|+|. .+..+|||||+.+|+|
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L   81 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPL   81 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCH
Confidence            899999999999753   3557999999754332 3457999999999999999999999885 4578999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++.... ..+++.++++++.||++||+|||++
T Consensus        82 ~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  114 (257)
T cd05115          82 NKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGK  114 (257)
T ss_pred             HHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99987533 3589999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.70  E-value=1.8e-16  Score=155.76  Aligned_cols=115  Identities=23%  Similarity=0.337  Sum_probs=101.2

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|...+.||.|+||.||+|+.. +++.||||++.... .....+|.+|++++++++|+||++++++|.++...|||+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            5777789999999999999864 58899999987543 333467899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+|+|.++++..   .+++...+.++.||++||+|||+..
T Consensus        82 ~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~  118 (274)
T cd06609          82 GGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEG  118 (274)
T ss_pred             CCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999998754   4899999999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.69  E-value=1e-16  Score=158.25  Aligned_cols=116  Identities=32%  Similarity=0.421  Sum_probs=96.8

Q ss_pred             CCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      +|.+.+.||+|+||.||+|.+.      +++.||||+++...... .+.|.+|++++++++|+||++++++|.+.+..++
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            3556688999999999999853      24679999997543322 3568999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC--------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGE--------------GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ++||+.+++|.+++..+              .+..+.+..+++++.||++||+|||+
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~  142 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS  142 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998532              12347888899999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.69  E-value=2.1e-16  Score=157.85  Aligned_cols=116  Identities=22%  Similarity=0.383  Sum_probs=99.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|...+.||+|+||.||+|+.. +++.||+|.++.... .....+.+|+++|++|+|+||+++++++.+.+..+|||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            56888899999999999999864 578899999875432 2345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. ++|..++.... ..+.+...+.++.||++||+|||++
T Consensus        86 ~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~  123 (301)
T cd07873          86 LD-KDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHRR  123 (301)
T ss_pred             cc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            97 58988886543 3478899999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.69  E-value=7.4e-17  Score=160.69  Aligned_cols=110  Identities=21%  Similarity=0.330  Sum_probs=96.5

Q ss_pred             cceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ...||+|+||.||++.. .+++.||||+++.......+.|.+|+.++++++|+||++++++|...+..|+||||+.+++|
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L  106 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGAL  106 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcH
Confidence            46699999999999985 45889999998765545556799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++...   .+++.+.+.++.||++||+|||++
T Consensus       107 ~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~  137 (292)
T cd06658         107 TDIVTHT---RMNEEQIATVCLSVLRALSYLHNQ  137 (292)
T ss_pred             HHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9988543   378999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.69  E-value=1.3e-16  Score=155.47  Aligned_cols=115  Identities=22%  Similarity=0.294  Sum_probs=101.1

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +|+..+.||+|+||.||++... +++.||||++..... ...++|.+|++++++++|+||++++++|...+..+|||||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            5677789999999999999874 588999999875533 33467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++|.+++.... ..+.+....+++.||++||+|||+
T Consensus        82 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~  118 (265)
T cd06605          82 DGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHE  118 (265)
T ss_pred             CCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999987543 458889999999999999999998

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.69  E-value=1.9e-16  Score=156.18  Aligned_cols=115  Identities=26%  Similarity=0.481  Sum_probs=96.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|+..++||+|+||.||+|++ .+|+    .||||+++.... ...++|.+|+.++++++|+||++++|+|.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            4677889999999999999985 3444    489999875433 334679999999999999999999999975 45789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|+++++... ..+.+..++.++.||++||+|||+
T Consensus        86 ~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~  127 (279)
T cd05109          86 VTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEE  127 (279)
T ss_pred             EEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987543 358999999999999999999975

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.69  E-value=2.9e-16  Score=151.55  Aligned_cols=115  Identities=28%  Similarity=0.451  Sum_probs=101.7

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV~  442 (492)
                      +|+..+.||+|+||.||+|... +++.|+||+++....  ...+.|.+|++++++++|+||+++++++.+.  +..++||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            4677899999999999999975 688999999975443  3456899999999999999999999999988  8899999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+++|.+++.+..  .+++.+++.++.|+++||+|||+.
T Consensus        81 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~  120 (260)
T cd06606          81 EYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSN  120 (260)
T ss_pred             EecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999987654  589999999999999999999974

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.69  E-value=2e-16  Score=156.02  Aligned_cols=115  Identities=21%  Similarity=0.349  Sum_probs=99.3

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      |+..++||+|+||.||+|.+ .+|+.||||+++....  ...+.|.+|++++++++|+||++++++|.+.+..|+||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            55678999999999999986 4689999999875432  22357899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      . ++|.+++.......+++..++.++.||++||+|||++
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~  118 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH  118 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            4 6899988765544689999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.69  E-value=3.2e-16  Score=153.26  Aligned_cols=117  Identities=24%  Similarity=0.464  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-----CcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~  438 (492)
                      .+|.+.++||+|+||.||+|+. .+++.||+|++....     ....+.|.+|+++|++++|+||+++++++.+.  +.+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4688889999999999999985 458899999875321     12335789999999999999999999998764  457


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ++||||+.+++|.+++....  .+++...++|+.||++||+|||+.+
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~~  126 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNM  126 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            89999999999999987543  3788899999999999999998643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.69  E-value=2.1e-16  Score=155.83  Aligned_cols=114  Identities=21%  Similarity=0.368  Sum_probs=98.8

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .|+..+.||+|+||.||+|... +++.||||+++... .....+|.+|++++++++|+||++++++|.+++..||||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            3566788999999999999864 57889999987543 234467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++...   .+++.+.+.++.||++||+|||++
T Consensus        85 ~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~  120 (277)
T cd06640          85 GGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSE  120 (277)
T ss_pred             CCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999988643   378889999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.69  E-value=2.2e-16  Score=155.01  Aligned_cols=111  Identities=31%  Similarity=0.584  Sum_probs=93.3

Q ss_pred             ceeccCCceeEEEEEcCC-CC--EEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|++.+ +.  .+++|+++... ....+.|.+|++++.++ +|+||++++++|...+..+|||||+.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            469999999999998744 43  46888887433 23346799999999999 899999999999999999999999999


Q ss_pred             CCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|.++++..+              ...+.+.+++.++.||++||+|||+
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~  130 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ  130 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999987532              1247899999999999999999986

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.69  E-value=9.4e-17  Score=163.52  Aligned_cols=117  Identities=27%  Similarity=0.424  Sum_probs=95.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeC-Ce
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISD-DR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~-~~  437 (492)
                      ++|++.++||+|+||.||+|++.      .++.||||+++.... ...+.+.+|++++.++ +|+||++++|+|... +.
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            46788899999999999999642      246899999975432 2335688999999999 899999999988754 56


Q ss_pred             EEEEEecCCCCCHHHHHhcCC-----------------------------------------------------------
Q 011175          438 RLLIYDYVPNNTLYFHLHGEG-----------------------------------------------------------  458 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~-----------------------------------------------------------  458 (492)
                      +++||||+.+|+|.++|+...                                                           
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            789999999999998885421                                                           


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          459 RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       459 ~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ...++|..+++|+.||++||+|||+
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~  191 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLAS  191 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            1257899999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.69  E-value=1.7e-16  Score=156.69  Aligned_cols=117  Identities=23%  Similarity=0.322  Sum_probs=99.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.++||+|+||.||+|... +++.||||+++...  ....+.|.+|+++|++++|+||++++++|.+.+..+||||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            35888899999999999999864 57899999987533  2234679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |+.++.|..++....  .+++.++..++.||++||+|||++.
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~  120 (288)
T cd07833          81 YVERTLLELLEASPG--GLPPDAVRSYIWQLLQAIAYCHSHN  120 (288)
T ss_pred             cCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999887776654432  3899999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.69  E-value=2.2e-16  Score=154.65  Aligned_cols=117  Identities=24%  Similarity=0.384  Sum_probs=96.8

Q ss_pred             CCCccceeccCCceeEEEEEcCC--CCEEEEEEcccCC----------CcchHHHHHHHHHHHh-CCCCcccceeeEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGG----------GQGEREFKAEVEIISR-IHHRHLVSLVGYCIS  434 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~--g~~VAVK~l~~~~----------~~~~~~f~~Ei~il~~-l~HpNIv~l~g~~~~  434 (492)
                      +|++.+.||+|+||.||+|.+.+  ++.||||+++...          ....+++.+|+.++.+ ++|+||++++++|.+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            46778899999999999999754  6789999885321          1123468889998875 799999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++..+|||||+.+++|.+++..  .....+++..+++++.||++||+|||++
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  132 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE  132 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999888743  2234588999999999999999999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.69  E-value=2.5e-16  Score=154.86  Aligned_cols=114  Identities=21%  Similarity=0.408  Sum_probs=99.3

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .|+..++||+|+||.||+|.+ .+++.||||+++... ....++|.+|++++++++   |+||++++|+|.+++..||||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            466778999999999999995 568899999987543 234467899999999997   999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+++|.++++..   .+++...+.++.||++||+|||+.
T Consensus        82 e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~  120 (277)
T cd06917          82 EYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKV  120 (277)
T ss_pred             ecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999988653   489999999999999999999864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.69  E-value=9.3e-17  Score=157.11  Aligned_cols=112  Identities=31%  Similarity=0.587  Sum_probs=94.7

Q ss_pred             ceeccCCceeEEEEEcCC-------CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPD-------GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.||+|+||.||+|++.+       ++.||||.+..... ....+|.+|+++|++++|+||++++|+|...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            369999999999998642       25789998864432 3456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEG-----RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~-----~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++++..     ...++|.+++.|+.||++||+|||+.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  125 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM  125 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999997532     23478999999999999999999964

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.69  E-value=2.6e-16  Score=152.75  Aligned_cols=117  Identities=21%  Similarity=0.368  Sum_probs=99.1

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~~lV~E  443 (492)
                      +|++.++||+|+||.||++... +++.||||+++...  ....+.+.+|++++++++|+||+++++++.. ++..|||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4788899999999999999853 57889999986433  2334578999999999999999999998764 446789999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+++|.+++.......+.+.+++.|+.||+.||+|||++
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~  121 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK  121 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999765445689999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.69  E-value=2.1e-16  Score=156.89  Aligned_cols=117  Identities=21%  Similarity=0.332  Sum_probs=98.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV  441 (492)
                      ++|+..+.||+|+||.||+|.+. +++.|+||.++.....  ....+.+|+++|++++|+||+++++++...  +..|||
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46777899999999999999975 5788999999754322  234678999999999999999999999887  889999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |||+. ++|.+++.... ..+++..++.|+.||++||+|||+..
T Consensus        85 ~e~~~-~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~  126 (293)
T cd07843          85 MEYVE-HDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNW  126 (293)
T ss_pred             ehhcC-cCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            99997 58988886543 35899999999999999999999753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.69  E-value=2.7e-16  Score=152.74  Aligned_cols=117  Identities=19%  Similarity=0.306  Sum_probs=97.5

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV~  442 (492)
                      +|++.+.||+|+||.||++.. .+++.||+|+++....  ...+.|.+|+++|++++|+||+++++++..  ....++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            467789999999999999985 4678899999874332  234578999999999999999999998864  34578999


Q ss_pred             ecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++...  ....+++..++.++.||++||+|||..
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~  124 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNR  124 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999988643  234589999999999999999999944

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-16  Score=162.64  Aligned_cols=111  Identities=26%  Similarity=0.406  Sum_probs=93.6

Q ss_pred             cceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      .++||.|.||.||-|+. ++|+.||||+|.+..  .+.+..+++|+.||.+++|+.||.|...|+..+.+|+|||-+.|.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            58899999999999985 579999999997544  344567999999999999999999999999999999999999555


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      -|..+|. .++..|.+.....++.||+.||.|||.
T Consensus       649 MLEMILS-sEkgRL~er~TkFlvtQIL~ALr~LH~  682 (888)
T KOG4236|consen  649 MLEMILS-SEKGRLPERITKFLVTQILVALRYLHF  682 (888)
T ss_pred             HHHHHHH-hhcccchHHHHHHHHHHHHHHHHHhhh
Confidence            5555554 444458887777889999999999986

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.69  E-value=1.6e-16  Score=157.57  Aligned_cols=128  Identities=27%  Similarity=0.351  Sum_probs=105.7

Q ss_pred             cccHHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEE
Q 011175          356 MFTYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCI  433 (492)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~  433 (492)
                      ++.++++....++|...+.||+|+||.||++.. .+++.||||+++... ....++.+|+.+++++ +|+||++++++|.
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            345566667788999999999999999999986 468899999986432 2345788999999999 8999999999997


Q ss_pred             eC-----CeEEEEEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          434 SD-----DRRLLIYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       434 ~~-----~~~~lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..     +..|+||||+.+|+|.++++..  ....+.+..++.++.||++||+|||+.
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  147 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN  147 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            64     3579999999999999888631  233588999999999999999999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.69  E-value=1.9e-16  Score=156.33  Aligned_cols=126  Identities=26%  Similarity=0.410  Sum_probs=103.9

Q ss_pred             cHHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe-
Q 011175          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS-  434 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~-  434 (492)
                      +..++....+.|+..++||+|+||.||+|++ .+++.||+|++.... ....++..|+.+++++ +|+||++++++|.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            3445555667888889999999999999986 457889999886432 2345788999999998 79999999999863 


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 -----DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 -----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                           .+..||||||+.+|+|.+++.......+.+..++.++.||++||+|||++
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  140 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH  140 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                 45789999999999999998765545588888899999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.69  E-value=2.6e-16  Score=156.71  Aligned_cols=118  Identities=23%  Similarity=0.354  Sum_probs=98.5

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----  436 (492)
                      ..++|++.++||+|+||.||+|.+. +|+.||||+++....  .....+.+|++++++++|+||++++++|.+.+     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4567888999999999999999974 588999999975432  23357889999999999999999999998655     


Q ss_pred             -----eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 -----RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 -----~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                           .++|||||+.+ +|..++... ...+++.+++.|+.||++||+|||++
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~  135 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKK  135 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence                 78999999976 677776544 33589999999999999999999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.69  E-value=2.1e-16  Score=154.44  Aligned_cols=119  Identities=29%  Similarity=0.412  Sum_probs=100.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCC------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD------  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~------  436 (492)
                      ..++|++.+.||+|+||.||+|... +++.|++|+++.... ..++|.+|+++++++ +|+||++++|+|.+.+      
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            4578899999999999999999964 578899999875432 346799999999999 7999999999997644      


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..+|||||+.+++|.++++...  ...+++..+..|+.||++||+|||++
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~  132 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN  132 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            4799999999999998886533  34589999999999999999999874

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.68  E-value=3e-16  Score=152.67  Aligned_cols=109  Identities=31%  Similarity=0.484  Sum_probs=92.6

Q ss_pred             ceeccCCceeEEEEEcCC----CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|.+..    +..||+|+++.... ...++|.+|+++|++++|+|||+++++|. .+..++||||+.+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            469999999999997532    26899999975543 24567999999999999999999999876 4568999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.++|.+..  .+++..++.++.||++||+|||+.
T Consensus        80 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~  114 (257)
T cd05060          80 GPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESK  114 (257)
T ss_pred             CcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhc
Confidence            99999997654  489999999999999999999753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.68  E-value=2.7e-16  Score=155.04  Aligned_cols=110  Identities=29%  Similarity=0.403  Sum_probs=95.4

Q ss_pred             eccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||++.. .+|+.||||++....   ....+.|.+|+++|++++|+||+++++++...+..||||||+.+|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            79999999999985 468899999986432   22345678999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++.+.....+.+.+++.++.||++||+|||+.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~  114 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR  114 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999766545689999999999999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.68  E-value=1.6e-16  Score=158.59  Aligned_cols=110  Identities=20%  Similarity=0.306  Sum_probs=96.7

Q ss_pred             cceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ...||+|+||.||++.. .+++.||||+++.......+.|.+|+.+|++++|+||++++++|..++..|+||||+.+++|
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L  105 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGAL  105 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCH
Confidence            45799999999999985 36889999999765545566799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..++...   .+++.+++.++.||+.||+|||++
T Consensus       106 ~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~  136 (297)
T cd06659         106 TDIVSQT---RLNEEQIATVCESVLQALCYLHSQ  136 (297)
T ss_pred             HHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9877542   388999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.68  E-value=3e-16  Score=155.62  Aligned_cols=115  Identities=23%  Similarity=0.316  Sum_probs=98.0

Q ss_pred             CCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      +|++.++||+|+||.||+++.    .+|+.||||+++...    ....+.+.+|+++|+++ +|+||++++++|..++..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            467789999999999999985    368899999987432    22345788999999999 699999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||||+.+|+|.++|....  .+.+.+...++.||++||+|||+.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~  124 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLALEHLHKL  124 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999997643  478888889999999999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=2.3e-16  Score=159.89  Aligned_cols=107  Identities=26%  Similarity=0.314  Sum_probs=89.5

Q ss_pred             eccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhC---CCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l---~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ||+|+||.||+|+.. +|+.||||++.....   .....+.+|..++.++   +|+||+++++++.+.+..||||||+.+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            799999999999854 588999999864221   2233566677777665   799999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|.+++..++  .+++..++.|+.||++||+|||+
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qil~al~~LH~  114 (330)
T cd05586          81 GELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHK  114 (330)
T ss_pred             ChHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999987654  48899999999999999999975

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.68  E-value=5.7e-16  Score=149.64  Aligned_cols=117  Identities=16%  Similarity=0.298  Sum_probs=102.5

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..+.||+|+||.||++... +++.|+||++.....  ...+++.+|++++++++|+||+++++++...+..+|||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4777899999999999999964 588999999975443  3456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++.+..  ...+++.+++.|+.||++||+|||+.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~  122 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR  122 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999987642  35689999999999999999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.68  E-value=3.5e-16  Score=155.24  Aligned_cols=117  Identities=22%  Similarity=0.350  Sum_probs=97.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.+.||+|+||.||+|.. .+|+.||||+++...... ...+.+|+++|++|+|+||+++++++.+++..|+|||
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            46788899999999999999985 468899999997543322 3468899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+. ++|.+++.... ..+.+.+++.++.||++||+|||++
T Consensus        84 ~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~  122 (291)
T cd07870          84 YMH-TDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQ  122 (291)
T ss_pred             ccc-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            995 67777765432 3477888889999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.68  E-value=2.1e-16  Score=155.97  Aligned_cols=115  Identities=20%  Similarity=0.333  Sum_probs=97.5

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..+.||+|+||.||+|+.. +|+.||+|+++....  ...+.+.+|+++|++++|+||+++++++.+.+..+|||||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            3677899999999999999864 688999999975332  2235688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. |+|.+++...+ ..+++...+.|+.||++||+|||+.
T Consensus        81 ~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~  118 (284)
T cd07839          81 CD-QDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHSH  118 (284)
T ss_pred             CC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            97 57888776533 3489999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.68  E-value=2.3e-16  Score=153.24  Aligned_cols=108  Identities=24%  Similarity=0.312  Sum_probs=95.3

Q ss_pred             eccCCceeEEEEEcCC-CCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||++++.+ |+.|+||+++....   ...+.+.+|++++++++|+||++++++++..+..||||||+.+|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999754 88999999865433   3346799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+++.+.+  .+++..+++|+.||++||+|||++
T Consensus        81 ~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~  112 (265)
T cd05579          81 ASLLENVG--SLDEDVARIYIAEIVLALEYLHSN  112 (265)
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHc
Confidence            99997654  489999999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=6.5e-16  Score=149.19  Aligned_cols=115  Identities=28%  Similarity=0.461  Sum_probs=101.3

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|++.+.||+|+||.||+++.. +++.|+||++.....  ...++|.+|++++++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4677899999999999999864 578899999976543  3456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++....  .+++..+..++.||+.||+|||++
T Consensus        81 ~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~l~~lH~~  118 (254)
T cd06627          81 AENGSLRQIIKKFG--PFPESLVAVYVYQVLQGLAYLHEQ  118 (254)
T ss_pred             CCCCcHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999987653  489999999999999999999864

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.68  E-value=3.7e-16  Score=152.20  Aligned_cols=110  Identities=25%  Similarity=0.423  Sum_probs=90.9

Q ss_pred             ceeccCCceeEEEEEcC----CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeEEEEEecCC
Q 011175          373 NLLGEGGFGSVYKGYLP----DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLIYDYVP  446 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~~lV~Ey~~  446 (492)
                      ++||+|+||.||+|++.    ++..||||++.... ....+.|.+|+.+|++++|+||++++|+|.. ++..++||||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46999999999999853    23579999986432 2345689999999999999999999998874 556789999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|+|.+++++.. ..+.+..++.++.||++||+|||+
T Consensus        81 ~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~  116 (262)
T cd05058          81 HGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLAS  116 (262)
T ss_pred             CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999997543 246788889999999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.67  E-value=4e-16  Score=154.85  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=96.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCC-CCcccceeeEEEeCCe-----
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDR-----  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~-----  437 (492)
                      ++|+..+.||+|+||.||+|++. +|+.||||+++....  ...+++.+|+++|++++ |+||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            46888899999999999999864 688999999865432  22357899999999995 6999999999987666     


Q ss_pred             EEEEEecCCCCCHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEG---RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~---~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .||||||+.+ +|.+++....   ...+++..++.++.||++||+|||++
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~  129 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH  129 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            8999999985 7888876432   23589999999999999999999874

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.67  E-value=1.9e-16  Score=155.42  Aligned_cols=116  Identities=27%  Similarity=0.372  Sum_probs=101.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||+++...   ....+.+.+|++++++++ |+||+++++++.+.+..+||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            46888899999999999999864 68899999986432   223457899999999998 99999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+++|.+++.+.+  .+.+..++.|+.||++||+|||+.
T Consensus        81 ~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~  121 (280)
T cd05581          81 LEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSK  121 (280)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999997654  489999999999999999999974

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.67  E-value=4e-16  Score=152.95  Aligned_cols=116  Identities=26%  Similarity=0.380  Sum_probs=93.7

Q ss_pred             CCccceeccCCceeEEEEEcC----CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          369 FADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      |.+.++||+|+||.||+|.+.    .++.||||+++...  ....++|.+|+++|++++|+||++++|++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            456788999999999999853    36789999997543  233457999999999999999999999987543      


Q ss_pred             eEEEEEecCCCCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGE----GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..++++||+.+|+|.+++...    ....+++...++|+.||++||+|||++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~  132 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK  132 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            237889999999998887532    122478899999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.67  E-value=3.8e-16  Score=158.10  Aligned_cols=111  Identities=21%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             ceeccC--CceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEG--GFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G--~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ..||+|  +||+||+++. .+|+.||||+++.....  ..+.|.+|+.+++.++|+||++++++|..++..++||||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999986 46899999998754322  235789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|.+++.......+++..++.++.||++||+|||+
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~  119 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ  119 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999876544458899999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.67  E-value=7.4e-16  Score=160.18  Aligned_cols=111  Identities=19%  Similarity=0.248  Sum_probs=94.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC---CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..+|.+.+.||+|+||.||++...   .++.||||.+...     +.+.+|+++|++|+|+|||+++++|...+..||||
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            457999999999999999999753   3567999988632     34678999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+. ++|++++...  ..+.|.+++.|+.||++||+|||+.
T Consensus       166 e~~~-~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~~  204 (392)
T PHA03207        166 PKYK-CDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHGR  204 (392)
T ss_pred             hhcC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9995 6888888433  3589999999999999999999763

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.67  E-value=1.4e-16  Score=166.61  Aligned_cols=114  Identities=26%  Similarity=0.403  Sum_probs=99.1

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-C-----CcccceeeEEEeCCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-H-----RHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-H-----pNIv~l~g~~~~~~~~~l  440 (492)
                      +|.+.++||+|.||+|.+|+. .+++.||||+|+.. ....++-..||.||..|+ |     -|||+++++|...+++||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            678899999999999999985 56899999999843 223355678999999987 4     489999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|++. -+|+++|..++...|+......|+.||+.||.+||+
T Consensus       266 VfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~  307 (586)
T KOG0667|consen  266 VFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE  307 (586)
T ss_pred             eehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999994 579999998877779999999999999999999974

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.67  E-value=6.3e-16  Score=163.16  Aligned_cols=114  Identities=21%  Similarity=0.354  Sum_probs=91.1

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC--------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--------  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--------  435 (492)
                      ..++|.+.++||+|+||.||+|+. .+++.||||++...    ...+.+|+.+|++|+|+|||++++++...        
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC----cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            345799999999999999999986 45889999988532    23456799999999999999999987532        


Q ss_pred             CeEEEEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..++||||||.+ +|.+++..  .....+.+...+.|+.||++||+|||+
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~  188 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS  188 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            246789999975 67666542  223458899999999999999999976

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=3.9e-17  Score=167.72  Aligned_cols=122  Identities=27%  Similarity=0.410  Sum_probs=98.7

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc---hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |..++.||.|+||.||.++. .+.+.||||++...+.+.   ..++++||..|++|+|+|+|.+.|||..+...||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            55567899999999999985 457789999997554332   35799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |- |+-.++|.-. ++.|.+..+..|+.+.++||+|||      +|+|--+|+|
T Consensus       108 Cl-GSAsDlleVh-kKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILL  159 (948)
T KOG0577|consen  108 CL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILL  159 (948)
T ss_pred             Hh-ccHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEe
Confidence            95 4455555322 234788888899999999999995      5777777664

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.67  E-value=8.9e-16  Score=147.47  Aligned_cols=115  Identities=26%  Similarity=0.468  Sum_probs=102.5

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      +|...+.||+|+||.||++... +++.|+||+++.......+++.+|+++|++++|+||++++++|..++..++||||+.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            3677789999999999999975 688999999976554456789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +++|.+++.... ..+++..+..|+.||++||+|||+
T Consensus        81 ~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~  116 (253)
T cd05122          81 GGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHS  116 (253)
T ss_pred             CCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhc
Confidence            999999987643 358999999999999999999987

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.67  E-value=2.2e-16  Score=169.01  Aligned_cols=119  Identities=17%  Similarity=0.179  Sum_probs=98.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----  436 (492)
                      ..++|.+.++||+|+||.||+++. .+|+.||||+++....  .....+.+|+.+|.+++|.||+++++.+...+     
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            446899999999999999999984 5689999999975432  33457899999999999999999988776432     


Q ss_pred             ---eEEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 ---RRLLIYDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ---~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                         .++|||||+.+|+|.++|+...  ...+.+..++.|+.||++||+|||+
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~  161 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS  161 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence               3679999999999999986432  3458889999999999999999975

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.67  E-value=2.7e-16  Score=154.96  Aligned_cols=115  Identities=25%  Similarity=0.342  Sum_probs=98.5

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      |++.+.||+|+||.||+|++. +++.|+||+++.... .+...+.+|++++++++ |+||++++++|.+++..+|||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            566789999999999999975 478899999865432 23345678999999999 999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       +|+|.+++.......+++.+++.++.||++||+|||++
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~  118 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH  118 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC
Confidence             88999988766545689999999999999999999874

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PTZ00284 protein kinase; Provisional

Probab=99.66  E-value=9.2e-16  Score=163.16  Aligned_cols=121  Identities=20%  Similarity=0.312  Sum_probs=95.3

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC------cccceeeEE
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR------HLVSLVGYC  432 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp------NIv~l~g~~  432 (492)
                      +++....++|++.++||+|+||.||+|+. .+++.||||+++... ...+++.+|+++|++++|.      ||++++++|
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            34444567899999999999999999986 457889999996432 2334567788777777554      588899988


Q ss_pred             EeC-CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          433 ISD-DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       433 ~~~-~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ... +.+||||||+ +++|.+++.+.+  .+.+..++.|+.||++||+|||++
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~yLH~~  250 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTE  250 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhc
Confidence            764 4678999988 778888887543  489999999999999999999964

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.66  E-value=7.1e-16  Score=158.20  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=94.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----  436 (492)
                      ..++|.+.+.||+|+||.||+++. .+|+.||||+++...  ....+.+.+|+.+|++++|+||++++++|...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            457899999999999999999985 458899999996432  233457889999999999999999999987543     


Q ss_pred             -eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 -RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 -~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       ..||||||+.+ +|..+++.    .+++.++..++.||++||+|||++
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~  142 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSA  142 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhC
Confidence             46999999975 56666643    278888889999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=2.2e-17  Score=165.11  Aligned_cols=116  Identities=22%  Similarity=0.402  Sum_probs=99.5

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .|...++||+|.||.||||... .++.||+|++...... +.+++.+||.+|.+++|.||.++||.+..+..++++||||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            3566689999999999999863 4788999999865543 4578999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+|++.++|....  .+++.....|+++++.||.|||.+.
T Consensus        94 ~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~~  131 (467)
T KOG0201|consen   94 GGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSEK  131 (467)
T ss_pred             cCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhcc
Confidence            9999999996543  3577777888999999999997543

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.66  E-value=8.4e-16  Score=154.01  Aligned_cols=118  Identities=24%  Similarity=0.395  Sum_probs=97.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~l  440 (492)
                      .++|+..++||+|+||.||+|+.. +|+.||+|+++......  ...+.+|+++|++++|+||+++++++.+.  +..+|
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            467888999999999999999864 58899999997543222  34577899999999999999999999765  56899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||+. ++|.+++.... ..+.+.+++.++.||++||+|||+.+
T Consensus        86 v~e~~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~  128 (309)
T cd07845          86 VMEYCE-QDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENF  128 (309)
T ss_pred             EEecCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999996 47888876532 45899999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.66  E-value=8.9e-16  Score=152.22  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=98.8

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      |...++||+|+||.||++.. .+++.|+||+++.......+.|.+|+.++++++|+||+++++++...+..++||||+.+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            34457899999999999985 46889999998755444556789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++|.+++...   .+++..++.|+.||+.||+|||++
T Consensus       101 ~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~  134 (285)
T cd06648         101 GALTDIVTHT---RMNEEQIATVCLAVLKALSFLHAQ  134 (285)
T ss_pred             CCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998762   388999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.66  E-value=7.7e-16  Score=150.11  Aligned_cols=108  Identities=25%  Similarity=0.314  Sum_probs=94.4

Q ss_pred             eccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||+++.. +++.||||++.....   ...+.|.+|++++++++|+||+++++++.+++..||||||+.+|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            799999999999974 488999999864332   2346799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++++++..  .+.+..++.++.||++||+|||++
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~  112 (262)
T cd05572          81 WTILRDRG--LFDEYTARFYIACVVLAFEYLHNR  112 (262)
T ss_pred             HHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhC
Confidence            99997653  388899999999999999999863

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.66  E-value=7.1e-16  Score=152.52  Aligned_cols=116  Identities=26%  Similarity=0.432  Sum_probs=93.3

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhC---CCCcccceeeEEEeC-----C
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRI---HHRHLVSLVGYCISD-----D  436 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l---~HpNIv~l~g~~~~~-----~  436 (492)
                      +|...+.||+|+||.||+|+.. +|+.||||+++.....  ....+.+|++++++|   +|+||++++++|...     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4777899999999999999864 5889999998754322  234567788777665   799999999998752     4


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..++||||+. ++|.++++......+++..++.|+.||++||+|||+.
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  127 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN  127 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999997 5898888765545589999999999999999999764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.66  E-value=4.1e-16  Score=158.84  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=95.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD------  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------  435 (492)
                      ..++|...+.||+|+||.||+|+. .+++.||||+++...  ....+.+.+|+++|++++|+||++++++|...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            456789999999999999999985 467899999987432  22345688999999999999999999988643      


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ...|+||||+ +++|.+++...   .+++..++.|+.||++||+|||++
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~  137 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHSA  137 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            3468999998 78898777532   389999999999999999999753

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.66  E-value=9.4e-16  Score=150.92  Aligned_cols=115  Identities=20%  Similarity=0.269  Sum_probs=95.0

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCC-CCcccceeeEEEeC--CeEEEEEe
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIH-HRHLVSLVGYCISD--DRRLLIYD  443 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~--~~~~lV~E  443 (492)
                      |++.++||+|+||.||+|+. .+++.||||+++... ......+.+|+.+|+++. |+||++++++|.+.  +..+||||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            55678899999999999985 468899999987532 223345668999999995 99999999999987  88999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |+. |+|.+++.+.. ..++|.+++.++.||++||+|||+..
T Consensus        81 ~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~  120 (282)
T cd07831          81 LMD-MNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRNG  120 (282)
T ss_pred             cCC-ccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            996 58888876543 35899999999999999999998743

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.66  E-value=9.7e-16  Score=153.51  Aligned_cols=116  Identities=24%  Similarity=0.394  Sum_probs=95.4

Q ss_pred             CCCccceeccCCceeEEEEEcC---CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~  439 (492)
                      +|.+.++||+|+||.||+|+..   +++.||||+++...   ....+.+.+|++++++++|+||++++++|.+.  +..|
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            4777899999999999999964   47899999997532   33346788999999999999999999999988  7899


Q ss_pred             EEEecCCCCCHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGE---GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~---~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+.+ +|.+++...   ....+.+...+.|+.||++||+|||+.
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  127 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN  127 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999975 676665422   122578888999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.66  E-value=6.2e-16  Score=154.73  Aligned_cols=116  Identities=32%  Similarity=0.527  Sum_probs=95.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC----EEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|+..++||+|+||.||+|.+. +|+    .||+|+++.... ....+|.+|+.++++++|+||++++|+|... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            45677789999999999999853 343    478898865433 2234789999999999999999999999754 5679


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+||+.+|+|.+++.... ..+.+..++.++.||++||+|||++
T Consensus        86 v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~  128 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEER  128 (303)
T ss_pred             eehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999987543 3478999999999999999999864

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.66  E-value=6.6e-16  Score=153.91  Aligned_cols=109  Identities=18%  Similarity=0.295  Sum_probs=96.3

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      .+||+|+||.||++.. .+|+.||||++..........|.+|+.+|++++|+||++++++|..++..++||||+.+++|+
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            6799999999999986 468899999987554445567999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       452 ~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++...   .+++...+.++.||++||+|||++
T Consensus       106 ~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~  135 (292)
T cd06657         106 DIVTHT---RMNEEQIAAVCLAVLKALSVLHAQ  135 (292)
T ss_pred             HHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            887543   378999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.66  E-value=1.2e-16  Score=165.94  Aligned_cols=118  Identities=24%  Similarity=0.364  Sum_probs=97.5

Q ss_pred             ccceeccCCceeEEEEEcC-CCCEEEEEEcccC----CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe--EEEEEe
Q 011175          371 DQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG----GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR--RLLIYD  443 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~----~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~--~~lV~E  443 (492)
                      ..++||+|+|-+||||... +|.+||--.++..    .....+.|..|+.+|+.|+|+|||+||+++.+.++  +-+|.|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            3477999999999999964 4778875544322    22334689999999999999999999999987665  668899


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLIF  490 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii  490 (492)
                      +|..|+|+.|+.+.++  ++......||+||++||.|||++-.++||
T Consensus       124 L~TSGtLr~Y~kk~~~--vn~kaik~W~RQILkGL~yLHs~~PPIIH  168 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRR--VNIKAIKSWCRQILKGLVYLHSQDPPIIH  168 (632)
T ss_pred             cccCCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhhhcCCCCccc
Confidence            9999999999987655  78888999999999999999997776554

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.66  E-value=9.2e-16  Score=151.06  Aligned_cols=114  Identities=21%  Similarity=0.354  Sum_probs=97.7

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEEEe
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIYD  443 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV~E  443 (492)
                      |++.+.||+|+||.||+|+.. +|+.||||+++...  ....++|.+|++++++++|+||+++++++.+.  +..+||||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            566789999999999999864 47899999997553  23345789999999999999999999999988  88999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+ +|.+++.... ..+++.+++.++.||++||+|||+.
T Consensus        81 ~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~  119 (287)
T cd07840          81 YMDH-DLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSN  119 (287)
T ss_pred             cccc-cHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9974 8888886543 3589999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=2.9e-16  Score=171.68  Aligned_cols=130  Identities=25%  Similarity=0.389  Sum_probs=105.4

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEcC----C----CCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeE
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYLP----D----GREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGY  431 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~~----~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~  431 (492)
                      ++...+++++.+.||+|+||.||+|.+.    .    ...||||+++.... .+.++|..|+++|+.+ +|+|||.|+|+
T Consensus       291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~  370 (609)
T KOG0200|consen  291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGA  370 (609)
T ss_pred             eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheee
Confidence            3334445566679999999999999742    1    34699999986544 3456899999999999 69999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhcCC------------C--CCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          432 CISDDRRLLIYDYVPNNTLYFHLHGEG------------R--PVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       432 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~------------~--~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      |.+.+.+++|+||+.+|+|.++|+.++            .  ..|...+.+.++.|||+||+||      |+|...++|+
T Consensus       371 ~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVL  450 (609)
T KOG0200|consen  371 CTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVL  450 (609)
T ss_pred             eccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEE
Confidence            999999999999999999999998654            0  2388889999999999999998      5555555554

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.66  E-value=6.7e-17  Score=158.67  Aligned_cols=120  Identities=29%  Similarity=0.444  Sum_probs=92.7

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~~lV  441 (492)
                      .|...++||.|+||.||+|.+. .++.||||+...+    .+.-.+|+++|++++|+|||+|+.+|....     .+.||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d----~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQD----KRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCC----CCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            3556789999999999999964 4689999988532    223357999999999999999999887532     23589


Q ss_pred             EecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      ||||.. +|+++++.  +.+..++......+..||.+||+||      |+|+|+.+|++
T Consensus       101 leymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLv  158 (364)
T KOG0658|consen  101 LEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLV  158 (364)
T ss_pred             HHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEE
Confidence            999975 68777763  1233466667777899999999999      57888887763

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.66  E-value=4.5e-16  Score=165.29  Aligned_cols=119  Identities=22%  Similarity=0.351  Sum_probs=90.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-----------------CCCCEEEEEEcccCCCcchHH--------------HHHHH
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-----------------PDGREVAIKQLKIGGGQGERE--------------FKAEV  414 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-----------------~~g~~VAVK~l~~~~~~~~~~--------------f~~Ei  414 (492)
                      .++|++.++||+|+||.||+|.+                 .+++.||||+++.......++              +..|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            56799999999999999999963                 235679999997543322233              34577


Q ss_pred             HHHHhCCCCcc-----cceeeEEEe--------CCeEEEEEecCCCCCHHHHHhcCC----------------------C
Q 011175          415 EIISRIHHRHL-----VSLVGYCIS--------DDRRLLIYDYVPNNTLYFHLHGEG----------------------R  459 (492)
Q Consensus       415 ~il~~l~HpNI-----v~l~g~~~~--------~~~~~lV~Ey~~~GsL~~~l~~~~----------------------~  459 (492)
                      .++.+++|.|+     ++++|+|..        .+..|||||||.+|+|.++|++..                      .
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            77888877655     778888764        356799999999999999887421                      1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          460 PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       460 ~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..++|..++.|+.||++||+|||+.
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~  328 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRI  328 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            1246778889999999999999764

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.65  E-value=9.1e-16  Score=153.70  Aligned_cols=116  Identities=26%  Similarity=0.396  Sum_probs=97.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +.|...++||+|+||.||+|+.. +|+.||||+++....   ...++|.+|++++++++|+||++++|+|.+.+..||||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            34777789999999999999864 588999999864332   22357899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+. |+|.+++.... ..+.+..++.++.||+.||+|||+.
T Consensus        95 e~~~-g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~  134 (307)
T cd06607          95 EYCL-GSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSH  134 (307)
T ss_pred             HhhC-CCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9997 56766665432 3489999999999999999999964

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=2.5e-16  Score=154.40  Aligned_cols=122  Identities=18%  Similarity=0.277  Sum_probs=101.4

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcc--cCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe-----CCeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLK--IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS-----DDRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~--~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-----~~~~  438 (492)
                      ..|...+.||+|+||.|+++.. .+|+.||||++.  ..+..+.+.-.+|+.+|+.++|+||+.+++++..     -+.+
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            4455578899999999999985 468999999996  3444556778899999999999999999999875     4578


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||+|+| +-||+..|+.+.  .|.......+.+||++||.|+|      +|+|+.+++
T Consensus       102 YiV~elM-etDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll  157 (359)
T KOG0660|consen  102 YLVFELM-ETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLL  157 (359)
T ss_pred             EEehhHH-hhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhcccccccccchhhee
Confidence            9999999 678998887653  3888888899999999999985      588887664

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.65  E-value=1.1e-15  Score=155.13  Aligned_cols=111  Identities=28%  Similarity=0.307  Sum_probs=93.7

Q ss_pred             ccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc--------------hHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          371 DQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--------------EREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~--------------~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      +.++||+|+||.||+|+.. +++.||||+++......              ...+.+|+++|++++|+||++++++|...
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            3477999999999999854 68899999986432211              12578999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..+|||||+. |+|.+++....  .+.+...+.++.||++||+|||+.
T Consensus        93 ~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~  138 (335)
T PTZ00024         93 DFINLVMDIMA-SDLKKVVDRKI--RLTESQVKCILLQILNGLNVLHKW  138 (335)
T ss_pred             CcEEEEEeccc-cCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999996 68998886543  488999999999999999999974

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.65  E-value=7.2e-16  Score=152.70  Aligned_cols=115  Identities=24%  Similarity=0.299  Sum_probs=97.4

Q ss_pred             CCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      +|++.++||+|+||.||+++.    .+++.||||+++...    ....+.|.+|+++|.++ +|+||+++++++..++..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            367789999999999999874    356789999986432    12235688999999999 699999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|||||+.+|+|++++..++  .+.+...+.++.|+++||+|||+.
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~  124 (288)
T cd05583          81 HLILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLALDHLHQL  124 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999987543  488899999999999999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.65  E-value=1.3e-15  Score=153.41  Aligned_cols=114  Identities=28%  Similarity=0.431  Sum_probs=96.0

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |...+.||+|+||.||+++. .+++.||||++.....   ...++|.+|+++|++++|+||++++++|.+++..||||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            56678899999999999985 4688999999864322   2235789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. |+|.+++.... ..++|.+++.|+.||++||.|||++
T Consensus       107 ~~-g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~  144 (317)
T cd06635         107 CL-GSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH  144 (317)
T ss_pred             CC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            96 57877775432 3489999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.65  E-value=7.6e-16  Score=164.96  Aligned_cols=134  Identities=25%  Similarity=0.347  Sum_probs=109.1

Q ss_pred             cHHHHHHHhcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe-
Q 011175          358 TYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS-  434 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~-  434 (492)
                      .++.+-...+.|++.++||+|.+|.||+++ .++|+.+|||++.... +..+++..|.+||+.+ +|+|++.++|+|.. 
T Consensus        10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~-d~deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen   10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE-DEEEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc-cccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            344444556778899999999999999998 4678899999987543 3345677888888887 79999999999874 


Q ss_pred             ----CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          435 ----DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       435 ----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                          ++.+|||||||.+|+.-+++.+-....++|..+..|++.+++||.+||+      |+|..+|++
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLL  156 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLL  156 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEE
Confidence                5789999999999999998876555569999999999999999999964      566666653

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.65  E-value=1.1e-15  Score=155.78  Aligned_cols=116  Identities=21%  Similarity=0.300  Sum_probs=96.6

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----  436 (492)
                      ..++|+..+.||+|+||.||++.. .+|+.||||+++....  ...+.+.+|+++|++++|+||++++++|..++     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            456799999999999999999984 4688999999864322  22356889999999999999999999987654     


Q ss_pred             -eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 -RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 -~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       .++|||||+ +++|.+++...   .+++..++.|+.||++||+|||+.
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~al~~LH~~  137 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHE---KLSEDRIQFLVYQMLKGLKYIHAA  137 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence             358999999 77898887542   388999999999999999999874

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.65  E-value=1.3e-15  Score=151.92  Aligned_cols=117  Identities=20%  Similarity=0.359  Sum_probs=96.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|+..++||+|+||.||+|... +++.||||++......  ....+.+|+++|++++|+||++++++|...+      
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            456888999999999999999864 5889999998643322  2345778999999999999999999998654      


Q ss_pred             --eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 --RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 --~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                        ..+|||||+. ++|.+++.... ..+.+.+.+.|+.||++||+|||++
T Consensus        91 ~~~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~  138 (310)
T cd07865          91 KGSFYLVFEFCE-HDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRN  138 (310)
T ss_pred             CceEEEEEcCCC-cCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence              3499999996 47887776543 3489999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=3.3e-17  Score=169.14  Aligned_cols=115  Identities=20%  Similarity=0.311  Sum_probs=99.4

Q ss_pred             CCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      .|.++..||.|+||.||++..++ +...|.|+|........++|+-||+||..++|+|||+||+.|+.++.++|++|||.
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecC
Confidence            35556779999999999998654 44567899887777778899999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||-+..++..-++ .|.+.++..+|+|+++||.|||+
T Consensus       113 GGAVDaimlEL~r-~LtE~QIqvvc~q~ldALn~LHs  148 (1187)
T KOG0579|consen  113 GGAVDAIMLELGR-VLTEDQIQVVCYQVLDALNWLHS  148 (1187)
T ss_pred             CchHhHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhh
Confidence            9998777655443 58899999999999999999975

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.64  E-value=8.4e-16  Score=148.77  Aligned_cols=117  Identities=24%  Similarity=0.406  Sum_probs=100.2

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|++.++||+|+||.||++.. .+++.|+||+++...  .....++.+|++++++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            477789999999999999975 467899999987533  23345788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+++|.+++.+.  .+..+++..++.++.||++||+|||+.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~  122 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ  122 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999988652  234589999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=5e-16  Score=156.96  Aligned_cols=119  Identities=19%  Similarity=0.323  Sum_probs=98.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-----C---CcccceeeEEEe---
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----H---RHLVSLVGYCIS---  434 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----H---pNIv~l~g~~~~---  434 (492)
                      ++|.+.++||-|.|.+||+++. ++.+.||+|+.+. ..+..+.-+.||++|++++     |   .+||+|++.|..   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKS-AqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKS-AQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEeh-hhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            5788999999999999999985 5678999999874 2344566789999999873     2   479999999985   


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 011175          435 -DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY  487 (492)
Q Consensus       435 -~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~  487 (492)
                       +.++|||+||+ |.+|..+|.....+.+......+||+||+.||+|||++|.+
T Consensus       157 NG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgI  209 (590)
T KOG1290|consen  157 NGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGI  209 (590)
T ss_pred             CCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence             34789999999 55677777766666799999999999999999999987754

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.64  E-value=1.1e-15  Score=155.14  Aligned_cols=119  Identities=22%  Similarity=0.281  Sum_probs=98.4

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRR  438 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~  438 (492)
                      ....++|...++||+|+||.||+++. .+|+.||||++....  ....+.+.+|+++|++++|+||++++++|.. .+..
T Consensus         6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   85 (328)
T cd07856           6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDI   85 (328)
T ss_pred             eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcE
Confidence            34567899999999999999999985 468899999886432  2234678899999999999999999999876 5678


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||||+ +++|..+++..   .+.+.....++.||++||+|||+..
T Consensus        86 ~lv~e~~-~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~~  128 (328)
T cd07856          86 YFVTELL-GTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSAG  128 (328)
T ss_pred             EEEeehh-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999 56898887643   3778888899999999999999753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.64  E-value=8.6e-16  Score=157.25  Aligned_cols=115  Identities=19%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC----
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD----  436 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~----  436 (492)
                      ...++|...+.||+|+||.||+++. ..++.||||+++...  ....+.+.+|+.+|+.++|+||++++++|...+    
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3457899999999999999999985 357899999997432  233457889999999999999999999986533    


Q ss_pred             --eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 --RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 --~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                        ..||||||+.+ +|..++..    .+++.++..++.||++||+|||+
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~  137 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS  137 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHh
Confidence              46999999965 56666643    37888899999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.64  E-value=1e-15  Score=153.58  Aligned_cols=113  Identities=13%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEcccC--CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      +.+.+|.|+++.||++.. +++.||||+++..  .....+.|.+|+++|++++|+||+++++++.+.+..|+||||+.+|
T Consensus         6 i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            345566667777777666 7889999999754  2334467999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|.+++++.....+++...+.++.||++||+|||++
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~  120 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK  120 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999865444588899999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.64  E-value=1.9e-15  Score=148.95  Aligned_cols=116  Identities=24%  Similarity=0.389  Sum_probs=95.5

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhC---CCCcccceeeEEEeCCe-----
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRI---HHRHLVSLVGYCISDDR-----  437 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l---~HpNIv~l~g~~~~~~~-----  437 (492)
                      |++.++||+|+||.||+|++. +++.||||+++.....  ...++.+|+++++++   +|+||++++++|.+.+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            566789999999999999975 4889999999743322  234677888877666   69999999999998777     


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .+|||||+. ++|.+++.......+++.+++.++.||++||+|||+..
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~  127 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR  127 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            899999997 57988887654445899999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.64  E-value=1.3e-15  Score=156.46  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD------  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------  435 (492)
                      ..++|.+.++||+|+||.||+++. ..++.||||+++...  ....+++.+|+.+|+.++|+||++++++|...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            356799999999999999999985 357889999997432  23346788999999999999999999988643      


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ...||||||+.+ +|.+++..    .+++.+++.++.||++||+|||+
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~  144 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS  144 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhh
Confidence            356999999965 67766643    37888999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.64  E-value=7e-16  Score=150.23  Aligned_cols=117  Identities=22%  Similarity=0.298  Sum_probs=95.2

Q ss_pred             CCCccceeccCCceeEEEEEcCC-CCEEEEEEccc---CC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKI---GG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~---~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +|.+.++||+|+||.||++.+.. +..+++|+++.   ..  .....++.+|++++++++|+||+++++++.+.+..+||
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            47778999999999999998633 44455665542   11  12334678899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+++|.++++.  .....+++.+++.++.||++||+|||+.
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  125 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR  125 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999988864  2234689999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.64  E-value=1.2e-17  Score=155.62  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=99.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .+.|++.++||+|.|..||++.. ..|+.+|+|+++...  ..+.+++.+|++|.+.|+|+|||+|++.+.+....|||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            45677778999999999999874 468899999886432  345678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.||+|+.-+..+  ..+++...-+++.||+++|+|+|.+
T Consensus        90 e~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n  129 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSN  129 (355)
T ss_pred             ecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999997666443  4578888889999999999999754

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.64  E-value=1.6e-15  Score=152.40  Aligned_cols=110  Identities=25%  Similarity=0.401  Sum_probs=88.2

Q ss_pred             cceeccCCceeEEEEEcC---CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEEEecCC
Q 011175          372 QNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIYDYVP  446 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV~Ey~~  446 (492)
                      .++||+|+||.||+|+..   +++.||||+++...  ....+.+|+++|++|+|+||++++++|..  +...||||||+.
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            367999999999999854   45789999986432  23568899999999999999999999864  456789999996


Q ss_pred             CCCHHHHHhcC-------CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGE-------GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~-------~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       ++|++++...       ....+.+.....|+.||++||+|||++
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~  127 (317)
T cd07868          84 -HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN  127 (317)
T ss_pred             -CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence             5787776432       122478888999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.64  E-value=3.2e-15  Score=146.86  Aligned_cols=119  Identities=24%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             HHHHHHhcCCCcccee--ccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          360 EELVKATDGFADQNLL--GEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~L--G~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++....++|.+.+.+  |+|+||.||+++. .+++.+|+|+++.......     |+.++..+ +|+||++++++|...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecC
Confidence            3445555667766666  9999999999985 4578899999864322111     22222222 799999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +..|+||||+.+|+|.+++..+.  .++|.+++.++.||++||+|||+.+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~  129 (267)
T PHA03390         82 KGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHN  129 (267)
T ss_pred             CeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999997654  5899999999999999999999754

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.64  E-value=1.5e-15  Score=155.00  Aligned_cols=122  Identities=17%  Similarity=0.275  Sum_probs=100.1

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      .+++....++|.+.+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.+|++++++++|+||++++++|...
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~   88 (345)
T cd07877           9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA   88 (345)
T ss_pred             HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeec
Confidence            455666778999999999999999999985 468899999997432  22345788999999999999999999988643


Q ss_pred             ------CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 ------DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                            +..|+|+||+ +++|.+++..+   .+.+..++.|+.||++||+|||+.
T Consensus        89 ~~~~~~~~~~lv~~~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~  139 (345)
T cd07877          89 RSLEEFNDVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSA  139 (345)
T ss_pred             ccccccccEEEEehhc-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence                  3467888877 78998877543   389999999999999999999864

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.64  E-value=1e-15  Score=155.32  Aligned_cols=115  Identities=18%  Similarity=0.285  Sum_probs=96.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~  439 (492)
                      ++|++.++||+|+||.||+|.. .+|+.||||+++....  ...+.+.+|+.+|++|+|+||++++++|..    ....|
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            6788889999999999999985 4588999999875322  334578899999999999999999998863    34679


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+. |+|.++++...  .+++...+.++.||++||+|||++
T Consensus        85 lv~e~~~-~~l~~~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~  126 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQ--PLTEEHIRYFLYQLLRGLKYIHSA  126 (334)
T ss_pred             EEEehhh-hhHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999995 68988886543  389999999999999999999874

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.63  E-value=1.4e-15  Score=150.55  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=94.1

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|...++||+|+||.||+++. .+++.||||+++.... ....+|.+|+.+|.++. |+||++++|++...+..++||||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            344567899999999999985 4588999999975432 33457999999999996 99999999999999999999999


Q ss_pred             CCCC--CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNN--TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~G--sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +...  +|..++.......+.+...++++.||++||+|||+++
T Consensus        85 ~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~  127 (288)
T cd06616          85 MDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEEL  127 (288)
T ss_pred             ccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            8642  3333333333345899999999999999999998753

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.63  E-value=2.4e-16  Score=151.31  Aligned_cols=125  Identities=24%  Similarity=0.336  Sum_probs=98.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-----CCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEe-CCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCIS-DDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-----g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~  437 (492)
                      ...|+.++.||+|.||.||++...+     .+.+|||+++.....  -...-.+||.++++|+|+|||.|+.+|.+ +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            3568888999999999999996422     236899999854321  12467899999999999999999999988 778


Q ss_pred             EEEEEecCCCCCHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGE---GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~---~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ++||+||+++ ||+.+++..   ..+.+.......|+.||+.||.|||+      |.|+.+|+
T Consensus       103 v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIl  164 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANIL  164 (438)
T ss_pred             EEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEE
Confidence            8999999977 576666432   22457778888999999999999964      66666665

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.63  E-value=2.7e-15  Score=148.38  Aligned_cols=109  Identities=27%  Similarity=0.322  Sum_probs=87.7

Q ss_pred             eeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHH---HhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          374 LLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEII---SRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il---~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      +||+|+||.||++.. .+++.||||+++....   .....+.+|..++   ...+|+||+++++++...+..++||||+.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999986 4588999999864322   1123344554433   34579999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++...+  .+.+...+.|+.||++||+|||+.
T Consensus        81 ~~~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~  116 (279)
T cd05633          81 GGDLHYHLSQHG--VFSEKEMRFYATEIILGLEHMHNR  116 (279)
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999887543  489999999999999999999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.63  E-value=3.1e-15  Score=150.20  Aligned_cols=109  Identities=24%  Similarity=0.398  Sum_probs=87.5

Q ss_pred             ceeccCCceeEEEEEcC---CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|+..   +++.||||+++...  ....+.+|+++|++|+|+||++++++|..  +...||||||+.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            67999999999999864   34689999986432  23568899999999999999999999864  4577899999875


Q ss_pred             CCHHHHHhcC-------CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGE-------GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~-------~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       +|++++...       ....+.+..++.|+.||++||+|||+.
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~  127 (317)
T cd07867          85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN  127 (317)
T ss_pred             -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC
Confidence             677666421       123478888999999999999999863

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.62  E-value=1.8e-15  Score=153.75  Aligned_cols=115  Identities=18%  Similarity=0.334  Sum_probs=95.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC--CCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCC--eEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD--RRL  439 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~--~~~  439 (492)
                      .++|++.++||+|+||.||+|.+. +|+.||||++...  .......+.+|++++++| +|+||++++|+|...+  ..|
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            456788899999999999999864 5788999988542  223345688999999999 9999999999987543  579


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+. ++|..++..+   .++|..++.|+.||++||+|||+.
T Consensus        86 lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~  126 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSG  126 (337)
T ss_pred             EEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999997 5898888654   588999999999999999999863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.62  E-value=2.5e-15  Score=152.61  Aligned_cols=116  Identities=20%  Similarity=0.324  Sum_probs=96.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~  438 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++... ......+.+|+.+|++++|+||+++++++...+     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            36788999999999999999985 468899999986432 233457889999999999999999999877543     47


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||||+. ++|..++...   .+.+..+..++.||++||+|||++.
T Consensus        84 ~lv~e~~~-~~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~~~  126 (336)
T cd07849          84 YIVQELME-TDLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSAN  126 (336)
T ss_pred             EEEehhcc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999996 4888777543   4899999999999999999998743

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-16  Score=175.08  Aligned_cols=133  Identities=23%  Similarity=0.269  Sum_probs=108.7

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      .++....++|.++++||+|+||.|++.+++ .++.||+|+|+++..   .+...|+.|-+||..-+...||+|...|.++
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            445555688999999999999999999864 477899999986432   2335699999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHH----HHHHHHHHHHHHHhhcCCCCceeeC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR----VKIAAGAARGLAYLHEDCKYLIFCF  492 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~----l~ia~qIa~gL~YLH~~~k~~ii~~  492 (492)
                      +++|||||||.||||..+|.+.++..-+|...    +-+|++-++-|.|+|+|+|+-+|++
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLl  208 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLL  208 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEe
Confidence            99999999999999999997655322344433    3457777888999999999998874

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=3.7e-15  Score=145.10  Aligned_cols=110  Identities=25%  Similarity=0.222  Sum_probs=90.0

Q ss_pred             ceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHH-HhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEII-SRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il-~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      +.||+|+||.||+|.. .+|+.||||+++....   .....+..|..++ ..++|+||++++++|.+++..||||||+.+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5699999999999986 4588999999864322   1223455565544 456899999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+|.+++...+  .+.+..+.+|+.||++||+|||+.
T Consensus        82 ~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~  116 (260)
T cd05611          82 GDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQR  116 (260)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987543  478889999999999999999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.62  E-value=1.7e-15  Score=153.19  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=97.9

Q ss_pred             CCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~~  439 (492)
                      +|.+.++||+|+||.||+|+.. +|+.||||++....  ....+.|.+|+++|++++|+||++++|++...+     ..|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4778899999999999999964 48899999987543  334467999999999999999999999998775     789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||+. ++|.+++++..  .+++..++.|+.||++||+|||+.
T Consensus        81 lv~e~~~-~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~  122 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSA  122 (330)
T ss_pred             EEecchh-hhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998 58988886544  589999999999999999999874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.62  E-value=5.2e-15  Score=148.87  Aligned_cols=115  Identities=24%  Similarity=0.400  Sum_probs=95.9

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |...+.||+|+||.||+|+. .+|+.|+||++.....   ...+++.+|+++|++++|+||++++++|.+.+..||||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            55567899999999999985 4588999999864332   2235688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +. |+|.+++.... ..+.+.+++.++.||++||+|||+.+
T Consensus       103 ~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~g  141 (313)
T cd06633         103 CL-GSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHN  141 (313)
T ss_pred             CC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            95 67877775433 34899999999999999999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.62  E-value=1.9e-15  Score=154.04  Aligned_cols=114  Identities=22%  Similarity=0.306  Sum_probs=97.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC----------
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD----------  435 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~----------  435 (492)
                      ++|...+.||+|+||.||+|+. .+|+.||||++........+.+.+|+++|++++|+||+++++++...          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5688889999999999999986 45889999999766555667899999999999999999999876643          


Q ss_pred             ----CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 ----DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ----~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                          +..|+||||+. ++|.+++...   .+.+...+.++.||++||+|||+.
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~  133 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSA  133 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC
Confidence                35789999997 5898887543   378999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.62  E-value=2.7e-15  Score=152.56  Aligned_cols=115  Identities=16%  Similarity=0.272  Sum_probs=96.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-----eE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-----~~  438 (492)
                      ++|...++||+|+||.||+|+. .+++.||||+++...  ......+.+|+.+|++++|+||+++++++...+     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            5688889999999999999985 468899999987432  233456889999999999999999999887543     47


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||||+. ++|.+++...+  .+.+...+.|+.||++||+|||++
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~  127 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIHSA  127 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999996 78988886543  489999999999999999999874

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.62  E-value=3e-15  Score=149.04  Aligned_cols=117  Identities=21%  Similarity=0.356  Sum_probs=95.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCC-cchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|++.+.||+|+||.||+|.+.+ ++.||||+++.... ....++.+|++++.+++ |+||++++|+|.+.+..|+||
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   93 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICM   93 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEe
Confidence            3567788999999999999999754 88999999975433 23456778888777775 999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+. ++|.+++.... ..+++..+++|+.||++||+|||++
T Consensus        94 e~~~-~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~  133 (296)
T cd06618          94 ELMS-TCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEK  133 (296)
T ss_pred             eccC-cCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9985 46766654422 3589999999999999999999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.61  E-value=3.9e-15  Score=146.45  Aligned_cols=114  Identities=21%  Similarity=0.357  Sum_probs=97.3

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      |...+.||+|+||.||+|+.. +|+.|+||+++.....  ..+.+.+|+++|++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            456688999999999999864 6888999998754332  3467899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+ +|..++.... ..+++.+++.++.||++||+|||+.
T Consensus        81 ~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~  117 (283)
T cd05118          81 DT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSH  117 (283)
T ss_pred             CC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            75 8888876543 3589999999999999999999864

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.61  E-value=8.6e-15  Score=138.37  Aligned_cols=115  Identities=28%  Similarity=0.401  Sum_probs=101.2

Q ss_pred             CCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      |.+.+.||+|+||.||++...+ ++.|+||.+...... ..+.|.+|++++++++|.||+++++++...+..++|+||+.
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            4567889999999999999755 789999999865544 56789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++|.+++...... +++.+...++.+++++|+|||+.
T Consensus        81 ~~~L~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~  117 (225)
T smart00221       81 GGDLFDYLRKKGGK-LSEEEARFYLRQILEALEYLHSL  117 (225)
T ss_pred             CCCHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998764322 78999999999999999999975

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.61  E-value=4e-15  Score=143.61  Aligned_cols=107  Identities=31%  Similarity=0.395  Sum_probs=94.3

Q ss_pred             eccCCceeEEEEEcC-CCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      ||+|+||.||++... +++.||||+++.....   ....+.+|++++++++|+||+++++++..++..++||||+.+++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            799999999999864 4889999998754322   345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++....  .+++.....++.||++||+|||+
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~  111 (250)
T cd05123          81 FSHLSKEG--RFSEERARFYAAEIVLALEYLHS  111 (250)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99997653  48999999999999999999986

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.60  E-value=5.8e-15  Score=148.15  Aligned_cols=114  Identities=25%  Similarity=0.426  Sum_probs=94.9

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |+..+.||+|+||.||+|+. .+++.||||.+.....   ...++|.+|+++|++++|+||++++++|...+..+|||||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            55568899999999999986 4578899999864322   2335788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +. |+|.+++.... ..+++.+++.++.||+.||+|||++
T Consensus        97 ~~-~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~  134 (308)
T cd06634          97 CL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH  134 (308)
T ss_pred             cC-CCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            96 67877775433 3478999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.60  E-value=5.8e-15  Score=151.11  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeC------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD------  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------  435 (492)
                      ..++|+..+.||+|+||.||+|+. .+|+.||||+++...  ....+++.+|+++|++++|+||++++++|...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            457799999999999999999985 468899999986432  23345788999999999999999999998644      


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ...||||||+. |+|.+++...    +++.++..++.||++||+|||++
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~~----l~~~~~~~~~~ql~~aL~~LH~~  137 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQMD----LDHERMSYLLYQMLCGIKHLHSA  137 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHhC
Confidence            34699999995 5788877532    78888999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.60  E-value=7.4e-15  Score=145.06  Aligned_cols=109  Identities=28%  Similarity=0.333  Sum_probs=87.9

Q ss_pred             eeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHH---HHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          374 LLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVE---IISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~---il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      +||+|+||.||+++. .+++.||||++.....   .....+.+|..   +++..+|+||+++++++.+.+..++||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999985 3588999999864322   11223444543   4445689999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++...+  .+.+.+++.|+.|+++||+|||+.
T Consensus        81 g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~  116 (278)
T cd05606          81 GGDLHYHLSQHG--VFSEAEMRFYAAEIILGLEHMHNR  116 (278)
T ss_pred             CCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999998886543  489999999999999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.60  E-value=3.6e-15  Score=146.61  Aligned_cols=114  Identities=25%  Similarity=0.376  Sum_probs=98.1

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      |...++||+|.||.||+|+.. +++.||||+++...  ....+.+.+|++++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            455688999999999999965 48899999997543  223467889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      . ++|.+++.+.. ..+++..+++++.||++||+|||++
T Consensus        81 ~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~  117 (282)
T cd07829          81 D-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSH  117 (282)
T ss_pred             C-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            8 58999987653 3489999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.60  E-value=6.3e-15  Score=150.20  Aligned_cols=115  Identities=20%  Similarity=0.274  Sum_probs=94.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|...+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|+||++++++|...+      
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36788899999999999999985 468899999986432  222356889999999999999999999987543      


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ..|+||||+.+ +|..++.    ..+.+..+..++.||++||+|||+++
T Consensus        94 ~~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~  137 (342)
T cd07879          94 DFYLVMPYMQT-DLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAG  137 (342)
T ss_pred             eEEEEeccccc-CHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            46899999964 7766652    23788999999999999999998753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=5.4e-15  Score=150.85  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=85.8

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC--CCCEEEEEEcccCC-----CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~--~g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      ...++|.+.++||+|+||+||+|++.  +++.||||++....     ....+.|.+|+++|++|+|.||+..+..   .+
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~   91 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TG   91 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cC
Confidence            34577999999999999999999864  46778999875321     1124569999999999999999854332   25


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CC-CCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DC-KYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~-k~~ii~  491 (492)
                      ..|||||||.+++|+. +...     .   ...++.||++||+|||+      |+ |..+|+
T Consensus        92 ~~~LVmE~~~G~~L~~-~~~~-----~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NIL  144 (365)
T PRK09188         92 KDGLVRGWTEGVPLHL-ARPH-----G---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWL  144 (365)
T ss_pred             CcEEEEEccCCCCHHH-hCcc-----c---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEE
Confidence            6799999999999973 2111     1   14577889999999975      45 565554

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=4.5e-16  Score=150.18  Aligned_cols=117  Identities=27%  Similarity=0.329  Sum_probs=100.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..++|+.+++||+|.||+|.+++- ..|+.+|+|+|++....   +...-+.|-++|++.+|+.+..|...|...+.+|+
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCF  245 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCF  245 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEE
Confidence            346788889999999999999974 46899999999865332   23446788999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.||.|+.+|.+.  +.+++.+...+...|..||.|||+
T Consensus       246 VMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs  286 (516)
T KOG0690|consen  246 VMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHS  286 (516)
T ss_pred             EEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhh
Confidence            99999999999988654  358888888899999999999997

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=2.4e-15  Score=156.99  Aligned_cols=119  Identities=24%  Similarity=0.336  Sum_probs=99.2

Q ss_pred             ceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          373 NLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      -+||+|.||+||-|+..+ ...+|||.+...+..+.+-+.+||.+.++|+|.|||+++|.|.+++++.|+||-+.||+|.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            469999999999999644 5578999998766666677899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCC-CHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          452 FHLHGEGRPVL-DWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       452 ~~l~~~~~~~l-~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ++|+......- .+...-.+..||++||.|||+      |||.-+++
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVL  707 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVL  707 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEE
Confidence            99986543222 455666789999999999964      66665543

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.59  E-value=6.1e-15  Score=147.23  Aligned_cols=117  Identities=24%  Similarity=0.349  Sum_probs=95.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|.+.++||+|+||.||+|+.. +++.||||++......  ....+.+|+++|++++|+||+++++++.+..      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            467899999999999999999864 5889999998644322  2346889999999999999999999886543      


Q ss_pred             --eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 --RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 --~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                        .+++||||+.+ +|..+++... ..+++.+++.|+.||++||+|||+.
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~  134 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHEN  134 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhC
Confidence              46999999975 6777766433 3589999999999999999999874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.59  E-value=3.2e-15  Score=160.29  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=87.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC--CCEEEEEE--------------c-c--cCCCcchHHHHHHHHHHHhCCCCcc
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD--GREVAIKQ--------------L-K--IGGGQGEREFKAEVEIISRIHHRHL  425 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~--g~~VAVK~--------------l-~--~~~~~~~~~f~~Ei~il~~l~HpNI  425 (492)
                      ..++|.++++||+|+||+||+|.++.  ++.+++|.              + +  .......+.|.+|+++|++|+|+||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            35789999999999999999987532  22222221              1 0  0111223568899999999999999


Q ss_pred             cceeeEEEeCCeEEEEEecCCCCCHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEG---RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       426 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~---~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |++++++.+.+..|||+||+. ++|++++....   .....+.+.++|+.||++||+|||+
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~  285 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD  285 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999995 57777775432   1123355667899999999999975

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.58  E-value=2.1e-15  Score=154.95  Aligned_cols=119  Identities=20%  Similarity=0.272  Sum_probs=97.3

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCC--------cchHHHHHHHHHHHhCC---CCcccceee
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG--------QGEREFKAEVEIISRIH---HRHLVSLVG  430 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~--------~~~~~f~~Ei~il~~l~---HpNIv~l~g  430 (492)
                      .+...+|...+.||+|+||+|++|.++. ...|+||.|.+...        .+....-.||.||..|+   |+||+++++
T Consensus       557 ~~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLd  636 (772)
T KOG1152|consen  557 YKKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLD  636 (772)
T ss_pred             ecccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhh
Confidence            3445668888999999999999999754 56799998864321        11224567999999997   999999999


Q ss_pred             EEEeCCeEEEEEecC-CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          431 YCISDDRRLLIYDYV-PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       431 ~~~~~~~~~lV~Ey~-~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|++++++||+||-. ++-||++++..+.  .+++.....|+.||+.|.++||+
T Consensus       637 fFEddd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~  688 (772)
T KOG1152|consen  637 FFEDDDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHD  688 (772)
T ss_pred             eeecCCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhccccccc
Confidence            999999999999965 4678999996544  48999999999999999999975

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.3e-15  Score=152.74  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=109.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .+.|..-++||+|+||+||-++. ..|+.+|+|+|.+..   .+.+..-++|-.||.+++.+.||.|-..|+..+.++||
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            35677789999999999999985 458999999885332   22334577899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      |..|.||||+.+|.+.+...+++.+.+.+|.+|+.||++||+      |+|+.+|+|
T Consensus       264 LtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILL  320 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILL  320 (591)
T ss_pred             EEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheee
Confidence            999999999999987776779999999999999999999995      677777764

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.57  E-value=9.9e-15  Score=136.49  Aligned_cols=107  Identities=14%  Similarity=0.128  Sum_probs=79.6

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--c-------hHH-----------------HHHHHHHHHhCCCCcc
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--G-------ERE-----------------FKAEVEIISRIHHRHL  425 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~-------~~~-----------------f~~Ei~il~~l~HpNI  425 (492)
                      .++||+|+||.||+|...+|+.||||+++.....  .       ...                 ..+|+++|.+|+|.+|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4679999999999999878999999999753211  1       112                 2349999999998887


Q ss_pred             cceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       426 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      .....+..  ...+|||||+.+++|...+...  ..+++.+.++++.||+++|+|||
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~  134 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILY  134 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            54433322  2348999999998876553322  24788999999999999999984

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.56  E-value=1.2e-14  Score=148.35  Aligned_cols=115  Identities=20%  Similarity=0.328  Sum_probs=96.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-----
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-----  437 (492)
                      .++|...+.||+|+||.||+|+.. +++.||||+++...  ....+.+.+|++++++++|+||+++++++...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            467888999999999999999864 57889999986432  2234568899999999999999999998876654     


Q ss_pred             -EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 -RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 -~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       .+||+||+ +++|.+++...   .+++..++.++.||++||+|||+.
T Consensus        94 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~~  137 (343)
T cd07851          94 DVYLVTHLM-GADLNNIVKCQ---KLSDDHIQFLVYQILRGLKYIHSA  137 (343)
T ss_pred             cEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence             89999999 67998888642   489999999999999999999874

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.56  E-value=1.7e-15  Score=144.95  Aligned_cols=122  Identities=20%  Similarity=0.275  Sum_probs=102.4

Q ss_pred             hcCCCc-cceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe----CCeE
Q 011175          366 TDGFAD-QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS----DDRR  438 (492)
Q Consensus       366 ~~~~~~-~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~----~~~~  438 (492)
                      +++|.+ .++||-|-.|.|..+.. ..++.+|+|+|..     ...-++|+++.-.. .|+|||+++++|+.    ...+
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL  134 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL  134 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence            445544 47899999999999985 4588999999863     34567899876665 69999999999874    3456


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +||||+|+||+|+..+.+++.+.+++.+.-.|+.||+.|++|||      +|.|+.+++|
T Consensus       135 LiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLy  194 (400)
T KOG0604|consen  135 LIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLY  194 (400)
T ss_pred             EeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheee
Confidence            89999999999999999888888999999999999999999995      6899988876

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.56  E-value=3.1e-14  Score=144.39  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             CCCccceeccCCceeEEEEEcC-C--CCEEEEEEcccCCC--cchHHHHHHHHHHHhC-CCCcccceeeEEEeC----Ce
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP-D--GREVAIKQLKIGGG--QGEREFKAEVEIISRI-HHRHLVSLVGYCISD----DR  437 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~-~--g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~----~~  437 (492)
                      +|.+.++||+|+||.||+++.. +  ++.||||+++....  ...+.+.+|+++++++ +|+||+++++++...    +.
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4777899999999999999864 3  67899999864322  2345788999999999 599999999986543    45


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .|++|||+. ++|.+++....  .+++..++.++.||++||+|||+.
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~  124 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQ--PLTDAHFQSFIYQILCGLKYIHSA  124 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            688899986 68988886543  489999999999999999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.55  E-value=6.2e-16  Score=161.19  Aligned_cols=125  Identities=23%  Similarity=0.361  Sum_probs=108.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ..++|++...||.|.||.|||++. ..++..|||+++.....+..-+.+||.+|+..+|+|||.++|-+...+.++|.||
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME   92 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME   92 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence            346788889999999999999985 4588899999998777777778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|.+..|..+  .|++.+...+++..++||+|||+      |+|..+|+
T Consensus        93 ycgggslQdiy~~Tg--plselqiayvcRetl~gl~ylhs~gk~hRdiKGanil  144 (829)
T KOG0576|consen   93 YCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANIL  144 (829)
T ss_pred             ecCCCcccceeeecc--cchhHHHHHHHhhhhccchhhhcCCccccccccccee
Confidence            999999998877654  48889999999999999999965      45555554

>PRK10345 hypothetical protein; Provisional

Probab=99.55  E-value=3.8e-14  Score=134.25  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=86.8

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-----CCCcccceeeEEEeCC---eEE-
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-----HHRHLVSLVGYCISDD---RRL-  439 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-----~HpNIv~l~g~~~~~~---~~~-  439 (492)
                      +...++||+|+||.||+ .-.++.. +||++........+++.+|+++|++|     +|+||++++|+++++.   ..+ 
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            34468899999999996 3334444 69988765445567899999999999     6799999999999864   334 


Q ss_pred             EEEec--CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHH-HHhh------cCCCCceeeC
Q 011175          440 LIYDY--VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGL-AYLH------EDCKYLIFCF  492 (492)
Q Consensus       440 lV~Ey--~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL-~YLH------~~~k~~ii~~  492 (492)
                      +||||  +.+|+|.+++.+. +  +++.  ..++.|++.++ +|||      +|+|..||+|
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~-~--~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl  138 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC-R--YEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILC  138 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc-c--ccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEE
Confidence            78999  5589999999653 2  5544  35577778777 8986      4666666553

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.55  E-value=6.3e-15  Score=139.39  Aligned_cols=128  Identities=21%  Similarity=0.312  Sum_probs=106.4

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc----c----hHHHHHHHHHHHhC-CCCcccceeeEE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ----G----EREFKAEVEIISRI-HHRHLVSLVGYC  432 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~----~----~~~f~~Ei~il~~l-~HpNIv~l~g~~  432 (492)
                      ....++|...++||.|....|.++.. ..|+++|+|+|......    .    .+.-++|+.||+++ .|+||++|.++|
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~y   92 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVY   92 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeec
Confidence            34456788889999999999988875 45889999999643321    1    23467899999998 799999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       433 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +.+..+|+|+|+|..|.|++||...-  .+++....+|+.|+.+|++|||      +|.|+.+|++
T Consensus        93 es~sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILl  156 (411)
T KOG0599|consen   93 ESDAFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILL  156 (411)
T ss_pred             cCcchhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheee
Confidence            99999999999999999999997643  5899999999999999999985      6888877764

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.54  E-value=2e-15  Score=167.31  Aligned_cols=125  Identities=25%  Similarity=0.386  Sum_probs=106.1

Q ss_pred             hcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +-+|+...+||.|.||.||-|. ..+|+..|||.++.+....  ...+.+|+.+|..|+|+|||+++|+-.+.+..+|.|
T Consensus      1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            3457778899999999999998 5678999999998665442  346889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||++|+|.+.+...+  .+++.....+..|++.|++|||      +|+|..+|.|
T Consensus      1314 EyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~L 1367 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILL 1367 (1509)
T ss_pred             HHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceee
Confidence            9999999999986543  3677777778899999999995      5778877754

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.53  E-value=1.4e-13  Score=127.55  Aligned_cols=109  Identities=31%  Similarity=0.490  Sum_probs=95.5

Q ss_pred             eccCCceeEEEEEcCC-CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHHH
Q 011175          375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYF  452 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~  452 (492)
                      ||+|.||.||++...+ ++.++||++...... ..+.|.+|++++++++|.||+++++++...+..++||||+.+++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999754 889999999754332 34679999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          453 HLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       453 ~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++.... ..+++..++.++.+++++|+|||+.
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~  111 (215)
T cd00180          81 LLKENE-GKLSEDEILRILLQILEGLEYLHSN  111 (215)
T ss_pred             HHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            987542 3488999999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.53  E-value=8.3e-14  Score=130.22  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCc---------------------c-----hHHHHHHHHHHHhCCCCcc
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---------------------G-----EREFKAEVEIISRIHHRHL  425 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~---------------------~-----~~~f~~Ei~il~~l~HpNI  425 (492)
                      .+.||+|+||.||+|+..+|+.||||+++.....                     .     ...+.+|++.|.+|+|.+|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999778999999999754211                     0     1124688999999999998


Q ss_pred             cceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc-------CCCCceee
Q 011175          426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE-------DCKYLIFC  491 (492)
Q Consensus       426 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~-------~~k~~ii~  491 (492)
                      .....+...  ..||||||+.++++...+..+.  .++..+.++|+.|++++|.|||+       |+|+.+|+
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~--~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIl  150 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDV--PLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNIL  150 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhc--cCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEE
Confidence            655554433  2489999999886543322222  36778889999999999999976       45555554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.9e-14  Score=149.16  Aligned_cols=122  Identities=20%  Similarity=0.241  Sum_probs=96.8

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      -|..++.||-|+||+|.++.. +....+|+|.|++.+.   ......+.|-+||.+.+...||+||..|.+.+.+|+|||
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            477788999999999999874 3456789999975442   223457889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHH------HHHHHHhhcCCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGA------ARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qI------a~gL~YLH~~~k~~ii~  491 (492)
                      |+.|||+..+|.+-+  .|.+..+..++..+      .+-|.|+|+|+|..+|+
T Consensus       710 YIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNIL  761 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNIL  761 (1034)
T ss_pred             ccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHhccceecccCccceE
Confidence            999999999987654  35555444444444      45566678999998886

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.50  E-value=1.7e-13  Score=130.45  Aligned_cols=104  Identities=27%  Similarity=0.397  Sum_probs=92.4

Q ss_pred             CceeEEEEEcC-CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011175          379 GFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       379 ~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~  456 (492)
                      +||.||+|++. +|+.|++|++....... .+.|.+|++++++++|.||++++|+|...+..++||||+.+++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999975 48899999997655444 67899999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          457 EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       457 ~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ...  +++.++++++.+|++||+|||+.
T Consensus        81 ~~~--~~~~~~~~~~~~l~~~l~~lh~~  106 (244)
T smart00220       81 RGR--LSEDEARFYARQILSALEYLHSN  106 (244)
T ss_pred             ccC--CCHHHHHHHHHHHHHHHHHHHHc
Confidence            543  88999999999999999999874

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.49  E-value=1.1e-13  Score=133.46  Aligned_cols=100  Identities=20%  Similarity=0.187  Sum_probs=85.7

Q ss_pred             CCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011175          378 GGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (492)
Q Consensus       378 G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~  456 (492)
                      |.||.||+++. .+++.||+|+++..     .++.+|...+....|+||+++++++.+.+..+|||||+.+|+|++++.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS-----SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch-----hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            89999999985 46889999999743     2455666667777899999999999999999999999999999999875


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          457 EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       457 ~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..  .+.+...+.++.||++||+|||+.
T Consensus        79 ~~--~l~~~~~~~~~~ql~~~l~~lH~~  104 (237)
T cd05576          79 FL--NIPEECVKRWAAEMVVALDALHRE  104 (237)
T ss_pred             hc--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            43  389999999999999999999863

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.3e-14  Score=158.28  Aligned_cols=67  Identities=34%  Similarity=0.561  Sum_probs=55.5

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceee
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVG  430 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g  430 (492)
                      +..++|+..++||+|+||.||+++- -||+.||||+|..... .....+.+|+++|++|+|+|||+++.
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYys  544 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYS  544 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeeh
Confidence            3456677789999999999999983 3899999999976542 22357889999999999999999876

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=9.8e-14  Score=142.39  Aligned_cols=125  Identities=18%  Similarity=0.249  Sum_probs=103.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCC--CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ...|+++++||+|+..+||+++..+.+.+|+|++....  ......|++||.+|.+| .|.+||+||+|-..++.+||||
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm  439 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM  439 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence            34578889999999999999998788889988876433  33456799999999999 5999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||- +.||..+|........+| .+..|-.|++.++.|+|      .|.|+.+|+|
T Consensus       440 E~G-d~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl  493 (677)
T KOG0596|consen  440 ECG-DIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL  493 (677)
T ss_pred             ecc-cccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHhceeecCCCcccEEE
Confidence            987 568999998777666667 55667899999999986      4666666654

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.47  E-value=6.5e-14  Score=138.24  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=104.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC------cccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR------HLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp------NIv~l~g~~~~~~~~  438 (492)
                      .++|.+..+||+|.||+|.+++.. .+..||||+++.- ....+.-+-||++|.+|++.      .+|.+.+||...+..
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi  166 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI  166 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence            677899999999999999999853 3688999999732 23345567899999999432      367888889999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      +||+|.| |-+++++|..++...+...+...|+.|++++|+|||+      |.|+.+|||
T Consensus       167 Civfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILf  225 (415)
T KOG0671|consen  167 CIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILF  225 (415)
T ss_pred             EEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEE
Confidence            9999998 6689999988777778899999999999999999975      789999987

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.46  E-value=8.9e-15  Score=138.26  Aligned_cols=117  Identities=26%  Similarity=0.449  Sum_probs=101.5

Q ss_pred             CccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      .+..+|.+...|+.|+|+| .|..+++|+|+....  ...++|.+|.-.|+-+.|+||+.++|.|....++.+|..||..
T Consensus       193 nl~tkl~e~hsgelwrgrw-qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~  271 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRW-QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPF  271 (448)
T ss_pred             hhhhhhccCCCcccccccc-cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccc
Confidence            3446688999999999999 566788888875433  3346899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY  487 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~  487 (492)
                      |+|+..||+...-.++..+.+++|++||+||+|||+-..+
T Consensus       272 gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~  311 (448)
T KOG0195|consen  272 GSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPM  311 (448)
T ss_pred             hHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchh
Confidence            9999999988777789999999999999999999985443

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.44  E-value=1.4e-14  Score=136.63  Aligned_cols=123  Identities=19%  Similarity=0.286  Sum_probs=97.1

Q ss_pred             CccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHH-HHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          370 ADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEI-ISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~i-l~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      +.++.||.|+||.|+|-+++ .|+..|||+|+..+. .+.++|+.|.+. |+.-+.+|||+|+|.+..++..||-||+|.
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            33477999999999998764 589999999986655 445679999885 555689999999999999999999999995


Q ss_pred             CC--CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh-------hcCCCCceeeC
Q 011175          447 NN--TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL-------HEDCKYLIFCF  492 (492)
Q Consensus       447 ~G--sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL-------H~~~k~~ii~~  492 (492)
                      -.  -|+.+++.-.+..+.+...-+|+..+.+||+||       |+|+|+.+|++
T Consensus       147 ~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILl  201 (361)
T KOG1006|consen  147 ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILL  201 (361)
T ss_pred             hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEE
Confidence            32  134444444444578888788888889999997       89999988874

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.43  E-value=8.5e-13  Score=124.91  Aligned_cols=104  Identities=16%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++||+|+||.||+|.+ +|..|+||++......        ....+.+|+++|.+++|.||.....+|.+.+..+|||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5799999999999988 7778999986532211        123588999999999999998888888888889999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.|++|.+++...     .+ .++.++.+|+++|+|||+
T Consensus        81 ~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~  113 (211)
T PRK14879         81 IEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHS  113 (211)
T ss_pred             eCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHh
Confidence            9999999988643     22 778899999999999986

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=7e-15  Score=137.68  Aligned_cols=115  Identities=23%  Similarity=0.434  Sum_probs=89.2

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEe--------C
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCIS--------D  435 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--------~  435 (492)
                      +.|+...+||+|.||+||+++.+ .|+.||+|++...+.+  .-..-++|++||..|+|+||+.|+++|..        .
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            34555578999999999999864 4778999877533222  22467899999999999999999999864        2


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..+||||+||++ ||+-+|.+. +..++..++.+++.++..||.|+|+
T Consensus        97 ~t~ylVf~~ceh-DLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iHr  142 (376)
T KOG0669|consen   97 ATFYLVFDFCEH-DLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIHR  142 (376)
T ss_pred             ceeeeeHHHhhh-hHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHHH
Confidence            247999999976 687777543 3458888889999999999998754

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.42  E-value=8.8e-13  Score=123.68  Aligned_cols=108  Identities=18%  Similarity=0.250  Sum_probs=82.7

Q ss_pred             eeccCCceeEEEEEcCCCCEEEEEEcccCCCc--------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +||+|+||.||+|.+ +|+.|+||++......        ..+.+.+|+++|.+++|.||.....++.+.+..+|||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 6788999986532211        1245789999999999988766666667777889999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .|++|.+++.....         .++.+|+++|+|||+      |.+..+|+
T Consensus        80 ~g~~l~~~~~~~~~---------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil  122 (199)
T TIGR03724        80 EGKPLKDVIEEGND---------ELLREIGRLVGKLHKAGIVHGDLTTSNII  122 (199)
T ss_pred             CCccHHHHHhhcHH---------HHHHHHHHHHHHHHHCCeecCCCCcceEE
Confidence            99999988754211         778899999999876      44555544

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.42  E-value=9.7e-13  Score=140.83  Aligned_cols=118  Identities=21%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             CCccceeccCCce-eEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCC
Q 011175          369 FADQNLLGEGGFG-SVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG-~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      |...+++|.|+.| .||+|.+ +|+.||||++-..   ......+||.+|+.- +|+||||++|.-.+...+||.+|.|.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence            4556789999998 5899999 8899999998532   123456899999988 69999999998888889999999994


Q ss_pred             CCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          447 NNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       447 ~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                       .+|.+++...  ..........+.+..|+++||++||      +|.|+-+|+
T Consensus       587 -~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNIL  638 (903)
T KOG1027|consen  587 -CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNIL  638 (903)
T ss_pred             -hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEE
Confidence             5799998763  1111111334667788999999886      455554443

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.40  E-value=1e-13  Score=128.35  Aligned_cols=110  Identities=20%  Similarity=0.349  Sum_probs=90.3

Q ss_pred             hcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCe--EEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDR--RLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~--~~lV  441 (492)
                      .++|++.+++|+|.|.+||.|. +.+++.++||+|+.   ...+.+.+||.||..|+ |+||++|+++..+...  -.||
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence            3568888999999999999998 56788999999974   33568999999999996 9999999999987543  4699


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +||+.+.|...+..     .|...++..++.++++||+|+|+
T Consensus       114 FE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS  150 (338)
T KOG0668|consen  114 FEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHS  150 (338)
T ss_pred             hhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHh
Confidence            99999988765542     35556667788899999999764

>smart00090 RIO RIO-like kinase

Probab=99.40  E-value=1.1e-12  Score=126.94  Aligned_cols=115  Identities=14%  Similarity=0.079  Sum_probs=83.1

Q ss_pred             cCCCccceeccCCceeEEEEE--cCCCCEEEEEEcccCCCc------------------------chHHHHHHHHHHHhC
Q 011175          367 DGFADQNLLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQ------------------------GEREFKAEVEIISRI  420 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~--~~~g~~VAVK~l~~~~~~------------------------~~~~f~~Ei~il~~l  420 (492)
                      ..|.+.+.||+|+||.||+|.  ..+|+.||||+++.....                        ....+.+|+++|.+|
T Consensus        28 ~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L  107 (237)
T smart00090       28 ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL  107 (237)
T ss_pred             chHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357888999999999999998  568999999998743210                        012367899999999


Q ss_pred             CCCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       421 ~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +|.+ +.+..++.. +..+|||||+.+++|..++..+.  .+...+.+.|+.||+++|+|||++.
T Consensus       108 ~~~~-i~~p~~~~~-~~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~g  168 (237)
T smart00090      108 YEAG-VPVPKPIAW-RRNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDILEEMRKLYKEG  168 (237)
T ss_pred             HhcC-CCCCeeeEe-cCceEEEEEecCCcccccccccC--CcchHHHHHHHHHHHHHHHHHHhcC
Confidence            7643 332222222 24589999999988866543222  2555667889999999999998755

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.40  E-value=2.5e-12  Score=128.22  Aligned_cols=122  Identities=18%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             cCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCCcch-----------HHHHHHHHHHHhCCCCcccceeeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGE-----------REFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~~~-----------~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      ++|++.++||+|+||.||+|.+.+    +..+|+|+.+.......           ..+..++..+..++|.||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            568889999999999999998644    34566775443221111           112334455667899999999998


Q ss_pred             EEeCC----eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          432 CISDD----RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       432 ~~~~~----~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +....    ..+++||++.. ++.+++....  .+.+..++.|+.||++||+|||+      |+|..+|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nil  158 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIM  158 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE
Confidence            76544    34678887743 5555554322  25678888999999999999965      55555554

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.39  E-value=1.3e-12  Score=141.22  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=87.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEc-ccC-CC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQL-KIG-GG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l-~~~-~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      ...|...++||+|+||.||+|.+.++ .+++|+. ... ..      ...+.|.+|+++|++++|.||+..+.++.+.+.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            34456678999999999999987443 3444432 211 11      112468899999999999999998888888888


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+|||||+.+++|.+++.          .+.+++.||+++|+|||+      |+|..||+
T Consensus       411 ~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NIL  460 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFI  460 (535)
T ss_pred             CEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEE
Confidence            899999999999998874          346789999999999965      55565554

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=1.5e-13  Score=136.46  Aligned_cols=115  Identities=27%  Similarity=0.313  Sum_probs=93.6

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCC---cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG---QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .+|..+.+||+|+||+|.+++.+. .+.+|||+|+++..   ++.+--+.|-++|.-. +-+.+++|+.+|...+.+|+|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            457788999999999999998643 56799999985432   2222234566666655 568899999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.||||..+++.-++  +.+..++.+|..||-||-|||+
T Consensus       429 MEyvnGGDLMyhiQQ~Gk--FKEp~AvFYAaEiaigLFFLh~  468 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQVGK--FKEPVAVFYAAEIAIGLFFLHS  468 (683)
T ss_pred             EEEecCchhhhHHHHhcc--cCCchhhhhhHHHHHHhhhhhc
Confidence            999999999998876655  7778889999999999999997

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.35  E-value=1.8e-12  Score=140.71  Aligned_cols=115  Identities=23%  Similarity=0.247  Sum_probs=76.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-C----CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeE------EE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-D----GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY------CI  433 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~----g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~------~~  433 (492)
                      ..++|.+.++||+|+||.||+|++. +    ++.||||+++....  .+.+..|  .+.+..|.+++.++..      +.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            4578999999999999999999864 4    68899998864321  1222222  1222223333322221      24


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCCCC------------------CCCHHHHHHHHHHHHHHHHHhhc
Q 011175          434 SDDRRLLIYDYVPNNTLYFHLHGEGRP------------------VLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       434 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~------------------~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +++.++|||||+.+|+|+++++.....                  ...+.....|+.||++||+|||+
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~  273 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS  273 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999988653211                  01123345789999999999975

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=7.9e-13  Score=128.27  Aligned_cols=118  Identities=20%  Similarity=0.300  Sum_probs=99.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~  439 (492)
                      ..++|.++++||+|+|.+|.++++. ..+.+|+|++++..   ..+......|-.++.+. +|+.+|.|..+|..+..+|
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            3467899999999999999999864 46789999997532   33345667788777776 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|.||+.||||..++++.++  |.+..+..+...|..||.|||++
T Consensus       328 fvieyv~ggdlmfhmqrqrk--lpeeharfys~ei~lal~flh~r  370 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQRK--LPEEHARFYSAEICLALNFLHER  370 (593)
T ss_pred             EEEEEecCcceeeehhhhhc--CcHHHhhhhhHHHHHHHHHHhhc
Confidence            99999999999888876654  88888888999999999999974

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.34  E-value=3.4e-12  Score=129.33  Aligned_cols=124  Identities=22%  Similarity=0.276  Sum_probs=99.0

Q ss_pred             CCCccceeccCCceeEEEEEcCC--CCEEEEEEcccCCCcchHHHHHHHHHHHhCCC----CcccceeeEE-EeCCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGGGQGEREFKAEVEIISRIHH----RHLVSLVGYC-ISDDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~--g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H----pNIv~l~g~~-~~~~~~~l  440 (492)
                      +|.+.++||+|+||.||++...+  .+.+|+|............+..|+.+|..+.+    .++.++++.. ...+..||
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            78899999999999999998644  34788888765433322378889999998873    5888999888 47778899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH------hhcCCCCceeeC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY------LHEDCKYLIFCF  492 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~Y------LH~~~k~~ii~~  492 (492)
                      ||+.+ |.+|.++......+.++..+.++|++|++.+|+|      ||+|+|..+||+
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~  155 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVV  155 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeee
Confidence            99988 7789887754444568999999999999999975      567888888875

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.33  E-value=2.2e-12  Score=128.95  Aligned_cols=124  Identities=23%  Similarity=0.313  Sum_probs=104.1

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      +....+.|...++||+|.|+.||++.+.    .++.||+|.+....  .-..+.+|+++|..+ .|.||+++.+++..++
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            3445567889999999999999999853    46789999997532  335688999999999 5999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      ..++||||+++.+..+++.+     ++..++..++..+++||.|+      |+|+|+-+|+|
T Consensus       109 ~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~  165 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLY  165 (418)
T ss_pred             eeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccCccccCCCcccccc
Confidence            99999999999999888753     66788888889999999987      57888888876

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.33  E-value=4.8e-12  Score=120.84  Aligned_cols=116  Identities=13%  Similarity=0.071  Sum_probs=85.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchH---------HHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER---------EFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~---------~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      ..++|...++||+|+||.||+... +++.+|||+++.......+         .|.+|++.+.+|+|.||..+.++++..
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            357899999999999999999766 5778999999744332222         268999999999999999999986643


Q ss_pred             --------CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          436 --------DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       436 --------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                              +..+|||||++|.+|.++..      ++..    +..+|+++|..|      |.|+++.+|+
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nil  167 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE------ISED----VKAKIKASIESLHQHGMVSGDPHKGNFI  167 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh------ccHH----HHHHHHHHHHHHHHcCCccCCCChHHEE
Confidence                    35789999999999987642      2221    233555555555      5567766554

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.32  E-value=2.3e-12  Score=122.18  Aligned_cols=123  Identities=18%  Similarity=0.294  Sum_probs=97.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeE-EEeCCeEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY-CISDDRRLLI  441 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~-~~~~~~~~lV  441 (492)
                      ..+.|.+.+.||+|+||.+.+++++. ++.+++|.+... ....++|.+|..--..| .|.||+.-|++ |...+..+++
T Consensus        22 l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   22 LEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            45678889999999999999999754 667899988532 23467899998765556 58999988776 4556777889


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +||+..|||..-+...+   +.+....+++.|++.|++|||      +|+|..+|+
T Consensus       101 qE~aP~gdL~snv~~~G---igE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiL  153 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVEAAG---IGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENIL  153 (378)
T ss_pred             eccCccchhhhhcCccc---ccHHHHHHHHHHHHHHHHHhhccchhhcccccceEE
Confidence            99999999988775543   677888899999999999985      577877665

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.29  E-value=4.1e-13  Score=127.16  Aligned_cols=119  Identities=20%  Similarity=0.257  Sum_probs=92.0

Q ss_pred             CccceeccCCceeEEEEEc-CCCCEEEEEEccc--CCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC-----CeEEEE
Q 011175          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKI--GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRRLLI  441 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~--~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~~~lV  441 (492)
                      +..+-||-|+||.||.... ++|+.||+|++-.  .+....+.|.+|+.+|..++|.||+.++++..-.     +++|+|
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            4457899999999999885 5799999998842  1223346789999999999999999999987543     345788


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~  491 (492)
                      .|+| ..||++++..-  +.|+-....-+.+||++||.||      |+|+|.-+++
T Consensus       136 TELm-QSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLL  188 (449)
T KOG0664|consen  136 TELM-QSDLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLL  188 (449)
T ss_pred             HHHH-HhhhhheeccC--CCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEE
Confidence            8988 45788777654  3467677777889999999998      5688876654

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.27  E-value=2.6e-12  Score=121.94  Aligned_cols=121  Identities=20%  Similarity=0.316  Sum_probs=96.5

Q ss_pred             CccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecCC
Q 011175          370 ADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      +.++.||.|..|.||++++. .|..+|||.+...++.+ .+.++..++++.+.+ +++||+++|||..+...+|.||.|.
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            34467999999999999864 58899999998665443 467888898887765 8999999999999999999999985


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh-------hcCCCCceeeC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL-------HEDCKYLIFCF  492 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL-------H~~~k~~ii~~  492 (492)
                      .. +..+|. +-+..+.+..+-+|...|.+||.||       |+|.|+.+|+|
T Consensus       175 ~C-~ekLlk-rik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILl  225 (391)
T KOG0983|consen  175 TC-AEKLLK-RIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILL  225 (391)
T ss_pred             HH-HHHHHH-HhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEE
Confidence            32 333333 3334577777788999999999998       89999988875

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=7.4e-13  Score=134.64  Aligned_cols=115  Identities=21%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCC-EEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGR-EVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~-~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .+++.+..||-|+||+|-+..++..+ .+|+|+|++..   .+..+.+..|-+||.+++.+.||+||--|.++.++||+|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            34555677999999999998874333 48999987543   334456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |-|-||+|+..|++++.  ++......|+..+++|++|||+
T Consensus       500 EaClGGElWTiLrdRg~--Fdd~tarF~~acv~EAfeYLH~  538 (732)
T KOG0614|consen  500 EACLGGELWTILRDRGS--FDDYTARFYVACVLEAFEYLHR  538 (732)
T ss_pred             HhhcCchhhhhhhhcCC--cccchhhhhHHHHHHHHHHHHh
Confidence            99999999999987654  8888888899999999999997

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.24  E-value=3e-11  Score=113.48  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=83.6

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc----------------------chHHHHHHHHHH
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ----------------------GEREFKAEVEII  417 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~----------------------~~~~f~~Ei~il  417 (492)
                      .++.+....|.+.+.||+|+||.||+|.+.+|+.||||+++.....                      ....+.+|+.++
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            3444444447778999999999999999878999999987532200                      012367899999


Q ss_pred             HhCCCCc--ccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCce
Q 011175          418 SRIHHRH--LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLI  489 (492)
Q Consensus       418 ~~l~HpN--Iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~i  489 (492)
                      .++.|.+  +.++++    .+..+|||||+.+++|..++..        ....+++.+|+++|.+||+      |++..+
T Consensus        88 ~~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~N  155 (198)
T cd05144          88 KALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFN  155 (198)
T ss_pred             HHHHHcCCCCCceee----cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCccc
Confidence            9998874  444444    2456899999999998765321        2345677888888887754      455555


Q ss_pred             ee
Q 011175          490 FC  491 (492)
Q Consensus       490 i~  491 (492)
                      |+
T Consensus       156 il  157 (198)
T cd05144         156 IL  157 (198)
T ss_pred             EE
Confidence            44

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.24  E-value=3.9e-11  Score=105.72  Aligned_cols=101  Identities=21%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC--CcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      .+.||+|.++.||++... ++.++||+++....  ..+|.+|+.+|++|+|  .++.++++++...+..++||||+.++.
T Consensus         3 ~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK-DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ceecccccccceEEEEec-CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            477999999999999984 47899999865432  5679999999999977  589999999888888999999999887


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..+         ++.....++.+++++|++||..
T Consensus        80 ~~~~---------~~~~~~~~~~~~~~~l~~lh~~  105 (155)
T cd05120          80 LDEV---------SEEEKEDIAEQLAELLAKLHQL  105 (155)
T ss_pred             cccC---------CHHHHHHHHHHHHHHHHHHhCC
Confidence            7533         4566677889999999988864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.24  E-value=2.5e-11  Score=113.51  Aligned_cols=124  Identities=21%  Similarity=0.285  Sum_probs=99.4

Q ss_pred             HhcCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC-CcccceeeEEEeCCeEEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..++|.+.++||.|+||.+|+|. +.+|+.||||+-+....  .-.+..|..+.+.|+| -.|-.++.|..+.++..|||
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            34679999999999999999998 67899999998653221  2367889999999976 46777777888888889999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      |++ |-+|.++++-..+ .++..+.+.+|.|++.-++|+      |+|+|+.+|+|
T Consensus        91 dLL-GPsLEdLfnfC~R-~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLM  144 (341)
T KOG1163|consen   91 DLL-GPSLEDLFNFCSR-RFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLM  144 (341)
T ss_pred             ecc-CccHHHHHHHHhh-hhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceee
Confidence            998 6778877754332 378888899999999999987      57889888875

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.21  E-value=1.9e-11  Score=111.85  Aligned_cols=123  Identities=20%  Similarity=0.263  Sum_probs=93.4

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHh-CCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISR-IHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~-l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++..++.||+|+||.|-+-++ .+|...|||+++..- .+..+++++|+++..+ ..++.+|.|+|.+......+|.||.
T Consensus        47 ~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~  126 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMEL  126 (282)
T ss_pred             hhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHH
Confidence            344456799999999877663 579999999998543 3445678899987655 5899999999999999999999999


Q ss_pred             CCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhh-------cCCCCceee
Q 011175          445 VPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLH-------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH-------~~~k~~ii~  491 (492)
                      |.. +|..+..+  .....+.+..+-+||..|.+||.|||       +|.|+.+|+
T Consensus       127 M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiL  181 (282)
T KOG0984|consen  127 MDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNIL  181 (282)
T ss_pred             hhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEE
Confidence            953 45333221  22345788888899999999999985       566666654

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.18  E-value=3.3e-10  Score=111.06  Aligned_cols=115  Identities=28%  Similarity=0.379  Sum_probs=96.6

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCC-cccceeeEEEeCCeEEEEEec
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHR-HLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~Hp-NIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      |...+.||+|+||.||++.+.  ..+++|.+......   ....|.+|+.+++++.|. ||+++++++...+..++|+||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            566788999999999999975  78999999754433   356899999999999988 799999999877778999999


Q ss_pred             CCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +.+++|.+++..... ..+.......++.|++.+|+|||+.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~  121 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG  121 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999977654431 14788889999999999999998755

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.14  E-value=1.6e-10  Score=112.69  Aligned_cols=121  Identities=21%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             cCCCccceeccCCceeEEEEE-cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      -.|.++++||+|+||++|.|+ +-+++.||||.--..  .+.-++..|.+..+.|. ..+|-.++.|..++.+..||||+
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk--S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK--SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEecccc--CCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            357888999999999999997 558999999975321  22335777888888774 57888888887778888999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      + |-+|.+++.-.++ .|+..+.+.||+|++.-|+|+|+      |+|+.+|+
T Consensus       106 L-GPSLEDLFD~CgR-~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFL  156 (449)
T KOG1165|consen  106 L-GPSLEDLFDLCGR-RFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFL  156 (449)
T ss_pred             h-CcCHHHHHHHhcC-cccHHhHHHHHHHHHHHHHHHHhcceeecccCcccee
Confidence            8 6677766654443 48999999999999999999995      67777665

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.13  E-value=5.7e-11  Score=124.56  Aligned_cols=120  Identities=21%  Similarity=0.245  Sum_probs=96.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .+.|.....||+|+|+.|.++.. ..++..+||++...    ..+..+|+.++.+. +|+||++++++|.++.+.|+|||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~----~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR----ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccc----ccccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            56678888899999999999885 45788999999753    23455677666665 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceeeC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFCF  492 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~~  492 (492)
                      ++.+|.|.+.+....   ....++.+|+.+|+.+++|||+      |.|+.+|+|
T Consensus       397 ~l~g~ell~ri~~~~---~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~  448 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKP---EFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILL  448 (612)
T ss_pred             hccccHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheee
Confidence            999999888776543   2236777899999999999975      555656654

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.09  E-value=5.2e-11  Score=121.69  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=96.6

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC------CcccceeeEEEeCCe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHH------RHLVSLVGYCISDDR  437 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H------pNIv~l~g~~~~~~~  437 (492)
                      .-..|.+....|+|-|+.|.+|... .|..||||+|+.+. ...+.=++|++||++|+.      -|+++|+-.|...++
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknH  508 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNH  508 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcce
Confidence            3456888888999999999999853 48899999998532 223455789999999953      478999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCC-CCC------HHHHHHHHHHHHHHHHHhhcCCCCceeeC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRP-VLD------WATRVKIAAGAARGLAYLHEDCKYLIFCF  492 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~-~l~------~~~~l~ia~qIa~gL~YLH~~~k~~ii~~  492 (492)
                      +|||||-+ .-+|.++|.+-++. .|.      +.++|.||+.+++-+.+||.|||+-+|+.
T Consensus       509 LClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLV  569 (752)
T KOG0670|consen  509 LCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILV  569 (752)
T ss_pred             eEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEe
Confidence            99999987 44688888654322 133      45666677777777777899999988863

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.04  E-value=9.9e-10  Score=101.80  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHH----------------------HHHHHHHHHhCCCCc--c
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GERE----------------------FKAEVEIISRIHHRH--L  425 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~----------------------f~~Ei~il~~l~HpN--I  425 (492)
                      .++||+|+||.||+|...+|+.||||+++.....  ....                      ...|.+.+.++++.+  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999878999999998643211  1111                      135666676665443  4


Q ss_pred             cceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       426 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++++    ...+|||||+.+|.+.........  .. .+..+++.+++.+|++||.
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~--~~-~~~~~~~~~~~~~l~~lh~  132 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR--LL-EDPEELYDQILELMRKLYR  132 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh--hc-ccHHHHHHHHHHHHHHHhh
Confidence            444443    346899999999654321111110  11 4567788899999999887

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.03  E-value=1e-09  Score=103.04  Aligned_cols=107  Identities=18%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcc----hHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecC
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG----EREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~----~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ....|++|+||+||++.. .++.++.+.++......    .+.|.+|+++|++|+ |.+|.+++++    +..++||||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            457899999999997765 67788888776432211    125889999999995 5889999886    4579999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCC-CCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDC-KYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~-k~~ii~  491 (492)
                      .|++|+..+...         .+.++.||+++|+|||      +|+ |..||+
T Consensus        81 ~G~~L~~~~~~~---------~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NIL  124 (218)
T PRK12274         81 AGAAMYQRPPRG---------DLAYFRAARRLLQQLHRCGVAHNDLAKEANWL  124 (218)
T ss_pred             cCccHHhhhhhh---------hHHHHHHHHHHHHHHHHCcCccCCCCCcceEE
Confidence            999987544211         1345667777777775      566 455554

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=6.5e-10  Score=124.05  Aligned_cols=126  Identities=23%  Similarity=0.308  Sum_probs=94.8

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeE
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRR  438 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~  438 (492)
                      +......|.+.+.||+|+||.||+|...+|+.||||+-+-.+.+   +|.--.++|.+|+   -+.|+.+..++...+.-
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W---EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S  769 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW---EFYICLQVMERLKPQMLPSIMHISSAHVFQNAS  769 (974)
T ss_pred             eeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce---eeeehHHHHHhhchhhhcchHHHHHHHccCCcc
Confidence            34445678888999999999999999878999999988754433   2333334455554   23456666666677888


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +||+||...|+|.++++.  .+.++|...+.|++|+++-++.||      .|+|+.++++
T Consensus       770 ~lv~ey~~~Gtlld~~N~--~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll  827 (974)
T KOG1166|consen  770 VLVSEYSPYGTLLDLINT--NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLL  827 (974)
T ss_pred             eeeeeccccccHHHhhcc--CCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEe
Confidence            999999999999999974  346899999999999988888875      5677766653

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.93  E-value=7.6e-09  Score=100.30  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             ceec-cCCceeEEEEEcCCCCEEEEEEcccCCC-------------cchHHHHHHHHHHHhCCCCcc--cceeeEEEeCC
Q 011175          373 NLLG-EGGFGSVYKGYLPDGREVAIKQLKIGGG-------------QGEREFKAEVEIISRIHHRHL--VSLVGYCISDD  436 (492)
Q Consensus       373 ~~LG-~G~fG~Vy~g~~~~g~~VAVK~l~~~~~-------------~~~~~f~~Ei~il~~l~HpNI--v~l~g~~~~~~  436 (492)
                      .+|| .|+.|.||+.+. +++.++||+++..+.             .....+.+|+++|.+|+|.||  .+.++++....
T Consensus        37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5687 888999999887 577899998853211             122468899999999998885  77888765433


Q ss_pred             e-E---EEEEecCCC-CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          437 R-R---LLIYDYVPN-NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       437 ~-~---~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      . .   +|||||+.+ ++|.+++.+.   .+...    ++.+|+++|.|||      +|+|..+|+
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~lH~~GI~HrDlkp~NIL  174 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIARFHDAGVYHADLNAHNIL  174 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHHHHHCCCCCCCCCchhEE
Confidence            2 2   599999997 6898887543   24433    3467888888886      466666654

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.92  E-value=4e-09  Score=99.98  Aligned_cols=109  Identities=18%  Similarity=0.223  Sum_probs=86.4

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCC--cccceeeEEEeCC---eEEEEEecCC
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHR--HLVSLVGYCISDD---RRLLIYDYVP  446 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~Hp--NIv~l~g~~~~~~---~~~lV~Ey~~  446 (492)
                      +.||.|.++.||++...+|+.++||+...... ....++.+|+++++.|++.  ++.++++++...+   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            66899999999999986678899999864332 1345789999999999764  4577888876542   5689999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |++|.+.+..   ..++..++..++.+|++.|.+||+-
T Consensus        84 G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~  118 (223)
T cd05154          84 GRVLRDRLLR---PELSPEERRALARALADTLAALHSV  118 (223)
T ss_pred             CEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9988765532   2378888899999999999999974

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.82  E-value=2.1e-09  Score=114.96  Aligned_cols=124  Identities=17%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCc----------------------------------ch----
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ----------------------------------GE----  407 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~----------------------------------~~----  407 (492)
                      .+|+. +-||.|++|+||+|++.+ |+.||||+++.+...                                  ..    
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34665 689999999999999877 999999999633100                                  00    


Q ss_pred             --HHHHHHHHHHHhC----CCCcccceeeEEEe-CCeEEEEEecCCCCCHHHH--HhcCCC--CCCCHHHHHHHHHHHHH
Q 011175          408 --REFKAEVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFH--LHGEGR--PVLDWATRVKIAAGAAR  476 (492)
Q Consensus       408 --~~f~~Ei~il~~l----~HpNIv~l~g~~~~-~~~~~lV~Ey~~~GsL~~~--l~~~~~--~~l~~~~~l~ia~qIa~  476 (492)
                        -+|.+|+..+.++    .|.+.+.+-.++++ ....+||||||.|+.|.++  +...+.  ..+.......++.||.+
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~  278 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFR  278 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence              1344555544444    24444554455543 4556899999999999764  322221  12333334445667665


Q ss_pred             HHHHhhcCCCCceeeC
Q 011175          477 GLAYLHEDCKYLIFCF  492 (492)
Q Consensus       477 gL~YLH~~~k~~ii~~  492 (492)
                       ..|.|.|.++.||++
T Consensus       279 -~GffHaDpHPGNIlv  293 (537)
T PRK04750        279 -DGFFHADMHPGNIFV  293 (537)
T ss_pred             -CCeeeCCCChHHeEE
Confidence             678999999988763

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.74  E-value=2e-08  Score=105.79  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcc----------------------------------------hHHHH
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG----------------------------------------EREFK  411 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~----------------------------------------~~~f~  411 (492)
                      .+.||.|++|+||+|++.+|+.||||+++.+....                                        +-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            36799999999999999999999999986431100                                        01355


Q ss_pred             HHHHHHHhC----CCCcccceeeEEEe-CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHH-------HHH
Q 011175          412 AEVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR-------GLA  479 (492)
Q Consensus       412 ~Ei~il~~l----~HpNIv~l~g~~~~-~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~-------gL~  479 (492)
                      +|++.+.++    +|.+-|.+-.+|++ ....+|||||++|++|.+++..... .++.   .+++.++++       ...
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~~~---~~ia~~~~~~~l~ql~~~g  277 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GLDR---KALAENLARSFLNQVLRDG  277 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CCCH---HHHHHHHHHHHHHHHHhCC
Confidence            666666655    34444444444443 3457999999999999877643211 1222   223332222       334


Q ss_pred             HhhcCCCCceeeC
Q 011175          480 YLHEDCKYLIFCF  492 (492)
Q Consensus       480 YLH~~~k~~ii~~  492 (492)
                      ++|.|.+..||++
T Consensus       278 ~~H~D~hPgNilv  290 (437)
T TIGR01982       278 FFHADLHPGNIFV  290 (437)
T ss_pred             ceeCCCCcccEEE
Confidence            5688888877753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.64  E-value=2.4e-08  Score=97.24  Aligned_cols=110  Identities=22%  Similarity=0.304  Sum_probs=83.2

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEccc--CCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC------CeE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKI--GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD------DRR  438 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~--~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------~~~  438 (492)
                      +|.....+|.|.- .|..+.. -.++.||+|++..  .+....+.-.+|..+|..++|+||++++.+|.-.      .+.
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            4555677888877 5555542 2578899998853  2234456678899999999999999999998643      356


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+|||||. ++|...++.+    ++-.+...|.+|+++|+.|||+
T Consensus        97 y~v~e~m~-~nl~~vi~~e----lDH~tis~i~yq~~~~ik~lhs  136 (369)
T KOG0665|consen   97 YLVMELMD-ANLCQVILME----LDHETISYILYQMLCGIKHLHS  136 (369)
T ss_pred             HHHHHhhh-hHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHh
Confidence            99999994 5677766632    6777788899999999999986

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.56  E-value=1.8e-07  Score=85.01  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=68.3

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCccc-ceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      +.|+.|.++.||+++. +++.|+||+...... ...++.+|+++|+.+.+.+++ ++++++  .+..++||||+++++|.
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence            5689999999999987 477899998754321 234578899999998765654 555543  33458999999998875


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       452 ~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ...      ..    ...++.+|+++|+.||+.
T Consensus        80 ~~~------~~----~~~~~~~l~~~l~~LH~~  102 (170)
T cd05151          80 TED------FS----DPENLEKIAKLLKKLHSS  102 (170)
T ss_pred             ccc------cc----CHHHHHHHHHHHHHHhCC
Confidence            420      01    123456777778877764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=9.7e-08  Score=104.04  Aligned_cols=119  Identities=23%  Similarity=0.306  Sum_probs=86.8

Q ss_pred             CccceeccCCceeEEEEEc-CCCCEEEEEEcccC--CCcch----HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGE----REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~--~~~~~----~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ...+++|.|+||.|+.... ...+.++.|..+..  ....+    ..+..|+.+-..|+|+||+..+..+.+.+..+.+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3568899999997777653 23343444433210  11112    22667888888899999999999888888777789


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+ ||+.++.+.++  +...++..++.|+++|++|||+      |.|..+++
T Consensus       401 E~~~~-Dlf~~~~~~~~--~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll  452 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGK--LTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLL  452 (601)
T ss_pred             hcccH-HHHHHHhcccc--cchhhhhHHHHHHHHHHHHHHhcCceeccCccccEE
Confidence            99999 99999976533  7778888999999999999975      45665554

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.34  E-value=5.8e-07  Score=94.32  Aligned_cols=66  Identities=24%  Similarity=0.485  Sum_probs=60.7

Q ss_pred             HHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       417 l~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |++|.|.||.+|+|.|.+....++|.+||..|+|++.+..+ ...++|.....++++|++||+|||+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~-~~~~d~~F~~s~~rdi~~Gl~ylh~   66 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE-DIKLDYFFILSFIRDISKGLAYLHN   66 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc-ccCccHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999764 3469999999999999999999997

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.33  E-value=1.5e-06  Score=92.51  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=72.6

Q ss_pred             cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHH
Q 011175          388 LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR  467 (492)
Q Consensus       388 ~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~  467 (492)
                      ..++..|.|...+...........+.++.|+.|+|+||+++++.++.++.+|||.|-+.-  |..+|.+.+     ....
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~P--l~~~lk~l~-----~~~v  106 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRP--LETVLKELG-----KEEV  106 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecccc--HHHHHHHhH-----HHHH
Confidence            346788888888765443334567788899999999999999999999999999998753  444554322     3444


Q ss_pred             HHHHHHHHHHHHHhhcCCCCc
Q 011175          468 VKIAAGAARGLAYLHEDCKYL  488 (492)
Q Consensus       468 l~ia~qIa~gL~YLH~~~k~~  488 (492)
                      ...+.||++||.|||++|+.+
T Consensus       107 ~~Gl~qIl~AL~FL~~d~~lv  127 (690)
T KOG1243|consen  107 CLGLFQILAALSFLNDDCNLV  127 (690)
T ss_pred             HHHHHHHHHHHHHHhccCCee
Confidence            567789999999999999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.32  E-value=1.4e-07  Score=104.60  Aligned_cols=120  Identities=23%  Similarity=0.234  Sum_probs=94.3

Q ss_pred             CCCccceeccCCceeEEEEEcCCCCEEEEEEcccCC-CcchHHHHHHHHHHH--hCCCCcccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG-GQGEREFKAEVEIIS--RIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~--~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +|+..+.||.++|=+|++|+.++|. |+||++-+.+ .-..+.|.++++-++  -++|+|++.+.-+.+.+...|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            5777899999999999999987776 8999885443 344556665554443  45899999998887777788999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ..+ +|+|.|.  .|..|...++..||.|++.||.-+|      .|+|..+|+
T Consensus       103 vkh-nLyDRlS--TRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENIL  152 (1431)
T KOG1240|consen  103 VKH-NLYDRLS--TRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENIL  152 (1431)
T ss_pred             Hhh-hhhhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEE
Confidence            954 6888884  4567888899999999999998875      578887776

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.18  E-value=1.4e-05  Score=74.90  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             ceeccCCceeEEEEEcCC-------CCEEEEEEcccCCC--c--------c------------hHHHH----HHHHHHHh
Q 011175          373 NLLGEGGFGSVYKGYLPD-------GREVAIKQLKIGGG--Q--------G------------EREFK----AEVEIISR  419 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-------g~~VAVK~l~~~~~--~--------~------------~~~f~----~Ei~il~~  419 (492)
                      .+||.|.-+.||.|...+       +..||||+.+....  +        +            .+.+.    +|++.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999998543       47899998853210  0        0            11223    79999999


Q ss_pred             CCC--CcccceeeEEEeCCeEEEEEecCCCCCHHH-HHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011175          420 IHH--RHLVSLVGYCISDDRRLLIYDYVPNNTLYF-HLHGEGRPVLDWATRVKIAAGAARGLAYL  481 (492)
Q Consensus       420 l~H--pNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~-~l~~~~~~~l~~~~~l~ia~qIa~gL~YL  481 (492)
                      |+.  -++-+.+++    +..+|||||+.++.+.. .|.+ .  .++..+..++..+++.+|.+|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd-~--~~~~~~~~~i~~~i~~~l~~l  140 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD-A--KLNDEEMKNAYYQVLSMMKQL  140 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc-c--ccCHHHHHHHHHHHHHHHHHH
Confidence            854  455666654    56789999998765532 2221 1  244455567778888888887

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.13  E-value=7e-07  Score=94.29  Aligned_cols=116  Identities=28%  Similarity=0.288  Sum_probs=85.3

Q ss_pred             eeccCCceeEEEEE----cCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecCC
Q 011175          374 LLGEGGFGSVYKGY----LPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~----~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|+|+||.|++..    .+.|..+|+|+++....  ........|..++..++ |+.+|++...+..+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            47999999999764    23466788888864322  11224566778888886 9999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +|+|+..+.+...  +++.....+...+|.+|++||      ++.|..+|+
T Consensus        81 gg~lft~l~~~~~--f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enil  129 (612)
T KOG0603|consen   81 GGDLFTRLSKEVM--FDELDVAFYLAELALALDHLHKLGIAYRDYKLENVL  129 (612)
T ss_pred             cchhhhccccCCc--hHHHHHHHHHHHHHHHHhhcchhHHHHhccccccee
Confidence            9999988865543  555555555666777777776      455555554

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.08  E-value=1.9e-05  Score=82.13  Aligned_cols=105  Identities=21%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             eeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEEEEecCCC-CCHHHHH
Q 011175          381 GSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIYDYVPN-NTLYFHL  454 (492)
Q Consensus       381 G~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~lV~Ey~~~-GsL~~~l  454 (492)
                      .+.||++. .||..|++|++.............-+++++++.|.|||.|.++|..    +..++|||+|..+ ++|+++.
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            46788873 4799999999954333333345567889999999999999998873    4567899999985 5676654


Q ss_pred             hcC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          455 HGE-------------GRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       455 ~~~-------------~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ...             ....+.+..+-.++.|+..||.|+|+.+
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG  413 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG  413 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            321             1123556667788999999999999843

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.06  E-value=2.3e-06  Score=83.98  Aligned_cols=77  Identities=22%  Similarity=0.341  Sum_probs=58.4

Q ss_pred             HHHHHhCCCCcccceeeEEEeCC-----eEEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          414 VEIISRIHHRHLVSLVGYCISDD-----RRLLIYDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       414 i~il~~l~HpNIv~l~g~~~~~~-----~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      ++-|.++.|-|||+++.|+.+..     ...++.|||..|+|..+|++-.  ...+......+++.||+.||.|||. |.
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~  196 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CD  196 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cC
Confidence            34566778999999999876543     3578999999999999997532  2335556667899999999999998 44


Q ss_pred             Cceee
Q 011175          487 YLIFC  491 (492)
Q Consensus       487 ~~ii~  491 (492)
                      +.|||
T Consensus       197 Ppiih  201 (458)
T KOG1266|consen  197 PPIIH  201 (458)
T ss_pred             Ccccc
Confidence            44553

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.00  E-value=3.2e-05  Score=70.31  Aligned_cols=77  Identities=21%  Similarity=0.285  Sum_probs=59.2

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCccc-ceeeEEEeCCeEEEEEecCCCCCH
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      .+.||+|++|.||+|.| .|..+|+|+-+.+  .....|..|+++|..+.--++. ++|.|    +..+++|||+.|-.|
T Consensus        27 ~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~d--s~r~~l~kEakiLeil~g~~~~p~vy~y----g~~~i~me~i~G~~L   99 (201)
T COG2112          27 EKELAKGTTSVVYLGEW-RGGEVALKVRRRD--SPRRNLEKEAKILEILAGEGVTPEVYFY----GEDFIRMEYIDGRPL   99 (201)
T ss_pred             hhhhhcccccEEEEeec-cCceEEEEEecCC--cchhhHHHHHHHHHHhhhcCCCceEEEe----chhhhhhhhhcCcch
Confidence            47799999999999999 5668999986643  3356899999999999887775 44444    333566999999888


Q ss_pred             HHHHh
Q 011175          451 YFHLH  455 (492)
Q Consensus       451 ~~~l~  455 (492)
                      .++..
T Consensus       100 ~~~~~  104 (201)
T COG2112         100 GKLEI  104 (201)
T ss_pred             hhhhh
Confidence            76654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.98  E-value=3.8e-06  Score=84.30  Aligned_cols=67  Identities=21%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             CCCcccceeeEEEeC---------------------------CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHH
Q 011175          421 HHRHLVSLVGYCISD---------------------------DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAG  473 (492)
Q Consensus       421 ~HpNIv~l~g~~~~~---------------------------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~q  473 (492)
                      +|+|||++.++|.+.                           ..+||||.-+. .+|+.||..+.   .+...+.-|+.|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~---~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRH---RSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCC---CchHHHHHHHHH
Confidence            699999999987642                           23578887663 47888887654   466667778899


Q ss_pred             HHHHHHHhh------cCCCCceee
Q 011175          474 AARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       474 Ia~gL~YLH------~~~k~~ii~  491 (492)
                      +++|..|||      +|.|-.+|+
T Consensus       350 lLEav~hL~~hgvAhRDlKSDNiL  373 (598)
T KOG4158|consen  350 LLEAVTHLHKHGVAHRDLKSDNIL  373 (598)
T ss_pred             HHHHHHHHHHccchhhcccccceE
Confidence            999999996      455555554

>PLN02876 acyl-CoA dehydrogenase

Probab=97.96  E-value=3.4e-05  Score=87.91  Aligned_cols=108  Identities=17%  Similarity=0.254  Sum_probs=79.1

Q ss_pred             cceeccCCceeEEEEEcCCC---CEEEEEEcccCC-CcchHHHHHHHHHHHhCC-CCcc--cceeeEEEeC---CeEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPDG---REVAIKQLKIGG-GQGEREFKAEVEIISRIH-HRHL--VSLVGYCISD---DRRLLI  441 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g---~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~-HpNI--v~l~g~~~~~---~~~~lV  441 (492)
                      .+.|+.|.++.+|+..+.++   ..+++|+..... ......+.+|+++|+.|. |.+|  .+++++|.+.   +..|||
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            56789999999999876543   367777764322 123457899999999995 6665  7888888764   457899


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.|..+.+.    ....++..++..++.++++.|+.||+
T Consensus       123 ME~v~G~~~~~~----~~~~~~~~~r~~l~~~l~~~La~LH~  160 (822)
T PLN02876        123 MEYLEGRIFVDP----KLPGVAPERRRAIYRATAKVLAALHS  160 (822)
T ss_pred             EEecCCcccCCc----cCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            999987644321    11124566778899999999999998

>PRK10593 hypothetical protein; Provisional

Probab=97.94  E-value=9e-05  Score=74.24  Aligned_cols=106  Identities=9%  Similarity=0.075  Sum_probs=77.1

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC---CcccceeeEEEeC---CeEEEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH---RHLVSLVGYCISD---DRRLLIY  442 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H---pNIv~l~g~~~~~---~~~~lV~  442 (492)
                      ....+.||+|..+.||+....++ .+.||..+.  ......|.+|.+.|+.|..   -.|-+++++|...   +..+|||
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVm   92 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQG-NPMPLMARS--FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLL   92 (297)
T ss_pred             hheeeecCCccceeEEEEEcCCC-CEEEEEecc--cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEE
Confidence            44457799999999999876555 466676432  1134589999999999853   3578899888653   5689999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||++++++.+.       ......+..++.+++++|+-||+.
T Consensus        93 E~i~G~~~~~~-------~~~~~~~~~l~~~l~~~La~LH~~  127 (297)
T PRK10593         93 ERLRGVSVEAP-------ARTPERWEQLKDQIVEGLLAWHRI  127 (297)
T ss_pred             eccCCEecCCC-------CCCHHHHHHHHHHHHHHHHHHhCC
Confidence            99999877641       123334556778889999999983

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.87  E-value=6e-06  Score=93.82  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             hCCC-CcccceeeEE-------EeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------C
Q 011175          419 RIHH-RHLVSLVGYC-------ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------D  484 (492)
Q Consensus       419 ~l~H-pNIv~l~g~~-------~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~  484 (492)
                      .++| .||++++|+|       .+.+.++++|||+ +++|+++|+... ..+++.++++|++||++||+|||+      |
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~gIvHrD  105 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD-RSVDAFECFHVFRQIVEIVNAAHSQGIVVHN  105 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            3445 5888888887       3334567888987 669999997543 348999999999999999999975      4


Q ss_pred             CCCceee
Q 011175          485 CKYLIFC  491 (492)
Q Consensus       485 ~k~~ii~  491 (492)
                      +|+.+|+
T Consensus       106 lKP~NiL  112 (793)
T PLN00181        106 VRPSCFV  112 (793)
T ss_pred             CCchhEE
Confidence            5665554

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.85  E-value=0.00021  Score=70.45  Aligned_cols=118  Identities=15%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcc-h----------HHHHHHHHHHHhCCCCcc--cceeeEEEe-----
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG-E----------REFKAEVEIISRIHHRHL--VSLVGYCIS-----  434 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~-~----------~~f~~Ei~il~~l~HpNI--v~l~g~~~~-----  434 (492)
                      +++-+.....|++.++ +|+.|.||+........ .          ..+.+|.+.+.+|..-+|  ..++++++.     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            5566556666888777 77889999774322110 1          147899999998854444  566767654     


Q ss_pred             CCeEEEEEecCCCC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          435 DDRRLLIYDYVPNN-TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ....+|||||+.+- +|.+++........+...+..|+.+|++.+.-||      .|++..+|+
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiL  170 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFL  170 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEE
Confidence            23468999999986 7888875322223455566678888888887775      466666665

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.82  E-value=0.00018  Score=65.80  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEc-ccCCC-------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQL-KIGGG-------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l-~~~~~-------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ...+|-+|+-+.|++|.+ .|+.+.||.- .+...       -..+..++|+++|.+++--.|..-.=++.+.....|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            457899999999999998 6777777743 21111       12346789999999987666654444666777888999


Q ss_pred             ecCCC-CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPN-NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~-GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+ -++.+++........+......++.+|-+-+.-||.+
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n  132 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN  132 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC
Confidence            99976 3677777543222222233356777888888778763

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.77  E-value=0.00018  Score=69.09  Aligned_cols=100  Identities=19%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc--cceeeEEEeCCeEEEEEecCCCCC-
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL--VSLVGYCISDDRRLLIYDYVPNNT-  449 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI--v~l~g~~~~~~~~~lV~Ey~~~Gs-  449 (492)
                      ..||+|..+.||+.   .|..+++|......  ...+..+|.++|+.+..-+|  .+.++++...+...+||||+.|.+ 
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~   81 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRS   81 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccc
Confidence            67899999999984   24467788876422  34567899999999875544  688888888888899999999874 


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +...+.      .....+..++.++|+.|.-||+
T Consensus        82 ~~~~~~------~~~~~~~~l~~~la~~l~~lH~  109 (226)
T TIGR02172        82 FSRIIS------DNPSRLEEIAKIFAEMAKKLHS  109 (226)
T ss_pred             hhhhhc------CCHHHHHHHHHHHHHHHHHHhC
Confidence            333332      2344556788889999999996

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.73  E-value=5.8e-05  Score=80.60  Aligned_cols=118  Identities=17%  Similarity=0.156  Sum_probs=75.6

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCc----------------------------------------chHHHHH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ----------------------------------------GEREFKA  412 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~----------------------------------------~~~~f~~  412 (492)
                      +-|+.++.|+||+|++.+|+.||||+.+-+-..                                        .+-+|.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            568999999999999999999999988532100                                        0113556


Q ss_pred             HHHHHHhC----CCCcccceeeEEEe-CCeEEEEEecCCCCCHHHHH--hcCCCC--CCCHHHHHHHHHHHHHHHHHhhc
Q 011175          413 EVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFHL--HGEGRP--VLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       413 Ei~il~~l----~HpNIv~l~g~~~~-~~~~~lV~Ey~~~GsL~~~l--~~~~~~--~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+.-+.++    ++..-+++=.+|++ .....|+|||+.|--+.++.  ...+..  .+...-...+..|+.+ -.|.|.
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~-dgffHa  289 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLR-DGFFHA  289 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cCcccc
Confidence            66655554    33334555556664 46678999999998886663  332211  1222222334445555 788899


Q ss_pred             CCCCceee
Q 011175          484 DCKYLIFC  491 (492)
Q Consensus       484 ~~k~~ii~  491 (492)
                      |-+.-||+
T Consensus       290 DpHpGNi~  297 (517)
T COG0661         290 DPHPGNIL  297 (517)
T ss_pred             CCCccceE
Confidence            88887765

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.71  E-value=0.00015  Score=68.70  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=77.7

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc--ccceeeEEEe---CCeEEEEEecCC
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGYCIS---DDRRLLIYDYVP  446 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~l~g~~~~---~~~~~lV~Ey~~  446 (492)
                      ++.|+.|..+.||+....+ +.++||+....  ....++.+|+.+++.|....  +.++++++..   ....+++|||+.
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~   78 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIP   78 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEES
T ss_pred             CccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEec
Confidence            3679999999999999856 68999987543  34567889999998885443  5677776543   335689999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..+..        .++...+..++.++++.|+-||+.
T Consensus        79 g~~~~~--------~~~~~~~~~~~~~~~~~l~~lh~~  108 (239)
T PF01636_consen   79 GRPLDD--------ELSPEQRPELLRQLGRALAQLHQV  108 (239)
T ss_dssp             SEEHHH--------TSTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccc--------cccccccccccccchhhhhhcccc
Confidence            998876        256677888899999999999985

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=2.1e-05  Score=82.99  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--CCCEEEEEEcccCCCcchH--HHHHHHHHHHhC-CCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGGGQGER--EFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--~g~~VAVK~l~~~~~~~~~--~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..+|.++..||.|.|+.||+..++  ++..+++|.+.........  .-+.|+.+...| .|.++++++..+...+..||
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYI  343 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccC
Confidence            456888899999999999998743  5778999988754333222  234566665555 58899998888888888899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      -.|||+++++...+.  -...++...++++..|++.+|.|+|+
T Consensus       344 p~e~~~~~s~~l~~~--~~~~~d~~~~~~~~~q~~~~l~~i~s  384 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSV--TSQMLDEDPRLRLTAQILTALNVIHS  384 (524)
T ss_pred             chhhhcCcchhhhhH--HHHhcCcchhhhhHHHHHhccccccc
Confidence            999999999866552  23347778888899999999999884

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.61  E-value=0.00044  Score=64.98  Aligned_cols=115  Identities=18%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEcccCC----------------CcchHHHHHHHHHHHhCC------CCcccce
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----------------GQGEREFKAEVEIISRIH------HRHLVSL  428 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~----------------~~~~~~f~~Ei~il~~l~------HpNIv~l  428 (492)
                      ....||+|+.-.||.-  .++...+||+++...                ....+++++|+.-...+.      +.+|.++
T Consensus         5 ~~~~i~~G~~R~cy~H--P~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQH--PDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CCcccccCCCceEEEC--CCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            4577999999999973  345667888886544                112356777777666655      8899999


Q ss_pred             eeEEEeCCeEEEEEecCCC--C----CHHHHHhcCCCCCCCHHHHHHHHHHHHHHH---HHhhcCCCCceee
Q 011175          429 VGYCISDDRRLLIYDYVPN--N----TLYFHLHGEGRPVLDWATRVKIAAGAARGL---AYLHEDCKYLIFC  491 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~--G----sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL---~YLH~~~k~~ii~  491 (492)
                      +|+.+++...-+|+|.+.+  |    +|.+++.++.   ++. ...+.+.++.+-|   .-+..|.+..+|+
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~---~~~-~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv  150 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG---LTE-ELRQALDEFKRYLLDHHIVIRDLNPHNIV  150 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC---ccH-HHHHHHHHHHHHHHHcCCeecCCCcccEE
Confidence            9999999999999998753  2    4677775432   444 3333333333333   2233455554444

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=2.1e-05  Score=85.91  Aligned_cols=114  Identities=19%  Similarity=0.300  Sum_probs=85.5

Q ss_pred             CCCccceeccCCceeEEEEEcCC--CCEEEEEEcccCC--CcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGG--GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~--g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .|.+.+.||+|+|+.|-+....+  ...+|+|.+....  ....+....|+.+-+++. |.|++++++...+.+..++++
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~  100 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSL  100 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccccc
Confidence            45566779999999998876533  3456777765433  122234455777777786 999999999999999999999


Q ss_pred             ecCCCCCHHHHH-hcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          443 DYVPNNTLYFHL-HGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       443 Ey~~~GsL~~~l-~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      ||..+|++++.+ +.+. ...+....-.+..|+..||.|+|
T Consensus       101 ~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H  140 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLH  140 (601)
T ss_pred             CcccccccccccccCCc-cCCCCcchhhhhhhhccCccccC
Confidence            999999999888 4432 12444455678899999999999

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.45  E-value=0.00082  Score=61.71  Aligned_cols=84  Identities=15%  Similarity=0.243  Sum_probs=58.9

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEc-ccCCCc-------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQL-KIGGGQ-------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l-~~~~~~-------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+|++|+-..||.+.| -|..+++|.= .+....       ..+.-++|+++|.+++--.|..=+=++.+.+...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            4588999999999987 4444666633 221111       113467899999998766665444455667788999999


Q ss_pred             CCCCCHHHHHhcC
Q 011175          445 VPNNTLYFHLHGE  457 (492)
Q Consensus       445 ~~~GsL~~~l~~~  457 (492)
                      ++|..|.++|...
T Consensus        81 I~G~~lkd~l~~~   93 (204)
T COG3642          81 IEGELLKDALEEA   93 (204)
T ss_pred             eCChhHHHHHHhc
Confidence            9999999888654

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.40  E-value=0.0011  Score=62.09  Aligned_cols=67  Identities=28%  Similarity=0.422  Sum_probs=49.9

Q ss_pred             cCCCccceeccCCc-eeEEEEEcCCCCEEEEEEcccC---CC------------------cchHHHHHHHHHHHhC---C
Q 011175          367 DGFADQNLLGEGGF-GSVYKGYLPDGREVAIKQLKIG---GG------------------QGEREFKAEVEIISRI---H  421 (492)
Q Consensus       367 ~~~~~~~~LG~G~f-G~Vy~g~~~~g~~VAVK~l~~~---~~------------------~~~~~f~~Ei~il~~l---~  421 (492)
                      .+++.++.||+|.. |.||+.++ +|+.+|||+++..   ..                  .....|..|.+...+|   +
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            66788899999999 99999999 7889999994311   00                  1113588888877766   4


Q ss_pred             CCcc--cceeeEEEe
Q 011175          422 HRHL--VSLVGYCIS  434 (492)
Q Consensus       422 HpNI--v~l~g~~~~  434 (492)
                      +.++  |+++||..-
T Consensus       116 ~e~~~Avkc~Gyl~L  130 (207)
T PF13095_consen  116 REGLWAVKCHGYLLL  130 (207)
T ss_pred             ccCceEEEeeEEEEE
Confidence            5566  899998753

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.37  E-value=0.0011  Score=64.16  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             eeccCCc-eeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecCCCCCHH
Q 011175          374 LLGEGGF-GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       374 ~LG~G~f-G~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~  451 (492)
                      -|-.|.+ ..||+... ++..+.||+.....   ..++.+|+++|+.|. |--+.++++++..++..+|||||++|..|.
T Consensus         5 ~~~~g~~~~~v~~~~~-~~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   80 (244)
T cd05150           5 RVTEGQSGATVYRLDG-KNPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAA   80 (244)
T ss_pred             ecCCCCCcCeEEEEcC-CCCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHh
Confidence            3555666 67899876 44678888875332   346778999998884 444558888877767789999999998775


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       452 ~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ....        ...+..++.++++.|.-||+-
T Consensus        81 ~~~~--------~~~~~~~~~~l~~~l~~lH~i  105 (244)
T cd05150          81 ALWE--------ELEPERLVDALAEALRRLHAL  105 (244)
T ss_pred             Hhhc--------ccCHHHHHHHHHHHHHHHhcC
Confidence            4321        112345778888888889873

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.31  E-value=0.00071  Score=66.98  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCC----------CcccceeeEEE-
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHH----------RHLVSLVGYCI-  433 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~H----------pNIv~l~g~~~-  433 (492)
                      +...+.||.|+|+.||++++. .|+.+|||++.....   ...+++++|...+..+.+          -.++--++.+. 
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            456789999999999999975 488999998864332   234578887766655433          22222223222 


Q ss_pred             --------eCC--------eEEEEEecCCCCCHHHHHh---cCCC--CCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          434 --------SDD--------RRLLIYDYVPNNTLYFHLH---GEGR--PVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       434 --------~~~--------~~~lV~Ey~~~GsL~~~l~---~~~~--~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                              ...        +.+++|.-+ .+||.+++.   ....  ..+....++.+.+|+++-++|||+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~  163 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS  163 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence                    111        235667666 567765543   2221  124455667788899999999975

>PRK09902 hypothetical protein; Provisional

Probab=97.27  E-value=0.0071  Score=57.13  Aligned_cols=125  Identities=12%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             cHHHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCC------CcchHHHHHHHHHHHhCCCCc--cccee
Q 011175          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG------GQGEREFKAEVEIISRIHHRH--LVSLV  429 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~------~~~~~~f~~Ei~il~~l~HpN--Iv~l~  429 (492)
                      +++.+-....++...---|+|+...||+-.+ +|+.+-||+-....      ...+..|.+|+..|.+|..-+  +.+++
T Consensus         9 ~f~~~w~~~~~wve~pN~~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv   87 (216)
T PRK09902          9 EFNHWWATEGDWVEEPNYRRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV   87 (216)
T ss_pred             hHHHHHhCCCceecCCCcCCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc
Confidence            3455544445555555567788888999877 55578888764111      123457999999999985433  44555


Q ss_pred             eEEEeC----CeEEEEEecCCC-CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          430 GYCISD----DRRLLIYDYVPN-NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       430 g~~~~~----~~~~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+....    -.-+||+|-+.| .+|.+++.+......+..++..|..+|++.+.-||+
T Consensus        88 f~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~  146 (216)
T PRK09902         88 FGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS  146 (216)
T ss_pred             eeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence            222221    134789997754 688888865443346777788999999999999976

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.13  E-value=0.00098  Score=64.74  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc----------------------chHHHHHHHHHHHhCCCC--c
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ----------------------GEREFKAEVEIISRIHHR--H  424 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~----------------------~~~~f~~Ei~il~~l~Hp--N  424 (492)
                      ..+.+.||.|.-+.||.|...+|..+|||.=+.....                      ......+|.++|.+|.-.  .
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            4456889999999999999989999999965422100                      012356899999998654  6


Q ss_pred             ccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHH-HHHH--HHHHHHHhhcCCCCceee
Q 011175          425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK-IAAG--AARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       425 Iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~-ia~q--Ia~gL~YLH~~~k~~ii~  491 (492)
                      |-+-+++    +...+||||++|--|...-.    ...+....+. |+..  +|.-..|.|.|...-||+
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r~----~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIl  234 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLRL----DVENPDEILDKILEEVRKAYRRGIVHGDLSEFNIL  234 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeecccC----cccCHHHHHHHHHHHHHHHHHcCccccCCchheEE
Confidence            6666654    67789999999876653321    0112222222 2222  223556788776665553

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.12  E-value=0.00036  Score=65.01  Aligned_cols=66  Identities=26%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             eEEEEEcCCCCEEEEEEcccCCC-------------c---------c----hHHHHHHHHHHHhCCCC--cccceeeEEE
Q 011175          382 SVYKGYLPDGREVAIKQLKIGGG-------------Q---------G----EREFKAEVEIISRIHHR--HLVSLVGYCI  433 (492)
Q Consensus       382 ~Vy~g~~~~g~~VAVK~l~~~~~-------------~---------~----~~~f~~Ei~il~~l~Hp--NIv~l~g~~~  433 (492)
                      .||.|...+|..||||+.+....             .         .    .....+|++.|.++..-  ++-+++++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            48999988899999998753210             0         0    12466899999999766  45566654  


Q ss_pred             eCCeEEEEEecCC--CCCHH
Q 011175          434 SDDRRLLIYDYVP--NNTLY  451 (492)
Q Consensus       434 ~~~~~~lV~Ey~~--~GsL~  451 (492)
                        +..+|||||+.  |..|.
T Consensus        79 --~~~~ivME~I~~~G~~~~   96 (188)
T PF01163_consen   79 --NRNVIVMEYIGEDGVPLP   96 (188)
T ss_dssp             --ETTEEEEE--EETTEEGG
T ss_pred             --eCCEEEEEecCCCccchh
Confidence              24479999998  54443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.11  E-value=0.0028  Score=67.84  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=70.1

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCc-------------------------------------chHHHHHHHH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-------------------------------------GEREFKAEVE  415 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~-------------------------------------~~~~f~~Ei~  415 (492)
                      +-||.-+.|+||++++++|+.||||+-+.+-.+                                     .+-+|.+|++
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            569999999999999999999999987532110                                     0114556665


Q ss_pred             HHHh----CCCCcc---cceeeEEEe-CCeEEEEEecCCCCCHHHH--HhcCCCCCCCHHHHHH-----HHHHHHHHHHH
Q 011175          416 IISR----IHHRHL---VSLVGYCIS-DDRRLLIYDYVPNNTLYFH--LHGEGRPVLDWATRVK-----IAAGAARGLAY  480 (492)
Q Consensus       416 il~~----l~HpNI---v~l~g~~~~-~~~~~lV~Ey~~~GsL~~~--l~~~~~~~l~~~~~l~-----ia~qIa~gL~Y  480 (492)
                      -..+    ++|-++   |.+=.++++ .....|+||||.|.-+.+.  |.+.+   ++-...+.     ++.||++ =.|
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~g---i~~~~i~~~l~~~~~~qIf~-~Gf  322 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRG---ISPHDILNKLVEAYLEQIFK-TGF  322 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcC---CCHHHHHHHHHHHHHHHHHh-cCC
Confidence            4433    456662   224445544 3467899999999877443  33332   34333322     3334443 227


Q ss_pred             hhcCCCCceee
Q 011175          481 LHEDCKYLIFC  491 (492)
Q Consensus       481 LH~~~k~~ii~  491 (492)
                      +|.|=++-||+
T Consensus       323 fHaDPHPGNil  333 (538)
T KOG1235|consen  323 FHADPHPGNIL  333 (538)
T ss_pred             ccCCCCCCcEE
Confidence            78877776654

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.06  E-value=0.0039  Score=64.80  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             ceeccCCceeEEEEEcCCC-CEEEEEEcccC-----C--CcchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeEEEE
Q 011175          373 NLLGEGGFGSVYKGYLPDG-REVAIKQLKIG-----G--GQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g-~~VAVK~l~~~-----~--~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~~lV  441 (492)
                      +.||.|.++.||+....+| +.|+||.-...     .  ....+.+..|.+.|..+.   ..++.+++.+  +.+..+||
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEEE
Confidence            5699999999999998776 48999974311     1  113456777888888762   3456777766  34667899


Q ss_pred             EecCCCCC-HHHHHhc
Q 011175          442 YDYVPNNT-LYFHLHG  456 (492)
Q Consensus       442 ~Ey~~~Gs-L~~~l~~  456 (492)
                      |||+.+.. |+..|..
T Consensus       110 ME~L~~~~~lr~~Ll~  125 (401)
T PRK09550        110 MEDLSDHKILRKGLID  125 (401)
T ss_pred             EecCCCccHHHHHHhc
Confidence            99998755 4555543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.00053  Score=72.60  Aligned_cols=115  Identities=18%  Similarity=0.094  Sum_probs=82.7

Q ss_pred             CCCccceecc--CCceeEEEEEc---CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEE
Q 011175          368 GFADQNLLGE--GGFGSVYKGYL---PDGREVAIKQLKIGGG--QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       368 ~~~~~~~LG~--G~fG~Vy~g~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~  439 (492)
                      .|...+.+|+  |.+|.||.+..   .+++.+|+|+-+....  .....=.+|+.-..++ .|.|+++.+..+++.+.+|
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            3555678999  99999999876   3577899997543222  2223344566666666 4999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHH----HHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR----GLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~----gL~YLH~~  484 (492)
                      |-+|+|. .+|..+.+...+ .+.......+..+..+    ||.++|.+
T Consensus       195 iqtE~~~-~sl~~~~~~~~~-~~p~~~l~~~~~~~~~~~~~al~~~hs~  241 (524)
T KOG0601|consen  195 IQTELCG-ESLQSYCHTPCN-FLPDNLLWNSLRDWLSRDVTALSHLHSN  241 (524)
T ss_pred             eeecccc-chhHHhhhcccc-cCCchhhhhHHhhhhhcccccccccCCC
Confidence            9999996 778777765432 3455555566667777    99998763

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=96.99  E-value=0.0052  Score=58.35  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=72.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHH---------HHHHHHHHHhCC---CCcccceeeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE---------FKAEVEIISRIH---HRHLVSLVGYCI  433 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~---------f~~Ei~il~~l~---HpNIv~l~g~~~  433 (492)
                      .++|...+++-......|.+-.. +|+.+.+|..+......++.         +.+++..+.+++   --+++.++.+++
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            46677788888888877887777 67889999886543322222         234444444443   334444444433


Q ss_pred             e-----CCeEEEEEecCCCCCHHHHHhcCCCCCCCH--HHHHHHHHHHHHHHHHhhcCCCCceeeC
Q 011175          434 S-----DDRRLLIYDYVPNNTLYFHLHGEGRPVLDW--ATRVKIAAGAARGLAYLHEDCKYLIFCF  492 (492)
Q Consensus       434 ~-----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~--~~~l~ia~qIa~gL~YLH~~~k~~ii~~  492 (492)
                      .     ....+|||||++|..|.++..      ++.  .+.+.-++.=++...|+|.|++..+|++
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv  168 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDIED------IDEDLAEKIVEAIKQLHKHGFYHGDPHPGNFLV  168 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccchh------cCHHHHHHHHHHHHHHHHcCCccCCCCcCcEEE
Confidence            2     234468999999988866542      221  1222223334556778899999988763

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.97  E-value=0.002  Score=62.01  Aligned_cols=130  Identities=16%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             cHHHHHHHhcCCCccce---eccCCceeEEEEEcCCCCEEEEEEcccCCCcch------------------------HHH
Q 011175          358 TYEELVKATDGFADQNL---LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE------------------------REF  410 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~---LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~------------------------~~f  410 (492)
                      +++.+....++..+.++   |..|.-..||+|...++..||||+.+......+                        .+.
T Consensus        36 t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~  115 (268)
T COG1718          36 TLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWA  115 (268)
T ss_pred             HHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHH
Confidence            45556666666555444   556667789999987899999999864321100                        123


Q ss_pred             HHHHHHHHhCCC--CcccceeeEEEeCCeEEEEEecCCCCCH-HHHHhcCCCCC----CCHHHHHHHHHHHHHHHHHhhc
Q 011175          411 KAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNTL-YFHLHGEGRPV----LDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       411 ~~Ei~il~~l~H--pNIv~l~g~~~~~~~~~lV~Ey~~~GsL-~~~l~~~~~~~----l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+|+.-|+++..  =.+-+=+++    ....|||||+....+ .=.|.+-....    --|.+.++.+..+.+...+.|.
T Consensus       116 ~kEf~NL~R~~eAGVrvP~Pi~~----~~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHg  191 (268)
T COG1718         116 RKEFRNLKRAYEAGVRVPEPIAF----RNNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHG  191 (268)
T ss_pred             HHHHHHHHHHHHcCCCCCCceee----cCCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccc
Confidence            456666666632  233333443    234799999965421 11121111000    0133334444445555556677


Q ss_pred             CCCCceee
Q 011175          484 DCKYLIFC  491 (492)
Q Consensus       484 ~~k~~ii~  491 (492)
                      |.---||+
T Consensus       192 DLSEyNiL  199 (268)
T COG1718         192 DLSEYNIL  199 (268)
T ss_pred             cchhhheE
Confidence            66555554

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.00031  Score=73.27  Aligned_cols=120  Identities=13%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             ceeccCCceeEEEEEcCCC----CEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceee-------EEE-----eCC
Q 011175          373 NLLGEGGFGSVYKGYLPDG----REVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG-------YCI-----SDD  436 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g----~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g-------~~~-----~~~  436 (492)
                      +.++++.+|.++.+...++    +.++.|..+.++........+++..+....|.|..-+.+       .+.     ...
T Consensus       250 k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~s~~~d~~~s~~~~~~~~~v~~~~  329 (516)
T KOG1033|consen  250 KSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNRSILEDLRPSLFESSKRNKVGKKV  329 (516)
T ss_pred             ccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCcccccCCCCchhhhcccccccccc
Confidence            4455555555554442222    234445444433122233334454444444444333333       111     123


Q ss_pred             eEEEEEecCCCCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHH---hhcCCCCceeeC
Q 011175          437 RRLLIYDYVPNNTLYFHLHGE-GRPVLDWATRVKIAAGAARGLAY---LHEDCKYLIFCF  492 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~-~~~~l~~~~~l~ia~qIa~gL~Y---LH~~~k~~ii~~  492 (492)
                      ++||.|++|..++|.+||.++ .....+|...++++.||+.|++|   ||+|.|+.+|-|
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~  389 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFF  389 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhcccccccc
Confidence            578999999999999999743 33456788899999999999986   799998877754

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.96  E-value=0.002  Score=60.05  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=55.0

Q ss_pred             HHHHHHHHhCCC-CcccceeeEEEeCCeEEEEEecCCCCCHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Q 011175          411 KAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLHEDCKYL  488 (492)
Q Consensus       411 ~~Ei~il~~l~H-pNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~  488 (492)
                      ..|..+|+.|.+ .++.+++|+|    ..++|.||...+.++..... .......|.+|++||+++++.+++|+++-...
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~C----G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~   82 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSC----GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGF   82 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeEC----CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            458888999976 6999999999    34789999998766421000 01123689999999999999999998754433

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=96.71  E-value=0.0008  Score=45.27  Aligned_cols=27  Identities=11%  Similarity=0.155  Sum_probs=11.6

Q ss_pred             eeehhhHHHHHHHHHHHHHHHhhhhcc
Q 011175          270 TVVIAVAVGIIAFSLIGLVVWCLRRRK  296 (492)
Q Consensus       270 ~v~i~v~~~iv~~~~l~l~~~~~~rrk  296 (492)
                      .+++++++.++++++++++++++||||
T Consensus        12 aIa~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   12 AIAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             EEEEEEEechHHHHHHHHHHhheEEec
Confidence            344444444444444443444444433

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.66  E-value=0.0096  Score=57.06  Aligned_cols=98  Identities=21%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             ceeccCCceeEEEEEcCC--CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEEecCCCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD--GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~--g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      +.|..|-...||+....+  ++.|++|+...... ...+..+|+.+++.+...+| .++++.+.    ..+||||++|.+
T Consensus         4 ~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~-~~~d~~~E~~~~~~l~~~gl~P~v~~~~~----~~~l~e~i~G~~   78 (235)
T cd05157           4 KRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTE-LIIDRERELRIHKLLSKHGLAPKLYATFQ----NGLIYEFIPGRT   78 (235)
T ss_pred             EEcCCcccceEEEEEcCCCCCCeEEEEEccCCcc-ceecHHHHHHHHHHHHhCCCCCeEEEEeC----CcEEEEeeCCCc
Confidence            567888889999988754  67888997754321 12234578888888854444 45554432    248999999876


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |.....          ....++.++++.|+-||+..
T Consensus        79 l~~~~~----------~~~~~~~~la~~l~~lH~~~  104 (235)
T cd05157          79 LEPEDL----------RNPKIYRLIARELAKLHSIK  104 (235)
T ss_pred             CCHHHc----------cChHHHHHHHHHHHHHhccc
Confidence            532211          11235667788888888744

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.56  E-value=0.016  Score=54.67  Aligned_cols=82  Identities=24%  Similarity=0.194  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhCCCC--cccceeeEEEeCC----eEEEEEecCCCC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 011175          408 REFKAEVEIISRIHHR--HLVSLVGYCISDD----RRLLIYDYVPNN-TLYFHLHGEGRPVLDWATRVKIAAGAARGLAY  480 (492)
Q Consensus       408 ~~f~~Ei~il~~l~Hp--NIv~l~g~~~~~~----~~~lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~Y  480 (492)
                      ..+.+|.+.+.+|..-  .+.+.+++.+...    ..+||+|++++- +|.+++.+...  ++...+..++.+|++.++-
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~~  133 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIAK  133 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHHH
Confidence            4678888888888544  4467777776532    348999999884 79888875322  4455566777777777766


Q ss_pred             hh------cCCCCceee
Q 011175          481 LH------EDCKYLIFC  491 (492)
Q Consensus       481 LH------~~~k~~ii~  491 (492)
                      ||      .|++..+|+
T Consensus       134 lH~~gi~H~Dl~~~NIL  150 (206)
T PF06293_consen  134 LHDAGIYHGDLNPSNIL  150 (206)
T ss_pred             HHHCcCCCCCCCcccEE
Confidence            65      566666665

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=96.48  E-value=0.00029  Score=75.23  Aligned_cols=107  Identities=10%  Similarity=0.060  Sum_probs=73.0

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc-ccceeeEEEeCCeEEEEEecCCCC-CH
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH-LVSLVGYCISDDRRLLIYDYVPNN-TL  450 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN-Iv~l~g~~~~~~~~~lV~Ey~~~G-sL  450 (492)
                      .-+++|+++++||.+-...+.+.+|.+...     ....-++++|.+++|+| .++.++-+..++..+++|+|+.+| +.
T Consensus       248 h~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~  322 (829)
T KOG0576|consen  248 HNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSS  322 (829)
T ss_pred             HHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccc
Confidence            447899999999987433344446655422     45566889999999999 888888888888899999999887 22


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ...... ....+...+...+++.-+++|+|||+.-
T Consensus       323 ~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~~~~  356 (829)
T KOG0576|consen  323 ALEMTV-SEIALEQYQFAYPLRKETRPLAELHSSY  356 (829)
T ss_pred             cccCCh-hhHhhhhhhhhhhhhhhccccccccccc
Confidence            111110 0111333444556667788999999864

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.0081  Score=60.87  Aligned_cols=113  Identities=16%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             CccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cch------------------------HHHHHHHHHHHhCCCC
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGE------------------------REFKAEVEIISRIHHR  423 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~------------------------~~f~~Ei~il~~l~Hp  423 (492)
                      .+..+|..|.-+.||.+.-.+|..+|||+++..-.  .++                        -+-.+|++-|++|+..
T Consensus       147 ~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             ecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            34567888989999999988999999998863210  000                        1234577777777665


Q ss_pred             cccceeeEEEeCCeEEEEEecCCCCCH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 011175          424 HLVSLVGYCISDDRRLLIYDYVPNNTL-YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY  487 (492)
Q Consensus       424 NIv~l~g~~~~~~~~~lV~Ey~~~GsL-~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k~  487 (492)
                      .|-.---+..  ....|||+|+.+... .-.|..   ..|....+..+-.|+++-|.-|-+.|++
T Consensus       227 GIP~PePIlL--k~hVLVM~FlGrdgw~aPkLKd---~~ls~~ka~~~Y~~~v~~MR~lY~~c~L  286 (520)
T KOG2270|consen  227 GIPCPEPILL--KNHVLVMEFLGRDGWAAPKLKD---ASLSTSKARELYQQCVRIMRRLYQKCRL  286 (520)
T ss_pred             CCCCCCceee--ecceEeeeeccCCCCcCccccc---ccCChHHHHHHHHHHHHHHHHHHHHhce
Confidence            5432221221  234699999974332 112211   1244444555555666666666555554

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.37  E-value=0.012  Score=58.63  Aligned_cols=96  Identities=10%  Similarity=0.065  Sum_probs=62.4

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc--ccceeeE------EEeCCeEEEEEe
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGY------CISDDRRLLIYD  443 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~l~g~------~~~~~~~~lV~E  443 (492)
                      .+.|..|....+|+... ++..+++|+...   ....++..|++++..|++.+  +.+++..      ...++..++|||
T Consensus        19 i~~i~~G~~n~~y~v~~-~~~~~vLr~~~~---~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~   94 (296)
T cd05153          19 FEGISAGIENTNYFVTT-DSGRYVLTLFEK---VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVE   94 (296)
T ss_pred             eecccCccccceEEEEe-CCCcEEEEEcCC---CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEE
Confidence            46677788889999876 445688898764   23456777888888885443  4454442      123456689999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |++|..+..         ++.    .++.++++.|+-||+-
T Consensus        95 ~i~G~~~~~---------~~~----~~~~~lg~~La~lH~~  122 (296)
T cd05153          95 FLAGEHLTR---------PTA----AHCRQIGEALARLHLA  122 (296)
T ss_pred             eCCCCCCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence            999876532         121    2455677777778853

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=96.18  E-value=0.0032  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=14.7

Q ss_pred             CCCcccceeehhhHHHHHHHHHHHHHHHhhhhcc
Q 011175          263 NGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRK  296 (492)
Q Consensus       263 ~g~~~~~~v~i~v~~~iv~~~~l~l~~~~~~rrk  296 (492)
                      +++.+..++.|+|++++++.+|+++++|++++||
T Consensus        61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~   94 (96)
T PTZ00382         61 SGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRG   94 (96)
T ss_pred             CCcccccEEEEEeehhhHHHHHHHHHhheeEEee
Confidence            3444444444444333333344444555544443

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.17  E-value=0.013  Score=56.38  Aligned_cols=96  Identities=15%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             ceeccCCce-eEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC---cccceeeEEEeCC---eEEEEEecC
Q 011175          373 NLLGEGGFG-SVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCISDD---RRLLIYDYV  445 (492)
Q Consensus       373 ~~LG~G~fG-~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~l~g~~~~~~---~~~lV~Ey~  445 (492)
                      +.|+.|+.. .||+.    +..++||..+..  ....++.+|+++|..|...   .+-++++.+...+   ..++||||+
T Consensus         3 ~~~~~gG~~n~vy~~----~~~~VlR~~~~~--~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRL----GDDMSVRLPSAA--GYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEc----CCceEEEcCCcc--chHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            456766665 58874    235677765532  2345789999999888532   3445555443322   348899999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|.+|.+..       +.  ...+++.++++.|.-||+
T Consensus        77 ~G~~l~~~~-------~~--~~~~l~~~la~~l~~LH~  105 (235)
T cd05155          77 EGETATAAA-------LS--DPSEFAEDLADFLAALRQ  105 (235)
T ss_pred             cCCCCCccc-------cC--CHHHHHHHHHHHHHHHhC
Confidence            998875431       11  133678889999999996

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.16  E-value=0.021  Score=56.88  Aligned_cols=76  Identities=16%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeEEEEEecC
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .+..+.|+.|....+|+.. .+++.+-||+-.   ......|..|.+-|+.|.   --.|.+.+++....+..||||||+
T Consensus        19 i~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~---~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l   94 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD-TDGGSYFVKVNS---ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFL   94 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE-TTS-EEEEEEEE---GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE--
T ss_pred             eeeeEecCCCChhheEEEE-CCCccEEEEecC---hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEee
Confidence            3445778999999999987 477889999865   223457888988888873   445778899888777889999999


Q ss_pred             CCC
Q 011175          446 PNN  448 (492)
Q Consensus       446 ~~G  448 (492)
                      +.+
T Consensus        95 ~~~   97 (288)
T PF03881_consen   95 EMG   97 (288)
T ss_dssp             ---
T ss_pred             cCC
Confidence            765

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.12  E-value=0.0037  Score=53.44  Aligned_cols=17  Identities=35%  Similarity=0.796  Sum_probs=8.0

Q ss_pred             HHHHHHHHhhhhccccc
Q 011175          283 SLIGLVVWCLRRRKKEV  299 (492)
Q Consensus       283 ~~l~l~~~~~~rrkk~~  299 (492)
                      ++|+|++||+|||||+.
T Consensus        79 g~Illi~y~irR~~Kk~   95 (122)
T PF01102_consen   79 GIILLISYCIRRLRKKS   95 (122)
T ss_dssp             HHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            34445666666666553

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.90  E-value=0.0051  Score=52.85  Aligned_cols=45  Identities=31%  Similarity=0.480  Sum_probs=35.0

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHh
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR  419 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~  419 (492)
                      .+-||.|+.|+||+|++.+|+.||||+.+.+   -.+.+...+.+|+.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~---i~~~i~~Dl~~l~~   60 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPG---IEEQIEADLRILRR   60 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchH---HHHHHHHHHHHHHH
Confidence            3679999999999999999999999998743   23345556666654

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=95.90  E-value=0.023  Score=55.30  Aligned_cols=95  Identities=12%  Similarity=0.067  Sum_probs=59.2

Q ss_pred             eccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEEecCCCCCHHHH
Q 011175          375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDYVPNNTLYFH  453 (492)
Q Consensus       375 LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~Ey~~~GsL~~~  453 (492)
                      |..|-.+.+|+... +++.++||+..........++.+|.++|+.+...++ -++++++.    .++||||++|..+...
T Consensus         4 ~~~G~tn~~y~~~~-~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~i~G~~~~~~   78 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVNE----HWLLVEWLEGEVITLD   78 (256)
T ss_pred             CCCcCcCCeEEEEe-CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEeccCcccccc
Confidence            55678889998874 667788887653322211246789999998865444 45555432    3689999998665321


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          454 LHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       454 l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .      ..+    ...+.+|++.|.-||+-
T Consensus        79 ~------~~~----~~~~~~la~~l~~lH~~   99 (256)
T TIGR02721        79 Q------FVA----LDLLLELAALLHQLHSQ   99 (256)
T ss_pred             c------ccC----chhHHHHHHHHHHHhCC
Confidence            0      001    12456677777777763

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.89  E-value=0.046  Score=54.83  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             HHHHHHhcCCCc-----cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC--cccceeeEE
Q 011175          360 EELVKATDGFAD-----QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR--HLVSLVGYC  432 (492)
Q Consensus       360 ~~l~~~~~~~~~-----~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp--NIv~l~g~~  432 (492)
                      ++|....+.|.+     .+.|+.|....+|+....+| .+++|+.+...  ..+++..|++++..|.+.  +|.+++..+
T Consensus        10 ~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~-~~vLK~~~~~~--~~~~i~~e~~~l~~L~~~g~pvp~~i~t~   86 (307)
T TIGR00938        10 EEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVG-RYILTLYEKRV--KAEELPFFLALTTHLAARGLPVPKPVKSR   86 (307)
T ss_pred             HHHHHHHHhcCCCCceeccccCCccccceEEEEeCCC-cEEEEEecCCC--CHHHHHHHHHHHHHHHHCCCCCCccccCC
Confidence            444444334433     45677787789999876444 57788765421  233455677777776432  244544421


Q ss_pred             ------EeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          433 ------ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       433 ------~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                            ..++..++||||++|..+..         .+.    ..+.++++.|+.||+.
T Consensus        87 ~g~~~~~~~g~~~~l~e~i~G~~~~~---------~~~----~~~~~~G~~LA~lH~~  131 (307)
T TIGR00938        87 DGRQLSTLAGKPACLVEFLQGLSVGR---------PTA----MHCRPVGEVLAWMHLA  131 (307)
T ss_pred             CCCeehhcCCeEEEEEEeCCCCCCCC---------CCH----HHHHHHHHHHHHHHhh
Confidence                  22456789999999865421         111    1346677777778863

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.56  E-value=0.038  Score=55.19  Aligned_cols=99  Identities=26%  Similarity=0.290  Sum_probs=64.7

Q ss_pred             ceeccCCceeEEEEEcCC-------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPD-------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~-------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.|..|--..||+....+       ++.+++|+..... ....+..+|++++..|...++ .++++++..    .+||||
T Consensus         4 ~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~v~e~   78 (302)
T cd05156           4 SKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV-ELLIDRERELVVFARLSERNLGPKLYGIFPN----GRIEEF   78 (302)
T ss_pred             EEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC-cceechHHHHHHHHHHHhCCCCCceEEEeCC----Cchhhe
Confidence            456667777899988654       4788899875432 223456788888888854444 466665532    368999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      ++|..|......          .-.++.+||+.|+.||+...
T Consensus        79 i~G~~l~~~~~~----------~~~~~~~ia~~L~~lH~~~~  110 (302)
T cd05156          79 IPSRTLTTEELR----------DPDISAEIARRMAKLHSIVV  110 (302)
T ss_pred             eCCCcCCHhHcC----------CcHHHHHHHHHHHHhhCCCC
Confidence            988766432110          12356788999999998543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=95.54  E-value=0.015  Score=50.74  Aligned_cols=10  Identities=30%  Similarity=0.464  Sum_probs=4.2

Q ss_pred             eehhhHHHHH
Q 011175          271 VVIAVAVGII  280 (492)
Q Consensus       271 v~i~v~~~iv  280 (492)
                      ++++|+|++|
T Consensus         3 ~l~~iii~~i   12 (130)
T PF12273_consen    3 VLFAIIIVAI   12 (130)
T ss_pred             eeHHHHHHHH
Confidence            4444444333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PHA03247 large tegument protein UL36; Provisional

Probab=95.52  E-value=9.9  Score=47.67  Aligned_cols=11  Identities=18%  Similarity=0.268  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHh
Q 011175          471 AAGAARGLAYL  481 (492)
Q Consensus       471 a~qIa~gL~YL  481 (492)
                      ...|+.+|.|+
T Consensus      3136 ~~~v~~~l~~v 3146 (3151)
T PHA03247       3136 SGAVLTGLYHV 3146 (3151)
T ss_pred             HHHHHhhhHHH
Confidence            33444444443

>PHA03247 large tegument protein UL36; Provisional

Probab=95.47  E-value=10  Score=47.54  Aligned_cols=10  Identities=20%  Similarity=0.095  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 011175          471 AAGAARGLAY  480 (492)
Q Consensus       471 a~qIa~gL~Y  480 (492)
                      |+.|++-|.|
T Consensus      3118 Cr~i~r~lr~ 3127 (3151)
T PHA03247       3118 CRRIRRQLRR 3127 (3151)
T ss_pred             HHHHHHHHHH
Confidence            3334443433

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.41  E-value=0.12  Score=53.96  Aligned_cols=103  Identities=17%  Similarity=0.085  Sum_probs=63.9

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcc-----cCCC--cchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLK-----IGGG--QGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~-----~~~~--~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .+.||.|....||+... +++.|+||+-.     ....  .....-..|++.|+.+.   .-+|-+++++|.  +..+||
T Consensus        37 ~~eiggGn~N~VyrV~~-~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~vlv  113 (418)
T PLN02756         37 IKEVGDGNLNFVYIVVS-SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMALIG  113 (418)
T ss_pred             EEEcCCCceeeEEEEEc-CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCCEEE
Confidence            46789999999999876 45568898654     1110  12223334466665543   357888998886  556889


Q ss_pred             EecCCC--CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 011175          442 YDYVPN--NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY  480 (492)
Q Consensus       442 ~Ey~~~--GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~Y  480 (492)
                      |||+.+  ..|++.|....   ..-..+.+|...+++.|-|
T Consensus       114 ME~L~~~~~ilr~~Ll~G~---~~p~~a~~ig~~la~tLf~  151 (418)
T PLN02756        114 MRYLEPPHIILRKGLIAGI---EYPLLAEHMSDYMAKTLFF  151 (418)
T ss_pred             EeecCCcceehhhhhccCC---CCHHHHHHHHHHHHHHHhh
Confidence            999977  34555554332   1234445566666666544

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=95.38  E-value=0.0059  Score=63.95  Aligned_cols=73  Identities=19%  Similarity=0.351  Sum_probs=57.7

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      +-+..++|....+||.|+||.|+.+... ++..+|||+|...+... ....++|+.-+.++.|.+|+++...+..
T Consensus        44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   44 TSREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            4445678899999999999999998754 45589999997654433 3468889999999999999988776654

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=95.32  E-value=0.015  Score=38.43  Aligned_cols=26  Identities=19%  Similarity=0.430  Sum_probs=12.1

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhhhccc
Q 011175          272 VIAVAVGIIAFSLIGLVVWCLRRRKK  297 (492)
Q Consensus       272 ~i~v~~~iv~~~~l~l~~~~~~rrkk  297 (492)
                      +++|+++++++++..++..|++||.+
T Consensus         9 Iv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    9 IVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            34454555444444444445444433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PRK05231 homoserine kinase; Provisional

Probab=95.26  E-value=0.15  Score=51.34  Aligned_cols=89  Identities=11%  Similarity=0.069  Sum_probs=50.8

Q ss_pred             cHHHHHHHhcCCCc-----cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc--ccceee
Q 011175          358 TYEELVKATDGFAD-----QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVG  430 (492)
Q Consensus       358 ~~~~l~~~~~~~~~-----~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~l~g  430 (492)
                      +.+++......|.+     .+.|+.|....+|+....+| .+++|++..   ...+++..|+++|..|...+  |.+.+.
T Consensus         8 s~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g-~~vLK~~~~---~~~~~l~~~~~~l~~L~~~glpvP~~i~   83 (319)
T PRK05231          8 SDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQG-EYVLTLFER---LTAEDLPFFLGLMQHLAARGVPVPAPVA   83 (319)
T ss_pred             CHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCC-cEEEEEecc---CChHHhHHHHHHHHHHHHCCCCCCccee
Confidence            34444444344433     34566777788999876555 688888751   12334444556665553222  333332


Q ss_pred             ------EEEeCCeEEEEEecCCCCCH
Q 011175          431 ------YCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       431 ------~~~~~~~~~lV~Ey~~~GsL  450 (492)
                            +....+..++||||++|..+
T Consensus        84 ~~~G~~~~~~~g~~~~l~~~l~G~~~  109 (319)
T PRK05231         84 RRDGAALGELAGKPAAIVTFLEGKWP  109 (319)
T ss_pred             CCCCCEeeeeCCEEEEEEEecCCCCC
Confidence                  12235567899999988743

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=95.15  E-value=0.011  Score=52.03  Aligned_cols=18  Identities=39%  Similarity=0.571  Sum_probs=11.6

Q ss_pred             ceeehhhHHHHHHHHHHH
Q 011175          269 GTVVIAVAVGIIAFSLIG  286 (492)
Q Consensus       269 ~~v~i~v~~~iv~~~~l~  286 (492)
                      ..++||++||+.+.+||+
T Consensus        48 knIVIGvVVGVGg~ill~   65 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLG   65 (154)
T ss_pred             ccEEEEEEecccHHHHHH
Confidence            347788888876544433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=94.61  E-value=0.094  Score=51.18  Aligned_cols=77  Identities=17%  Similarity=0.101  Sum_probs=55.0

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHH---HHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEV---EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei---~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ....+..|..+.|++++..+|..+++|+.....     ++..|.   ..|+..+-...|+|++.-  .+...|+||++..
T Consensus         6 ~~~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~-----~~~~E~~g~~~L~~w~G~GaVrll~~d--~~~~AlLLErl~~   78 (253)
T PF04655_consen    6 PDGPPAHGSSSLVVPVRRADGTPAVLKLAPPHA-----EAEHEARGEAALRWWNGRGAVRLLAAD--PERGALLLERLDP   78 (253)
T ss_pred             cCCCCCCCcceEEEEEEcCCCCeEEEEecCCcc-----cchhhhhHHhHhheeCCCCceeeeccc--cccchhhhhhccC
Confidence            345567799999999998899999999876322     222333   557777878889999864  3456789999965


Q ss_pred             C-CHHHHH
Q 011175          448 N-TLYFHL  454 (492)
Q Consensus       448 G-sL~~~l  454 (492)
                      | +|.++.
T Consensus        79 g~~L~~~~   86 (253)
T PF04655_consen   79 GRSLASLP   86 (253)
T ss_pred             CCchhhcc
Confidence            5 555443

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=94.59  E-value=0.025  Score=58.93  Aligned_cols=38  Identities=29%  Similarity=0.524  Sum_probs=27.6

Q ss_pred             CCCCCCcccceeehhhHHHHHHHHHHHHHHHhhhhccc
Q 011175          260 PSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKK  297 (492)
Q Consensus       260 ~~~~g~~~~~~v~i~v~~~iv~~~~l~l~~~~~~rrkk  297 (492)
                      .+++++++..|+.|+|+++||+-.||+||.|||..|+|
T Consensus       359 ~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk  396 (397)
T PF03302_consen  359 TNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK  396 (397)
T ss_pred             cccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence            34567788777778777777777777878777766654

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=94.51  E-value=0.22  Score=51.05  Aligned_cols=82  Identities=15%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             eeccCCceeEEEEEcCCC-CEEEEEEcc----c-CC--CcchHHHHHHHHHHHhCC--CC-cccceeeEEEeCCeEEEEE
Q 011175          374 LLGEGGFGSVYKGYLPDG-REVAIKQLK----I-GG--GQGEREFKAEVEIISRIH--HR-HLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~g-~~VAVK~l~----~-~~--~~~~~~f~~Ei~il~~l~--Hp-NIv~l~g~~~~~~~~~lV~  442 (492)
                      .||.|....||++...+| +.|+||.-.    . ..  ....+....|.+.|+.++  -+ .+.++|.|  +.+..++||
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--ccccceehH
Confidence            479999999999997654 589999642    2 11  122334556777776652  23 34455543  456667999


Q ss_pred             ecCCCC-CHHHHHhcC
Q 011175          443 DYVPNN-TLYFHLHGE  457 (492)
Q Consensus       443 Ey~~~G-sL~~~l~~~  457 (492)
                      ||+... .|+..|...
T Consensus        80 EdL~~~~ilR~~Li~g   95 (370)
T TIGR01767        80 EDLSHHKIARKGLIEG   95 (370)
T ss_pred             hhCccchHHHHHHHcC
Confidence            999654 455666543

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=94.48  E-value=0.026  Score=49.25  Aligned_cols=18  Identities=22%  Similarity=0.132  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 011175          276 AVGIIAFSLIGLVVWCLR  293 (492)
Q Consensus       276 ~~~iv~~~~l~l~~~~~~  293 (492)
                      +++||+++||+|+++|++
T Consensus         5 ~~iii~~i~l~~~~~~~~   22 (130)
T PF12273_consen    5 FAIIIVAILLFLFLFYCH   22 (130)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344455555555444443

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.03  E-value=0.4  Score=45.96  Aligned_cols=74  Identities=15%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC---CcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH---RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H---pNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      +.|--|..-+.|+..+ +...+-||+-.   ......|..|+.-|..|.-   -+|-+++.+..+.+..||||||++-|.
T Consensus        22 ~~v~gG~inea~~v~d-g~~~~FvK~n~---~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~   97 (286)
T COG3001          22 EEVSGGDINEAWRLRD-GTDPFFVKCNQ---REQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGP   97 (286)
T ss_pred             cccCCccccceeEeec-CCcceEEEecc---hhhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCC
Confidence            4444455445555443 45567787643   2334678888877666643   456788888888899999999998764


Q ss_pred             H
Q 011175          450 L  450 (492)
Q Consensus       450 L  450 (492)
                      +
T Consensus        98 ~   98 (286)
T COG3001          98 L   98 (286)
T ss_pred             C
Confidence            4

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=93.74  E-value=0.28  Score=48.57  Aligned_cols=104  Identities=16%  Similarity=0.036  Sum_probs=60.8

Q ss_pred             eeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC-cc--cceeeEEEeCCeEEEEEecCCCCCH
Q 011175          374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR-HL--VSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       374 ~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp-NI--v~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      .+++|....||.....+|+.++||+-+..  .....+.+|+++|+.|+.. -+  -+++..    +..+++|+++.|..+
T Consensus        18 ~~~~g~~~~v~~i~~~~g~~~VlR~p~~~--~~~~~l~rE~~vL~~L~~~l~vpvP~~~~~----~~~~~~y~~i~G~p~   91 (276)
T cd05152          18 LNESGLDFQVVFAKDTDGVPWVLRIPRRP--DVSERAAAEKRVLALVRKHLPVQVPDWRVH----TPELIAYPKLPGVPA   91 (276)
T ss_pred             ecCCcceeEEEEEEcCCCCeEEEEecCCH--HHHHHHHHHHHHHHHHHhcCCCCCCceeee----cCceEEEeccCCCcc
Confidence            34555555667665456888888876421  2235688999999988532 11  232222    223678999888766


Q ss_pred             HHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPV---LDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~---l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .......+...   .....+..++.++++.|.-||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~la~~la~~La~LH~  127 (276)
T cd05152          92 ATIDPEIGEYVWNFDHKNPPEVFIESLAKALAELHS  127 (276)
T ss_pred             cccCcccccceecccCCCcCHHHHHHHHHHHHHHhC
Confidence            43211111000   0012334578999999999996

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=93.43  E-value=0.23  Score=49.27  Aligned_cols=97  Identities=13%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             ccCCceeEEEEEcC-----CC----CEEEEEEcccCCC-----cchHHHHHHHHHHHhCC---------C----Ccccce
Q 011175          376 GEGGFGSVYKGYLP-----DG----REVAIKQLKIGGG-----QGEREFKAEVEIISRIH---------H----RHLVSL  428 (492)
Q Consensus       376 G~G~fG~Vy~g~~~-----~g----~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~---------H----pNIv~l  428 (492)
                      |+|-.|.+|+..+.     ++    ..+.||.+.....     .....|.+|+.+++.+-         +    ..+-++
T Consensus         2 Gd~y~s~~~rv~v~~~~~~~~~~~~~s~ivK~~p~~~~~~~~~~~~~~f~~E~~fY~~~~p~l~~~~~~~~~~~~~~P~~   81 (294)
T PF02958_consen    2 GDNYLSDMYRVTVTYELKGDGKNEPLSLIVKSPPTNPSRREFLREMGSFRREIFFYRELLPELEELQKEAGDPFKFFPKC   81 (294)
T ss_pred             CCcceeEEEEEEEEEEEccCCCceEEEEEEEeCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccceeeceE
Confidence            77888999988641     11    2478998752211     12245888887766541         1    223444


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAA  475 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa  475 (492)
                      ++...+.+..+||||-+....   +....+...+++.+...++..+|
T Consensus        82 ~~~~~~~~~~~lvlEDL~~~g---~~~~~~~~~l~~~~~~~~l~~LA  125 (294)
T PF02958_consen   82 YYADEDPGDEVLVLEDLSEKG---YRMGDRRDGLDLEHAELVLKKLA  125 (294)
T ss_pred             EEeccCCCceeeehhhhhhcC---CcccccccCCCHHHHHHHHHHHH
Confidence            444444446799999775321   11112234577777655444443

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=92.91  E-value=0.25  Score=46.67  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEE-c-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccce---eeEEEe
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGY-L-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL---VGYCIS  434 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~-~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l---~g~~~~  434 (492)
                      ++++.+..+....+.||.-+-|.+-.|+ + .|...|-||+=+.   ...+.|.-|+.-|..|..-+.|++   +++...
T Consensus         2 ee~l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~---~~~~mfeGE~~sLeAi~sT~tv~vprpikvid~   78 (313)
T KOG3021|consen    2 EELLRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRS---IARDMFEGELASLEAIQSTETVLVPRPIKVIDL   78 (313)
T ss_pred             hHHHHHhcCcceeeeecCCCCceeccccccccCCccEEEEeccc---cchHHHhhHHHHHHHHHhcCceecCCceeeEec
Confidence            3455555555666788885667777775 2 3444677886543   445679999998888876665533   445444


Q ss_pred             -CCeEEEEEecCCCCCHH
Q 011175          435 -DDRRLLIYDYVPNNTLY  451 (492)
Q Consensus       435 -~~~~~lV~Ey~~~GsL~  451 (492)
                       .+..+|||||+.-+.|.
T Consensus        79 p~Ggs~lime~idf~~lr   96 (313)
T KOG3021|consen   79 PGGGSSLIMEHIDFQGLR   96 (313)
T ss_pred             CCCceeeeeehhhcccch
Confidence             66789999999876553

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=92.84  E-value=0.03  Score=41.74  Aligned_cols=6  Identities=33%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             hhhHHH
Q 011175          273 IAVAVG  278 (492)
Q Consensus       273 i~v~~~  278 (492)
                      ++++++
T Consensus        16 aG~Vvg   21 (64)
T PF01034_consen   16 AGGVVG   21 (64)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            333333

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF15345 TMEM51: Transmembrane protein 51

Probab=92.67  E-value=0.44  Score=45.04  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=9.6

Q ss_pred             HHHHHHHhhhhccccccCCC
Q 011175          284 LIGLVVWCLRRRKKEVSGLN  303 (492)
Q Consensus       284 ~l~l~~~~~~rrkk~~~~~~  303 (492)
                      +|+-+|+++|.|||++++.+
T Consensus        72 LLLSICL~IR~KRr~rq~~e   91 (233)
T PF15345_consen   72 LLLSICLSIRDKRRRRQGEE   91 (233)
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            33344555555555444433

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=92.59  E-value=0.19  Score=57.81  Aligned_cols=75  Identities=24%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhCCCCcccceeeEEEeCCeEE----EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          410 FKAEVEIISRIHHRHLVSLVGYCISDDRRL----LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       410 f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~----lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ...|++.+.++.|.|++++++|-.+....-    +.-|||..-+|...+..-+  .+...+.+.++.++.+||+|+|+..
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~--~i~~~~~r~~~~~~~~GL~~~h~~~  306 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVG--SIPLETLRILHQKLLEGLAYLHSLS  306 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhcc--ccCHHHHHHHHHHHhhhHHHHHHhc
Confidence            445777888999999999999877654332    3457888888888886544  3777888888999999999999873


Q ss_pred             C
Q 011175          486 K  486 (492)
Q Consensus       486 k  486 (492)
                      .
T Consensus       307 l  307 (1351)
T KOG1035|consen  307 L  307 (1351)
T ss_pred             c
Confidence            3

>PTZ00384 choline kinase; Provisional

Probab=92.55  E-value=0.36  Score=50.12  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             ceeccCCceeEEEEEcCCC--CE-----EEEEEcccCCCcchHHHHHHHHHHHhCCCCccc-ceeeEEEeCCeEEEEEec
Q 011175          373 NLLGEGGFGSVYKGYLPDG--RE-----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g--~~-----VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.|..|--+.+|++...++  ..     |.++... ......-+-.+|+++++.|.+.++. +++|.+.    .++|+||
T Consensus        56 ~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g-~~~~l~IdR~~E~~i~~~Ls~~glgP~l~~~f~----~g~l~ef  130 (383)
T PTZ00384         56 KKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSS-TYNSLVIDNDLQYNIAKLLGDNNFGPKIIGRFG----DFTIQEW  130 (383)
T ss_pred             EEeCCcccceEEEEEecCCCCCccccceEEEEecc-CCCceEeccHHHHHHHHHHHhCCCCCeEEEecC----CEEEEEE
Confidence            4455677889999876433  22     4444321 1111122446789999999776665 5555542    2699999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ++|..|...-          .....+...||+.|+-||+..
T Consensus       131 IeGr~l~~~d----------l~~p~~~~~IA~~La~lH~~~  161 (383)
T PTZ00384        131 VEGNTMGIDS----------LQNLSVLTGIASSLAKFHKRV  161 (383)
T ss_pred             eccccCChhH----------hcCHHHHHHHHHHHHHHhccc
Confidence            9886542110          112346778899999999843

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.51  E-value=0.088  Score=35.57  Aligned_cols=27  Identities=33%  Similarity=0.317  Sum_probs=15.3

Q ss_pred             cceeehhhHHHHHHHHHHHHHHHhhhhc
Q 011175          268 AGTVVIAVAVGIIAFSLIGLVVWCLRRR  295 (492)
Q Consensus       268 ~~~v~i~v~~~iv~~~~l~l~~~~~~rr  295 (492)
                      +-.+++-+ ++++++++++|++|++|+|
T Consensus        14 a~~VvVPV-~vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   14 AVGVVVPV-GVIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             EEEEEech-HHHHHHHHHHhheEEeccC
Confidence            33344444 4444555666777777765

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=92.38  E-value=0.07  Score=58.78  Aligned_cols=31  Identities=29%  Similarity=0.534  Sum_probs=25.0

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEEc
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL  388 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~  388 (492)
                      +..+|++...+ ..+.+.||+|+||+||.|.-
T Consensus       985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen  985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred             CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence            44567777766 77789999999999999964

>PRK12396 5-methylribose kinase; Reviewed

Probab=92.26  E-value=0.53  Score=48.90  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             cceeccCCceeEEEEEcCC-CCEEEEE------EcccCCCcchHHHHHHHHHHHhC--CCCcccceeeEEEeCCeEEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPD-GREVAIK------QLKIGGGQGEREFKAEVEIISRI--HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~-g~~VAVK------~l~~~~~~~~~~f~~Ei~il~~l--~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .+.||.|....||++.+.+ ++.|+||      ++.....-..+....|.++|+.+  .-+..|.-+ |+.+.+..++||
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~v-y~~D~e~~~~vM  112 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKV-YLFDSVMNCCVM  112 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeE-EEECcHHhhHHH


Q ss_pred             ecC-CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 011175          443 DYV-PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY  480 (492)
Q Consensus       443 Ey~-~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~Y  480 (492)
                      ||+ ....|+..|....   ..-...-+|+.=+|+-+.|
T Consensus       113 EdL~~~~ilR~~Li~G~---~~p~~A~~ig~fla~tlf~  148 (409)
T PRK12396        113 EDLSDHTILRTALINHE---IFPRLADDLTTFLVNTLLL  148 (409)
T ss_pred             HhCcccHHHHHHHHcCC---cChhHHHHHHHHHHHHHhh

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=92.21  E-value=0.17  Score=33.91  Aligned_cols=31  Identities=16%  Similarity=0.521  Sum_probs=0.0

Q ss_pred             cceeehhhHHHHHHHHHHHHHHHhhhhcccc
Q 011175          268 AGTVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (492)
Q Consensus       268 ~~~v~i~v~~~iv~~~~l~l~~~~~~rrkk~  298 (492)
                      +|.+++.++++++++.+++++++.+|..||+
T Consensus         8 ~GVIlVF~lVglv~i~iva~~iYRKw~aRkr   38 (43)
T PF08114_consen    8 GGVILVFCLVGLVGIGIVALFIYRKWQARKR   38 (43)
T ss_pred             CCeeeehHHHHHHHHHHHHHHHHHHHHHHHH

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-29
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-28
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-20
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-20
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-19
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-19
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-19
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-18
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		6e-10
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		6e-10
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		6e-10
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		8e-09
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-08
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-08
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-08
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-08
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-08
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-08
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		6e-08
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		9e-08
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-07
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		7e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		7e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		8e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		9e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		9e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-06
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-06
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		2e-06
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-06
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-06
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-06
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-06
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-06
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-06
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-06
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-06
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		3e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-06
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-06
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-06
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-06
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-06
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-06
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-06
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		4e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		4e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		5e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		8e-06
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		8e-06
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		8e-06
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		8e-06
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		8e-06
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		8e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		9e-06
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		9e-06
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		9e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		9e-06
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		9e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		9e-06
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		9e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		9e-06
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		9e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		1e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		1e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		1e-05
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		1e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		1e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-05
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		1e-05
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		1e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-05
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		1e-05
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-05
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		1e-05
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		1e-05
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-05
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		1e-05
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-05
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-05
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		1e-05
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-05
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		2e-05
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		2e-05
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		2e-05
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-05
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		2e-05
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		2e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		3e-05
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-05
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		3e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-05
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-05
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-05
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-05
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		3e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		3e-05
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		3e-05
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		4e-05
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		4e-05
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		5e-05
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		5e-05
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		5e-05
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		5e-05
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		5e-05
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		5e-05
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		5e-05
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		5e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		5e-05
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		5e-05
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		5e-05
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		5e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		6e-05
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		6e-05
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		6e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		7e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		7e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		7e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		7e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		8e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		8e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		8e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		8e-05
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		9e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		9e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		1e-04
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		1e-04
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		2e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		2e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		2e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		2e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		2e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		2e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		2e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		2e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		2e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		2e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		2e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		2e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		3e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		3e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		3e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		4e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		4e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		4e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		4e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		5e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		5e-04
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		5e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		6e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		6e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		6e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		6e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		6e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		6e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		7e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		8e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		8e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		8e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		8e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		8e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		9e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		9e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		9e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  124 bits (312), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 336 PGSDFVNSP--QDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
           P   F + P  +DP         F+  EL  A+D F+++N+LG GGFG VYKG L DG  
Sbjct: 5   PQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTL 64
Query: 394 VAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYF 452
           VA+K+LK    Q GE +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++  
Sbjct: 65  VAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS 124
Query: 453 HLHG--EGRPVLDWATRVKIAAGAARGLAYLHEDC 485
            L    E +P LDW  R +IA G+ARGLAYLH+ C
Sbjct: 125 CLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC 159

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 341 VNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLK 400
           V + +DP         F+  EL  A+D F ++N+LG GGFG VYKG L DG  VA+K+LK
Sbjct: 4   VPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK 63
Query: 401 IGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG--E 457
               Q GE +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++   L    E
Sbjct: 64  EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE 123
Query: 458 GRPVLDWATRVKIAAGAARGLAYLHEDC 485
            +P LDW  R +IA G+ARGLAYLH+ C
Sbjct: 124 SQPPLDWPKRQRIALGSARGLAYLHDHC 151

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI 420
           +L +AT+ F  + L+G G FG VYKG L DG +VA+K+      QG  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV--LDWATRVKIAAGAARGL 478
            H HLVSL+G+C   +  +LIY Y+ N  L  HL+G   P   + W  R++I  GAARGL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 479 AYLH 482
            YLH
Sbjct: 153 HYLH 156

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI 420
           +L +AT+ F  + L+G G FG VYKG L DG +VA+K+      QG  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPV--LDWATRVKIAAGAARGL 478
            H HLVSL+G+C   +  +LIY Y+ N  L  HL+G   P   + W  R++I  GAARGL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 479 AYLH 482
            YLH
Sbjct: 153 HYLH 156

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 12/139 (8%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWA 465
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L   L   +G P L W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 466 TRVKIAAGAARGLAYLHED 484
            R KIA GAA G+ +LHE+
Sbjct: 134 MRCKIAQGAANGINFLHEN 152

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 12/139 (8%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWA 465
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L   L   +G P L W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 466 TRVKIAAGAARGLAYLHED 484
            R KIA GAA G+ +LHE+
Sbjct: 134 MRCKIAQGAANGINFLHEN 152

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 12/139 (8%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWA 465
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L   L   +G P L W 
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 466 TRVKIAAGAARGLAYLHED 484
            R KIA GAA G+ +LHE+
Sbjct: 128 MRCKIAQGAANGINFLHEN 146

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 12/139 (8%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N  GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 64
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWA 465
           +++F  E+++ ++  H +LV L+G+    D   L+Y Y PN +L   L   +G P L W 
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWH 124
Query: 466 TRVKIAAGAARGLAYLHED 484
            R KIA GAA G+ +LHE+
Sbjct: 125 XRCKIAQGAANGINFLHEN 143

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR 476
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  +  P+  W+ ++++    A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPI-KWSVKLRLMLDIAL 133
Query: 477 GLAYLH 482
           G+ Y+ 
Sbjct: 134 GIEYMQ 139

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR 476
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  +  P+  W+ ++++    A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPI-KWSVKLRLMLDIAL 133
Query: 477 GLAYLH 482
           G+ Y+ 
Sbjct: 134 GIEYMQ 139

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR 476
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  +  P+  W+ ++++    A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPI-KWSVKLRLMLDIAL 133
Query: 477 GLAYLH 482
           G+ Y+ 
Sbjct: 134 GIEYMQ 139

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 343 SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGREV----AIK 397
            P  P G   +++      ++K T+      +LG G FG+VYKG ++P+G  V    AIK
Sbjct: 18  EPLTPSGTAPNQAQL---RILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIK 73
Query: 398 QL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHL 454
            L +  G +   EF  E  I++ + H HLV L+G C+S   + L+   +P+  L  Y H 
Sbjct: 74  ILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHE 132
Query: 455 HGEG---RPVLDWATRVKIAAGAARGLAYLHE 483
           H +    + +L+W  ++      A+G+ YL E
Sbjct: 133 HKDNIGSQLLLNWCVQI------AKGMMYLEE 158

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK +K  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+++++ +  L  +L  + R +    T + +      G+AYL E C
Sbjct: 94  QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC 143

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 18/122 (14%)
Query: 373 NLLGEGGFGSVYKG-YLPDGREV----AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLV 426
            +LG G FG+VYKG ++P+G  V    AIK L +  G +   EF  E  I++ + H HLV
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 80
Query: 427 SLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKIAAGAARGLAYL 481
            L+G C+S   + L+   +P+  L  Y H H +    + +L+W  ++      A+G+ YL
Sbjct: 81  RLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQI------AKGMMYL 133
Query: 482 HE 483
            E
Sbjct: 134 EE 135

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+++++ +  L  +L  + R +    T + +      G+AYL E C
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC 123

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+++++ +  L  +L  + R +    T + +      G+AYL E C
Sbjct: 72  QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC 121

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+++++ +  L  +L  + R +    T + +      G+AYL E C
Sbjct: 77  QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC 126

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER--EFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+V++     G +VA+K L       ER  EF  EV I+ R+ H ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLH 482
                  ++ +Y+   +LY  LH  G R  LD   R+ +A   A+G+ YLH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH 154

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER--EFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+V++     G +VA+K L       ER  EF  EV I+ R+ H ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLH 482
                  ++ +Y+   +LY  LH  G R  LD   R+ +A   A+G+ YLH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH 154

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F  E E+++ + H H+V  
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG-------EGRP--VLDWATRVKIAAGAARG 477
            G C+  D  +++++Y+ +  L  +   HG       EG P   L  +  + IA   A G
Sbjct: 81  YGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAG 140
Query: 478 LAYL 481
           + YL
Sbjct: 141 MVYL 144

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                L+ +++ +  L  +L  + R +    T + +      G+AYL E C
Sbjct: 75  QAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEAC 124

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                L+++++ +  L  +L  + R +    T + +      G+AYL E
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEE 121

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           D      L+G G +G+VYKG L D R VA+K       Q    F  E  I  R+      
Sbjct: 13  DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN---FINEKNIY-RVPLMEHD 67
Query: 427 SLVGYCISDDR--------RLLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAAR 476
           ++  + + D+R         LL+ +Y PN +L  Y  LH       DW +  ++A    R
Sbjct: 68  NIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS-----DWVSSCRLAHSVTR 122
Query: 477 GLAYLHED 484
           GLAYLH +
Sbjct: 123 GLAYLHTE 130

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
           + ++G G FG V K      ++VAIKQ++    + ER+ F  E+  +SR++H ++V L G
Sbjct: 14  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYG 69
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLH 482
            C+  +   L+ +Y    +LY  LHG E  P    A  +      ++G+AYLH
Sbjct: 70  ACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLH 120

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ +I H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKIRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
           + ++G G FG V K      ++VAIKQ++    + ER+ F  E+  +SR++H ++V L G
Sbjct: 13  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYG 68
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLH 482
            C+  +   L+ +Y    +LY  LHG E  P    A  +      ++G+AYLH
Sbjct: 69  ACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLH 119

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 74  EEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 121

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 76
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 77  EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 124

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 20  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   ARG+ YLH
Sbjct: 78  -TKPQLAIVTQWCEGSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLH 125

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   ARG+ YLH
Sbjct: 90  -TKPQLAIVTQWCEGSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLH 137

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 249
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 297

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 249
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 297

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 250
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 251 EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 298

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   ARG+ YLH
Sbjct: 90  TA-PQLAIVTQWCEGSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLH 137

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 72
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 120

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 74
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 75  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 122

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 332
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 333 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 380

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VAIK LK G    E  F  E +I+ ++ H  LV L    +S
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE-SFLEEAQIMKKLKHDKLVQLYA-VVS 74
Query: 435 DDRRLLIYDYVPNNTLY-FHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L  F   GEGR  L     V +AA  A G+AY+ 
Sbjct: 75  EEPIYIVTEYMNKGSLLDFLKDGEGR-ALKLPNLVDMAAQVAAGMAYIE 122

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAER---IDHIKLLQYTSQICKGMEYL 133

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+    L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+    L   L GE    L     V +AA  A G+AY+ 
Sbjct: 84  EEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE 131

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEG 458
            G C      L++++Y+ +  L   L   G
Sbjct: 86  FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 115

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K LK+     E  + F+ EV ++ +  H +++  +GY 
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGY- 100
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++ D   ++  +   ++LY HLH +          + IA   A+G+ YLH
Sbjct: 101 MTKDNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH 149

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 249
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+ 
Sbjct: 250 EEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 297

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 161

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEG 458
            G C      L++++Y+ +  L   L   G
Sbjct: 80  FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 109

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 80
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V ++A  A G+AY+ 
Sbjct: 81  EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE 128

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ ++ H  LV L    +S
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKLRHEKLVQLYA-VVS 80
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   ++ +Y+   +L   L GE    L     V ++A  A G+AY+ 
Sbjct: 81  EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE 128

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 77  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 129

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 82  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 134

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 84  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 136

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 130

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 133

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 130

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 79  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 131

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEG 458
            G C      L++++Y+ +  L   L   G
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 138

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 130

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 148

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 83  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 135

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 85  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 137

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 76  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 128

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +Y+P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER---IDHIKLLQYTSQICKGMEYL 148

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKI--GGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           L E   G ++KG    G ++ +K LK+     +  R+F  E   +    H +++ ++G C
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 433 ISDD--RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            S       LI  ++P  +LY  LH     V+D +  VK A   ARG+A+LH
Sbjct: 77  QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH 128

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG-------EGRP-----VLDWATRVKIAAGA 474
            G C   D  +++++Y+ +  L  +   HG       +G+P      L  +  + IA+  
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 142
Query: 475 ARGLAYL 481
           A G+ YL
Sbjct: 143 ASGMVYL 149

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVS 427
           + ++G GGFG VY+ +   G EVA+K  +        Q     + E ++ + + H ++++
Sbjct: 12  EEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP---VLDWATRVKIAAGAARGLAYLHED 484
           L G C+ +    L+ ++     L   L G+  P   +++WA ++      ARG+ YLH++
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQI------ARGMNYLHDE 124
Query: 485 C 485
Sbjct: 125 A 125

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 375 LGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G C S  RR   LI +++P  +L  Y   H E    +D    ++  +   +G+ YL
Sbjct: 81  GVCYSAGRRNLKLIMEFLPYGSLREYLQKHKER---IDHIKLLQYTSQICKGMEYL 133

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 87
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 88  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 136

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 74
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 75  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 123

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 22/148 (14%)
Query: 347 PGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKI 401
           P G   ++++     ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+ 
Sbjct: 3   PSGEAPNQALL---RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE 58
Query: 402 GGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG 458
               +  +E   E  +++ + + H+  L+G C++   + LI   +P   L  Y   H + 
Sbjct: 59  ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDN 117
Query: 459 ---RPVLDWATRVKIAAGAARGLAYLHE 483
              + +L+W  ++      A+G+ YL +
Sbjct: 118 IGSQYLLNWCVQI------AKGMNYLED 139

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 79
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 80  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 128

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 80
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 81  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 129

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 84
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 85  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 78
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 84
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 85  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 29  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 86
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 87  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 135

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 74  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 122

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 84  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 132

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 78
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 88
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 89  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 137

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 78
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLKI-GGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 429 VGYCISD--DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            G C  D  +   LI +++P+ +L  +L  + +  ++   ++K A    +G+ YL
Sbjct: 77  KGICTEDGGNGIKLIMEFLPSGSLKEYL-PKNKNKINLKQQLKYAVQICKGMDYL 130

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLKI-GGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 429 VGYCISD--DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            G C  D  +   LI +++P+ +L  +L  + +  ++   ++K A    +G+ YL
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSLKEYL-PKNKNKINLKQQLKYAVQICKGMDYL 142

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 129
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 130 ----AKGMNYLED 138

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 15  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 73
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 74  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 130
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 131 ----AKGMNYLED 139

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 128
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 129 ----AKGMNYLED 137

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 128
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 129 ----AKGMNYLED 137

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 71  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 127
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 128 ----AKGMNYLED 136

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 128
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 129 ----AKGMNYLED 137

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 71  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQI-- 127
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 128 ----AKGMNYLED 136

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 129
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 130 ----AKGMNYLED 138

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 21  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 79
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 80  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 136
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 137 ----AKGMNYLED 145

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 17  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 75
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 76  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 132
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 133 ----AKGMNYLED 141

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 133
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 134 ----AKGMNYLED 142

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 129
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 130 ----AKGMNYLED 138

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 129
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 130 ----AKGMNYLED 138

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 128
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 129 ----AKGMNYLED 137

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 120
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 121 ----AKGMNYLED 129

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 36  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 94
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 95  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 151
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 152 ----AKGMNYLED 160

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 133
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 134 ----AKGMNYLED 142

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 128
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 129 ----AKGMNYLED 137

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 374 LLGEGGFGSVYK-GYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG+G FG   K  +   G  + +K+L     + +R F  EV+++  + H +++  +G  
Sbjct: 17  VLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVL 76
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             D R   I +Y+   TL   +         W+ RV  A   A G+AYLH
Sbjct: 77  YKDKRLNFITEYIKGGTLRGIIKSMDSQ-YPWSQRVSFAKDIASGMAYLH 125

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 343 SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIK 397
            P  P G   ++++     ++K T+ F    +LG G FG+VYKG ++P+G +    VAI 
Sbjct: 29  EPLTPSGEAPNQALL---RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIM 84
Query: 398 QLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHL 454
           +L+     +  +E   E  +++ + + H+  L+G C++   + LI   +P   L  Y   
Sbjct: 85  ELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVRE 143
Query: 455 HGEG---RPVLDWATRVKIAAGAARGLAYLHE 483
           H +    + +L+W  ++      A+G+ YL +
Sbjct: 144 HKDNIGSQYLLNWCVQI------AKGMNYLED 169

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKI--GGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           L E   G ++KG    G ++ +K LK+     +  R+F  E   +    H +++ ++G C
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 433 ISDD--RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            S       LI  + P  +LY  LH     V+D +  VK A   ARG A+LH
Sbjct: 77  QSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXARGXAFLH 128

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLY--------------FHLHGEGRPVLDWATRVKIAA 472
           +L+G C       L  +Y P+  L               F +       L     +  AA
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149
Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 150 DVARGMDYLSQ 160

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLY--------------FHLHGEGRPVLDWATRVKIAA 472
           +L+G C       L  +Y P+  L               F +       L     +  AA
Sbjct: 87  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 146
Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 147 DVARGMDYLSQ 157

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLY--------------FHLHGEGRPVLDWATRVKIAA 472
           +L+G C       L  +Y P+  L               F +       L     +  AA
Sbjct: 80  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 139
Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 140 DVARGMDYLSQ 150

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 21  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 79  -TKPQLAIVTQWCEGSSLYHHLH-IIETKFEMIKLIDIARQTAQGMDYLH 126

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 74  -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 121

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 8   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 66
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 67  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 123
Query: 471 AAGAARGLAYLHE 483
               A G+ YL +
Sbjct: 124 ----AEGMNYLED 132

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 74  -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 121

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 18  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 76  -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 123

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 21  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 79  -TKPQLAIVTQWCEGSSLYHHLH-IIETKFEMIKLIDIARQTAQGMDYLH 126

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 375 LGEGGFGSV-YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P     G  VA+K LK G G   R  ++ E+EI+  ++H H+V  
Sbjct: 17  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            G C     +   L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH
Sbjct: 77  KGCCEDQGEKSVQLVMEYVPLGSLRDYL---PRHCVGLAQLLLFAQQICEGMAYLH 129

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 375 LGEGGFGSV-YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P     G  VA+K LK G G   R  ++ E+EI+  ++H H+V  
Sbjct: 16  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            G C     +   L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH
Sbjct: 76  KGCCEDQGEKSVQLVMEYVPLGSLRDYL---PRHCVGLAQLLLFAQQICEGMAYLH 128

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 36  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 93
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 94  -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 141

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+++H+++V 
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 112
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 113 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 171
Query: 482 HED 484
            E+
Sbjct: 172 EEN 174

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 74  TA-PQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 121

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+++H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 99  CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 157
Query: 482 HED 484
            E+
Sbjct: 158 EEN 160

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 43  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 100
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 101 -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 148

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 102 -TKPQLAIVTQWCEGSSLYHHLH-IIETKFEMIKLIDIARQTAQGMDYLH 149

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH
Sbjct: 102 -TKPQLAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLH 149

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VA+K +K  G   E EF  E + + ++ H  LV   G C  
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 435 DDRRLLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           +    ++ +Y+ N  L  Y   HG+G   L+ +  +++      G+A+L
Sbjct: 75  EYPIYIVTEYISNGCLLNYLRSHGKG---LEPSQLLEMCYDVCEGMAFL 120

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 133
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 134 ----AKGMNYLED 142

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 112
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 113 CIGVSLQSLPRFILMELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 171
Query: 482 HED 484
            E+
Sbjct: 172 EEN 174

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 139 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 197
Query: 482 HED 484
            E+
Sbjct: 198 EEN 200

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 156
Query: 482 HED 484
            E+
Sbjct: 157 EEN 159

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 98  CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 156
Query: 482 HED 484
            E+
Sbjct: 157 EEN 159

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 55  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 114
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 115 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 173
Query: 482 HED 484
            E+
Sbjct: 174 EEN 176

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 99  CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 157
Query: 482 HED 484
            E+
Sbjct: 158 EEN 160

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 30  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 89
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 90  CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 148
Query: 482 HED 484
            E+
Sbjct: 149 EEN 151

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 56  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 115
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 116 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 174
Query: 482 HED 484
            E+
Sbjct: 175 EEN 177

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 126
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 127 ----AKGMNYLED 135

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 45  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 104
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 105 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 163
Query: 482 HED 484
            E+
Sbjct: 164 EEN 166

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL--YFHLHGEG---RPVLDWATRVKI 470
           +++ + + H+  L+G C++   + LI   +P   L  Y   H +    + +L+W  ++  
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI-- 133
Query: 471 AAGAARGLAYLHE 483
               A+G+ YL +
Sbjct: 134 ----AKGMNYLED 142

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 99  CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 157
Query: 482 HED 484
            E+
Sbjct: 158 EEN 160

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY  +  +VA+K LK  G    + F  E  ++  + H  LV L      
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTR 79
Query: 435 DDRRLLIYDYVPNNTLY-FHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   +I +Y+   +L  F    EG  VL     +  +A  A G+AY+ 
Sbjct: 80  EEPIYIITEYMAKGSLLDFLKSDEGGKVL-LPKLIDFSAQIAEGMAYIE 127

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVG 430
            L+G+G FG VY G      EVAI+ + I     +  + FK EV    +  H ++V  +G
Sbjct: 39  ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            C+S     +I       TLY  +  + + VLD     +IA    +G+ YLH
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVR-DAKIVLDVNKTRQIAQEIVKGMGYLH 147

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 65  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 124
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 125 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 183
Query: 482 HED 484
            E+
Sbjct: 184 EEN 186

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                +I +Y+ N  L  +L  E R        +++       + YL 
Sbjct: 91  QRPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLE 137

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                +I +Y+ N  L  +L  E R        +++       + YL 
Sbjct: 91  QRPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLE 137

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
Query: 435 DDRRLLIYDYVPNNTLYFHLHG-----EGRPVLDWATRVKIAAGAARGLAYLHED 484
                +I +Y+ N  L  +L       + + +L+    V  A        +LH D
Sbjct: 71  QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRD 125

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 375 LGEGGFGSV-YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P     G  VA+K LK   G   R  +K E++I+  ++H H++  
Sbjct: 22  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            G C     +   L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH
Sbjct: 82  KGCCEDQGEKSLQLVMEYVPLGSLRDYL---PRHSIGLAQLLLFAQQICEGMAYLH 134

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                +I +Y+ N  L  +L  E R        +++       + YL 
Sbjct: 76  QRPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLE 122

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
Query: 435 DDRRLLIYDYVPNNTLYFHLHG-----EGRPVLDWATRVKIAAGAARGLAYLHED 484
                +I +Y+ N  L  +L       + + +L+    V  A        +LH D
Sbjct: 75  QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRD 129

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 375 LGEGGFGSV-YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P     G  VA+K LK   G   R  +K E++I+  ++H H++  
Sbjct: 22  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            G C     +   L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH
Sbjct: 82  KGCCEDQGEKSLQLVMEYVPLGSLRDYL---PRHSIGLAQLLLFAQQICEGMAYLH 134

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 435 DDRRLLIYDYVPNNTLYFHLHG-----EGRPVLDWATRVKIAAGAARGLAYLHED 484
                +I +Y+ N  L  +L       + + +L+    V  A        +LH D
Sbjct: 76  QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRD 130

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                +I +Y+ N  L  +L  E R        +++       + YL 
Sbjct: 82  QRPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLE 128

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVR 112
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP------VLDWATRVKIAAGAARGLAYL 481
            +G  +    R ++ + +    L   L  E RP       L     + +A   A G  YL
Sbjct: 113 CIGVSLQSLPRFILLELMAGGDLKSFLR-ETRPRPSQPSSLAMLDLLHVARDIACGCQYL 171
Query: 482 HED 484
            E+
Sbjct: 172 EEN 174

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G  G V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 21  LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 78
Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY  +  +VA+K LK  G    + F  E  ++  + H  LV L      
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 435 DDRRLLIYDYVPNNTLY-FHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++   +I +++   +L  F    EG  VL     +  +A  A G+AY+ 
Sbjct: 79  EEPIYIITEFMAKGSLLDFLKSDEGGKVL-LPKLIDFSAQIAEGMAYIE 126

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 356 MFTYEELVKATDGFADQNLLGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER- 408
           +F  +E   A +       LG+G FG VY    KG + D  E  VAIK +       ER 
Sbjct: 5   VFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 409 EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL- 462
           EF  E  ++   +  H+V L+G        L+I + +    L  +L       E  PVL 
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 124
Query: 463 --DWATRVKIAAGAARGLAYLH 482
               +  +++A   A G+AYL+
Sbjct: 125 PPSLSKMIQMAGEIADGMAYLN 146

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 47  QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 101
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 102 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 156

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 34  QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 88
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 89  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 143

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 9   QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 63
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 64  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 118

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 14  QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 68
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 69  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 123

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 8   QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 62
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 63  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 117

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K   I   + ER +  E EI   +  RH  +++G+
Sbjct: 11  QESIGKGRFGEVWRGKWR-GEEVAVK---IFSSREERSWFREAEIYQTVMLRH-ENILGF 65
Query: 432 CISDDRR-------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             +D++         L+ DY  + +L+ +L+   R  +     +K+A   A GLA+LH
Sbjct: 66  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLH 120

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 18  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 77
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 78  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 137
Query: 480 YLH 482
           YL+
Sbjct: 138 YLN 140

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 27  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 86
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 87  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 146
Query: 480 YLH 482
           YL+
Sbjct: 147 YLN 149

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 93  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 152
Query: 480 YLH 482
           YL+
Sbjct: 153 YLN 155

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 375 LGEGGFGSV-YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P     G  VA+K LK   G   R  +K E++I+  ++H H++  
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98
Query: 429 VGYC--ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            G C         L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH
Sbjct: 99  KGCCEDAGAASLQLVMEYVPLGSLRDYL---PRHSIGLAQLLLFAQQICEGMAYLH 151

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 26  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 85
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 86  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 145
Query: 480 YLHED 484
           YL+ +
Sbjct: 146 YLNAN 150

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EF+ E  + +R+ H ++V 
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    D    +I+ Y  +  L+
Sbjct: 94  LLGVVTKDQPLSMIFSYCSHGDLH 117

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 375 LGEGGFGSV-YKGYLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 19  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 78
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G      R+   L+ +Y+P+  L   L    R  LD +  +  ++   +G+ YL
Sbjct: 79  GVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYL 131

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 375 LGEGGFGSV-YKGYLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 18  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 77
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G      R+   L+ +Y+P+  L   L    R  LD +  +  ++   +G+ YL
Sbjct: 78  GVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYL 130

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 20  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 79
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 80  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 139
Query: 480 YLHED 484
           YL+ +
Sbjct: 140 YLNAN 144

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 26  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 85
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 86  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 145
Query: 480 YLH 482
           YL+
Sbjct: 146 YLN 148

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 27  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 86
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 87  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 146
Query: 480 YLHED 484
           YL+ +
Sbjct: 147 YLNAN 151

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 375 LGEGGFGSV-YKGYLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           G      R+   L+ +Y+P+  L   L    R  LD +  +  ++   +G+ YL
Sbjct: 91  GVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYL 143

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EF+ E  + +R+ H ++V 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    D    +I+ Y  +  L+
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLH 100

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 20  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 79
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 80  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 139
Query: 480 YLHED 484
           YL+ +
Sbjct: 140 YLNAN 144

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY    KG + D  E  VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 55  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 114
Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHG-----EGRPVL---DWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L       E  PVL     +  +++A   A G+A
Sbjct: 115 LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMA 174
Query: 480 YLHED 484
           YL+ +
Sbjct: 175 YLNAN 179

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGR----EVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGR----EVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGR----EVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 367 DGFADQNLLGEGGFGSVY-----KGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH 421
           D F     LG+G FG+VY     K +     +V  K  +I     E + + E+EI + +H
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKS-QIEKEGVEHQLRREIEIQAHLH 81
Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           H +++ L  Y     R  LI +Y P   LY  L        D      I    A  L Y 
Sbjct: 82  HPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSC--TFDEQRTATIMEELADALMYC 139
Query: 482 H 482
           H
Sbjct: 140 H 140

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 372 QNLLGEGGFGSVYKGYL--PDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
           Q ++G G FG VYKG L    G++   VAIK LK G  + +R +F  E  I+ +  H ++
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108
Query: 426 VSLVGYCISDDRRLLIYDYVPNNTL-YFHLHGEGR-PVLDWATRVK-IAAGAA--RGLAY 480
           + L G        ++I +Y+ N  L  F    +G   VL     ++ IAAG      + Y
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY 168
Query: 481 LHED 484
           +H D
Sbjct: 169 VHRD 172

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY     + + + A+K L   ++     E + + EVEI S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 123
Query: 481 LH 482
            H
Sbjct: 124 CH 125

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 373 NLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLV 426
            +LG G FG+VYKG ++PDG      VAIK L+     +  +E   E  +++ +   ++ 
Sbjct: 23  KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVS 82
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHL-HGEGR----PVLDWATRVKIAAGAARGLAYL 481
            L+G C++   + L+   +P   L  H+    GR     +L+W  ++      A+G++YL
Sbjct: 83  RLLGICLTSTVQ-LVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQI------AKGMSYL 135
Query: 482 HE 483
            +
Sbjct: 136 ED 137

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 375 LGEGGFGSV-YKGYLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL- 428
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 15  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 74
Query: 429 -VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
            V Y        L+ +Y+P+  L   L    R  LD +  +  ++   +G+ YL
Sbjct: 75  GVSYGPGRPELRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYL 127

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  + 
Sbjct: 20  IGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 76
Query: 435 DDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +   L ++ +Y+   +L  +L   GR VL     +K +      + YL 
Sbjct: 77  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 125

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 375 LGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           LG+G F  ++KG   +          EV +K L          F     ++S++ H+HLV
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
              G C+  D  +L+ ++V   +L  +L  + +  ++   ++++A   A  + +L E+
Sbjct: 76  LNYGVCVCGDENILVQEFVKFGSLDTYL-KKNKNCINILWKLEVAKQLAAAMHFLEEN 132

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  + 
Sbjct: 29  IGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 85
Query: 435 DDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +   L ++ +Y+   +L  +L   GR VL     +K +      + YL 
Sbjct: 86  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 134

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G +G VY G        VA+K LK    + E EF  E  ++  I H +LV L+G C 
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGVCT 98
Query: 434 SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +    ++ +Y+P   L  +L    R  +     + +A   +  + YL +
Sbjct: 99  LEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEK 148

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  + 
Sbjct: 14  IGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 70
Query: 435 DDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +   L ++ +Y+   +L  +L   GR VL     +K +      + YL 
Sbjct: 71  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 119

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  + 
Sbjct: 201 IGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 257
Query: 435 DDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           +   L ++ +Y+   +L  +L   GR VL     +K +      + YL 
Sbjct: 258 EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 306

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 373 NLLGEGGFGSVYKG-YLPDGREVAIKQL--KIGGGQGEREFKAEVE---IISRIHHRHLV 426
            +LG G FG+V+KG ++P+G  + I      I    G + F+A  +    I  + H H+V
Sbjct: 37  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 96
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGE-----GRPVLDWATRVKIAAGAARGLAYL 481
            L+G C     + L+  Y+P  +L  H+         + +L+W  ++      A+G+ YL
Sbjct: 97  RLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQI------AKGMYYL 149
Query: 482 HE 483
            E
Sbjct: 150 EE 151

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 373 NLLGEGGFGSVYKG-YLPDGREVAIKQL--KIGGGQGEREFKAEVE---IISRIHHRHLV 426
            +LG G FG+V+KG ++P+G  + I      I    G + F+A  +    I  + H H+V
Sbjct: 19  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGE-----GRPVLDWATRVKIAAGAARGLAYL 481
            L+G C     + L+  Y+P  +L  H+         + +L+W  ++      A+G+ YL
Sbjct: 79  RLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQI------AKGMYYL 131
Query: 482 HE 483
            E
Sbjct: 132 EE 133

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG+VY       + + A+K L   ++     E + + EVEI S + H +++ L G
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           Y     R  LI +Y P  T+Y  L    R   D           A  L+Y H
Sbjct: 80  YFHDATRVYLILEYAPLGTVYRELQKLSR--FDEQRTATYITELANALSYCH 129

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 123
Query: 481 LH 482
            H
Sbjct: 124 CH 125

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 149
Query: 481 LH 482
            H
Sbjct: 150 CH 151

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 126
Query: 481 LH 482
            H
Sbjct: 127 CH 128

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 375 LGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG+VY       + + A+K L   ++     E + + EVEI S + H +++ L G
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           Y     R  LI +Y P  T+Y  L    R   D           A  L+Y H
Sbjct: 80  YFHDATRVYLILEYAPLGTVYRELQKLSR--FDEQRTATYITELANALSYCH 129

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 125
Query: 481 LH 482
            H
Sbjct: 126 CH 127

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 123
Query: 481 LH 482
            H
Sbjct: 124 CH 125

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 128
Query: 481 LH 482
            H
Sbjct: 129 CH 130

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 126
Query: 481 LH 482
            H
Sbjct: 127 CH 128

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 126
Query: 481 LH 482
            H
Sbjct: 127 CH 128

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 123
Query: 481 LH 482
            H
Sbjct: 124 CH 125

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYLPDGREV-AIKQL---KIGGGQGEREFKAEVEIISRI 420
           A + F     LG+G FG+VY       + + A+K L   ++     E + + EVEI S +
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
            H +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSY 122
Query: 481 LH 482
            H
Sbjct: 123 CH 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-92
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-86
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-81
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-42
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-32
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-28
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-28
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-26
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-26
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-26
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-25
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-25
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-25
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-25
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-25
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-24
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-23
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-21
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-20
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-20
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-24
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-24
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-23
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-23
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-18
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-20
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	5e-20
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-19
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-19
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-19
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	8e-19
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	9e-19
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-18
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-18
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-18
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	6e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-18
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	7e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	8e-18
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-17
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-17
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-16
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-16
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-16
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-16
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-16
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-16
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-16
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	6e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	6e-16
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-16
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-15
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-15
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-15
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-15
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-15
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-14
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-15
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-15
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-15
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-15
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-14
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-14
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-14
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-14
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-13
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-13
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-13
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-13
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-13
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-13
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-12
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-11
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-11
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-11
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-11
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-11
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	9e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-10
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	8e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	8e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	9e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-10
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	4e-10
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	6e-08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	3e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-08
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	4e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-08
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	8e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	8e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	9e-08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	9e-08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-07
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	2e-07
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	8e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	8e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-07
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	6e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	8e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	8e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-06
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	5e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	6e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	6e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	7e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-05
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-05
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-05
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	5e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	7e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	3e-04
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	8e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	1e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	3e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	5e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-05
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	6e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	9e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	9e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-04
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	2e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-04
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-04
3vf0_A	283	Vinculin, metavinculin; cytoskeletal F-actin bindi	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	7e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  283 bits (726), Expect = 2e-92
 Identities = 70/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)

Query: 341 VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQL 399
           V + +DP   LG  +  F+  EL  A+D F+++N+LG GGFG VYKG L DG  VA+K+L
Sbjct: 4   VPAEEDPEVHLGQLKR-FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL 62

Query: 400 KIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-- 456
           K    QG E +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++   L    
Sbjct: 63  KEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERP 122

Query: 457 EGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           E +P LDW  R +IA G+ARGLAYLH+ C
Sbjct: 123 ESQPPLDWPKRQRIALGSARGLAYLHDHC 151

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  268 bits (687), Expect = 1e-86
 Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 334 SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
           S   +   ++      +          +L +AT+ F  + L+G G FG VYKG L DG +
Sbjct: 6   SKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAK 65

Query: 394 VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFH 453
           VA+K+      QG  EF+ E+E +S   H HLVSL+G+C   +  +LIY Y+ N  L  H
Sbjct: 66  VALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRH 125

Query: 454 LHGEGRPV--LDWATRVKIAAGAARGLAYLHEDC 485
           L+G   P   + W  R++I  GAARGL YLH   
Sbjct: 126 LYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA 159

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  253 bits (648), Expect = 5e-81
 Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 12/140 (8%)

Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQLKIG----GGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L         + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73

Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWA 465
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L   L   +G P L W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133

Query: 466 TRVKIAAGAARGLAYLHEDC 485
            R KIA GAA G+ +LHE+ 
Sbjct: 134 MRCKIAQGAANGINFLHENH 153

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  152 bits (385), Expect = 3e-42
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 9/137 (6%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKA 412
           S      E L   +       +   G FG V+K        VA+K   I   Q   + + 
Sbjct: 10  SGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDKQSW-QNEY 67

Query: 413 EVEIISRIHHRHLVSLVGYCI----SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRV 468
           EV  +  + H +++  +G        D    LI  +    +L   L      V+ W    
Sbjct: 68  EVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK---ANVVSWNELC 124

Query: 469 KIAAGAARGLAYLHEDC 485
            IA   ARGLAYLHED 
Sbjct: 125 HIAETMARGLAYLHEDI 141

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  124 bits (314), Expect = 4e-32
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI 416
               E     D      L+G G +G+VYKG L D R VA+K          + F  E  I
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSF---ANRQNFINEKNI 58

Query: 417 --ISRIHHRHLVSLVGYCI-----SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
             +  + H ++   +              LL+ +Y PN +L  +L        DW +  +
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS---LHTSDWVSSCR 115

Query: 470 IAAGAARGLAYLHED 484
           +A    RGLAYLH +
Sbjct: 116 LAHSVTRGLAYLHTE 130

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  113 bits (284), Expect = 2e-28
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGE-------REFKAEVEIISRIHHR 423
           +  +G+GGFG V+KG  + D   VAIK L +G  +GE       +EF+ EV I+S ++H 
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHP 83

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           ++V L G     +   ++ ++VP   LY  L  +  P + W+ ++++    A G+ Y+ 
Sbjct: 84  NIVKLYGLMH--NPPRMVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLMLDIALGIEYMQ 139

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  112 bits (282), Expect = 3e-28
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
              L E   G ++KG    G ++ +K LK+     +  R+F  E   +    H +++ ++
Sbjct: 15  LTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 430 GYCIS--DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           G C S       LI  ++P  +LY  LH     V+D +  VK A   ARG+A+LH
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH 128

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  107 bits (270), Expect = 1e-26
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVG 430
           +G GGFG VY+ +   G EVA+K  +        Q     + E ++ + + H ++++L G
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKYLI 489
            C+ +    L+ ++     L   L G+    +     V  A   ARG+ YLH++    I
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEAIVPI 129

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  107 bits (270), Expect = 2e-26
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG+G FG   K  +   G  + +K+L     + +R F  EV+++  + H +++  +G   
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77

Query: 434 SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            D R   I +Y+   TL   +         W+ RV  A   A G+AYLH 
Sbjct: 78  KDKRLNFITEYIKGGTLRGIIKSMDSQ-YPWSQRVSFAKDIASGMAYLHS 126

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  107 bits (270), Expect = 2e-26
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+V++     G +VA+K L       +   EF  EV I+ R+ H ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLH 482
                  ++ +Y+   +LY  LH    R  LD   R+ +A   A+G+ YLH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH 154

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  105 bits (264), Expect = 1e-25
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V K      ++VAIKQ++       + F  E+  +SR++H ++V L G C+ 
Sbjct: 16  VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 71

Query: 435 DDRRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLH 482
            +   L+ +Y    +LY  LHG E  P    A  +      ++G+AYLH
Sbjct: 72  -NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLH 119

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  105 bits (263), Expect = 2e-25
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVG 430
            L+G+G FG VY G      EVAI+ + I     +  + FK EV    +  H ++V  +G
Sbjct: 39  ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            C+S     +I       TLY  +    + VLD     +IA    +G+ YLH
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLH 147

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  103 bits (260), Expect = 4e-25
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +  +  ++  +   ++LY HLH       +    + IA   ARG+ YLH
Sbjct: 90  -TAPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLH 137

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  103 bits (258), Expect = 8e-25
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLV 429
              +G+G +G V++G    G  VA+K       + E+ +  E E+     + H +++  +
Sbjct: 13  LECVGKGRYGEVWRGSW-QGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFI 68

Query: 430 GYCISDDRR----LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
              ++         LI  Y    +LY +L       LD  + ++I    A GLA+LH +
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHLHIE 124

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  106 bits (266), Expect = 2e-24
 Identities = 66/254 (25%), Positives = 88/254 (34%), Gaps = 20/254 (7%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            +             SP     +   ++                P          P    S
Sbjct: 1479 LVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVS 1538

Query: 61   NPPTSSSPPASSP--PTSSPPPASNPPTS------SPPPSP--PASSP------PTISPP 104
            +P  S + P  SP  P  SP   S  PTS      SP  SP  P+ SP      PT    
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598

Query: 105  PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
             P S   + + P  S T P  SP SP   P + S  P++P  + P  P  S   P  SP 
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPT 1657

Query: 165  SVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPA-SPIAPRPSNSSPNS 221
            S       P  S + P  SP +P   P S    P  P  +P +P+ SP +P  S  SP  
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717

Query: 222  PPPPSTKRLSPPPG 235
             P    ++ +    
Sbjct: 1718 SPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  102 bits (255), Expect = 4e-23
 Identities = 69/263 (26%), Positives = 100/263 (38%), Gaps = 12/263 (4%)

Query: 2    SAPSPGPPAANSSSPPP---PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP 58
            S  S    A           P+ +  +             +      S        P+ P
Sbjct: 1474 SNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSP 1533

Query: 59   ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP--PTISPPPPVSNPPTRSPP 116
                 +S     +SP  S   PA +P + S  P+ P+ SP  P+ SP  P  +P + S  
Sbjct: 1534 -GFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 117  PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
            P S +  P SP   P+ P  +   PS  P++    P S    P  + PS  P +P   P+
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPT 1650

Query: 177  SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPSNSSPN-SPPPPSTKRLSPP- 233
            S     + PA     PS  P  P+ +P +P+ SP +P  S +SPN SP  PS    SP  
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710

Query: 234  -PGIPVPSTENTPGNGTNPSSPE 255
             PG P  S +          +  
Sbjct: 1711 SPGSPAYSPKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 96.3 bits (239), Expect = 4e-21
 Identities = 60/241 (24%), Positives = 90/241 (37%), Gaps = 10/241 (4%)

Query: 31   PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
                P  +                 SP   +    +     +    +    +  P  +  
Sbjct: 1468 GGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYG 1527

Query: 91   PSPPASSPPTISPPP-PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
             +P +      SP   P S   + + P  S T P  SP SP   P + S  P++P  + P
Sbjct: 1528 EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-P 1586

Query: 150  PPPPSSVEPPKRSPPSVPPQNPPPPPSSSP--PKNSPPAPIAVPPSNVPPP--PTQTPPT 205
              P  S   P  SP S  P   P  PS SP  P  SP +P   P S    P  P+ +P +
Sbjct: 1587 TSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

Query: 206  PA-SPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPSNN 263
            P+ SP +P  S +SP   P   +   + P   P   + +      +P+SP  S +SPS +
Sbjct: 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1704

Query: 264  G 264
             
Sbjct: 1705 P 1705

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 94.0 bits (233), Expect = 2e-20
 Identities = 59/245 (24%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 28   PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
                     +     P  ++    +              SP   S    +          
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVK---DELMFSPLVDSGSNDAMAGGFTA--Y 1511

Query: 88   SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
                   A+SP       P S     S P  S T P  SP SP   P + S  P   PS 
Sbjct: 1512 GGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP-TSPSY 1570

Query: 148  LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPTQTPPT 205
             P  P  S   P  SP S       P  S + P  SP +P   P  PS  P  P+ +P +
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 206  PASPIAPRPSNSSPNSPP-PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPSNN 263
            P+    P   + SP SP   P++   SP      P++        +P+SP  S +SPS +
Sbjct: 1631 PSYS--PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-----SYSPTSPSYSPTSPSYS 1683

Query: 264  GIGTA 268
                +
Sbjct: 1684 PTSPS 1688

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 93.6 bits (232), Expect = 3e-20
 Identities = 63/228 (27%), Positives = 88/228 (38%), Gaps = 7/228 (3%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS--SPPPPPVSKPPTTSPPPSPP 58
                + G      ++ P         SP   VS+P  S  SP   P S   + + P   P
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP 1565

Query: 59   ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             S P  S + P+ SP + S  P S   + + P   P S   + + P      P+ SP  P
Sbjct: 1566 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1624

Query: 119  SSTPP-PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            S +P  P+  P+ PS  P +       PS  P  P  S   P  SP S       P  S 
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684

Query: 178  SPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAPRPSNSSPNSP 222
            + P  SP +P   P  PS  P  P  +P +PA SP      ++   + 
Sbjct: 1685 TSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 75.5 bits (185), Expect = 2e-14
 Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 55   PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
            P    +          +     S    ++          P     +             +
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA 1514

Query: 115  PPPPSSTPPPNSPPSPPSDPPANSPPPSNP--PSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                +++P      +P S     S P  +P  P+  P  P  S   P  SP S       
Sbjct: 1515 DYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTS 1574

Query: 173  PPPSSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPA--------SPIAPRPSNSSPNSP 222
            P  S + P  SP +P   P S    P  P+ +P +P+        SP +P  S +SP+  
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634

Query: 223  PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPS 261
            P   +   + P   P   + +      +P+SP  S +SPS
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 9/143 (6%)

Query: 122  PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            P               +P  +              +    SP      N       +   
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGL--VNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512

Query: 182  NSPPAPIAVPPSNVPPPPTQTPPTPASP-IAPRPSNSSPNSPPPPSTKRLSPPPGIPVPS 240
             +       P       PT      +SP  +P     SP SP        SP      P+
Sbjct: 1513 GADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAY------SPTSPSYSPT 1566

Query: 241  TENTPGNGTNPSSPESSSSPSNN 263
            + +      + S    S SP++ 
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSP 1589

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  101 bits (254), Expect = 5e-24
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 13/119 (10%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLV 429
              +G+G +G V+ G    G +VA+K         E  +  E EI     + H +++  +
Sbjct: 42  VKQIGKGRYGEVWMGKW-RGEKVAVKVFFT---TEEASWFRETEIYQTVLMRHENILGFI 97

Query: 430 GYCISDDRR----LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
              I          LI DY  N +LY +L       LD  + +K+A  +  GL +LH +
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHLHTE 153

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  101 bits (252), Expect = 1e-23
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 35/183 (19%)

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
           +  P  S  TT    I   +++   GSG G   +                    +V    
Sbjct: 5   LDRPFISEGTTLKDLIYDMTTS---GSGSGLPLLVQRTIA------------RTIVL--- 46

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHL 425
               Q  +G+G FG V++G    G EVA+K       + ER +  E EI     + H ++
Sbjct: 47  ----QESIGKGRFGEVWRGKW-RGEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI 98

Query: 426 VSLVGYCISDDRR----LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           +  +     D+       L+ DY  + +L+ +L+   R  +     +K+A   A GLA+L
Sbjct: 99  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHL 155

Query: 482 HED 484
           H +
Sbjct: 156 HME 158

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score =  102 bits (256), Expect = 3e-23
 Identities = 72/241 (29%), Positives = 99/241 (41%), Gaps = 22/241 (9%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP--P 58
                     A+       P    P  S   P      +SP   P S   +TSP   P  P
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGL--TSPSYSPSSPGYSTSPAYMPSSP 1576

Query: 59   ASNP------PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP--PTISPPPPVSNP 110
            + +P      PTS S   +SP  S   P+ +  + S  P+ P+ SP  P+ SP  P  +P
Sbjct: 1577 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636

Query: 111  PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS---NLPPPPPSSVEPPKRSPPSVP 167
             + S  P S +  P SP   P+ P  +   PS  P+     P  P  S   P  SP S  
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696

Query: 168  PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPSNSSPN-SPPPP 225
                 P  S + P  SP +P   P S     P+ +P +P+ SP +P  S +SP+ SP  P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

Query: 226  S 226
            S
Sbjct: 1752 S 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 98.2 bits (244), Expect = 1e-21
 Identities = 72/239 (30%), Positives = 92/239 (38%), Gaps = 13/239 (5%)

Query: 2    SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                               +  P      P    P SS   P       +  P SP  S 
Sbjct: 1508 LVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYST 1567

Query: 62   -PPTSSSPPASSP--PTSSPPPASNPPTSSPPPSPPASSPPTISP-PPPVSNPPTRSPPP 117
             P    S P+ SP  P+ SP   S  PTS P  SP + S    SP   P S   + + P 
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626

Query: 118  PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
             S T P  SP SP   P + S  P++P  + P  P  S   P  SP S       P  S 
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685

Query: 178  SPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAPRPSNSSPNSPP-PPSTKRLSP 232
            + P  SP +P   P  PS  P  P+ +P +P+ SP +P     SP SP   P++   SP
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSP 1741

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 97.5 bits (242), Expect = 2e-21
 Identities = 77/279 (27%), Positives = 104/279 (37%), Gaps = 24/279 (8%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            M        A       P V +    SP     +P                       AS
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR---EGFGDYGLLGAAS 1529

Query: 61   NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP-PTISPPPPVSNP--PTRSPPP 117
                  SP  +SP +S+  P     + S  PS P  S  P   P  P  +P  P+ SP  
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTS 1589

Query: 118  P--SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
            P  S T P  SP SP     + S  P++P  + P  P  S   P  SP S  P   P  P
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYS-PTSPSYSPTSPSYSPTS--PSYSPTSP 1646

Query: 176  SSSP--PKNSPPAPIAVPPSNVPPP--PTQTPPTPA--------SPIAPRPSNSSPNSPP 223
            S SP  P  SP +P   P S    P  P+ +P +P+        SP +P  S +SP+  P
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706

Query: 224  PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPS 261
               +   + P   P   + +      +P+SP  S +SPS
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1745

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 87.1 bits (215), Expect = 4e-18
 Identities = 54/234 (23%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 41   PPPPVSKPPTTSPPPSPPASNPPTSS--SPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
             P     P   SP         P ++  SP                   +  P     SP
Sbjct: 1478 LPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSP 1537

Query: 99   PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
               SP     +P        S +  P+SP    S     S P  +P S  P   P+S   
Sbjct: 1538 GYTSPFSSAMSP---GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTS--PSYSPTS--- 1589

Query: 159  PKRSPPSVPPQNPPPPPSSSPPKNSP--PAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPS 215
            P  SP S       P  S++ P  SP  P+     PS  P  P+ +P +P+ SP +P  S
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1649

Query: 216  NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAG 269
             +SP+  P   +   + P   P   + +      +P+SP  S +  +    +  
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 79.7 bits (196), Expect = 8e-16
 Identities = 55/233 (23%), Positives = 79/233 (33%), Gaps = 11/233 (4%)

Query: 38   SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            S     P            P  +  P   SP   S    SP  A+  P            
Sbjct: 1460 SLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGF 1519

Query: 98   PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA--NSPPPSNPPSNLPPPPPSS 155
                           +SP   S      SP    + P    +SP  S  P+ +P  P  S
Sbjct: 1520 GDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYS 1579

Query: 156  VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAP 212
               P  SP S       P  S + P  S  +P   P  PS  P  P+ +P +P+ SP +P
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639

Query: 213  RPSNSSPNSPPP-PSTKRLSPPPGIPVPSTENTPGNGT--NPSSPESSSSPSN 262
               + SP SP   P++   SP      P++ +        +P+SP  S +  +
Sbjct: 1640 ---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1689

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG V+ G L  D   VA+K  +       + +F  E  I+ +  H ++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                  ++ + V        L  EG   L   T +++   AA G+ YL  
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGAR-LRVKTLLQMVGDAAAGMEYLES 231

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 375 LGEGGFGSVYKGY---LPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV       L D     VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77

Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G C S  RR   LI +Y+P  +L  +L  + +  +D    ++  +   +G+ YL  
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGT 132

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 375 LGEGGFGSVYKGY---LPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV       L D     VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108

Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G C S  RR   LI +Y+P  +L  +L  + +  +D    ++  +   +G+ YL  
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGT 163

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 17/138 (12%)

Query: 363 VKATDGFAD------------QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREF 410
           V A D F                 +G+G FG V  G    G +VA+K +K       + F
Sbjct: 5   VAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAF 61

Query: 411 KAEVEIISRIHHRHLVSLVGYCISDDRRLLI-YDYVPNNTLYFHLHGEGRPVLDWATRVK 469
            AE  +++++ H +LV L+G  + +   L I  +Y+   +L  +L   GR VL     +K
Sbjct: 62  LAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLK 121

Query: 470 IAAGAARGLAYLHEDCKY 487
            +      + YL E   +
Sbjct: 122 FSLDVCEAMEYL-EGNNF 138

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 375 LGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90

Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G      R+   L+ +Y+P+  L   L    R  LD +  +  ++   +G+ YL  
Sbjct: 91  GVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYLGS 145

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 375 LGEGGFGSVYKGYL--------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           LG+G F  ++KG              EV +K L          F     ++S++ H+HLV
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK 486
              G C+  D  +L+ ++V   +L  +L  + +  ++   ++++A   A  + +L E+  
Sbjct: 76  LNYGVCVCGDENILVQEFVKFGSLDTYLK-KNKNCINILWKLEVAKQLAAAMHFL-EENT 133

Query: 487 Y 487
            
Sbjct: 134 L 134

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 85.3 bits (212), Expect = 8e-19
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VA+K +K  G   E EF  E + + ++ H  LV   G C  
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           +    ++ +Y+ N  L  +L   G+  L+ +  +++      G+A+L E  ++
Sbjct: 75  EYPIYIVTEYISNGCLLNYLRSHGKG-LEPSQLLEMCYDVCEGMAFL-ESHQF 125

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 88.4 bits (219), Expect = 9e-19
 Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 266 GTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKT 325
           G    + +      IA ++  L+    R                      S    +  + 
Sbjct: 292 GAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRPQKEGERALPSIPKLANNEK 351

Query: 326 QSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNL-----LGEGGF 380
           Q       S   +D      D           TY            + +     +GEG F
Sbjct: 352 QGVRSHTVSVSETDDYAEIIDEED--------TYTMPSTRDYEIQRERIELGRCIGEGQF 403

Query: 381 GSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYCISD 435
           G V++G    P+     VAIK  K       R +F  E   + +  H H+V L+G   ++
Sbjct: 404 GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TE 462

Query: 436 DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           +   +I +      L   L    +  LD A+ +  A   +  LAYL E  ++
Sbjct: 463 NPVWIIMELCTLGELRSFLQ-VRKFSLDLASLILYAYQLSTALAYL-ESKRF 512

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
                L+ +++ +  L  +L    R +    T + +      G+AYL E+   
Sbjct: 75  QAPICLVTEFMEHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYL-EEACV 125

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
             ++G G FG VY G L   DG++   A+K L      GE  +F  E  I+    H +++
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89

Query: 427 SLVGYCI-SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           SL+G C+ S+   L++  Y+ +  L   +  E          +      A+G+ YL  
Sbjct: 90  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLAS 146

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
              +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G 
Sbjct: 198 LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 254

Query: 432 CISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            + +   L ++ +Y+   +L  +L   GR VL     +K +      + YL E   +
Sbjct: 255 IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL-EGNNF 310

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 375 LGEGGFGSVYKGYLP-----DGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG V            G +VA+K LK   G     + K E+EI+  ++H ++V  
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            G C  D      LI +++P+ +L  +L    +  ++   ++K A    +G+ YL  
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLGS 144

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 83.0 bits (206), Expect = 6e-18
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
                +I +Y+ N  L  +L  E R        +++       + YL E  ++
Sbjct: 91  QRPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYL-ESKQF 141

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 83.1 bits (206), Expect = 7e-18
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 375 LGEGGFGSVYKGYLPDGR-EVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G +G VY+G        VA+K LK    + E EF  E  ++  I H +LV L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGVCT 79

Query: 434 SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            +    +I +++    L  +L    R  +     + +A   +  + YL E   +
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYL-EKKNF 132

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK G    +  F AE  ++ ++ H+ LV L     +
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAVV-T 78

Query: 435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            +   +I +Y+ N +L   L       L     + +AA  A G+A++ E+  Y
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI-EERNY 130

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           LGEG FG VY+G      G +  VA+K  K       + +F +E  I+  + H H+V L+
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           G    ++   +I +  P   L  +L    +  L   T V  +    + +AYL E    
Sbjct: 80  GII-EEEPTWIIMELYPYGELGHYLE-RNKNSLKVLTLVLYSLQICKAMAYL-ESINC 134

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           +GEG FG V++G    P+     VAIK  K       R +F  E   + +  H H+V L+
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           G   +++   +I +      L   L    +  LD A+ +  A   +  LAYL E  ++
Sbjct: 83  GVI-TENPVWIIMELCTLGELRSFLQ-VRKYSLDLASLILYAYQLSTALAYL-ESKRF 137

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 85.3 bits (210), Expect = 1e-17
 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 6/168 (3%)

Query: 19  PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSP 78
           P +         P+  P +  PP  P +   +      PP    P+       +P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
               +  T+S       + P      P     P     P     P      P + P    
Sbjct: 70  HQQIDQATTSMNDMHLHNVPL---VDPNAYMQP---QVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
           P  +   +  P      ++     PP +     PPPP   PP+     
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 82.2 bits (202), Expect = 1e-16
 Identities = 31/190 (16%), Positives = 47/190 (24%), Gaps = 6/190 (3%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           +       P        ++ P   PA   P   P     +      PP  + P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
                           +++      +V              P  P     P      P+A
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLV----DPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGT 249
            P    P         P +     P +     PPP +   L PPP +  P     P   +
Sbjct: 118 APAYGQPSAAMGQNMRPMNQ--LYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

Query: 250 NPSSPESSSS 259
           N S     S+
Sbjct: 176 NASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 81.0 bits (199), Expect = 2e-16
 Identities = 23/185 (12%), Positives = 35/185 (18%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           S         +             P +  PP        S       P    P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
             P       +  + +           P         P  P+ +             P  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG 266
             P A    N  P +   P       PP I   +    P           S   + +   
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 267 TAGTV 271
              T+
Sbjct: 182 IRSTL 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 80.6 bits (198), Expect = 3e-16
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 4/196 (2%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
                      P+  P    PP     P  +      +  PP  + P          +  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQD---PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
                   ++         + P   P A   P +           + P    +   P++ 
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
                 P  N   P +  + LPPP      PP            P   S++ P       
Sbjct: 128 MGQNMRPM-NQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 188 IAVPPSNVPPPPTQTP 203
            AVP ++     ++ P
Sbjct: 187 NAVPKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 78.7 bits (193), Expect = 2e-15
 Identities = 26/188 (13%), Positives = 48/188 (25%), Gaps = 5/188 (2%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P +      +      P    PP   P  +          P      P +      +P  
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQD-PAAAGMSYGQMGMPPQ--GAVPSMGQQQFLTPAQ 66

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP--KRSPPSVPPQNPPPPP 175
                  +   +  +D   ++ P  +P + + P  P  +  P  ++  P   P    P  
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           +             +      PPP      P  P+   P      S    ++        
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 236 IPVPSTEN 243
             VP   +
Sbjct: 187 NAVPKNSS 194

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 72.9 bits (178), Expect = 9e-14
 Identities = 32/210 (15%), Positives = 46/210 (21%), Gaps = 5/210 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS- 60
           +A     PA       P  +         P      S      ++            A+ 
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 61  --NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             N     + P   P     P       +         + P    P        R     
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS--VPPQNPPPPPS 176
                    P P +D     PP   PP  +  P   S   P     +    P+N      
Sbjct: 139 YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKK 198

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           S  P      P      ++ PPP       
Sbjct: 199 SKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 13/135 (9%), Positives = 24/135 (17%), Gaps = 8/135 (5%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
           S                +  P ++    +PPQ+P     S      PP            
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQG--------AV 53

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           P                      +         + P   P    +            +  
Sbjct: 54  PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 258 SSPSNNGIGTAGTVV 272
              +    G     +
Sbjct: 114 QPMAAPAYGQPSAAM 128

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG G FG V+        +VA+K +K  G      F AE  ++  + H  LV L   
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKLHAV 251

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
             + +   +I +++   +L   L  +          +  +A  A G+A++ E   Y
Sbjct: 252 V-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFI-EQRNY 305

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 375 LGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG ++P+G +    VAIK+L+         E   E  +++ + + H+  L
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           +G C       LI   +P   L  ++  E +  +     +      A+G+ YL ED + 
Sbjct: 83  LGIC-LTSTVQLITQLMPFGCLLDYVR-EHKDNIGSQYLLNWCVQIAKGMNYL-EDRRL 138

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             S++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+  
Sbjct: 248 V-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 298

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 372 QNLLGEGGFGSVYKGYLPDGRE----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
             ++G+G FG VY G   D  +     AIK L       +   F  E  ++  ++H +++
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85

Query: 427 SLVGYCISDD-RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +L+G  +  +    ++  Y+ +  L   +    +        +      ARG+ YL  + 
Sbjct: 86  ALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYL-AEQ 143

Query: 486 KY 487
           K+
Sbjct: 144 KF 145

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 375 LGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           LG G FGSV +G     ++   VAIK LK G  + +  E   E +I+ ++ + ++V L+G
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            C   +  +L+ +      L+  L G+    +  +   ++    + G+ YL E+  +
Sbjct: 78  VC-QAEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQVSMGMKYL-EEKNF 131

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 375 LGEGGFGSVYKGYL---PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG V         DG    VA+K LK   G   R  +K E++I+  ++H H++  
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            G C         L+ +YVP  +L  +L    R  +  A  +  A     G+AYLH 
Sbjct: 99  KGCCEDAGAASLQLVMEYVPLGSLRDYLP---RHSIGLAQLLLFAQQICEGMAYLHA 152

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 292 LRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLG 351
           + R    + G+  +  + + L   + +++ Y +  ++  +  S    + V + Q    +G
Sbjct: 27  VPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQHVV-IG 85

Query: 352 HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGE 407
            S  +  + E+            +G G FG VY G L   DG++   A+K L      GE
Sbjct: 86  PSSLIVHFNEV------------IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE 133

Query: 408 R-EFKAEVEIISRIHHRHLVSLVGYCI-SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWA 465
             +F  E  I+    H +++SL+G C+ S+   L++  Y+ +  L   +  E        
Sbjct: 134 VSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVK 192

Query: 466 TRVKIAAGAARGLAYLHE 483
             +      A+G+ +L  
Sbjct: 193 DLIGFGLQVAKGMKFLAS 210

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           +G G  G V  G L  P  R+  VAIK LK G  + +R +F +E  I+ +  H +++ L 
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           G        +++ +Y+ N +L   L             V +  G   G+ YL  D  Y
Sbjct: 117 GVVTRGRLAMIVTEYMENGSLDTFLR-THDGQFTIMQLVGMLRGVGAGMRYL-SDLGY 172

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+     +         VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 429 VGYCISDDRRLLIYDYV-------------PNNTLYFHLHGEGRPVLDWATRVKIAAGAA 475
            G C      L++++Y+             P+  L           L     + +A+  A
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 168

Query: 476 RGLAYLHE 483
            G+ YL  
Sbjct: 169 AGMVYLAG 176

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           +G G FG V  G L  P  +E  VAIK LK+G  + +R +F  E  I+ +  H +++ L 
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE 112

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           G        +++ +Y+ N +L   L  +          V +  G A G+ YL  D  Y
Sbjct: 113 GVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQLVGMLRGIASGMKYL-SDMGY 168

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGR----EVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
             +LG G FG+V+KG ++P+G      V IK ++   G+         +  I  + H H+
Sbjct: 18  LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHI 77

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           V L+G C       L+  Y+P  +L  H+  + R  L     +      A+G+ YL E
Sbjct: 78  VRLLGLC-PGSSLQLVTQYLPLGSLLDHVR-QHRGALGPQLLLNWGVQIAKGMYYLEE 133

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V +G    P G+   VA+K LK       +   +F  EV  +  + HR+L+ 
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           L G         ++ +  P  +L   L  + +      T  + A   A G+ YL E  ++
Sbjct: 86  LYGVV-LTPPMKMVTELAPLGSLLDRLR-KHQGHFLLGTLSRYAVQVAEGMGYL-ESKRF 142

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 31/216 (14%)

Query: 288 VVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDP 347
                     ++     +Y   +      + +    K ++S  +    P   F       
Sbjct: 3   YYHHHHHHDYDIPTTENLYFQGAMGSELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSI 62

Query: 348 GGLGH-SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGR------EVAIKQLK 400
             L    R   T                LG G FG VY+G +          +VA+K L 
Sbjct: 63  SDLKEVPRKNITLIRG------------LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP 110

Query: 401 IGGGQGER-EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL----- 454
               + +  +F  E  IIS+ +H+++V  +G  +    R ++ + +    L   L     
Sbjct: 111 EVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRP 170

Query: 455 HGEGRPVLDWATRVKIAAGAARGLAYL------HED 484
                  L     + +A   A G  YL      H D
Sbjct: 171 RPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRD 206

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 79.8 bits (197), Expect = 4e-16
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           ++ LG G +G VY+G +      VA+K LK    + E EF  E  ++  I H +LV L+G
Sbjct: 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLG 283

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            C  +    +I +++    L  +L    R  +     + +A   +  + YL +
Sbjct: 284 VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK 336

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+     +         VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 429 VGYCISDDRRLLIYDYVPN--------------NTLYFHLHGEGRPVLDWATRVKIAAGA 474
            G C   D  +++++Y+ +                L      + +  L  +  + IA+  
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 142

Query: 475 ARGLAYLHEDCKY 487
           A G+ YL     +
Sbjct: 143 ASGMVYL-ASQHF 154

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY+G      +      VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL--------HGEGRPVLDWATRVKIAAGAARGLA 479
           L+G        L+I + +    L  +L        +         +  +++A   A G+A
Sbjct: 93  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA 152

Query: 480 YLHE 483
           YL+ 
Sbjct: 153 YLNA 156

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 375 LGEGGFGSVYKGYLPDGR------EVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +          +VA+K L     + +  +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL-----HGEGRPVLDWATRVKIAAGAARGLAYL- 481
            +G  +    R ++ + +    L   L            L     + +A   A G  YL 
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157

Query: 482 -----HED 484
                H D
Sbjct: 158 ENHFIHRD 165

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 375 LGEGGFGSVYKGYLPDGRE----VAIKQLKIGG-GQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FGSV +G L         VA+K +K+    Q E  EF +E   +    H +++ L
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101

Query: 429 VGYCISDD-----RRLLIYDYVPN----NTLYFHLHGEGRPVLDWATRVKIAAGAARGLA 479
           +G CI        + ++I  ++        L +     G   +   T +K     A G+ 
Sbjct: 102 LGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME 161

Query: 480 YL 481
           YL
Sbjct: 162 YL 163

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 375 LGEGGFGSVYKGYL--PDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           +G G FG VYKG L    G++   VAIK LK G  + +R +F  E  I+ +  H +++ L
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            G        ++I +Y+ N  L   L  E          V +  G A G+ YL  +  Y
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFLR-EKDGEFSVLQLVGMLRGIAAGMKYL-ANMNY 168

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 375 LGEGGFGSVYKGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG      E     VAIK+L+         E   E  +++ + + H+  L
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G C       LI   +P   L  ++  E +  +     +      A+G+ YL +
Sbjct: 83  LGIC-LTSTVQLITQLMPFGCLLDYVR-EHKDNIGSQYLLNWCVQIAKGMNYLED 135

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 21/128 (16%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L           VAIK LK       R EF+ E  + +R+ H ++V 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 428 LVGYCISDDRRLLIYDYVPN--------------NTLYFHLHGEGRPVLDWATRVKIAAG 473
           L+G    D    +I+ Y  +              +          +  L+    V + A 
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQ 136

Query: 474 AARGLAYL 481
            A G+ YL
Sbjct: 137 IAAGMEYL 144

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 372 QNLLGEGGFGSVYKGYLPDGRE----VAIKQLKIGGGQGER--EFKAEVEIISRIHHRHL 425
             +LG+G FGSV +  L         VA+K LK          EF  E   +    H H+
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV 87

Query: 426 VSLVGYCISDDRR------LLIYDYVPNNTLYFHL----HGEGRPVLDWATRVKIAAGAA 475
             LVG  +    +      ++I  ++ +  L+  L     GE    L   T V+     A
Sbjct: 88  AKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIA 147

Query: 476 RGLAYL 481
            G+ YL
Sbjct: 148 CGMEYL 153

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 375 LGEGGFGSVYKGYLPDGR---EVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG G FG+V KGY    +    VA+K LK        + E  AE  ++ ++ + ++V ++
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
           G C   +  +L+ +      L  +L       +     +++    + G+ YL E+  +
Sbjct: 85  GIC-EAESWMLVMEMAELGPLNKYLQQNRH--VKDKNIIELVHQVSMGMKYL-EESNF 138

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 77.7 bits (190), Expect = 3e-15
 Identities = 21/215 (9%), Positives = 39/215 (18%), Gaps = 3/215 (1%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
              ++ P    +N   +S     S            ++                 ++SP 
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT--ASETASPA 78

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           ++   T+    A++        S   +  P+    P         P   +          
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPI 188
                    P           P        +      P        +  S    S     
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 189 AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            V          Q      S      S        
Sbjct: 199 LVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKA 233

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 73.5 bits (179), Expect = 7e-14
 Identities = 17/194 (8%), Positives = 41/194 (21%), Gaps = 3/194 (1%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                    +  S                  N  + +      S+  + +   +      
Sbjct: 29  NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATT--- 85

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
            T+ +  A+ P   +    +  P++   P     +                +    +   
Sbjct: 86  ETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKE 145

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                P              N    L    P + E    +  SV   +       +   +
Sbjct: 146 VQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKAS 205

Query: 183 SPPAPIAVPPSNVP 196
                 A+  +N  
Sbjct: 206 KEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 71.5 bits (174), Expect = 3e-13
 Identities = 21/213 (9%), Positives = 44/213 (20%), Gaps = 10/213 (4%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
            P++S     +     +    +          +             AS   + +   +  
Sbjct: 26  VPENSGANTELVSGE-SEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
             +    S   P           PS+   P S     + P A +                
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ---------GDESKP 135

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           + E  K      P        +  P +    +   +                +  +A R 
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRR 195

Query: 215 SNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGN 247
           +    N       K  +            + G 
Sbjct: 196 TGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 68.5 bits (166), Expect = 2e-12
 Identities = 17/208 (8%), Positives = 46/208 (22%), Gaps = 2/208 (0%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             +     +       T+ P  +          S  +++          +          
Sbjct: 8   HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-- 176
            +T    + P+        +   ++             E P         +     P   
Sbjct: 68  VATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT 127

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +   ++ P A        V P   +       P   + ++        P  +        
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSNNG 264
            V       G+  N  + + +   + + 
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 66.5 bits (161), Expect = 1e-11
 Identities = 22/206 (10%), Positives = 44/206 (21%), Gaps = 2/206 (0%)

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
              +  P +S          S    +     +       +           S   + +  
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
             ++T       S        S   +  PS    P        K    +   ++ P   +
Sbjct: 81  EAATTETAE-AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +   K   P            P      +    +   P     ++    S    S   G 
Sbjct: 140 NKTEKEVQPDV-PKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSN 262
            V    +        S+  S +    
Sbjct: 199 LVNEKASKEAKVQALSNTNSKAKDHA 224

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 59.6 bits (143), Expect = 1e-09
 Identities = 17/172 (9%), Positives = 32/172 (18%), Gaps = 3/172 (1%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
              P ++          S    N          A                 S    P  +
Sbjct: 24  TAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE---GVATASETASPASN 80

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
             +          +    K S            P    +T   P +      S  +  + 
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIA 274
                 +   P               +     +       +     G+VV+A
Sbjct: 141 KTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%)

Query: 372 QNLLGEGGFGSVYKGYL-PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG     AIK++K    + +  +F  E+E++ ++ HH +++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL--------------YFHLHGEGRPVLDWATRVKIAA 472
           +L+G C       L  +Y P+  L               F +       L     +  AA
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149

Query: 473 GAARGLAYL 481
             ARG+ YL
Sbjct: 150 DVARGMDYL 158

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 373 NLLGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSL 428
             LG+G FG+VY          +A+K L   ++     E + + EVEI S + H +++ L
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 74

Query: 429 VGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            GY   D  R+ LI +Y P  T+Y  L    +   D           A  L+Y H 
Sbjct: 75  YGY-FHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCHS 127

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 76.9 bits (189), Expect = 4e-15
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 375 LGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           LG G FGSV +G     ++   VAIK LK G  + +  E   E +I+ ++ + ++V L+G
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
            C   +  +L+ +      L+  L G+    +  +   ++    + G+ YL E+  +
Sbjct: 404 VC-QAEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQVSMGMKYL-EEKNF 457

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 29/136 (21%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           +GEG FG V++   P          VA+K LK       + +F+ E  +++   + ++V 
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114

Query: 428 LVGYCISDDRRLLIYDYVPN----------------------NTLYFHLHGEGRPVLDWA 465
           L+G C       L+++Y+                         +    +   G P L  A
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 174

Query: 466 TRVKIAAGAARGLAYL 481
            ++ IA   A G+AYL
Sbjct: 175 EQLCIARQVAAGMAYL 190

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LGEGGF  V     L DG   A+K++     Q   E + E ++    +H +++ LV YC
Sbjct: 36  KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95

Query: 433 ISDDRR----LLIYDYVPNNTLYFHL--HGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           + +        L+  +    TL+  +    +    L     + +  G  RGL  +H 
Sbjct: 96  LRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA 152

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LLG+G F  VY+   +  G EVAIK +    +      +  + EV+I  ++ H  ++ L 
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELY 77

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            Y   D   + L+ +   N  +  +L    +P  +   R         G+ YLH 
Sbjct: 78  NY-FEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEAR-HFMHQIITGMLYLHS 130

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 330

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             S++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+  
Sbjct: 331 V-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 381

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPA 70
           +N S P        ++ P   V      + P        T S P S      P+++  PA
Sbjct: 2   SNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQ-----TPSKPASADGHRGPSAAFAPA 56

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           ++ P       S+   +SP  + P +   T 
Sbjct: 57  AAEPKLFGGFNSSDTVTSPQRAGPLAGGVTT 87

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 14/80 (17%), Positives = 22/80 (27%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
            P  ++    S  PA +   +         T S P S      P+ +  P  + P     
Sbjct: 6   KPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGG 65

Query: 116 PPPSSTPPPNSPPSPPSDPP 135
              S T        P +   
Sbjct: 66  FNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 6/89 (6%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           KS P         +       PA N   +      +  T S P +++          PA+
Sbjct: 4   KSKPKD------ASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAA 57

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           + P +      S+  T             
Sbjct: 58  AEPKLFGGFNSSDTVTSPQRAGPLAGGVT 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 1/83 (1%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPS 154
            S P  +     S  P  +         P S  PS P+    +  P +        P   
Sbjct: 4   KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLF 63

Query: 155 SVEPPKRSPPSVPPQNPPPPPSS 177
                  +  S     P     +
Sbjct: 64  GGFNSSDTVTSPQRAGPLAGGVT 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 7/88 (7%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           S P   S   +S  P   V      + P S   S P ++            P  A  P  
Sbjct: 5   SKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHR-------GPSAAFAPAA 57

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRS 114
           + P      +S  T++ P          
Sbjct: 58  AEPKLFGGFNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 3/82 (3%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSS---PPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             S P  +S    S  PA N   +     P S   S P +       S     +   P  
Sbjct: 3   NKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKL 62

Query: 121 TPPPNSPPSPPSDPPANSPPPS 142
               NS  +  S   A      
Sbjct: 63  FGGFNSSDTVTSPQRAGPLAGG 84

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 23/87 (26%), Gaps = 4/87 (4%)

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
            S P   S    +  P  N         P+S  P K   P+    +  P  + +P    P
Sbjct: 4   KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSK---PASADGHRGPSAAFAPAAAEP 60

Query: 185 PAPIAVPPS-NVPPPPTQTPPTPASPI 210
                   S  V  P    P       
Sbjct: 61  KLFGGFNSSDTVTSPQRAGPLAGGVTT 87

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 29/136 (21%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LGEG FG V K      +       VA+K LK      E  +  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90

Query: 428 LVGYCISDDRRLLIYDYVPN----------------------NTLYFHLHGEGRPVLDWA 465
           L G C  D   LLI +Y                         +     L       L   
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMG 150

Query: 466 TRVKIAAGAARGLAYL 481
             +  A   ++G+ YL
Sbjct: 151 DLISFAWQISQGMQYL 166

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 373 NLLGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
             LG G FG V +       +      VA+K LK      E+    +E++I+S +  H +
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL------------YFHLHGEGRPVLDWATRVKIAA 472
           +V+L+G C      L+I +Y     L                             +  ++
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSS 171

Query: 473 GAARGLAYL 481
             A+G+A+L
Sbjct: 172 QVAQGMAFL 180

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 25/137 (18%)

Query: 375 LGEGGFGSVYKGYLPDGRE--------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V         +        VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL--------------YFHLHGEGRPVLDWATRVKI 470
           +++L+G C  D    +I +Y     L               + ++      + +   V  
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162

Query: 471 AAGAARGLAYLHEDCKY 487
               ARG+ YL    K 
Sbjct: 163 TYQLARGMEYL-ASQKC 178

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 24/131 (18%)

Query: 375 LGEGGFGSVYKGYLPDGRE--------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V         +        VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL--------------YFHLHGEGRPVLDWATRVKI 470
           +++L+G C  D    +I +Y     L               + ++      + +   V  
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 208

Query: 471 AAGAARGLAYL 481
               ARG+ YL
Sbjct: 209 TYQLARGMEYL 219

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 25/137 (18%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +       +      VA+K LK      ER    +E++++S + +H ++V
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90

Query: 427 SLVGYCISDDRRLLIYDYVPN----------------NTLYFHLHGEGRPVLDWATRVKI 470
           +L+G C      L+I +Y                   +     +  +    LD    +  
Sbjct: 91  NLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150

Query: 471 AAGAARGLAYLHEDCKY 487
           +   A+G+A+L      
Sbjct: 151 SYQVAKGMAFL-ASKNC 166

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVG 430
            +G G F +VYKG       EVA  +L+         + FK E E++  + H ++V    
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 431 YCIS---DDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK 486
              S     + +++  + + + TL  +L       +             +GL +LH    
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKV--MKIKVLRSWCRQILKGLQFLHTRTP 150

Query: 487 YLI 489
            +I
Sbjct: 151 PII 153

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 24/131 (18%)

Query: 375 LGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V                 +VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL--------------YFHLHGEGRPVLDWATRVKI 470
           +++L+G C  D    +I +Y     L               ++        L     V  
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 196

Query: 471 AAGAARGLAYL 481
           A   ARG+ YL
Sbjct: 197 AYQVARGMEYL 207

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 29/136 (21%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V         +      VA+K LK      ER    +E+++++++  H ++V
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112

Query: 427 SLVGYCISDDRRLLIYDYVPN---------------------NTLYFHLHGEGRPVLDWA 465
           +L+G C       LI++Y                                 E   VL + 
Sbjct: 113 NLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172

Query: 466 TRVKIAAGAARGLAYL 481
             +  A   A+G+ +L
Sbjct: 173 DLLCFAYQVAKGMEFL 188

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG+G +G VY G  L +   +AIK++     +  +    E+ +   + H+++V  +G  
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-S 87

Query: 433 ISDDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVK-IAAGAARGLAYLHE 483
            S++  + I+ + VP  +L   L  +  P+ D    +         GL YLH+
Sbjct: 88  FSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 140

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 23/130 (17%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +            R VA+K LK G    E     +E++I+  I HH ++V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94

Query: 427 SLVGYCISDDR-RLLIYDYVPNNTL--------------YFHLHGEGRPVLDWATRVKIA 471
           +L+G C       ++I ++     L                      +  L     +  +
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154

Query: 472 AGAARGLAYL 481
              A+G+ +L
Sbjct: 155 FQVAKGMEFL 164

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 69.8 bits (170), Expect = 6e-13
 Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 15  SPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
           S      +   + P       P +S             PP + P   PP   +P A +PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS---TPPPNSPPSPP 131
            +    +        P  P  +S            P   +  PP++    P     P P 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 132 SDPP 135
            DP 
Sbjct: 123 PDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 67.1 bits (163), Expect = 4e-12
 Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 3/130 (2%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           SS          +   P       P  S +  AS    +  PP + P  + PPP  PA+ 
Sbjct: 3   SSHHHHH---HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
            P  +             P    T            P   +P  + P +    P      
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 158 PPKRSPPSVP 167
            P+  P  V 
Sbjct: 120 VPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 26/140 (18%), Positives = 36/140 (25%), Gaps = 11/140 (7%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS-NPPTSSPPPSPPASSPPTISP 103
           +          S           P AS    +S   A+ +PP + P P+PP    P    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           PP              S          P+ P   S  P+      P P   +  PP    
Sbjct: 61  PPD--------TVTGDSVLQR--ILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

Query: 164 PSVPPQNPPPPPSSSPPKNS 183
                 + P P         
Sbjct: 111 AVPGLYHHPVPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 1/122 (0%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
            +   SS   P  S     S   +  AS+   +  PP + P  + PPP +    + P   
Sbjct: 6   HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65

Query: 93  PPASSPPTISPPPPVSNPPTRSP-PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
              S    I   P      + +P       P P +P S P       P   + P   P P
Sbjct: 66  TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

Query: 152 PP 153
             
Sbjct: 126 VR 127

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 5/131 (3%)

Query: 80  PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP--SDPPAN 137
              +  +S   P       P+ S     S+      PP +   P   PP  P   +PP  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 138 SPPPSNPPSNLPPP---PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
               S     L  P     +S+ P  R      P+ P   P ++           VP  +
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 195 VPPPPTQTPPT 205
                  +   
Sbjct: 125 PVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.2 bits (145), Expect = 6e-10
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 6/137 (4%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           S+          V +         P AS    +S   A+  P  + P  + PP  +P   
Sbjct: 3   SSHHHHHHSSGLVPRGS---HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 93  PPASSPPTISPPPPVSNPPTR---SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
            P  +    S    +   PT    +   P+        P  P+  P  +        + P
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 150 PPPPSSVEPPKRSPPSV 166
            P P  V   + S    
Sbjct: 120 VPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 8e-10
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 7/129 (5%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           SS       +   P  S+    S   +  AS       PP     P    PPP   P   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP---APPPPPAPAAG 59

Query: 126 SPPSPPSDPPANSPPPSNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS-SPPKNS 183
           +P  P +    +        P+       +      R P    P + PP      P    
Sbjct: 60  NP--PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117

Query: 184 PPAPIAVPP 192
            P P   P 
Sbjct: 118 HPVPEPDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP--PNSPPSPPSDPPANSPPPS 142
                  S        +  P                 P   P+  P PP  P A +PP +
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
               ++          P  +  +   +    P   +P    P A  AVP     P P   
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 203 PPTP 206
           P   
Sbjct: 125 PVRV 128

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 22/127 (17%), Positives = 30/127 (23%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           SS         +    +    P +S     S       PP   P P+ PP   P      
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
                 S      + P  P ++S            P +    PP      P     P P 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 216 NSSPNSP 222
                  
Sbjct: 123 PDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                S   P  S    PS   + +   S+  + L PP       P   P       P  
Sbjct: 7   HHHHSSGLVPRGSHMVIPS--ASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
               S  +     P     +            PA     +P   +P S PP + + +   
Sbjct: 65  VTGDSVLQRILRGPTGPGTT---------SLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

Query: 234 PGIPVPSTENTPGNGTNPSS 253
              PVP  +       +   
Sbjct: 116 YHHPVPEPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 24/123 (19%), Positives = 29/123 (23%), Gaps = 2/123 (1%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           S      +     P       P  S  S  SD  A   PP   P   P PPP        
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPD--PAPPPPPAPAAGN 60

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            P +V   +        P      +          P P      P +     P       
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 222 PPP 224
           P P
Sbjct: 121 PEP 123

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 20/112 (17%), Positives = 27/112 (24%), Gaps = 2/112 (1%)

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP--PPPTQTPPTPAS 208
              SS   P+ S   +P  +     S       PP  +  P    P  P     P T   
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
               +     P  P   S          P P    +       + P     P
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 8/112 (7%)

Query: 137 NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ---NPPPPPSSSPPKNSPPAPIAVPPS 193
           +S    +  S L P     V P      +         PP     P    PPAP A  P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 194 NVPPPPTQTPPTPASPI-----APRPSNSSPNSPPPPSTKRLSPPPGIPVPS 240
           +     +        P      +  P+      P P +     P  G  VP 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 165 SVPPQNPPP-PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           S    +               P+      ++        P T   P  P P   +  +PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 224 PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              T        +  P+   T                +
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEA 100

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 161 RSPPSVP-PQNPPPP-PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
            S           P       P  S  +  +   + + PP T   P P  P AP   N  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
                    +R+   P  P  ++            PE+ +S 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+G FG+VY      +   +A+K L   ++     E + + E+EI S + H +++ + 
Sbjct: 21  PLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMY 80

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            Y   D +R+ L+ ++ P   LY  L   GR   D           A  L Y HE
Sbjct: 81  NY-FHDRKRIYLMLEFAPRGELYKELQKHGR--FDEQRSATFMEELADALHYCHE 132

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 354 RSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FK 411
           R +  +E +            LG GGFG V++     D    AIK++++   +  RE   
Sbjct: 2   RYLTDFEPI----------QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVM 51

Query: 412 AEVEIISRIHHRHLVSLVGYCISDD---------RRLLIY---DYVPNNTLYFHLHG-EG 458
            EV+ ++++ H  +V      +  +          ++ +Y          L   ++G   
Sbjct: 52  REVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCT 111

Query: 459 RPVLDWATRVKIAAGAARGLAYLHE 483
               + +  + I    A  + +LH 
Sbjct: 112 IEERERSVCLHIFLQIAEAVEFLHS 136

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 18/152 (11%)

Query: 347 PGGLGHSRSMFTYE---ELVKATDGFADQNLLGEGGFGSVYKGY------LPDGREVAIK 397
           P        +   +   E    +      +LLGEG F  VY+          + ++  +K
Sbjct: 42  PNTFEWQCKLPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLK 101

Query: 398 QLKIGGGQGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL 454
             K        EF    +++ R+        +      +  +  +L+ +     TL   +
Sbjct: 102 VQKP---ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAI 158

Query: 455 HGEGRP---VLDWATRVKIAAGAARGLAYLHE 483
           +        V+     +  A      +  +H+
Sbjct: 159 NLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD 190

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA---EVEIISRIHH 422
             F  +  +G G F  VY+   L DG  VA+K+++I      +       E++++ +++H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 423 RHLVSLVGYCISDDRRLLIY-DYVPNNTLYFHLHGEGRP--------VLDWATRVKIAAG 473
            +++      I D+  L I  +      L   +    +         V  +  ++     
Sbjct: 92  PNVIKYYASFIEDN-ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL----- 145

Query: 474 AARGLAYLHE 483
               L ++H 
Sbjct: 146 -CSALEHMHS 154

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 67.0 bits (163), Expect = 5e-12
 Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 2/137 (1%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
                     +    S+   SS  + +   +   P+  P   P   SP  +  P    + 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 111 PTR--SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
           P     PP    + P           P       +P  + P  P SS E  K        
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 169 QNPPPPPSSSPPKNSPP 185
              P  PS +    +  
Sbjct: 122 LKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 27/137 (19%), Positives = 39/137 (28%), Gaps = 3/137 (2%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
                 +    S         PT     + P+ +P       +     S     S+P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             PP    SSP     P  +S P T +    + +P  +SP +P S      PP       
Sbjct: 66  MGPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 148 LPPPPPSSVEPPKRSPP 164
             P  PS          
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 28/138 (20%), Positives = 34/138 (24%), Gaps = 3/138 (2%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           +      V             +   PT     A+     S  P    P     P    SS
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
           P     PP        SP  P S   P +P    S        P NP S+     P    
Sbjct: 62  PINGMGPPF---SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 158 PPKRSPPSVPPQNPPPPP 175
                 P+ P  N     
Sbjct: 119 NGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 1/135 (0%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPA 70
            +       + +    S     +     + P    S  P    P    +     SS    
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
             PP S       P + S P +P        SP       P  S          N     
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTG-SPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 131 PSDPPANSPPPSNPP 145
           P+ P  N    +   
Sbjct: 125 PAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 23/132 (17%), Positives = 32/132 (24%)

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
                     +   +S   SP            P   P   SP    S     S P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP 192
            PP +       P ++  P   ++     SP    P NP        P       + VP 
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 193 SNVPPPPTQTPP 204
                  + T  
Sbjct: 127 HPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 20/133 (15%), Positives = 34/133 (25%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
                      ++   +S + P      ++P    +       P    S   T+S P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
             PP      P      + P +P       SP  S+P + +                 VP
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125

Query: 168 PQNPPPPPSSSPP 180
                   S +  
Sbjct: 126 AHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 60.5 bits (146), Expect = 5e-10
 Identities = 29/142 (20%), Positives = 41/142 (28%), Gaps = 7/142 (4%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP--PA 70
                    +    S      N   +SP        P+  P   P   +P    SP    
Sbjct: 3   HHHHHHVDDDDKMFSTQV---NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           SSP     PP S   +   P S    + PT+       +P   SP  P S+     PP  
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTG--SPQLSSPMNPVSSSEDIKPPLG 117

Query: 131 PSDPPANSPPPSNPPSNLPPPP 152
            +        PS   ++     
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 60.1 bits (145), Expect = 7e-10
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 2/138 (1%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                 +        ++   +S   P      ++P   P     P I  P  + +P +  
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLG--PGIGSPGQLHSPISTL 59

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P +   PP S  S P  P + S P +         P  S      S            
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 175 PSSSPPKNSPPAPIAVPP 192
                P +      +   
Sbjct: 120 GVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 23/131 (17%), Positives = 31/131 (23%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           +           +SS   P       +P    S  P    P    S   T S P +    
Sbjct: 9   VDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
                SSP      +    P     T SP  S P +   +     P          P   
Sbjct: 69  PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128

Query: 121 TPPPNSPPSPP 131
           +    S     
Sbjct: 129 SGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 1/128 (0%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                 S     S   P+      +P   P   P   SP   + P +    P + + PP 
Sbjct: 11  DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPF 70

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
               S    +    P++     S  +P    P N         P        +       
Sbjct: 71  SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSG 130

Query: 221 SPPPPSTK 228
           +    +  
Sbjct: 131 NMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 17/133 (12%), Positives = 34/133 (25%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
                      +   NS  + P+   + + P  +P        P  +  P  +  S    
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
             PP    S P       +   P+      +    +P +P++       P          
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125

Query: 230 LSPPPGIPVPSTE 242
             P   +   +  
Sbjct: 126 AHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 24/142 (16%), Positives = 33/142 (23%), Gaps = 4/142 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
           A +            S+    S   P       +P    S  P    P     P +    
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P N       PP S +  P        P  P    S+  P+ S P        ++ PP  
Sbjct: 62  PINGMG----PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117

Query: 201 QTPPTPASPIAPRPSNSSPNSP 222
                           S     
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 24/136 (17%), Positives = 38/136 (27%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +    +                   P+        S+ P        P Q   P  + S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
           P N    P +V  S + P     P TP    +      S    P  S++ + PP G+   
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 240 STENTPGNGTNPSSPE 255
                  +G   S  +
Sbjct: 122 LKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSP--PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                 +    S    SS   P      + PS  P+  P     P  L  P  +   P  
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIG-SPGQLHSPISTLSSPIN 64

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
              P     + P  P S     +P    +     +  P    P + +  I P    +   
Sbjct: 65  GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPM--NPVSSSEDIKPPLGLNGVL 122

Query: 221 SPPPPSTKRLSPPPGIP 237
             P   +  ++      
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 1/125 (0%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPIAVPPSNVP 196
                +          S   P  R   + P  +P   P   SP +   P      P N  
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPES 256
            PP     +P  P +     +        S +  SP   +        P          +
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 257 SSSPS 261
             S +
Sbjct: 127 HPSGN 131

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 21/99 (21%), Positives = 35/99 (35%)

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
              V   +       +    SP    ++   ++ P       +P    +P  + SSP + 
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
             P    +S P G    S   TP  G +  SP+ SS  +
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN 104

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQL-----------------KIGGGQGEREFKAEVEII 417
           L +G F  +      D +  A+K+                  KI       +FK E++II
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 418 SRIHHRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRV------KI 470
           + I + + ++  G  I++   + +IY+Y+ N+++            ++   +       I
Sbjct: 98  TDIKNEYCLTCEGI-ITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCI 156

Query: 471 AAGAARGLAYLH 482
                   +Y+H
Sbjct: 157 IKSVLNSFSYIH 168

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 23/166 (13%)

Query: 333 GSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD---GFADQNLLGEGGFGSVYKGY-L 388
            SG      N     G + H +       +V   D          +GEG  G V      
Sbjct: 8   SSGVDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREK 67

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
             GR+VA+K + +   Q       EV I+    H ++V +    +  +   ++ +++   
Sbjct: 68  HSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFL--- 124

Query: 449 TLYFHLHGEGRPVLDWATRVK-----IAA---GAARGLAYLHEDCK 486
                   +G  + D  ++V+     IA       + LAYLH    
Sbjct: 125 --------QGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGV 162

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREF-K 411
            + T     ++ + +     +GEG FG         DGR+  IK++ I      ERE  +
Sbjct: 12  DLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESR 71

Query: 412 AEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIA 471
            EV +++ + H ++V        +    ++ DY     L+  ++ +   +      +   
Sbjct: 72  REVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWF 131

Query: 472 AGAARGLAYLHE 483
                 L ++H+
Sbjct: 132 VQICLALKHVHD 143

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRI--HHRHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++  H   ++ L
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             Y I+D    ++ +   N  L   L  +    +D   R          +  +H+
Sbjct: 75  YDYEITDQYIYMVMECG-NIDLNSWLKKKKS--IDPWERKSYWKNMLEAVHTIHQ 126

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 26/134 (19%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F +  +LG+G FG V K     D R  AIK+++    +      +EV +++ ++H+++V 
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK-LSTILSEVMLLASLNHQYVVR 66

Query: 428 LVGYCISDDRRLL----------IY---DYVPNNTLYFHLHGEGRP-----VLDWATRVK 469
                +     +           ++   +Y  N TLY  +H E              ++ 
Sbjct: 67  YYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQI- 125

Query: 470 IAAGAARGLAYLHE 483
                   L+Y+H 
Sbjct: 126 -----LEALSYIHS 134

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHRH 424
           F +   +G G FGSV+K     DG   AIK+ K    G   E+    EV   + +  H H
Sbjct: 13  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH 72

Query: 425 LVSLVGYCISDDRRLLIY-DYVPNNTLYFHL--HGEGRPVLDWATRVKIAAGAARGLAYL 481
           +V       ++D  +LI  +Y    +L   +  +         A    +     RGL Y+
Sbjct: 73  VVRYFS-AWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI 131

Query: 482 HE 483
           H 
Sbjct: 132 HS 133

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRI--HHRHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++  H   ++ L
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             Y I+D    ++ +   N  L   L  +    +D   R          +  +H+
Sbjct: 94  YDYEITDQYIYMVMECG-NIDLNSWLKKKKS--IDPWERKSYWKNMLEAVHTIHQ 145

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 9/176 (5%)

Query: 313 GSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKA-TDGFAD 371
           GS S+  +  + + +     GS          +D  G+  +  +   +   +        
Sbjct: 3   GSVSSGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTH 62

Query: 372 QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           Q  +G G FG V++      G + A+K++++     E     E+   + +    +V L G
Sbjct: 63  QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL-----EVFRVEELVACAGLSSPRIVPLYG 117

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK 486
                    +  + +   +L   +   G   L     +     A  GL YLH    
Sbjct: 118 AVREGPWVNIFMELLEGGSLGQLIKQMGC--LPEDRALYYLGQALEGLEYLHTRRI 171

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+GGF   ++          A K +    +       +   E+ I   + H+H+V   
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 81

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G+   D+  + ++ +     +L   LH   + + +   R         G  YLH 
Sbjct: 82  GF-FEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEAR-YYLRQIVLGCQYLHR 133

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
               LG+ +    S  + Q               +   DP     S    +++ L     
Sbjct: 9   SGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSR-PESFFQQSFQRL----- 62

Query: 368 GFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHR 423
                + LG G +G V+K     DGR  A+K+      G +      AEV    ++  H 
Sbjct: 63  -----SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 424 HLVSLVGYCISDDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             V L      +   L +  +     +L  H    G   L  A            LA+LH
Sbjct: 118 CCVRLEQ-AWEEGGILYLQTELC-GPSLQQHCEAWGAS-LPEAQVWGYLRDTLLALAHLH 174

Query: 483 E------DCK 486
                  D K
Sbjct: 175 SQGLVHLDVK 184

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +LG+G   +V++G     G   AIK    I   +       E E++ +++H+++V L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA- 74

Query: 432 CISDDRRLLIY---DYVPNNTLYFHLHGEGRPVL---DWATRV--KIAAGAARGLAYLHE 483
              +          ++ P  +LY  L                V   +      G+ +L E
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVG----GMNHLRE 130

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F +  L+G GGFG V+K     DG+   IK++K        + + EV+ ++++ H ++V 
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY----NNEKAEREVKALAKLDHVNIVH 68

Query: 428 LVGY---------------CISDDRRLLIY-DYVPNNTLYFHLHGEGRPVLDWATRVKIA 471
             G                  S  + L I  ++    TL   +       LD    +++ 
Sbjct: 69  YNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELF 128

Query: 472 AGAARGLAYLHE 483
               +G+ Y+H 
Sbjct: 129 EQITKGVDYIHS 140

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 4/157 (2%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
                V +   +    S    N  ++S     +     P      P  + P S       
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
           ++       + P+R+       P  +SP S       +S   S+P S     P   +E  
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS----IPHLILELL 120

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
           K  P     Q            N            + 
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 157

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 7/142 (4%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
              P     SS    + +     P    + PP      P V+ P + + PP        T
Sbjct: 12  QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP-------VSNPPTRSPPP 117
               P+ +  +  P P ++ P S    S   S   +     P          P       
Sbjct: 72  YGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQA 131

Query: 118 PSSTPPPNSPPSPPSDPPANSP 139
                      +       ++ 
Sbjct: 132 KIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 12/154 (7%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP--PTSSSPPASSPPTSSP 78
           +    I   P       +       SK    +    PP      P  +SP + + P    
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS----------PP 128
                     P  +  +  P   +  P      +      +S+P              P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
            P       +       +       S+     + 
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKM 159

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 23/150 (15%), Positives = 32/150 (21%), Gaps = 4/150 (2%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS---TPPPNSPPSPPSDPPANS 138
           +        PS    S    +        P      P +     P  + P   + PP  S
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 139 PPPSNPPSNLPPPPPSSVEP-PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
                   + P     S  P P  S P             +    S P  I       P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            P       A     + + S          
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 16/150 (10%), Positives = 27/150 (18%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           +         S    S+   +    S          PP      P  + P   + PP  S
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 127 PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
                +     S    +   +     P S+                 P          P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 187 PIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
              V    +     +               
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 24/133 (18%), Positives = 35/133 (26%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S+      +A+   P    + PPT     P    P S   PP  S     +    P  + 
Sbjct: 21  SSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAI 80

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 P  SSP +       +   +S P S P      +   P       +        
Sbjct: 81  KSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQE 140

Query: 122 PPPNSPPSPPSDP 134
               S     S  
Sbjct: 141 QANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 26/180 (14%), Positives = 39/180 (21%), Gaps = 5/180 (2%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
           +            S  +  S            P N    PP+  +        +    PP
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 173 PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS- 231
                           A+      P  +                SSP S P    + L  
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKC 122

Query: 232 --PPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAV--AVGIIAFSLIGL 287
               P +             N S  E  S+          T+   V  A   I F  + +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKV 182

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 21/153 (13%), Positives = 35/153 (22%), Gaps = 15/153 (9%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD---PPANSPPPSNPPSN 147
            +          P     +   ++    S   P N    PP+D    P  + P S     
Sbjct: 5   EAMSQVIQAM--PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP- 61

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT----- 202
            P       +     P        P P +SSP      + +    ++ P           
Sbjct: 62  -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120

Query: 203 ---PPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
              P  P              +      K  + 
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLV--- 429
           LG GGFG V +      G +VAIKQ +       RE +  E++I+ +++H ++VS     
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP 81

Query: 430 ---GYCISDDRRLLIYDYVPNNTLYFHLHGEGRP-VLDWATRVKIAAGAARGLAYLHE 483
                   +D  LL  +Y     L  +L+       L       + +  +  L YLHE
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE 139

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 359 YEELVKATD---GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEV 414
           YE + +  D    +     LG+G FG VYK      G   A K ++    +   ++  E+
Sbjct: 8   YEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI 67

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAA-- 472
           EI++   H ++V L+G    D +  ++ ++ P   +   +    R +    T  +I    
Sbjct: 68  EILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGL----TEPQIQVVC 123

Query: 473 -GAARGLAYLHEDCK 486
                 L +LH    
Sbjct: 124 RQMLEALNFLHSKRI 138

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREF-KAEVEIISRIHHRHLVSLVG 430
            +G G +G   K     DG+ +  K+L  G   + E++   +EV ++  + H ++V    
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 72

Query: 431 -YCISDDRRLLIY-DYVPNNTLYFHL---HGEGRP-----VLDWATRVKIAAGAARGLAY 480
                 +  L I  +Y     L   +     E +      VL   T++         L  
Sbjct: 73  RIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL------TLALKE 126

Query: 481 LHE 483
            H 
Sbjct: 127 CHR 129

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 60.0 bits (144), Expect = 1e-09
 Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 4/171 (2%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
             +++  A++  T +         S       A+ P  +S P  V         P    P
Sbjct: 7   AAAAAAAAAAAATGTEAGPGTAGGSENGSE-VAAQPAGLSGPAEVGPGAVGERTPRKKEP 65

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           P  SPP   ++PP ++ P + P        P      +        +           + 
Sbjct: 66  PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY---RE 122

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
              +   +          +          P P   +P      S       
Sbjct: 123 MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 59.2 bits (142), Expect = 2e-09
 Identities = 27/163 (16%), Positives = 44/163 (26%), Gaps = 7/163 (4%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            A+    +++    +         S   +         S P  + P       P +  PP
Sbjct: 7   AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPP 66

Query: 118 PSSTPPPNSPP---SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP----PQN 170
            +S P   + P   + P   P   P  + P        P      +R    V      ++
Sbjct: 67  RASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126

Query: 171 PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
                             A     +PPPP Q PP   +   P 
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPE 169

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 3/176 (1%)

Query: 39  SPPPPPVSKPPTTSPP---PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           S      +     +      + P +   + +    ++ P     PA   P +    +P  
Sbjct: 3   SGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRK 62

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
             PP  SPP  ++ PP  + P    T  P S     +                       
Sbjct: 63  KEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYRE 122

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           ++    +       +     + +  +   P P    P           P+     A
Sbjct: 123 MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAA 178

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 56.9 bits (136), Expect = 1e-08
 Identities = 27/173 (15%), Positives = 43/173 (24%), Gaps = 11/173 (6%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKP----PTTSPPPSPPASNP 62
              AA +++                  N  + +  P  +S P    P      +P    P
Sbjct: 6   KAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEP 65

Query: 63  PTSSSPPASSPPTSSPPPASNP--PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           P +S P   + P  S  P + P     S  P          +  P       R       
Sbjct: 66  PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGI-----AETPEGRRTSRRKRAKVEY 120

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                S  +   D   +    +         PP   + P        P+ P  
Sbjct: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 54.2 bits (129), Expect = 6e-08
 Identities = 32/205 (15%), Positives = 52/205 (25%), Gaps = 13/205 (6%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +   T +   P +     +     + P   S P    P  +    P   EPP+ SPP   
Sbjct: 15  AAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPG-- 72

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR---PSNSSPNSPPP 224
                 PP S+ P+  P     V P +  P  T    TP      R              
Sbjct: 73  --GLAEPPGSAGPQAGPT----VVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126

Query: 225 PSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG--TAGTVVIAVAVGIIAF 282
            +             + +        P  P++     N       +G    A    +   
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHD 186

Query: 283 SLIGLVVWCLRRRKKEVSGLNGVYI 307
            +      C             V++
Sbjct: 187 RMTSQEAACFPDIISGPQQTQKVFL 211

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 19/161 (11%), Positives = 37/161 (22%), Gaps = 5/161 (3%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
             ++   A+   T +   + P ++  + +     + P   S P                +
Sbjct: 7   AAAAAAAAAAAATGTE--AGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKE 64

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           PP  SPP           P +       S   +       P      +        V   
Sbjct: 65  PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRA---KVEYR 121

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            +                 R + +      PP   +  P  
Sbjct: 122 EMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEE 162

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPP-------PPVSNPPKSSPPPPPVSKPPTTSPPPS 56
            +P       +SPP  ++ PP  + P       P  + P ++     P  +  +      
Sbjct: 58  RTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK 117

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
                   S +  +     S     +        P PP  +PP          P      
Sbjct: 118 VEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGA 177

Query: 117 PPSSTPPPNSP 127
              S  P +  
Sbjct: 178 AFQSRLPHDRM 188

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 19/93 (20%), Positives = 27/93 (29%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
           P  P     P  +         P T + P   + PT  P P  N    +P P  PA    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           T++          R     ++       P P  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 20/110 (18%), Positives = 27/110 (24%), Gaps = 7/110 (6%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           + P SP       ++      P T +PP     PT  P P           P P   N  
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPS-------NPPSNLPPPPPS 154
             +          +             PPP+         P   P  P  
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 1/94 (1%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
           +P   + P  P     T +    P    PP   + P   P         NP    P    
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 94  -PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
              ++                +       PPP  
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P     P ++     +N   ++P PP +   PT  P P         +   PA    T +
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVS-----NPPTRSPPPPSSTP 122
              A+         +    +   + PPP  +       P R P  P    
Sbjct: 65  AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 6/112 (5%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP-PTISPPPPVSNPPTRSPPPPSST 121
           PTS   P  +  T +      P T +PP    A +  P         NP    P   ++T
Sbjct: 5   PTSPGTPGVAAATQAANGG--PATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSV---EPPKRSPPSVPPQN 170
                           +          PPP  ++V   E P+R P     QN
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           P A + P +    A+    +  P +P   +    + P     P     P   + P P   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALG--AAPTGDPKPKKNKKPKNPTPPRPAGD 59

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
            +  +   A                   V PP      V  + P   P+    +N
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 5/113 (4%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P  P S            +     +P P    + P     P  +  P +  PP      +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST-----PPPNSPPSPPSDPP 135
           +                   ++      PPP+         P   P+ P    
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.8 bits (129), Expect = 7e-08
 Identities = 15/94 (15%), Positives = 27/94 (28%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           P +P +   P ++     +N    +P PP+    P   P P  +    +P P  P  +  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                     +                  PP  +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV--PPQNPPPPP 175
           P++   P +P    +   AN  P +  P  L   P    +P K   P    PP+      
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
           + +    +    +    +          P P  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 18/111 (16%), Positives = 29/111 (26%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           +P  P     +     +N    +P PP      +  P P  +K P    PP P   N   
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           ++               +        P P  ++      P      P    
Sbjct: 64  AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 16/107 (14%)

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
           P+ P+ P       +   +N  P  P+             P   P P  +  PKN  P  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAP------PALGAAPTGDPKPKKNKKPKNPTP-- 53

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
                   P P        A     R       +    +   + PPP
Sbjct: 54  --------PRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 16/81 (19%), Positives = 28/81 (34%)

Query: 2  SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
          +A +       ++  PP +   PT  P P  +  PK+  PP P     T +   +    +
Sbjct: 14 AAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREH 73

Query: 62 PPTSSSPPASSPPTSSPPPAS 82
               +    +     PPP  
Sbjct: 74 LRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 22/95 (23%)

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
           +P  P S   P  +     A      P PP         P   +       +PP P+   
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 230 LSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
            +   G              N  +      P    
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 6/94 (6%)

Query: 115 PPPPSSTPPPNSPPSPPS---DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN- 170
           P  P+S   P    +  +    P   +PP         P P  + +P   +PP     N 
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 171 --PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                  +         A        V PPPT  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 4/110 (3%)

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP 192
           DP A  P     P        ++  P   +PP++       P      K   P P     
Sbjct: 1   DPAA--PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 193 SNVPPPPTQTPPTPASPIAPRPSNSSPNS--PPPPSTKRLSPPPGIPVPS 240
            N                    +  +     PPP     +        P+
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPT 108

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 27/96 (28%)

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           ++P     P   A   +    P T  PP   +     P       P  P+  R +     
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVV 272
                     +  +  +  + ++       T  TVV
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVV 98

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 20/127 (15%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           +     +G+G  G+VY    +  G+EVAI+Q+ +     +     E+ ++    + ++V+
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK-----IAA---GAARGLA 479
            +   +  D   ++ +Y+            G  + D  T        IAA      + L 
Sbjct: 82  YLDSYLVGDELWVVMEYL-----------AGGSLTDVVTETCMDEGQIAAVCRECLQALE 130

Query: 480 YLHEDCK 486
           +LH +  
Sbjct: 131 FLHSNQV 137

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHH--RHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++      ++ L
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             Y I+D    ++ +   N  L   L  +    +D   R          +  +H+
Sbjct: 122 YDYEITDQYIYMVMECG-NIDLNSWLKKKKS--IDPWERKSYWKNMLEAVHTIHQ 173

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 25/160 (15%), Positives = 39/160 (24%), Gaps = 8/160 (5%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                 N  S  P      T      + +  + +   P V          +   +  P +
Sbjct: 10  RKKVMGNRRSDEPAK----TKKGLSSILDAARWNRGEPQVPDF---RHLKAEVDAEKPGA 62

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           +         S       P   +P  S    S  +    P    P       P   P   
Sbjct: 63  TDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQG-PMSL 121

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
              +PP      +   S  P +   P  S +E     PP 
Sbjct: 122 ESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 27/158 (17%), Positives = 43/158 (27%), Gaps = 6/158 (3%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
            K         +P  T    S          +      P      A       P  +   
Sbjct: 10  RKKVMGNRRSDEPAKTKKGLSSIL--DAARWNRGEPQVPDFRHLKAE-VDAEKPGATDRK 66

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
                 S    +  P   +   P  +  P S  SP  +P A++P      S   P    S
Sbjct: 67  GGVGMPSRDRNIGAPGQDT---PGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLES 123

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           + PP+ +      ++P P     P ++        PP 
Sbjct: 124 LAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 23/146 (15%), Positives = 32/146 (21%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                  SS       N      P       +     P  +        PS   +     
Sbjct: 23  AKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPG 82

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
              P  S    S       P +  P     SSP        ++ P +      + +P P 
Sbjct: 83  QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPG 142

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPP 151
               P        P        L PP
Sbjct: 143 DEGEPGRSGLELEPEEPPGWRELVPP 168

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 22/163 (13%), Positives = 35/163 (21%), Gaps = 11/163 (6%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP---------PPPSSTPPPNSPPSPP 131
             N  +  P  +    S    +       P                P +T        P 
Sbjct: 14  MGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPS 73

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP--PPSSSPPKNSPPAPIA 189
            D    +P    P  +L P    S +    +   +   +  P  P S             
Sbjct: 74  RDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEG 133

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
               +  P     P      + P          PP +   L  
Sbjct: 134 AETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPK 176

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 26/152 (17%), Positives = 34/152 (22%), Gaps = 12/152 (7%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
           R    P+ T    S     +      P   +             E     P +   +   
Sbjct: 17  RRSDEPAKTKKGLSSILDAARWNRGEPQVPDFR-------HLKAEVDAEKPGATDRKGGV 69

Query: 173 PPPSSSPPKNSPP--APIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN---SPPPPST 227
             PS      +P    P           P + P   A       S   P    S  PP +
Sbjct: 70  GMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPES 129

Query: 228 KRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
                    P P  E  PG       PE    
Sbjct: 130 TDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +            R VA+K LK G    E     +E++I+  I HH ++V
Sbjct: 30  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 89

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +L+G C      L +I ++     L  +L  +    + + T+          +  +  D 
Sbjct: 90  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDL 149

Query: 486 K 486
           K
Sbjct: 150 K 150

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +LG+G   +V++G     G   AIK    I   +       E E++ +++H+++V L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA- 74

Query: 432 CISDDRRLLIY---DYVPNNTLYFHLHGEGRPVL---DWATRV--KIAAGAARGLAYLHE 483
              +          ++ P  +LY  L                V   +      G+ +L E
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVG----GMNHLRE 130

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+GGF   ++          A K +    +       +   E+ I   + H+H+V   
Sbjct: 48  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 107

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           G+   +D   ++ +     +L   LH   + + +   R         G  YLH 
Sbjct: 108 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEAR-YYLRQIVLGCQYLHR 159

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +L EGGF  VY+   +  GRE A+K+L     +  R    EV  + ++  H ++V     
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94

Query: 432 CISDDRR--------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
                          LL+ +      + F    E R  L   T +KI     R + ++H
Sbjct: 95  ASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH 153

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 335 GPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGRE 393
           GPGS   +    PG       MF        +D +  Q +LG+G FG V        G+E
Sbjct: 1   GPGSMMDHLHATPG-------MFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQE 53

Query: 394 VAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL-LIYDYV 445
            A+K +   ++     +     EV+++ ++ H +++ L  +   D     L+ +  
Sbjct: 54  CAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF-EDKGYFYLVGEVY 108

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQL- 399
            +    G L  +  MF   +    ++ +     LG G +G V          E AIK + 
Sbjct: 12  ENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIR 71

Query: 400 --KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGE 457
              +      +    EV ++  + H +++ L  +        L+ +      L+  +   
Sbjct: 72  KTSVSTSSNSK-LLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR 130

Query: 458 GR-PVLDWATRVKIAAGAARGLAYLHE 483
            +   +D A  +K        + YLH+
Sbjct: 131 MKFNEVDAAVIIKQVLSG---VTYLHK 154

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 31/168 (18%)

Query: 332 IGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDG 391
           + + P +    +P D             +   +    + +  ++G G FG V++  L + 
Sbjct: 5   MSNAPLNGVKLNPLDDPNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVES 64

Query: 392 REVAIKQLKIGGGQGEREFKA-EVEIISRIHHRHLVSLVGYCISDDRRL------LIYDY 444
            EVAIK++       ++ FK  E++I+  + H ++V L  +  S+  +       L+ +Y
Sbjct: 65  DEVAIKKVLQ-----DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY 119

Query: 445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAA----------RGLAYLH 482
           VP  T+Y               ++K                R LAY+H
Sbjct: 120 VP-ETVY--------RASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH 158

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 374 LLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVS 427
            LG GG  +VY     D     +VAIK + I   + E   + F+ EV   S++ H+++VS
Sbjct: 18  KLGGGGMSTVYLAE--DTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVS 75

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++     DD   L+ +Y+   TL  ++   G   L   T +        G+ + H+
Sbjct: 76  MIDVDEEDDCYYLVMEYIEGPTLSEYIESHGP--LSVDTAINFTNQILDGIKHAHD 129

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 374 LLGEGGFGSVYKGYLPDGREV-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           +LG+GGFG V    +    ++ A K+L+   I   +GE     E +I+ +++ R +VSL 
Sbjct: 191 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLA 250

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            Y       L L+   +    L FH++  G+     A  V  AA    GL  LH 
Sbjct: 251 -YAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR 304

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-F 410
           SR +  +E +            +G GGFG V++     D    AIK++++   +  RE  
Sbjct: 2   SRYLTDFEPI----------QCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKV 51

Query: 411 KAEVEIISRIHHRHLVSLVGYCISDD 436
             EV+ ++++ H  +V      +   
Sbjct: 52  MREVKALAKLEHPGIVRYFNAWLETP 77

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 29/177 (16%), Positives = 42/177 (23%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
            +  P PP ++ P      PSP        +S  + S   + PP A     + PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
                    P     P     P        S P+    P   S    +  S L      +
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
            E   R               +   +  P  P                P     + P
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 29/174 (16%), Positives = 45/174 (25%), Gaps = 4/174 (2%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS----NPPTSSSPPASSPPTSSPPPASN 83
           P PP   PPK +   P  ++P   +P  +   S     PP +     + PP       S 
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
              SSP        P   SP   +      +  PP  T   +                  
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
                                   P+ P    + +  +    A   +P   +P 
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 3/176 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
               P P   A       +P  + P   +P  A    + S   + P ++P      PP  
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASA---TSGSRKRARPPAAPGRDQARPPAR 67

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                S    SS   P +P  P    P      S P +  PP   S+ +    S  +   
Sbjct: 68  RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCL 127

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPP 224
           Q      +      +         +       + P    +P   R    +    P 
Sbjct: 128 QRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.0 bits (128), Expect = 6e-08
 Identities = 24/173 (13%), Positives = 37/173 (21%)

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 PP  +PP  +    S    +   P+   S     + PP         PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                  S PS P A   P    P         +   P     +          S     
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
               A +    ++         P             +P      +  +   P 
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.0 bits (128), Expect = 7e-08
 Identities = 21/179 (11%), Positives = 37/179 (20%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           +   P P    P      +P  + P   +   A+S       P + P      P      
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
             ++      S P     P   S        +P +  P +     +  +           
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
               +       +      S  P+                        P  P    P  
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.6 bits (127), Expect = 8e-08
 Identities = 23/174 (13%), Positives = 35/174 (20%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           P      PP     T SP      +    +S     + P ++P      P +        
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
               + S P     P   SP        P +   P      +    S   S L       
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
                    +        P +   P+                     P      
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 28/180 (15%), Positives = 42/180 (23%), Gaps = 3/180 (1%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             P PP   PP ++   P    P       P S    +     PPA+     + PPA   
Sbjct: 13  RRPGPPRIAPPKLACRTP---SPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
              S    S+P T   P  P   SP         +                +   S    
Sbjct: 70  LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
                       ++      S     +  P     +  P               + +P  
Sbjct: 130 ARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 24/169 (14%), Positives = 40/169 (23%), Gaps = 7/169 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPT-------TSPPP 55
             +P   A  + SP  P    P  +           + P    ++PP             
Sbjct: 19  RIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVS 78

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           SP     P   + P+         PA+  P          +     S          R  
Sbjct: 79  SPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVR 138

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
              +S        +P ++     P     P+       +    P    P
Sbjct: 139 ALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.7 bits (122), Expect = 4e-07
 Identities = 18/179 (10%), Positives = 33/179 (18%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
                 PP          +P P        +     S      P +P  D          
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
             S      PS+ E P       P Q       ++       +       +      Q  
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 204 PTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
               + +    +++              P       +      +            P  
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 22/171 (12%), Positives = 31/171 (18%), Gaps = 2/171 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P    P   +   P P         P   ++  +    PP         PP       
Sbjct: 15  PGPPRIAPPKLACRTPSPARPAL--RAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                S P++      P   S               P   S     +     S    +  
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                     S   A              P        +R      P  P 
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 43.6 bits (101), Expect = 1e-04
 Identities = 17/151 (11%), Positives = 27/151 (17%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            AP+     +   + PP         PP              P +      P    P   
Sbjct: 38  RAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQK 97

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              S+      P  +S          +            +      +     S  P +  
Sbjct: 98  IKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEG 157

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
            P                        L  P 
Sbjct: 158 RPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 21/128 (16%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           F     +G+G FG V+KG      + VAIK + +   + E E  + E+ ++S+    ++ 
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR-----VKIAA---GAARGL 478
              G  + D +  +I +Y+            G   LD          +IA       +GL
Sbjct: 84  KYYGSYLKDTKLWIIMEYL-----------GGGSALDLLEPGPLDETQIATILREILKGL 132

Query: 479 AYLHEDCK 486
            YLH + K
Sbjct: 133 DYLHSEKK 140

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 352 HSRSMFTYEELVKATDG---FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
             R +   +E          F     LGEG +GSVYK      G+ VAIKQ+ +      
Sbjct: 11  PRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV--ESDL 68

Query: 408 REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR 467
           +E   E+ I+ +    H+V   G    +    ++ +Y    ++   +    + +    T 
Sbjct: 69  QEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTL----TE 124

Query: 468 VKIAA---GAARGLAYLHEDCK 486
            +IA       +GL YLH   K
Sbjct: 125 DEIATILQSTLKGLEYLHFMRK 146

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 309 PSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDG 368
                + +    S        P+      +  V+ P  P    H         +      
Sbjct: 32  SRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPPAPFDHRIVTAKQGAVNSFYT- 90

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
            +   +LG G FG V+K      G ++A K +K  G + + E K E+ +++++ H +L+ 
Sbjct: 91  VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ 150

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     S +  +L+ +YV
Sbjct: 151 LYDAFESKNDIVLVMEYV 168

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG V K       +E A+K +                EVE++ ++ H +++ L  
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST-ILREVELLKKLDHPNIMKLFE 88

Query: 431 YCISDDRRL-LIYDYV 445
               D     ++ +  
Sbjct: 89  IL-EDSSSFYIVGELY 103

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG G F  V+       G+  A+K +K      +   + E+ ++ +I H ++V+L    
Sbjct: 16  VLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIY 75

Query: 433 ISDDRRLLIYDYVP 446
            S     L+   V 
Sbjct: 76  ESTTHYYLVMQLVS 89

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK 400
                  G+  +  M+  ++  K  + +     LG G +G V          E AIK +K
Sbjct: 11  RENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIK 70

Query: 401 -------------IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
                            +   E   E+ ++  + H +++ L           L+ ++ 
Sbjct: 71  KSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFY 128

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G FG V++      GR    K +       +   K E+ I++++HH  L++L     
Sbjct: 59  LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE 118

Query: 434 SDDRRLLIYDYV 445
                +LI +++
Sbjct: 119 DKYEMVLILEFL 130

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRH 424
           D +  Q ++G G    V   Y  P   +VAIK++ +   Q   +    E++ +S+ HH +
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 425 LVSLVGYCISDDRRLLIYDYVPN---NTLYFHLHGEGRPVLDWATRVKIAA---GAARGL 478
           +VS     +  D   L+   +       +  H+  +G           IA        GL
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 134

Query: 479 AYLHED 484
            YLH++
Sbjct: 135 EYLHKN 140

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 53.0 bits (126), Expect = 8e-08
 Identities = 27/180 (15%), Positives = 47/180 (26%), Gaps = 46/180 (25%)

Query: 352 HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG-------- 403
             +    +   +  T+       +GEG FG V++    D   VAIK + I G        
Sbjct: 6   SQKGPVPFSHCL-PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSH 63

Query: 404 GQGEREFKAEVEIISRIH---------HRHLVSLVGYCISDDRR----LLIYDYV----- 445
            +   E   E+ I   +              + L              L  +D+      
Sbjct: 64  QKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKG 123

Query: 446 ---------PNNTLYFH---------LHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
                     ++ L+           L      +   AT   I       LA      ++
Sbjct: 124 SANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRF 183

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
            +LG G  G+V       GR VA+K++ I           E+++++    H +++    Y
Sbjct: 21  KILGYGSSGTVVFQGSFQGRPVAVKRMLI---DFCDIALMEIKLLTESDDHPNVIRY--Y 75

Query: 432 CISDDRRLL----------IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           C     R L          + D V +  +      E   +      + +    A G+A+L
Sbjct: 76  CSETTDRFLYIALELCNLNLQDLVESKNVS----DENLKLQKEYNPISLLRQIASGVAHL 131

Query: 482 HE 483
           H 
Sbjct: 132 HS 133

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFK---AEVEIISRIHHRH 424
           F+D   +G G FG+VY    + +   VAIK++   G Q   +++    EV  + ++ H +
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRV----KIAA---GAARG 477
            +   G  + +    L+ +Y           G    +L+   +     +IAA   GA +G
Sbjct: 116 TIQYRGCYLREHTAWLVMEY---------CLGSASDLLEVHKKPLQEVEIAAVTHGALQG 166

Query: 478 LAYLHEDCK 486
           LAYLH    
Sbjct: 167 LAYLHSHNM 175

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 374 LLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL-- 428
            +  GG G +Y       +GR V +K L   G    +    AE + ++ + H  +V +  
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFN 146

Query: 429 VGYCISDDRRLLIY---DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                      + Y   +YV   +L      +    L  A  +         L+YLH 
Sbjct: 147 FVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK----LPVAEAIAYLLEILPALSYLHS 200

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 9/106 (8%), Positives = 20/106 (18%), Gaps = 2/106 (1%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
            V       P P   +    +            T           +    A+   T+   
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDG--QVHAEKLTANEIVTALSV 386

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
           P    +          V + P ++     +               +
Sbjct: 387 PLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 17/162 (10%), Positives = 28/162 (17%), Gaps = 19/162 (11%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISP-------PPPVSNPPT-----------RSPP 116
              P          P   P   +  +          P P     T               
Sbjct: 271 LDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREV 330

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
               T  P    S    P  ++       ++        V   K +   +      P   
Sbjct: 331 VAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVD 390

Query: 177 SSPPK-NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
            +    +   A +   P                      S S
Sbjct: 391 PTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 21/99 (21%), Positives = 33/99 (33%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
            +  ++       ++ P      + P+++        A          A  P   +PPP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
                       PP   PP   PPPP   PP  +PP+ P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
                      +     +   + + P +  A     ++    +       PP   + PP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 125 NSPP-SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             PP   P   P   PP   PP   PPPP  +  PP+ +PP+ PPQ
Sbjct: 399 GYPPQGYP---PQGYPPQGYPPQGYPPPPQGA--PPQGAPPAAPPQ 439

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 3/107 (2%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           P                 +  T  P   SS   P++  +   +  A         +    
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQA---A 387

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
            PP    PP +  P         PP   PP+  PP P   PP   PP
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPP 434

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 17/99 (17%), Positives = 25/99 (25%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
               +     A +  P    S+    +    +                        PP  
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
            PP    P    P    P     PP  +PP   P ++PP
Sbjct: 400 YPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 27/120 (22%), Positives = 34/120 (28%), Gaps = 12/120 (10%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P                 +  T  P    S+   S+                   A+ PP
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
              +PP    P    PP   PP   PP            PPPP   PP  +PP   + PP
Sbjct: 391 QGYAPPPQGYPPQGYPPQGYPPQGYPPQG---------YPPPPQGAPPQGAPP---AAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 7   GPPAANSSSPPPPVSNPPTI--SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                 +       +  P    S   P ++  +       + K         P    PP 
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPS--PPASSPPTISPPPPVSN 109
              PP   PP   PP    P    PPP   PP  +PP  +PP  V N
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPA-APPQGVDN 443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/103 (18%), Positives = 23/103 (22%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
                           P   SS   P      +                 PP   A PP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
             PP        P     P+     P   PP      +PP G+
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP-PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                    D  A +  P+   S+  P    + ++        +  Q    PP    P  
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
               P   PP   PP        P  P    P  + P +PP
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                  +    ++    P+   +++ P ++          + ++  ++   + PPQ   
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQM--KEMMAMMQKMQQQQAAYPPQGYA 394

Query: 173 PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           PPP   PP+  PP     PP   PP     PP  A P    P+
Sbjct: 395 PPPQGYPPQGYPPQG--YPPQGYPPQGYPPPPQGAPPQGAPPA 435

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPA 59
           +  +         +    +       PP   + PP+  PP   PP   PP   PP   P 
Sbjct: 363 APSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYP- 421

Query: 60  SNPPTSSSPPASSPPTSSPPPASN 83
             PP   +PP  +PP + P    N
Sbjct: 422 --PPPQGAPPQGAPPAAPPQGVDN 443

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLV 426
           F    L+G G +G VYKG  +  G+  AIK + +  G  E E K E+ ++ +  HHR++ 
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV-TGDEEEEIKQEINMLKKYSHHRNIA 84

Query: 427 S-----LVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAA---GAARG 477
           +     +       D +L L+ ++    ++   +       L       IA       RG
Sbjct: 85  TYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLK---EEWIAYICREILRG 141

Query: 478 LAYLHEDCK 486
           L++LH+   
Sbjct: 142 LSHLHQHKV 150

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/147 (19%), Positives = 45/147 (30%), Gaps = 9/147 (6%)

Query: 344 PQDPGGLGHSRSMFTYEELVKATDGFAD---QNLLGEGGFGSVYKGYLPD-GREVAIKQL 399
                GL    S        +    F     + L+G GG G VY+       R VA+K +
Sbjct: 8   HHHSSGLVPRGSHMDGTAESREGTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLM 67

Query: 400 K--IGGGQGERE-FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG 456
              +      R   + E     R+   H+V +  +   D +  +    +    L   L  
Sbjct: 68  SETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR 127

Query: 457 EGRPVLDWATRVKIAAGAARGLAYLHE 483
           +G   L     V I       L   H 
Sbjct: 128 QGP--LAPPRAVAIVRQIGSALDAAHA 152

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/236 (10%), Positives = 42/236 (17%), Gaps = 15/236 (6%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS------------- 67
           S    +    P S            +   +T   P    SN                   
Sbjct: 87  SPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINC 146

Query: 68  --PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
             P       SS   ++    ++ P +    +   I P    +N P            PN
Sbjct: 147 GVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPN 206

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
           +          N                 +         S    +       S  K+   
Sbjct: 207 ASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGV 266

Query: 186 APIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
                    +    T+      +      +                 P      S 
Sbjct: 267 LFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIETKLSR 322

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 25/240 (10%), Positives = 47/240 (19%), Gaps = 22/240 (9%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP--SST 121
                    P +      S    S+   S        +S            P P   +  
Sbjct: 88  PRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCG 147

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS-------VEPPKRSPPSVPPQNPPPP 174
            P +   +  S   +N+  P+  P N       +          P+     +     P  
Sbjct: 148 VPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNA 207

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
                  N      +     +         +  S ++   S  S       S ++     
Sbjct: 208 SKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGVL 267

Query: 235 GIPV-------------PSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIA 281
                                N      N       +S                 +GI +
Sbjct: 268 FSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIETKLSRIGISS 327

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 21/121 (17%), Positives = 28/121 (23%), Gaps = 3/121 (2%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
            S    N P    +D     PPP  P +  P   P S               P   P++ 
Sbjct: 11  DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERAS---TAAPVASPAAP 67

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPV 238
            P +S         SN     T       S      S  +           +   P    
Sbjct: 68  SPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDW 127

Query: 239 P 239
            
Sbjct: 128 A 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 17/115 (14%), Positives = 32/115 (27%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS 82
           P           PP   P        P ++   +  AS     +SP A SP +S      
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
           +  +++   +  A++          S    R           + P +  +     
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 13/105 (12%), Positives = 23/105 (21%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           + S   ++ P         P P PP  S  +    P  +          +    P +P  
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             S         SN          ++             +     
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 18/117 (15%), Positives = 35/117 (29%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
           SN   + P         P   PPPP +  P  +P   +++    S  +P + P A SP  
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
           S           +  +    +  +   Q       +     +    + +   +    
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 12/100 (12%), Positives = 23/100 (23%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P+          PPPP  +  +    P  +               P    P S     
Sbjct: 17  NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
             +S S        ++    S         +    +   +
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 15/103 (14%), Positives = 26/103 (25%)

Query: 12  NSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPAS 71
           N  +  P         P PP   P  +SP   P S   +     +      P + SP +S
Sbjct: 13  NFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSS 72

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                    ++    ++   +   S                  
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 14/124 (11%), Positives = 24/124 (19%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           S     +  P         P  PP           P S   +      ++     + PSP
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAV 190
            S          +          ++    +    S                + P    A 
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

Query: 191 PPSN 194
               
Sbjct: 130 YFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 14/116 (12%), Positives = 26/116 (22%), Gaps = 3/116 (2%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           +N P         P    PPP++  P ++P  +  ++              P    P  S
Sbjct: 16  ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERA---STAAPVASPAAPSPGSS 72

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
                 S  S        +   +           +           V  +      
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           +N P          +PP   P  + P     T  S  AS+   S+  P ++P   SP  S
Sbjct: 16  ANLPNGYMTDLQRPQPPPPPPSAASP---GATPGSAAASAERASTAAPVASPAAPSPGSS 72

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
                  ++S     +     +                 +  
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 2/113 (1%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P         P   PP  S+    + P S+   A    T++P  SP A SP +       
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
           S+         ++     S         A           L        +  K
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGA--GRGGAAARVLLVIDEPHTDWAK 129

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 3/104 (2%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
             A  P     +   P PP   PP  S   P + P  ++      S     + P +P   
Sbjct: 14  FMANLPNGYMTDLQRPQPP---PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 70

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           +        + S        A+    S         +    +  
Sbjct: 71  SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 28/97 (28%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                      PPPP S     + P   +   + +    PV+ P   SP  S       +
Sbjct: 21  GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
            S+    +   ++   +      S       ++   +
Sbjct: 81  LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVL 117

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 13/102 (12%), Positives = 25/102 (24%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
            ++ P           PPP      S    P  +         + P ++P   S   +  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
               S    +   T++   +  +      S          R 
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 31/114 (27%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            ++ P            PPPP S     + P  ++     +  + P   PA   P S+  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPP 199
                   ++V+    +  +   +        +    +    + V         
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 11/97 (11%), Positives = 21/97 (21%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P        R  PPP      +   +P S   +     +  P   P  P           
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            S+         +++   +      +           
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 15/119 (12%), Positives = 34/119 (28%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
            ++ P         P P   PP+++ P + P S+  +       +   + + P P S+  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                S  +     +   +   S               +   +   + P    +   K 
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 25/106 (23%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
           S+   ++  P         P PPP      +       A+     +S  A     ++P P
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
            S+           A    T +     S                  
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 12/102 (11%), Positives = 23/102 (22%), Gaps = 2/102 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
               P         P    PP S+    + P ++         + P +SP   +P P  S
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA--APSPGSS 72

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
                     ++     +  +                     
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           SN  +NLP    + ++ P+  PP     +P   P S+                       
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAA---------------SAERAS 56

Query: 202 TPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           T    ASP AP P +S         +  +         +     G G+  +    +
Sbjct: 57  TAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 12/106 (11%), Positives = 22/106 (20%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                 P      P          S          ++P   P +  P +S      +S  
Sbjct: 23  MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLS 82

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                  A++  T S         +    +          P    +
Sbjct: 83  NAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +LGEG F +V     L   RE AIK L+    I   +       E +++SR+ H   V L
Sbjct: 37  ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPY-VTRERDVMSRLDHPFFVKL 95

Query: 429 VGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
             +   DD +L     Y  N  L  ++   G          +   A     L YLH 
Sbjct: 96  Y-FTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDET---CTRFYTAEIVSALEYLHG 148

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 336 PGSDFVNSPQDPGGLGHSRSM-FTYEELVKAT-DGFADQNLLGEGGFGSVYKGYLPDGRE 393
           P  +F++S          R + + + E      D F D  +LG GGFG V+   +    +
Sbjct: 158 PFQEFLDSLY------FLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGK 211

Query: 394 V-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL-LIYDYVPNN 448
           + A K+L    +   +G +    E +I++++H R +VSL  Y       L L+   +   
Sbjct: 212 LYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLA-YAFETKTDLCLVMTIMNGG 270

Query: 449 TLYFHLH--GEGRPVLDWATRVKI-AAGAARGLAYLHE 483
            + +H++   E  P      R     A    GL +LH+
Sbjct: 271 DIRYHIYNVDEDNPGFQ-EPRAIFYTAQIVSGLEHLHQ 307

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 27/187 (14%), Positives = 51/187 (27%), Gaps = 13/187 (6%)

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
                +   S+PP +    + P+   PP + N          ++   +        P A+
Sbjct: 293 LKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIAS 352

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
               +   + +      S EP      +          S  P  +S         S    
Sbjct: 353 VGTLAKQKAPVGNDASFSKEP---VISASNFLGRSSGSSRRPAVSS---------SRDVM 400

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           P   + P+        P      S P  S+   S  P     S  ++       S+ +  
Sbjct: 401 PIDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPK-HSSSARHSSNVKNYESALKGI 459

Query: 258 SSPSNNG 264
              + +G
Sbjct: 460 EGLNFDG 466

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G FG V++       +    K +K+ G   +   K E+ I++   HR+++ L     
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE 71

Query: 434 SDDRRLLIYDYV 445
           S +  ++I++++
Sbjct: 72  SMEELVMIFEFI 83

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 374 LLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVS 427
           +LG GG   V+     D    R+VA+K L+    +       F+ E +  + ++H  +V+
Sbjct: 19  ILGFGGMSEVHLAR--DLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVA 76

Query: 428 LVGYCISDDRRLLIY----DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +     ++     +     +YV   TL   +H EG   +     +++ A A + L + H+
Sbjct: 77  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP--MTPKRAIEVIADACQALNFSHQ 134

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 309 PSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHS--RSMFTYEELVKAT 366
           P    +         K +    +   G       +               +  + +    
Sbjct: 93  PCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKH 152

Query: 367 DGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH 421
           D   D       LG G FG V++      G   A K +       +   + E++ +S + 
Sbjct: 153 DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLR 212

Query: 422 HRHLVSLVGYCISDDRRLLIYDYV 445
           H  LV+L      D+  ++IY+++
Sbjct: 213 HPTLVNLHDAFEDDNEMVMIYEFM 236

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +G+G +G V            AIK     +++    +     K EV ++ ++HH ++  L
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR 467
                 +    L+ +      L   L+            
Sbjct: 94  YEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAM 132

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 14/120 (11%)

Query: 374 LLGEGGFGSVY---KGYLPDGREV-AIKQLK---IGGGQGEREF-KAEVEIISRIHHRHL 425
           +LG+GG+G V+   K    +  ++ A+K LK   I     +    KAE  I+  + H  +
Sbjct: 24  VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
           V L+ Y      +L LI +Y+    L+  L  EG  + D         A  +  L +LH+
Sbjct: 84  VDLI-YAFQTGGKLYLILEYLSGGELFMQLEREGIFMED---TACFYLAEISMALGHLHQ 139

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLK---IGGGQGEREFKAEVEIISRIH--- 421
           F+   ++G GGFG VY     D G+  A+K L    I   QGE     E  ++S +    
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250

Query: 422 HRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLA 479
              +V +  Y      +L  I D +    L++HL   G         ++  AA    GL 
Sbjct: 251 CPFIVCMS-YAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEA---DMRFYAAEIILGLE 306

Query: 480 YLHE 483
           ++H 
Sbjct: 307 HMHN 310

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 374 LLGEGGFGSVY---KGYLPDGREV-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLV 426
           +LG+G FG V+   K    D R++ A+K LK   +         K E +I+  ++H  +V
Sbjct: 31  VLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRD-RVRTKMERDILVEVNHPFIV 89

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
            L  Y    + +L LI D++    L+  L  E     +    VK   A  A  L +LH 
Sbjct: 90  KLH-YAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEE---DVKFYLAELALALDHLHS 144

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 21/174 (12%), Positives = 36/174 (20%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P     KSS      ++             N     +             A     S   
Sbjct: 5   PRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQR 64

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
            +  A  P   +                +            +   A     S        
Sbjct: 65  ATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSD 124

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
              ++     RS            P S+    +  A ++  P+ V  PPT +  
Sbjct: 125 TGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSG 178

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 20/180 (11%), Positives = 41/180 (22%), Gaps = 6/180 (3%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P  +   S+   + S   S   +S      N         P  S+       P +++  
Sbjct: 4   IPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQ 63

Query: 112 TRSPP--PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             +     P       +P    +         S              +   +S   V   
Sbjct: 64  RATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYS 123

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
           +     ++   ++                P  T    A+        +    PP  S+  
Sbjct: 124 DTGINNANELSRSGNVD----NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGH 179

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 21/137 (15%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-F 410
            +SM  YE L            +GEG +G V K      GR VAIK+        + +  
Sbjct: 21  FQSMEKYENLGL----------VGEGSYGMVMKCRNKDTGRIVAIKKFLES---DDDKMV 67

Query: 411 KA----EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWAT 466
           K     E++++ ++ H +LV+L+  C    R  L++++V +  +   L       LD+  
Sbjct: 68  KKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHT-ILDDLELFPNG-LDYQV 125

Query: 467 RVKIAAGAARGLAYLHE 483
             K       G+ + H 
Sbjct: 126 VQKYLFQIINGIGFCHS 142

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-- 409
                 YE+L            LGEG F +VYK       + VAIK++K+G     ++  
Sbjct: 6   KSRAKRYEKLDF----------LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGI 55

Query: 410 -FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP 446
              A  E++++  + H +++ L+          L++D++ 
Sbjct: 56  NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME 95

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG V K       +E A+K +                EVE++ ++ H +++ L  
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST-ILREVELLKKLDHPNIMKLFE 88

Query: 431 YCISDDRRLLIYDYV 445
                    ++ +  
Sbjct: 89  ILEDSSSFYIVGELY 103

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVS 427
           F  +++LG G  G++    + D R+VA+K++     +       EV+++     H +++ 
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILP---ECFSFADREVQLLRESDEHPNVIR 82

Query: 428 LVGYCISDDRRLLIYDYVPNNTL--YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                     + +  +     TL  Y          L+    + +      GLA+LH 
Sbjct: 83  YFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLE---PITLLQQTTSGLAHLHS 136

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G + A K     + K       RE  + EV I+  I H ++++
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 79  LHEVYENKTDVILILELV 96

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G E A K     Q +       RE  + EV I+ ++ H ++++
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 80  LHDVYENRTDVVLILELV 97

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           +G+G F  V     +  GREVAIK +   ++     ++ F+ EV I+  ++H ++V L  
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKL-- 79

Query: 431 Y-CISDDRRL-LIYDYVPNNTLYFHLHGEGR 459
           +  I  ++ L LI +Y     ++ +L   GR
Sbjct: 80  FEVIETEKTLYLIMEYASGGEVFDYLVAHGR 110

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +G+G F  V +      G++ A+K     +     G    + K E  I   + H H+V L
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVEL 91

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR----GLAYLHE 483
           +    SD    ++++++    L F +         ++  V  A+   R     L Y H+
Sbjct: 92  LETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAV--ASHYMRQILEALRYCHD 148

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G E A K     Q +       RE  + EV I+ ++ H ++++
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 80  LHDVYENRTDVVLILELV 97

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 367 DGFADQNLLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIIS 418
           D F     LG G FG V     K     G   A+K L     +   Q E     E  I+ 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKE---SGNHYAMKILDKQKVVKLKQIEH-TLNEKRILQ 96

Query: 419 RIHHRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAAR 476
            ++   LV L  +   D+  L ++ +YV    ++ HL   GR     A   +  AA    
Sbjct: 97  AVNFPFLVKLE-FSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHA---RFYAAQIVL 152

Query: 477 GLAYLHE 483
              YLH 
Sbjct: 153 TFEYLHS 159

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
            LG G FG V+    +    +GR  A+K LK    +   Q E     E  ++S + H  +
Sbjct: 13  TLGTGSFGRVHLIRSRH---NGRYYAMKVLKKEIVVRLKQVEHT-NDERLMLSIVTHPFI 68

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
           + +      D +++ +I DY+    L+  L    R         K  AA     L YLH 
Sbjct: 69  IRMW-GTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNP---VAKFYAAEVCLALEYLHS 124

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G+E A K     +L        RE  + EV I+  I H ++++
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 73  LHDIFENKTDVVLILELV 90

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAI 396
           +     GG    R     E ++ A+  F+D       LG+G F  V +      G E A 
Sbjct: 3   HMASMTGGQQMGRGS---EFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAA 59

Query: 397 KQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
           K +   K+     ++  + E  I  ++ H ++V L      +    L++D V
Sbjct: 60  KIINTKKLSARDFQK-LEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 110

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRI 420
           + F     +GEG +G VYK      G  VA+K++++     E E     A  E+ ++  +
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD---TETEGVPSTAIREISLLKEL 59

Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
           +H ++V L+    ++++  L+++++  + L   +       +             +GLA+
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118

Query: 481 LHE 483
            H 
Sbjct: 119 CHS 121

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 333 GSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDG 391
           G+                  + S+  Y  + K          LGEG +G VYK       
Sbjct: 10  GTLEAQTQGPGSMSVSAAPSATSIDRYRRITK----------LGEGTYGEVYKAIDTVTN 59

Query: 392 REVAIKQLKIGGGQGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP 446
             VAIK++++     E E     A  EV ++  + HR+++ L      + R  LI++Y  
Sbjct: 60  ETVAIKRIRLE---HEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE 116

Query: 447 NNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHE 483
           N+     L    +  P +              G+ + H 
Sbjct: 117 ND-----LKKYMDKNPDVSMRVIKSFLYQLINGVNFCHS 150

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL--KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           LG+G F  V +   +  G+E A   +  K    +  ++ + E  I   + H ++V L   
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 432 CISDDRRLLIYDYV 445
              +    LI+D V
Sbjct: 79  ISEEGHHYLIFDLV 92

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 8/141 (5%)

Query: 351 GHSRSMFTYEELVKATDG---FADQNLLGEG--GFGSVYKGY-LPDGREVAIKQLKIGGG 404
            H      ++ +         +    ++G+G     +V      P G  V ++++ +   
Sbjct: 6   HHHMENLYFQGMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC 65

Query: 405 QGER--EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVL 462
             E     + E+ +    +H ++V      I+D+   ++  ++   +    +       +
Sbjct: 66  SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGM 125

Query: 463 DWATRVKIAAGAARGLAYLHE 483
           +      I  G  + L Y+H 
Sbjct: 126 NELAIAYILQGVLKALDYIHH 146

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
           +       L     M  Y++L K          +GEG +G VYK     GR VA+K++++
Sbjct: 6   HHSSGRENLYFQGLMEKYQKLEK----------VGEGTYGVVYKAKDSQGRIVALKRIRL 55

Query: 402 GGGQGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
                E E     A  E+ ++  +HH ++VSL+    S+    L+++++
Sbjct: 56  D---AEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFM 101

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 374 LLGEGGFGSVY---KGYLPDGREV-AIKQLK---IGGGQGEREF-KAEVEIISRI-HHRH 424
           +LG G +G V+   K    D  ++ A+K LK   I       E  + E +++  I     
Sbjct: 61  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 120

Query: 425 LVSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLH 482
           LV+L  Y    + +L LI DY+    L+ HL    R        V+I        L +LH
Sbjct: 121 LVTLH-YAFQTETKLHLILDYINGGELFTHLSQRERFTEH---EVQIYVGEIVLALEHLH 176

Query: 483 E 483
           +
Sbjct: 177 K 177

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGERE-----FKAEVEIISRIHHRHL 425
           LG G  G V   +     ++VAI+ +   K   G           + E+EI+ +++H  +
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 202

Query: 426 VSLVGYCISDDRRL-LIYDYVP 446
           + +  +   D     ++ + + 
Sbjct: 203 IKIKNFF--DAEDYYIVLELME 222

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
           LG G FG V+       G E  IK +     Q   E  +AE+E++  + H +++ +    
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF 89

Query: 433 ISDDRRLLIYDYV 445
                  ++ +  
Sbjct: 90  EDYHNMYIVMETC 102

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 374 LLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVS 427
             G       ++    D    R+VA+  +   G   +   +E  +    +SRI    +  
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++    +    L++ +++   +L         P       ++     A      H 
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSP----VGAIRAMQSLAAAADAAHR 147

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +LGEG    V     L   +E A+K ++   G        EVE++ +   HR+++ L+ +
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEF 79

Query: 432 CISDDRRLLIYDYV 445
              +DR  L+++ +
Sbjct: 80  FEEEDRFYLVFEKM 93

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 24/124 (19%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LLGEG +G V +          A+K LK         GE   K E++++ R+ H++++ L
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

Query: 429 --VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAAR--------GL 478
             V Y     +  ++ +Y              + +LD     +     A         GL
Sbjct: 72  VDVLYNEEKQKMYMVMEYCV---------CGMQEMLDSVPEKRFPVCQAHGYFCQLIDGL 122

Query: 479 AYLH 482
            YLH
Sbjct: 123 EYLH 126

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 8/110 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            S P       +  A++   +S  P V          P+     N      + P      
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK----- 445

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAV 190
                   P PP     P K +  +  P  P P   +   + +PP  +  
Sbjct: 446 ---VTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 29/114 (25%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             +P +     +      +   +    ++                 T    P +      
Sbjct: 377 SDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG 436

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
                +        P+PP  P A + P       L P P +     + +PP+  
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.9 bits (104), Expect = 4e-05
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 1/113 (0%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
             +P +            +N  T      ++  P +  P  P     +   P+   S   
Sbjct: 377 SDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG 436

Query: 150 PPPPSSVEPPKRSPPSVPPQ-NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
                +V    +  P+ P +   P  P+    K   PAP+A      P PPT+
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 15/96 (15%), Positives = 20/96 (20%), Gaps = 4/96 (4%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +T   N  P                  N+       +       P V  + P PP   + 
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVN--VPKVTKEKPTPPVKPTA 459

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           P    P      P    P        P  P      
Sbjct: 460 PT--KPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 13/86 (15%), Positives = 22/86 (25%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           ++     +        P          +     +    +   P       +PP  P A +
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPT 461

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPP 123
            PT     P+   P         TPP
Sbjct: 462 KPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 14/104 (13%), Positives = 24/104 (23%), Gaps = 4/104 (3%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
                 +    S+            P          +   +++      N P        
Sbjct: 393 GPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK--VTKEK 450

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            TPP    P+ P+ P   +  P  P    P        P +   
Sbjct: 451 PTPPV--KPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G F  V +      G E A K +   K+     ++  + E  I  ++ H ++V L  
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQHPNIVRLHD 72

Query: 431 YCISDDRRLLIYDYV 445
               +    L++D V
Sbjct: 73  SIQEESFHYLVFDLV 87

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           +G G +G V            A K++     +    FK E+EI+  + H +++ L     
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE 76

Query: 434 SDDRRLLIYDYV 445
            +    L+ +  
Sbjct: 77  DNTDIYLVMELC 88

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 16/120 (13%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLKIGGGQGEREF---KAEVEIISRIHHRHLV 426
           LLG+G FG V     K     GR  A+K LK      + E      E  ++    H  L 
Sbjct: 155 LLGKGTFGKVILVKEKA---TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLT 211

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHED 484
           +L  Y      RL  + +Y     L+FHL  E     D   R +   A     L YLH +
Sbjct: 212 ALK-YSFQTHDRLCFVMEYANGGELFFHLSRERVFSED---RARFYGAEIVSALDYLHSE 267

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREF-KAEVEIISRIHHRH 424
           D F   + LG G  G V+K  + P G  +A K + +      R     E++++   +  +
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGR---PVLDWATRVKIAAGAARGLAYL 481
           +V   G   SD    +  +++   +L   L   GR    +L      K++    +GL YL
Sbjct: 93  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQIL-----GKVSIAVIKGLTYL 147

Query: 482 HEDCK 486
            E  K
Sbjct: 148 REKHK 152

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGERE-----FKAEVEIISRIHHRHL 425
           LG G  G V   +     ++VAIK +   K   G           + E+EI+ +++H  +
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 426 VSLVGYCISDDRRLLIYDYVP 446
           + +  +    +   ++ + + 
Sbjct: 78  IKIKNF-FDAEDYYIVLELME 97

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRIH 421
           + +     +GEG +G VYK     G   A+K++++     E E        E+ I+  + 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLE---KEDEGIPSTTIREISILKELK 58

Query: 422 HRHLVSLVGYCISDDRRLLIYDYV 445
           H ++V L     +  R +L+++++
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHL 82

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKI--GGGQGEREFKAEVEIISRI-HHRHLVSLVG 430
           LG G F  V +      G+E A K LK    G     E   E+ ++        +++L  
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 431 YCISDDRRLLIYDYV 445
              +    +LI +Y 
Sbjct: 97  VYENTSEIILILEYA 111

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G FG V     K      +  A+K L     +   +    F+ E +++     + +
Sbjct: 81  VIGRGAFGEVAVVKLKN---ADKVFAMKILNKWEMLKRAETAC-FREERDVLVNGDSKWI 136

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLH-GEGRPVLDWATRVKI-AAGAARGLAYLH 482
            +L  Y   DD  L L+ DY     L   L   E R   + A   +   A     +  +H
Sbjct: 137 TTLH-YAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMA---RFYLAEMVIAIDSVH 192

Query: 483 E 483
           +
Sbjct: 193 Q 193

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 13/144 (9%), Positives = 23/144 (15%), Gaps = 34/144 (23%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            L  G    V+    +    + A+K                       +R+         
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEAR 128

Query: 430 GYC--------------------------ISDDRRLLIYDYVPNNTLY----FHLHGEGR 459
                                         +    LL+      +              R
Sbjct: 129 DRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFR 188

Query: 460 PVLDWATRVKIAAGAARGLAYLHE 483
                     + A   R  A L  
Sbjct: 189 GDEGILALHILTAQLIRLAANLQS 212

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 374 LLGEGGFGSV----YKGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           LLG+G FG V     K     GR  A+K L+    I   +       E  ++    H  L
Sbjct: 12  LLGKGTFGKVILVREKA---TGRYYAMKILRKEVIIAKDEVAHT-VTESRVLQNTRHPFL 67

Query: 426 VSLVGYCI-SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
            +L  Y   + DR   + +Y     L+FHL  E     +   R +   A     L YLH 
Sbjct: 68  TALK-YAFQTHDRLCFVMEYANGGELFFHLSRERVFTEE---RARFYGAEIVSALEYLHS 123

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 327 SSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQ----NLLGEGGFGS 382
           S   L         ++S       G +  +  Y       D  +D     + LG G    
Sbjct: 9   SGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSI 68

Query: 383 VYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI 441
           VY+       +  A+K LK      ++  + E+ ++ R+ H +++ L     +     L+
Sbjct: 69  VYRCKQKGTQKPYALKVLKKT--VDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126

Query: 442 YDYV 445
            + V
Sbjct: 127 LELV 130

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 32/153 (20%), Positives = 39/153 (25%), Gaps = 2/153 (1%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           VS   +  PP          +     P          PA  P   +P   + P      P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           S    +P         +   T S     +  PP     PP       PP    P     P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
           P     P    P    P   PPP    PP    
Sbjct: 198 PMGP--PMGIPPGRGTPMGMPPPGMRPPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 24/149 (16%), Positives = 35/149 (23%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                         ++  P             +    P     P      + P       
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           S    +     +   A+   T+S   +P    P    PPPP+                  
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
               P   PP    P   PP  + PPPP 
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 25/149 (16%), Positives = 39/149 (26%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           VS      PP     +  P + +        ++             P+  A     +  P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
                 P       ++     +  +              PP     PPP  + PP    P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 165 SVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
            + P    PP   +P    PP     PP 
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 24/144 (16%), Positives = 34/144 (23%)

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
                               A  P           +  P    P  ++ P      P   
Sbjct: 81  TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
              P    +  +   A +   +  P+  PP       P  R  P      PPP       
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200

Query: 181 KNSPPAPIAVPPSNVPPPPTQTPP 204
                 P    P  +PPP  + PP
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRPPP 224

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKA-----EVEIISRIHHRHL 425
           LG G FG V+        +EV +K +   K+       + K      E+ I+SR+ H ++
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 426 VSL 428
           + +
Sbjct: 92  IKV 94

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 15/144 (10%), Positives = 32/144 (22%), Gaps = 3/144 (2%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           S   P     +          S   + S   PS  PP                 P     
Sbjct: 12  SGLVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPI-TTD 70

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
                  ++    K++    P +        +          A   + +    ++     
Sbjct: 71  ATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIW- 129

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRL 230
            S + P    ++ +   P    + 
Sbjct: 130 -SDVVPFVRRTTDSDFDPSRMYKF 152

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A       +  S+     S  P+  PP   +   +       V+   T +   +  A+  
Sbjct: 22  ASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSATVTAAGG 81

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               +        ++  PA    +++   +  A      +      N         S   
Sbjct: 82  AKKKA--------TTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVV 133

Query: 123 PPNSPPSPPSDPPAN 137
           P     +     P+ 
Sbjct: 134 PFVRRTTDSDFDPSR 148

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 14/140 (10%), Positives = 29/140 (20%), Gaps = 6/140 (4%)

Query: 43  PPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTIS 102
            P      +         +  +S+S      P+  PP                +   T +
Sbjct: 15  VPRGSHMASKRCRQCSGDSASSSTSS---LSPSELPPSKKAAGGQRVTAEVEVAPITTDA 71

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
               V+          + +P   +  +                        ++ +  K  
Sbjct: 72  TSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAE---ALAALNAKKSEKEI 128

Query: 163 PPSVPPQNPPPPPSSSPPKN 182
              V P       S   P  
Sbjct: 129 WSDVVPFVRRTTDSDFDPSR 148

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 3/134 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT---SSPPPASNPPT 86
            P  +   S           ++S     P+  PP+  +            +P        
Sbjct: 15  VPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSA 74

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           +            T SP    S+    +              +  +   +     S+   
Sbjct: 75  TVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVVP 134

Query: 147 NLPPPPPSSVEPPK 160
            +     S  +P +
Sbjct: 135 FVRRTTDSDFDPSR 148

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 109 NPPTRSPPPPSSTPPPNSPPSP-PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +PP++     +         +P    P  +              P    E P R    VP
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAE-VP 68

Query: 168 PQNPPPPPSSSPPK 181
            + P PP  +    
Sbjct: 69  TKPPLPPARTQGTP 82

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 20/72 (27%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
            PP  +    +       +     P P         S       P   +  P+      +
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 89  PPPSPPASSPPT 100
            PP PPA +  T
Sbjct: 70  KPPLPPARTQGT 81

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           PP+      +    +    +P     P   P   V +       P   T  P+     P+
Sbjct: 11  PPSQDLKDGTQEEATKRQEAPVDP-RPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 133 DPPANSPPPSNPPSNL 148
            PP         P +L
Sbjct: 70  KPPLPPARTQGTPVHL 85

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G F  V     K     G+  A+K +     +  G+    F+ E +++     R +
Sbjct: 68  VIGRGAFSEVAVVKMKQ---TGQVYAMKIMNKWDMLKRGEVSC-FREERDVLVNGDRRWI 123

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
             L  +   D+  L L+ +Y     L   L   G  +       +   A     +  +H 
Sbjct: 124 TQLH-FAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPA--EMARFYLAEIVMAIDSVHR 180

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 349 GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
           G   S +   YE + +          +G G +G+VYK      G  VA+K +++      
Sbjct: 1   GPLGSMATSRYEPVAE----------IGVGAYGTVYKARDPHSGHFVALKSVRVP---NG 47

Query: 408 REFKAEV------EI-----ISRIHHRHLVSL----VGYCISDDRRL-LIYDYVPNNTLY 451
                 +      E+     +    H ++V L           + ++ L++++V  + L 
Sbjct: 48  GGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD-LR 106

Query: 452 FHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +L     P L   T   +     RGL +LH 
Sbjct: 107 TYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA 138

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG G FG V  G     G +VA+K L   KI       + K E++ +    H H++ L 
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKL- 76

Query: 430 GY-CISDDRRL-LIYDYVPNNTLYFHLHGEGR 459
            Y  IS      ++ +YV    L+ ++   GR
Sbjct: 77  -YQVISTPTDFFMVMEYVSGGELFDYICKHGR 107

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 32/132 (24%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKA-EVEIISRIHHRHLV 426
           + D  ++G G FG VY+  L   G  VAIK++       ++ FK  E++I+ ++ H ++V
Sbjct: 56  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ-----DKRFKNRELQIMRKLDHCNIV 110

Query: 427 SLVGYCISDDRRL------LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAA----- 475
            L  +  S   +       L+ DYVP  T+Y         V    +R K           
Sbjct: 111 RLRYFFYSSGEKKDEVYLNLVLDYVP-ETVY--------RVARHYSRAKQTLPVIYVKLY 161

Query: 476 -----RGLAYLH 482
                R LAY+H
Sbjct: 162 MYQLFRSLAYIH 173

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 44.4 bits (103), Expect = 6e-05
 Identities = 31/164 (18%), Positives = 50/164 (30%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           +     G      +   P +++    S PP  S+   S      V+   TTS   + PA 
Sbjct: 176 IGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP 235

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           + P ++S  + SP  SS   AS   + + P           +   P      +     S 
Sbjct: 236 SAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASV 295

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
             P    P   +        P  P     P     ++    SP 
Sbjct: 296 LTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQ 339

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKAEVEIISR-IHHR 423
           +   D   +G G +GSV K  + P G+ +A+K+++    + E++    +++++ R     
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 424 HLVSLVGYCISDDRRLLIYDYVPN--NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           ++V   G    +    +  + +    +  Y +++     V+      KI     + L +L
Sbjct: 82  YIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL 141

Query: 482 HEDCK 486
            E+ K
Sbjct: 142 KENLK 146

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG G FG V  G     G +VA+K L   KI       + + E++ +    H H++ L 
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKL- 81

Query: 430 GY-CISDDRRL-LIYDYVPNNTLYFHLHGEGR 459
            Y  IS    + ++ +YV    L+ ++   GR
Sbjct: 82  -YQVISTPSDIFMVMEYVSGGELFDYICKNGR 112

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 21/134 (15%)

Query: 356 MFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKA- 412
           M  YE++ K          +GEG +G V+K      G+ VAIK+        +    K  
Sbjct: 2   MEKYEKIGK----------IGEGSYGVVFKCRNRDTGQIVAIKKFLES---EDDPVIKKI 48

Query: 413 ---EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
              E+ ++ ++ H +LV+L+       R  L+++Y  +  +   L    R  +       
Sbjct: 49  ALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHT-VLHELDRYQRG-VPEHLVKS 106

Query: 470 IAAGAARGLAYLHE 483
           I     + + + H+
Sbjct: 107 ITWQTLQAVNFCHK 120

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G FG V     K      +  A+K L     I        F  E +I++  +   +
Sbjct: 76  VIGRGAFGEVQLVRHKS---TRKVYAMKLLSKFEMIKRSDSAF-FWEERDIMAFANSPWV 131

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
           V L  Y   DDR L ++ +Y+P   L   +         WA   +   A     L  +H 
Sbjct: 132 VQLF-YAFQDDRYLYMVMEYMPGGDLVNLMS-NYDVPEKWA---RFYTAEVVLALDAIHS 186

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 35/144 (24%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRI--------- 420
           +LG+    +  +      G    +      +       ++ K EV  +  +         
Sbjct: 80  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQA 139

Query: 421 --HHRHLVSLVGYCISDDR---RLLIYDYVPNNTLYFHL-----------------HGEG 458
             H R +           +   R+ + +        F L                 H   
Sbjct: 140 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 199

Query: 459 RPVLDWATRVKIAAGAARGLAYLH 482
              L    R+++     R LA LH
Sbjct: 200 HKSLVHHARLQLTLQVIRLLASLH 223

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 360 EELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEV 414
           ++L + +  F D       +G G +    +        E A+K +             E+
Sbjct: 11  QQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE----EI 66

Query: 415 EIISR-IHHRHLVSLVGYCISDDRRLLIYDYV 445
           EI+ R   H ++++L           ++ + +
Sbjct: 67  EILLRYGQHPNIITLKDVYDDGKYVYVVTELM 98

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRI 420
             +     +GEG +G+V+K         VA+K++++     + E     A  E+ ++  +
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLD---DDDEGVPSSALREICLLKEL 58

Query: 421 HHRHLVSLVGYCISDDRRLLIYDYV 445
            H+++V L     SD +  L++++ 
Sbjct: 59  KHKNIVRLHDVLHSDKKLTLVFEFC 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 65/226 (28%)

Query: 287 LVVWCLRRRKKEV------SGLNGVY------IMPSPLGSSSTTDSSYIKTQSSAPLIGS 334
            + W L  +++E+        L   Y      I       S  T   YI+ +    L   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRD--RLYND 122

Query: 335 GP--GSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLL---GEGGFGSVYKGYLP 389
                   V+  Q             Y +L +A         +   G  G G   K ++ 
Sbjct: 123 NQVFAKYNVSRLQ------------PYLKLRQALLELRPAKNVLIDGVLGSG---KTWV- 166

Query: 390 DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT 449
                A+             +K + ++  +I     ++ +  C S +  L +        
Sbjct: 167 -----ALDVC--------LSYKVQCKMDFKI---FWLN-LKNCNSPETVLEML-----QK 204

Query: 450 LYFHLHGEGRPVLDWATRVKIAAGAARG-LAYL-----HEDCKYLI 489
           L + +        D ++ +K+   + +  L  L     +E+C  L+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLV 249

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSL 428
            LGEG FG V         ++VA+K +    +         + E+  +  + H H++ L
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKL 74

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 30/112 (26%), Gaps = 2/112 (1%)

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSV 156
           + P    P        R              P P +D     PP   PP  +  P   S 
Sbjct: 1   AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 60

Query: 157 EPPK--RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
             P   RS  +  P+N      S  P      P      ++ PPP       
Sbjct: 61  ASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 112

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 19/98 (19%)

Query: 346 DPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG 404
           D         +  YE+L K          +G+G FG V+K      G++VA+K++ +   
Sbjct: 6   DSVECPFCDEVSKYEKLAK----------IGQGTFGEVFKARHRKTGQKVALKKVLM--- 52

Query: 405 QGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDR 437
           + E+E     A  E++I+  + H ++V+L+  C +   
Sbjct: 53  ENEKEGFPITALREIKILQLLKHENVVNLIEICRTKAS 90

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL------KIGGGQGEREFKAEVEIISRIHHRH 424
           LLG GGFGSVY G  + D   VAIK +        G          EV ++ ++    
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF 107

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 30/137 (21%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKAEVEIISR-IHHR 423
           D       LG G +G V K  ++P G+ +A+K+++      E++    +++I  R +   
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 424 HLVSLVG-------------YC-ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVK 469
             V+  G                 S D+    Y  V +         E   +L      K
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDK---FYKQVIDKGQTI---PE--DIL-----GK 113

Query: 470 IAAGAARGLAYLHEDCK 486
           IA    + L +LH    
Sbjct: 114 IAVSIVKALEHLHSKLS 130

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 20/97 (20%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE-----R 408
           S   +++L K          LG G + +VYKG     G  VA+K++K+   +G      R
Sbjct: 3   SSSQFKQLEK----------LGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIR 52

Query: 409 EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
               E+ ++  + H ++V L     ++++  L+++++
Sbjct: 53  ----EISLMKELKHENIVRLYDVIHTENKLTLVFEFM 85

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/145 (11%), Positives = 33/145 (22%), Gaps = 35/145 (24%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG+    +  +      G    +              K   E + R+     +      
Sbjct: 85  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQA 144

Query: 433 ISDDRRLLIYD--------------------YVPNNTLYFHL--------------HGEG 458
               R +  +D                    +V +    +                H   
Sbjct: 145 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 204

Query: 459 RPVLDWATRVKIAAGAARGLAYLHE 483
              L    R+++     R LA LH 
Sbjct: 205 HKSLVHHARLQLTLQVIRLLASLHH 229

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 29/148 (19%)

Query: 351 GHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG--YLPDGREVAIKQLKIGGGQGER 408
           G  R+   YE + +          +GEG +G V+K       GR VA+K++++   Q   
Sbjct: 5   GLCRADQQYECVAE----------IGEGAYGKVFKARDLKNGGRFVALKRVRV---QTGE 51

Query: 409 E---FKAEVEI-----ISRIHHRHLVSL----VGYCISDDRRL-LIYDYVPNNTLYFHLH 455
           E        E+     +    H ++V L           + +L L++++V  + L  +L 
Sbjct: 52  EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD-LTTYLD 110

Query: 456 GEGRPVLDWATRVKIAAGAARGLAYLHE 483
               P +   T   +     RGL +LH 
Sbjct: 111 KVPEPGVPTETIKDMMFQLLRGLDFLHS 138

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLV 426
            +G+G FG V            +  A+K +           R    E++I+  + H  LV
Sbjct: 22  AIGKGSFGKVCIVQKND---TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLV 78

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKI-AAGAARGLAYLHE 483
           +L  Y   D+  + ++ D +    L +HL        +    VK+        L YL  
Sbjct: 79  NLW-YSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEE---TVKLFICELVMALDYLQN 133

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 18/122 (14%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQL- 399
                P  +        Y+  VK          +G G FG             VA+K + 
Sbjct: 5   PVTTGPLDMPIMHDSDRYD-FVK---------DIGSGNFGVARLMRDKLTKELVAVKYIE 54

Query: 400 --KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGE 457
                    +R    E+     + H ++V      ++     +I +Y     LY  +   
Sbjct: 55  RGAAIDENVQR----EIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA 110

Query: 458 GR 459
           GR
Sbjct: 111 GR 112

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYC 432
           LGEG F    K       +  A+K +     + E   + E+  +     H ++V L    
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIIS---KRMEANTQKEITALKLCEGHPNIVKLHEVF 75

Query: 433 ISDDRRLLIYDYV 445
                  L+ + +
Sbjct: 76  HDQLHTFLVMELL 88

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL------KIGGGQGEREFKAEVEIISRIH----H 422
           LLG+GGFG+V+ G+ L D  +VAIK +                   EV ++ ++     H
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGH 97

Query: 423 RHLVSL 428
             ++ L
Sbjct: 98  PGVIRL 103

>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Length = 283

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 23/115 (20%), Positives = 32/115 (27%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
            S+    + P    P    PPP   PP       P   +   I+ P  ++          
Sbjct: 1   GSHMDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARK 60

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
            S+ P            A +         +PP      EP     PS  P N P 
Sbjct: 61  WSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPI 115

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
               ++   P   + P  +P  S PA      +   A++P  ++   A  P  +S
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           P+       PA        P   +  P  + P P +   P +  +  +D P
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 15/138 (10%), Positives = 29/138 (21%), Gaps = 2/138 (1%)

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
                   P+             P ++  +         P              +  PP 
Sbjct: 84  EVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPL 143

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
              +++P          +        Q+       +PP    P  +     N        
Sbjct: 144 EYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPP--QLPPQLENVILNKYYATQDQ 201

Query: 203 PPTPASPIAPRPSNSSPN 220
                S   P P++   N
Sbjct: 202 FNENNSGALPIPNHVVLN 219

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 35/144 (24%)

Query: 364 KATDGFADQ----NLLGEGGFGSVYKG-YLPDGREVAIK---------QLKIGGGQGERE 409
            +T GF +      +LG G    V +  + P  +E A+K                +    
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 410 FKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRV 468
              EV+I+ ++  H +++ L     ++    L++D +          GE   + D+ T  
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKK--------GE---LFDYLTEK 118

Query: 469 -----KIAAGAAR----GLAYLHE 483
                K      R     +  LH+
Sbjct: 119 VTLSEKETRKIMRALLEVICALHK 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.94
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.94
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.94
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.93
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.93
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.93
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.92
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.92
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.91
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.91
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.91
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.91
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.91
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.9
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.9
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.88
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.88
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.86
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.86
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.85
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.85
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.85
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.85
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.84
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.84
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.84
3uqc_A	286	Probable conserved transmembrane protein; structur	99.83
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.83
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.83
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.83
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.83
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.83
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.83
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.83
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.83
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.83
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.83
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.83
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.83
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.83
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.83
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.83
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.83
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.82
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.82
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.82
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.82
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.82
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.82
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.82
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.82
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.82
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.82
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.82
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.82
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.82
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.82
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.82
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.82
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.82
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.82
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.82
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.82
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.82
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.82
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.81
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.81
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.81
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.81
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.81
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.81
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.81
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.81
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.81
3niz_A	311	Rhodanese family protein; structural genomics, str	99.81
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.81
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.8
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.8
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.8
3bhy_A	283	Death-associated protein kinase 3; death associate	99.8
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.8
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.8
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.8
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.8
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.8
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.8
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.8
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.8
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.8
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.8
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.8
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.8
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.8
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.8
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.8
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.8
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.8
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.8
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.8
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.8
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.8
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.8
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.8
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.8
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.8
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.8
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.8
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.8
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.8
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.8
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.8
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.8
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.8
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.8
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.8
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.8
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.8
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.79
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.79
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.79
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.79
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.79
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.79
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.79
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.79
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.79
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.79
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.79
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.79
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.79
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.79
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.79
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.79
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.79
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.79
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.79
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.79
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.79
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.79
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.79
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.79
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.79
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.79
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.79
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.79
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.79
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.79
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.79
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.79
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.79
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.79
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.79
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.79
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.78
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.78
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.78
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.78
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.78
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.78
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.78
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.78
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.78
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.78
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.78
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.78
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.78
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.78
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.78
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.78
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.78
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.78
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.78
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.78
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.78
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.78
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.78
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.78
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.78
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.78
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.78
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.78
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.77
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.77
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.77
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.77
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.77
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.77
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.77
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.77
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.77
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.77
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.77
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.77
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.77
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.76
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.76
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.76
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.76
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.76
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.76
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.76
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.76
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.76
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.76
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.75
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.75
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.75
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.75
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.75
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.75
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.75
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.75
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.75
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.75
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.75
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.75
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.75
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.74
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.74
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.74
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.74
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.74
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.74
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.74
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.74
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.73
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.73
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.73
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.73
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.73
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.73
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.72
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.72
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.72
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.72
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.72
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.72
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.71
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.71
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.71
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.71
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.7
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.7
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.7
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.69
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.69
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.68
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.68
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.64
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.6
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.59
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.5
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.45
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.25
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.96
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.55
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.5
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.45
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.02
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.88
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.7
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.66
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.64
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.62
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.59
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.58
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.52
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	97.14
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	97.06
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.26
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.24
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.19
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.1
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	96.06
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	95.77
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	95.73
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	95.57
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.28
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	95.22
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.22
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	94.8
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.65
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	94.6
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	94.12
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	93.8
3mes_A	424	Choline kinase; malaria, structural genomics, stru	93.15
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	93.04
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	92.31
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.71
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	91.25
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	90.38
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	88.72
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	88.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.23
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	84.66
1zza_A	90	Stannin, AG8_1; helix, membrane protein; NMR {Homo	84.26
2l6w_A	39	Beta-type platelet-derived growth factor receptor;	84.15
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	80.44

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.94  E-value=1.3e-27  Score=237.69  Aligned_cols=125  Identities=27%  Similarity=0.481  Sum_probs=106.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.......++|.+|+++|++|+|+|||+|+|+|.+.+.+||
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            56788899999999999999863      367899999986655556789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC-----------CCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEG-----------RPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~-----------~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||||++|+|+++|+..+           ...|+|.++++|+.|||+||+|||      +|+|..||+
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NIL  160 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCL  160 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEE
Confidence            999999999999997532           346999999999999999999996      466666665

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.94  E-value=2.9e-27  Score=238.36  Aligned_cols=125  Identities=26%  Similarity=0.451  Sum_probs=108.1

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.++||+|+||+||+|++.      +++.||||+++.......++|++|+++|++|+|+|||+|+|+|.+.+.+||
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            45677889999999999999864      367899999986655556789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC-------------CCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEG-------------RPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~-------------~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||||.+|+|+++|++.+             ...|+|.++++|+.|||+||+|||      +|+|..||+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NIL  190 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCL  190 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEE
Confidence            999999999999997542             234899999999999999999986      566666665

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.94  E-value=8.8e-27  Score=232.71  Aligned_cols=125  Identities=30%  Similarity=0.391  Sum_probs=104.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      +++++.+.||+|+||+||+|++.      +++.||||+|+.... ...++|++|+++|++|+|+|||+|+|+|.+++.+|
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            34566789999999999999863      467899999975433 34568999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||||||.+|+|+++|+.++              +..|+|.++++|+.|||+||+|||      +|+|..||+
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NIL  177 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVL  177 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceE
Confidence            9999999999999997532              235899999999999999999996      466666665

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.93  E-value=3.4e-26  Score=231.57  Aligned_cols=126  Identities=18%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++++.||+|+||+||+|+. .+|+.||||+|+....  ...+.|++|+++|++|+|+|||+|+++|++++.+|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            6799999999999999999985 4689999999975432  334679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||+||+|+++|+.++...+++.+.+.|+.||++||+|||      +|+|..||++
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl  158 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFL  158 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEE
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEE
Confidence            999999999998766666899999999999999999995      6777777764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.93  E-value=9.6e-26  Score=227.96  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=109.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.......+.|.+|+++|++|+|+|||+|+++|++++.+|||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4588899999999999999986 468999999997665556677999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ++|+|++++.+.   .+++.+.+.|+.||++||+|||      +|+|..||++
T Consensus       154 ~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl  203 (346)
T 4fih_A          154 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILL  203 (346)
T ss_dssp             TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred             CCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEE
Confidence            999999999753   3899999999999999999995      5777777764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=222.38  Aligned_cols=122  Identities=28%  Similarity=0.491  Sum_probs=103.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||+||+|++.+  .||||+++....  ...++|.+|+++|++|+|+|||+|+|+|.+ +.+|||||
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE  111 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ  111 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence            4567888999999999999999743  699999975433  234679999999999999999999998864 67899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||+||+|+++|+..+ ..++|.++++|+.|||+||+|||      +|+|..||+
T Consensus       112 y~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NIL  164 (307)
T 3omv_A          112 WCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIF  164 (307)
T ss_dssp             CCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEE
T ss_pred             cCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEE
Confidence            999999999997643 34999999999999999999996      466666665

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.92  E-value=2e-25  Score=231.09  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=110.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +.|++.+.||+|+||.||+|+. .+|+.||||+|+.......+.|.+|+++|++|+|+|||+|+++|++++.+|||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            4688999999999999999986 468999999998766666678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +||+|++++...   .+++.++..|+.||++||+|||      +|+|..||+|
T Consensus       231 ~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl  280 (423)
T 4fie_A          231 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILL  280 (423)
T ss_dssp             TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEE
T ss_pred             CCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEE
Confidence            999999999754   3899999999999999999996      5777777764

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.92  E-value=2e-25  Score=222.41  Aligned_cols=124  Identities=26%  Similarity=0.291  Sum_probs=109.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||+||+|+. .+|+.||||+++..   .....+.|.+|+++|++|+|+|||+|+++|++++.+||||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5699999999999999999985 56899999999643   2234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||.||+|+++|.+.+  .+++.+.+.|+.||+.||+|||      +|+|+.||++
T Consensus       112 Ey~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl  165 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILL  165 (311)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEE
Confidence            9999999999997654  3899999999999999999996      5778777764

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.91  E-value=8.8e-25  Score=222.19  Aligned_cols=135  Identities=23%  Similarity=0.334  Sum_probs=111.4

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCC-Ccccce
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHH-RHLVSL  428 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~H-pNIv~l  428 (492)
                      ++.++++...++|++.++||+|+||+||+|++.+      ++.||||+++..... ..++|.+|+++|++|+| +|||+|
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3455666777889999999999999999998532      357999999765443 34679999999999965 899999


Q ss_pred             eeEEEeC-CeEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhh------cCCCC
Q 011175          429 VGYCISD-DRRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLH------EDCKY  487 (492)
Q Consensus       429 ~g~~~~~-~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~  487 (492)
                      +|+|.+. +.+|||||||.+|+|+++|++.+              +..|+|.++++|+.|||+||+|||      +|+|.
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~  213 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  213 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCc
Confidence            9999764 56899999999999999997532              345899999999999999999995      56777


Q ss_pred             ceee
Q 011175          488 LIFC  491 (492)
Q Consensus       488 ~ii~  491 (492)
                      .||+
T Consensus       214 ~NIL  217 (353)
T 4ase_A          214 RNIL  217 (353)
T ss_dssp             GGEE
T ss_pred             ccee
Confidence            6665

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.91  E-value=8.2e-25  Score=218.12  Aligned_cols=111  Identities=28%  Similarity=0.443  Sum_probs=94.2

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHH--HHHHHHHHhCCCCcccceeeEEEeCC----eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREF--KAEVEIISRIHHRHLVSLVGYCISDD----RRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f--~~Ei~il~~l~HpNIv~l~g~~~~~~----~~~l  440 (492)
                      ++|.+.++||+|+||+||+|++ +|+.||||+++..   ..++|  .+|+.++.+|+|+|||+|+|+|.+++    .+||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l   78 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence            3577889999999999999998 6899999999643   23334  44566667899999999999998764    5799


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||++|+|+++|++.   .++|.++++|+.|||+||+|||++
T Consensus        79 V~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~  119 (303)
T 3hmm_A           79 VSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHME  119 (303)
T ss_dssp             EEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999864   389999999999999999999764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.91  E-value=2.3e-24  Score=213.21  Aligned_cols=114  Identities=24%  Similarity=0.297  Sum_probs=97.1

Q ss_pred             CccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEEEE
Q 011175          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIY  442 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~lV~  442 (492)
                      ++.++||+|+||+||+|++ .+++.||||++....  ....+.|.+|+++|++|+|+|||+|+|+|++    .+.+||||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            4567899999999999986 458899999996432  2334679999999999999999999999875    34579999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |||.+|+|+++|++.+  .+++..++.|+.||++||+|||++.
T Consensus       109 Ey~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~  149 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRT  149 (290)
T ss_dssp             ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999997654  4899999999999999999998643

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.91  E-value=3e-24  Score=210.68  Aligned_cols=124  Identities=20%  Similarity=0.327  Sum_probs=103.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++|+|+|||++++++.+.+.+|||
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            36899999999999999999985 468999999996432   23345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||| +|+|+++|.+++  .+++.+.+.|+.||+.||+|||      +|+|+.||++
T Consensus        92 mEy~-~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl  145 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLL  145 (275)
T ss_dssp             EECC-CEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEE
T ss_pred             EeCC-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEE
Confidence            9999 789999997654  3899999999999999999995      5777777653

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.91  E-value=1.5e-24  Score=218.52  Aligned_cols=119  Identities=20%  Similarity=0.216  Sum_probs=104.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +.|.+.++||+|+||+||+|+. .+|+.||||+++...     .+.+|+++|++|+|+|||+|+++|.+++.+|||||||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            4577888999999999999985 468999999997532     2357999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +||+|+++|++.+  .|++.+.+.|+.||++||+|||      +|+|..||++
T Consensus       133 ~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl  183 (336)
T 4g3f_A          133 EGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLL  183 (336)
T ss_dssp             TTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEE
T ss_pred             CCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEE
Confidence            9999999997654  3899999999999999999996      5677776653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.90  E-value=5.5e-24  Score=211.70  Aligned_cols=127  Identities=20%  Similarity=0.320  Sum_probs=103.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCC-------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDD-------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-------  436 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++..... ..+.|.+|+++|++|+|+|||+|+++|.+.+       
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            35688999999999999999985 46899999999765433 3457999999999999999999999987644       


Q ss_pred             -----eEEEEEecCCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          437 -----RRLLIYDYVPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       437 -----~~~lV~Ey~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                           .+|||||||.+|+|.++|+++.. ...++...++|+.||++||+|||      +|+|+.||++
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl  151 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFF  151 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEE
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEE
Confidence                 36899999999999999986543 23567778899999999999985      5777777653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.90  E-value=1.2e-24  Score=216.58  Aligned_cols=124  Identities=24%  Similarity=0.260  Sum_probs=101.5

Q ss_pred             cCCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||+||+|+.    ..++.||||+++...  ..+...|.+|+++|++|+|+|||+|+++|.+++.+||
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4689999999999999999974    246789999997432  2234578999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||||.||+|+++|.+.+  .+++.+.+.|+.||++||+|||      +|+|+.||++
T Consensus       104 vmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl  159 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILL  159 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEE
T ss_pred             EEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEE
Confidence            999999999999998654  4899999999999999999995      5777777653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.88  E-value=8.5e-23  Score=220.59  Aligned_cols=126  Identities=22%  Similarity=0.331  Sum_probs=110.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|++++.||+|+||.||+|+. .+|+.||||+|+.....+.+.+++|+++|++|+|+|||+|+++|.+.+.+||||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            36799999999999999999985 46899999999865555567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |.||+|+++|.++. ..|++.+.+.|+.||++||+|||      +|+|..+|+|
T Consensus       236 ~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill  288 (573)
T 3uto_A          236 MSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMF  288 (573)
T ss_dssp             CCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEE
T ss_pred             cCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccc
Confidence            99999999996543 35899999999999999999996      5667766653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=209.71  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe------CCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS------DDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~------~~~  437 (492)
                      ++|+++++||+|+||+||+|+. .+|+.||||+|+....  ...+.+++|+++|++|+|+|||+|++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5689999999999999999985 4699999999975432  234578999999999999999999999864      357


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      +|||||||. |+|+++|..++  .+++.+...|+.||++||+|||      +|+|+.||++
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~--~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~  191 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ--PLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLV  191 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEE
T ss_pred             EEEEEeCCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCcccccc
Confidence            899999995 78999997654  4999999999999999999995      5777777653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.86  E-value=6.3e-22  Score=197.99  Aligned_cols=137  Identities=47%  Similarity=0.837  Sum_probs=117.6

Q ss_pred             ccccHHHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEE
Q 011175          355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCI  433 (492)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~  433 (492)
                      ..|+++++....++|.+.++||+|+||.||+|++.+|+.||||+++..... ....|.+|+++|++++|+||++++++|.
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   97 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM   97 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence            357889999999999999999999999999999888999999999754322 3347999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 011175          434 SDDRRLLIYDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHEDCKYLIFC  491 (492)
Q Consensus       434 ~~~~~~lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~~~k~~ii~  491 (492)
                      +.+..+||||||.+|+|.++++...  ...++|..++.|+.||++||+|||+++...|+|
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH  157 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIH  157 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEEC
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Confidence            9999999999999999999998643  234899999999999999999999875433443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.86  E-value=1.1e-21  Score=200.15  Aligned_cols=122  Identities=18%  Similarity=0.272  Sum_probs=105.6

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~  438 (492)
                      ...+.|++.++||+|+||+||+|+.+    .++.||||++...  ....++.+|+++|+++ +|+|||+|+++|.+.+.+
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            34678999999999999999999742    4678999998643  3345789999999998 699999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||||||++|+|+++++     .+++.+...|+.||++||+|||      +|+|+.||++
T Consensus        96 ~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl  150 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLY  150 (361)
T ss_dssp             EEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             EEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEE
Confidence            99999999999999983     2889999999999999999995      6778877763

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.85  E-value=5e-22  Score=198.54  Aligned_cols=124  Identities=44%  Similarity=0.766  Sum_probs=110.2

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      .++....++|...++||+|+||.||+|++.+|+.||||++........++|.+|+++|++++|+||++++|+|.+.+..+
T Consensus        32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            34445668899999999999999999998889999999998766666778999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||.+|+|.+++.+..  ...++|.++++|+.||++||+|||+
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  157 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT  157 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999986543  2348999999999999999999975

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.85  E-value=8.1e-21  Score=190.27  Aligned_cols=125  Identities=21%  Similarity=0.275  Sum_probs=109.9

Q ss_pred             cccHHHHHHHhcC----------CCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc
Q 011175          356 MFTYEELVKATDG----------FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH  424 (492)
Q Consensus       356 ~~~~~~l~~~~~~----------~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN  424 (492)
                      .+++++++.+++.          |...+.||+|+||.||+|+.. +|+.||||+++.......+.|.+|+++|++++|+|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            4677887776654          566778999999999999865 69999999998666666678999999999999999


Q ss_pred             ccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       425 Iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |++++++|...+..||||||+.+|+|.+++...   .+++.+++.|+.||++||+|||+
T Consensus       104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~  159 (321)
T 2c30_A          104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHA  159 (321)
T ss_dssp             BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998643   38999999999999999999975

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.85  E-value=6e-21  Score=189.62  Aligned_cols=124  Identities=26%  Similarity=0.416  Sum_probs=108.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|.+.++||+|+||.||+|++ .+++.||||++........+.|.+|+++|++|+|+||++++++|.+++..+||||||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            5688899999999999999986 458899999987655556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+|+|.++++... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        90 ~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil  140 (310)
T 3s95_A           90 KGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCL  140 (310)
T ss_dssp             TTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE
T ss_pred             CCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEE
Confidence            9999999998643 348999999999999999999975      45555444

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.85  E-value=2.8e-21  Score=209.46  Aligned_cols=125  Identities=26%  Similarity=0.334  Sum_probs=103.8

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHH---HHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGERE---FKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~---f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+|+...   ......   .++++.+|+.++|+|||+|+++|.+.+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            46799999999999999999985 468999999996321   122222   34456777888999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||||||.||+|+++|.+.+  .|++.....|+.||+.||+|||      +|+|+.||++
T Consensus       268 ylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILl  325 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILL  325 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEE
T ss_pred             EEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEE
Confidence            99999999999999998654  3899999999999999999996      5777777663

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.84  E-value=1.2e-20  Score=186.80  Aligned_cols=123  Identities=18%  Similarity=0.315  Sum_probs=108.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++.......+.|.+|+.+|++++|+||++++++|.+.+..||||||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            35789999999999999999985 56899999999766555667899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+|+|.+++.+.   .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        99 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil  148 (297)
T 3fxz_A           99 LAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL  148 (297)
T ss_dssp             CTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEE
Confidence            9999999999764   38999999999999999999975      45554443

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.84  E-value=3.3e-21  Score=186.78  Aligned_cols=118  Identities=29%  Similarity=0.452  Sum_probs=104.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|++ +|+.||||+++....  ...++|.+|+++|++++|+||++++|+|.+.  +..+|||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            5688899999999999999998 588999999975432  2345799999999999999999999999887  7789999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||+.+|+|.++++......+++.++++|+.||++||+|||+..
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  131 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE  131 (271)
T ss_dssp             ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999998766556999999999999999999999754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.84  E-value=7.4e-21  Score=202.11  Aligned_cols=127  Identities=23%  Similarity=0.348  Sum_probs=110.4

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ...++|.+.++||+|+||.||+|++.+ ++.||||+++... ...++|.+|+++|++|+|+|||+++|+|.+.+.+||||
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~  295 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT  295 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence            345678889999999999999999754 7899999997543 34678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.++|+...+..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       296 E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl  350 (495)
T 1opk_A          296 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCL  350 (495)
T ss_dssp             ECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEE
Confidence            99999999999987666669999999999999999999975      55555554

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.83  E-value=1.5e-20  Score=185.38  Aligned_cols=121  Identities=11%  Similarity=0.000  Sum_probs=103.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|++. +|+.||||+++.....   ..++|.+|+++|++++|+||+++++++.+.+..||||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            56888999999999999999964 4889999999755432   2367999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.+++.++    ....+.++|+.||++||+|||+      |+|..+|+
T Consensus       111 e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIl  161 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVR  161 (286)
T ss_dssp             ECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE
T ss_pred             EecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEE
Confidence            999999999998532    3556788999999999999975      55665554

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.83  E-value=8e-21  Score=194.57  Aligned_cols=124  Identities=26%  Similarity=0.429  Sum_probs=105.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.++||+|+||.||+|++.    +++.||||+++.... ...++|.+|+++|++|+|+||++++|+|.+.+..|||
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            56888999999999999999864    467899999976533 3346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|.++|+..+ ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       125 ~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  179 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNIL  179 (373)
T ss_dssp             EECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEE
Confidence            99999999999997643 358999999999999999999975      45554444

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.83  E-value=7.9e-21  Score=191.25  Aligned_cols=125  Identities=22%  Similarity=0.283  Sum_probs=107.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ..++|.+.+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|+||++++++|.+.+..|||
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            356799999999999999999986 578999999996542  23346789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++...++  +++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        93 ~e~~~~~~L~~~l~~~~~--l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIl  146 (328)
T 3fe3_A           93 MEYASGGEVFDYLVAHGR--MKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLL  146 (328)
T ss_dssp             ECCCTTCBHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EECCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEE
Confidence            999999999999976543  8999999999999999999975      45555544

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.83  E-value=1.2e-20  Score=197.94  Aligned_cols=123  Identities=24%  Similarity=0.412  Sum_probs=107.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCC-eEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-~~~lV~Ey  444 (492)
                      .++|++.++||+|+||.||+|.+ +|+.||||+++...  ..++|.+|+++|++|+|+|||+++|+|.+.+ ..||||||
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence            46688889999999999999998 57899999997543  4578999999999999999999999998766 78999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+|+|.++|+..++..+++..+++|+.||++||+|||+      |+|..+|+
T Consensus       269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil  321 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVL  321 (450)
T ss_dssp             CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEE
Confidence            999999999987665568999999999999999999975      55555554

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.83  E-value=1.3e-20  Score=192.75  Aligned_cols=126  Identities=25%  Similarity=0.376  Sum_probs=105.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.+.||+|+||.||+|++.        ++..||||+++..... ..++|.+|+++|++| +|+|||+++|+|.+.
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            367888999999999999999852        3457999999755332 346799999999999 899999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCC--------------CCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGR--------------PVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +.+|||||||.+|+|.++|...+.              ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  235 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL  235 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEE
Confidence            999999999999999999976431              348899999999999999999975      55555554

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.83  E-value=3.8e-20  Score=183.29  Aligned_cols=128  Identities=40%  Similarity=0.755  Sum_probs=112.0

Q ss_pred             ccccHHHHHHHhcCCCcc------ceeccCCceeEEEEEcCCCCEEEEEEcccCC----CcchHHHHHHHHHHHhCCCCc
Q 011175          355 SMFTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRH  424 (492)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~------~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpN  424 (492)
                      ..|+++++.+.+++|...      ++||+|+||.||+|++ +++.||||++....    ....+.|.+|+++|++|+|+|
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            458899999999988776      8999999999999998 78899999986432    223467999999999999999


Q ss_pred             ccceeeEEEeCCeEEEEEecCCCCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGE-GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       425 Iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~-~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |++++++|.+.+..+|||||+.+|+|.+++... ....++|..+++|+.||++||+|||+
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  151 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE  151 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998643 23458999999999999999999976

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.83  E-value=5.4e-21  Score=190.64  Aligned_cols=121  Identities=28%  Similarity=0.440  Sum_probs=105.3

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ...++|.+.++||+|+||.||+|++ +|+.||||+++.....  ..++|.+|+++|++|+|+||++++++|.+.+..+||
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            3456788999999999999999987 6889999999754432  235799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          442 YDYVPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||.+|+|.++++.... ..+++..++.|+.||++||+|||+.+
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  157 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN  157 (309)
T ss_dssp             EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999976431 23899999999999999999999865

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=189.14  Aligned_cols=125  Identities=24%  Similarity=0.376  Sum_probs=105.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|.+.++||+|+||.||+|++.    ++..||||+++.... ...++|.+|+++|++|+|+||++++++|.+.+..||
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            356888999999999999999863    344699999975433 334679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|.++++... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       128 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl  183 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVL  183 (325)
T ss_dssp             EEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEE
Confidence            999999999999997543 358999999999999999999975      55555554

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.83  E-value=2.3e-20  Score=186.24  Aligned_cols=118  Identities=17%  Similarity=0.286  Sum_probs=99.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCC-------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~-------  436 (492)
                      .++|++.++||+|+||.||+|++. +|+.||||+++.... ...+.|.+|+++|++|+|+|||+++++|.+.+       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            466889999999999999999965 789999999975443 34568999999999999999999999997654       


Q ss_pred             --------------------------------------------------eEEEEEecCCCCCHHHHHhcCCC-CCCCHH
Q 011175          437 --------------------------------------------------RRLLIYDYVPNNTLYFHLHGEGR-PVLDWA  465 (492)
Q Consensus       437 --------------------------------------------------~~~lV~Ey~~~GsL~~~l~~~~~-~~l~~~  465 (492)
                                                                        ..+||||||.+|+|.+++..... ....+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              27999999999999999976432 335677


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 011175          466 TRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       466 ~~l~ia~qIa~gL~YLH~  483 (492)
                      .+++|+.||++||+|||+
T Consensus       165 ~~~~i~~qi~~aL~~LH~  182 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHS  182 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            789999999999999975

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.83  E-value=3.1e-20  Score=180.55  Aligned_cols=116  Identities=27%  Similarity=0.482  Sum_probs=103.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.+.||+|+||.||+|++.+++.||||+++... ...++|.+|+++|++++|+||++++++|.+.+..+|||||+.
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            5688899999999999999998788899999997543 345689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.++++... ..+++..+++|+.||++||+|||+.
T Consensus        89 ~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~  125 (269)
T 4hcu_A           89 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA  125 (269)
T ss_dssp             TCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999997543 3589999999999999999999753

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.83  E-value=3.2e-20  Score=189.38  Aligned_cols=124  Identities=24%  Similarity=0.278  Sum_probs=106.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .+.|.+.++||+|+||.||+|+.. +|+.||||+++.....      ..++|.+|+++|++|+|+||++++++|.+.+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            467889999999999999999864 5889999999754321      346799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||||.+|+|++++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIl  147 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIM  147 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE
Confidence            99999999999999996543  48999999999999999999975      45555543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.83  E-value=3.5e-21  Score=202.38  Aligned_cols=129  Identities=20%  Similarity=0.346  Sum_probs=109.4

Q ss_pred             HHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       361 ~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++....++|.+.++||+|+||.||+|++.+++.||||+++... ...++|++|+++|++|+|+|||+++++|. .+..||
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI  259 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence            3444567788899999999999999999888899999998543 45678999999999999999999999986 677899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|.++|+......+++.++++|+.|||+||+|||+      |+|..+|+
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil  316 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANIL  316 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEE
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence            9999999999999975443358899999999999999999975      55555554

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.83  E-value=2.7e-20  Score=191.18  Aligned_cols=126  Identities=13%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             hcCCCccceeccC--CceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEG--GFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G--~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|++.++||+|  +||.||+|+.. +|+.||||+++....  ...+.|.+|+++|++|+|+|||+++++|.+.+..||
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            3568899999999  99999999964 689999999975432  233578899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|.+++.......+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIl  160 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHIL  160 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE
Confidence            9999999999999987655569999999999999999999964      55555554

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.83  E-value=7.6e-21  Score=203.93  Aligned_cols=127  Identities=27%  Similarity=0.410  Sum_probs=107.9

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ....++|.+.++||+|+||.||+|++.+++.||||+++... ...++|++|+++|++|+|+|||+|+|+|.+ +.+||||
T Consensus       263 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~  340 (535)
T 2h8h_A          263 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT  340 (535)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             ecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence            33456688889999999999999999777889999998543 345689999999999999999999999876 7789999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.++|+......+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl  395 (535)
T 2h8h_A          341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL  395 (535)
T ss_dssp             CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEE
Confidence            99999999999975433458999999999999999999975      55555554

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.83  E-value=1.7e-20  Score=188.65  Aligned_cols=129  Identities=26%  Similarity=0.407  Sum_probs=108.2

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      ....++|.+.+.||+|+||.||+|++.      +++.||||+++..... ..+.|.+|+++|++|+|+||++++++|.+.
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            344678999999999999999999864      3478999999755433 346799999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC----------------------CCCCCHHHHHHHHHHHHHHHHHhhc------CCCC
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG----------------------RPVLDWATRVKIAAGAARGLAYLHE------DCKY  487 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~----------------------~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~  487 (492)
                      +..|||||||.+|+|.++|+...                      ...+++.++++|+.||++||+|||+      |+|.
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp  202 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT  202 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCc
Confidence            99999999999999999997632                      1458999999999999999999975      4555


Q ss_pred             ceee
Q 011175          488 LIFC  491 (492)
Q Consensus       488 ~ii~  491 (492)
                      .+|+
T Consensus       203 ~NIl  206 (343)
T 1luf_A          203 RNCL  206 (343)
T ss_dssp             GGEE
T ss_pred             ceEE
Confidence            4444

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.83  E-value=1.6e-20  Score=188.31  Aligned_cols=124  Identities=19%  Similarity=0.272  Sum_probs=104.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||+|+||.||+|+.. +++.||||+++..... ..+.|.+|+.+|++++|+||++++++|.+.+..|||||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            467999999999999999999864 6889999999754332 33568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|++++....  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        86 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl  137 (323)
T 3tki_A           86 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL  137 (323)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             cCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEE
Confidence            999999999986543  48999999999999999999975      45555544

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.82  E-value=2.7e-20  Score=189.81  Aligned_cols=125  Identities=19%  Similarity=0.266  Sum_probs=107.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ..++|.+.++||+|+||.||+|+. .+|+.||||+++....  ...+.|.+|+++|++|+|+|||+++++|.+.+..|||
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            346799999999999999999986 4588999999975432  2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++..+.  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       107 ~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIl  160 (362)
T 2bdw_A          107 FDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLL  160 (362)
T ss_dssp             ECCCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE
T ss_pred             EecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEE
Confidence            99999999999987543  48999999999999999999975      45555544

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.82  E-value=1.2e-20  Score=197.41  Aligned_cols=132  Identities=18%  Similarity=0.156  Sum_probs=110.3

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      ++++....++|++.++||+|+||+||+|++. +++.||||+++...   ....+.|.+|+++|.+++|+||++|+++|.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            4445556688999999999999999999975 47889999996421   1223358999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .+.+|||||||.+|+|+++|++.+ ..+++..++.|+.||+.||+|||      +|+|..+|+
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NIL  207 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL  207 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCEEEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHee
Confidence            999999999999999999997632 34899999999999999999996      456666554

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.82  E-value=3.2e-20  Score=187.57  Aligned_cols=124  Identities=27%  Similarity=0.343  Sum_probs=106.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.++||+|+||+||+++.. +|+.||||+++..   .....+.+.+|+++|++++|+||++++++|.+.+.+|||
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            367889999999999999999864 6899999999643   223456789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++.+.+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        84 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl  137 (337)
T 1o6l_A           84 MEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLM  137 (337)
T ss_dssp             EECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEE
Confidence            99999999999997654  48999999999999999999975      45555544

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.82  E-value=1.7e-20  Score=183.98  Aligned_cols=125  Identities=22%  Similarity=0.390  Sum_probs=106.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-C-------CEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-G-------REVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-g-------~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      .++|.+.++||+|+||.||+|++.+ +       +.||||+++.......+.|.+|+++|++++|+||++++++|.+.+.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            3568889999999999999998643 3       4699999976555566789999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+|||||+.+|+|.+++.... ..+++..+++|+.||++||+|||+      |+|..+|+
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl  145 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNIL  145 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             CEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEE
Confidence            999999999999999997653 348999999999999999999975      55555554

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.82  E-value=5.6e-20  Score=184.54  Aligned_cols=123  Identities=24%  Similarity=0.290  Sum_probs=105.8

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||+++....      ...++|.+|+++|++|+|+||++++++|.+.+..|
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45888999999999999999864 588999999975432      13567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|.+++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl  146 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIM  146 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEE
Confidence            9999999999999996543  48999999999999999999975      55555543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.82  E-value=7.8e-20  Score=181.74  Aligned_cols=116  Identities=22%  Similarity=0.368  Sum_probs=102.0

Q ss_pred             cCCCc-cceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFAD-QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~-~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      +.|.+ .++||+|+||.||+|+. .+++.||||+++.......+.+.+|+++|.++ +|+||++++++|.+.+..|||||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            45666 37899999999999985 46889999999866555667899999999995 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||.+|+|.+++...+  .+++.+++.|+.||++||+|||++
T Consensus        92 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~  130 (316)
T 2ac3_A           92 KMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNK  130 (316)
T ss_dssp             CCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999997653  489999999999999999999753

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.82  E-value=1.2e-20  Score=193.25  Aligned_cols=126  Identities=25%  Similarity=0.398  Sum_probs=106.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..++|.+.+.||+|+||.||+|++. +++.||||+++..... ..++|.+|+++|++|+|+|||+++|+|.+.+..||||
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            3467888999999999999999975 6889999999754332 2357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.++|+..+ ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       192 e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil  245 (377)
T 3cbl_A          192 ELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCL  245 (377)
T ss_dssp             ECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEE
Confidence            9999999999997543 248999999999999999999975      45555544

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=7.5e-20  Score=183.40  Aligned_cols=124  Identities=19%  Similarity=0.282  Sum_probs=106.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.+.||+|+||.||+|+.. +|+.||+|+++.. ....+.|.+|+++|++++|+||++++++|.+.+..||||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            467889999999999999999864 5788999998743 33456789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+|+|++++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        83 ~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl  134 (321)
T 1tki_A           83 ISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENII  134 (321)
T ss_dssp             CCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEE
Confidence            99999999997543 358999999999999999999975      55555554

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.82  E-value=1.7e-20  Score=197.03  Aligned_cols=126  Identities=27%  Similarity=0.418  Sum_probs=107.3

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ...++|.+.++||+|+||.||+|.+.++..||||+++... ...++|.+|+++|++|+|+||++++|+|.+ +..|||||
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e  258 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  258 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence            3456788889999999999999999777889999998543 345689999999999999999999999876 77899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|.++|+......+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       259 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nil  312 (452)
T 1fmk_A          259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL  312 (452)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             hhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEE
Confidence            9999999999975433458999999999999999999975      55555554

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.82  E-value=4.7e-20  Score=189.90  Aligned_cols=125  Identities=23%  Similarity=0.298  Sum_probs=108.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||+|+++.....+...|.+|+++|++|+|+|||+++++|.+.+..||||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            357899999999999999999864 6889999999765544556899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+|+|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       130 ~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIl  181 (387)
T 1kob_A          130 LSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM  181 (387)
T ss_dssp             CCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeE
Confidence            99999999987543 348999999999999999999975      55555554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.82  E-value=3.9e-20  Score=181.04  Aligned_cols=117  Identities=26%  Similarity=0.406  Sum_probs=100.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|++.+.||+|+||.||+|.+.+++.||||+++... ...++|.+|+++|++|+|+||++++++|.+.+..+|||||+
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            45788899999999999999998888899999997543 34568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.... ..+++.++++|+.||++||+|||++
T Consensus       102 ~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~  139 (283)
T 3gen_A          102 ANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK  139 (283)
T ss_dssp             TTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999997532 3489999999999999999999753

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.82  E-value=4.9e-20  Score=183.88  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=105.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC--eEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~--~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|++. +|+.||||+++... ....+.|.+|+++|++|+|+||++++++|.+.+  ..||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            56888999999999999999864 48899999997533 233567899999999999999999999998765  779999


Q ss_pred             ecCCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.+++..... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl  144 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIM  144 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE
Confidence            99999999999976432 338999999999999999999975      55555553

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.82  E-value=1.8e-20  Score=189.79  Aligned_cols=135  Identities=24%  Similarity=0.356  Sum_probs=110.5

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccce
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSL  428 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l  428 (492)
                      +...++....++|.+.++||+|+||.||+|++      .+++.||||+++..... ..+.|.+|+++|++| +|+|||++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            45666777788999999999999999999973      23578999999764433 345799999999999 89999999


Q ss_pred             eeEEEeCCe-EEEEEecCCCCCHHHHHhcCCC------------------------------------------------
Q 011175          429 VGYCISDDR-RLLIYDYVPNNTLYFHLHGEGR------------------------------------------------  459 (492)
Q Consensus       429 ~g~~~~~~~-~~lV~Ey~~~GsL~~~l~~~~~------------------------------------------------  459 (492)
                      +|+|.+.+. .+||||||.+|+|.++++....                                                
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            999988654 8999999999999999976432                                                


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          460 ----------------PVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       460 ----------------~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                                      ..+++..+++|+.||++||+|||+      |+|..+|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIl  225 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  225 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEE
Confidence                            128899999999999999999975      44554444

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.82  E-value=4.2e-20  Score=180.28  Aligned_cols=126  Identities=27%  Similarity=0.308  Sum_probs=107.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+.. +++.||||+++...  .....++.+|+.++.++ +|+||++++++|.+.+..+||
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            456889999999999999999864 68999999997543  33456799999999999 999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||+.+|+|.+++....  ...+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl  147 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIF  147 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEE
Confidence            99999999999997532  2458999999999999999999975      45554443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.82  E-value=3.3e-20  Score=186.36  Aligned_cols=124  Identities=27%  Similarity=0.385  Sum_probs=100.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      .++|++.++||+|+||.||+++.    .+|+.||||+++...    ......+.+|+++|++|+|+||++++++|.+.+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            35788999999999999999986    468899999997542    2234568899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .|||||||.+|+|++++...+  .+.+..++.|+.||++||+|||+      |+|..+|+
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nil  153 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIM  153 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEE
T ss_pred             EEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeE
Confidence            999999999999999997644  38899999999999999999975      45555544

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.82  E-value=5.2e-20  Score=179.56  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=104.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.++||+|+||.||+|+.. +++.||||++........+.|.+|+++|++|+|+||++++++|.+.+..+|||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence            356889999999999999999864 4778999999765556677899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++..++  .+++.++++|+.||++||+|||+.
T Consensus        88 ~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~  125 (277)
T 3f3z_A           88 CTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKL  125 (277)
T ss_dssp             CCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999887654  389999999999999999999853

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.82  E-value=2.1e-20  Score=184.23  Aligned_cols=124  Identities=27%  Similarity=0.406  Sum_probs=105.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~  439 (492)
                      ++|++.++||+|+||.||+|++     .+++.||||+++.......++|.+|+++|++|+|+||++++++|...  +.++
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence            5688899999999999999984     35788999999865555567899999999999999999999999753  4589


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|.+++.... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        90 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil  146 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNIL  146 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEE
Confidence            9999999999999997653 248999999999999999999975      45555554

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.82  E-value=6.6e-20  Score=181.14  Aligned_cols=124  Identities=25%  Similarity=0.325  Sum_probs=106.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+. .+++.||||++......   ..+.|.+|+++|++++|+||+++++++.+.+..|||
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            35688999999999999999985 46889999998643322   235799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|.+++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        90 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil  143 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNIL  143 (294)
T ss_dssp             EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE
Confidence            99999999999997654  48999999999999999999975      45555544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.82  E-value=6.9e-20  Score=186.73  Aligned_cols=115  Identities=18%  Similarity=0.272  Sum_probs=102.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.++||+|+||.||+++.. +|+.||||+++... ...+.+.+|+.+|++|+|+||++++++|.+.+..||||||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence            357889999999999999999864 68899999997543 2346789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+|+|++++...++  +++..++.|+.||++||+|||+
T Consensus        98 ~~~~~L~~~l~~~~~--~~~~~~~~i~~ql~~~L~~LH~  134 (361)
T 3uc3_A           98 ASGGELYERICNAGR--FSEDEARFFFQQLLSGVSYCHS  134 (361)
T ss_dssp             CCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999976543  8999999999999999999975

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.82  E-value=1.6e-20  Score=184.00  Aligned_cols=126  Identities=24%  Similarity=0.361  Sum_probs=109.5

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ..++|.+.++||+|+||.||+|++.+ ++.||||+++.. ....++|.+|+++|++|+|+||++++++|.+.+..+||||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            45678889999999999999999754 788999999743 3345789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+.+|+|.+++.......+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil  143 (288)
T 3kfa_A           90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL  143 (288)
T ss_dssp             CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEE
T ss_pred             cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEE
Confidence            9999999999987666679999999999999999999974      55555544

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.82  E-value=7.6e-20  Score=185.58  Aligned_cols=126  Identities=21%  Similarity=0.342  Sum_probs=105.7

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC-----CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG-----GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~-----~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++..     .....++|.+|+++|++|+|+||++++++|.+.+..|
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            35688999999999999999985 46899999998532     1224568999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|.+++...  ....+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl  162 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVL  162 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeE
Confidence            999999999998877542  23358999999999999999999975      55555554

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.82  E-value=3.5e-20  Score=189.27  Aligned_cols=126  Identities=26%  Similarity=0.361  Sum_probs=106.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|.+.++||+|+||.||+|++.      +++.||||+++.... ....+|.+|+.+|++|+|+|||+++++|.+.+..
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            356888999999999999999853      356899999975433 3345799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEG-----RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~-----~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||||.+|+|.++++..+     ...+.+.++++|+.||++||+|||+      |+|..+|+
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  213 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCL  213 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEE
Confidence            99999999999999997532     2358999999999999999999975      55655554

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.81  E-value=4.2e-20  Score=179.29  Aligned_cols=116  Identities=26%  Similarity=0.435  Sum_probs=103.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|.+.+.||+|+||.||+|.+.+++.||||+++... ...++|.+|+++|++|+|+||++++++|.+.+..+|||||+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            35788899999999999999998888899999997543 33567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+|+|.+++...+ ..+++.+++.|+.||++||+|||+
T Consensus        86 ~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~  122 (268)
T 3sxs_A           86 SNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLES  122 (268)
T ss_dssp             TTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997643 248999999999999999999975

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.81  E-value=5.7e-20  Score=178.50  Aligned_cols=116  Identities=26%  Similarity=0.506  Sum_probs=97.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC----cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~----~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|++ .|+.||||+++....    ...+.|.+|++++++++|+||++++++|.+.+..+||
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            35788899999999999999997 588999999975432    2246799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      |||+.+|+|.+++.+.   .+++..++.|+.||++||+|||++.
T Consensus        85 ~e~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~~  125 (271)
T 3dtc_A           85 MEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEA  125 (271)
T ss_dssp             EECCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEcCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998543   4899999999999999999998765

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.81  E-value=6.1e-20  Score=183.94  Aligned_cols=116  Identities=24%  Similarity=0.278  Sum_probs=102.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.++||+|+||.||+++.. +|+.||||+++...   ....+.+.+|+.+|++++|+||++++++|.+.+..|||
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            367889999999999999999864 68999999996432   23456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+|+|+++|...+  .+++..++.|+.||++||+|||+
T Consensus        85 ~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~  124 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHS  124 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998654  38999999999999999999975

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.81  E-value=2.7e-20  Score=193.12  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=108.8

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      ++++....++|.+.++||+|+||.||+|+.. +++.||||+++...   ....+.|.+|+++|++++|+|||+|+++|.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3444555678999999999999999999864 58899999996421   2233468899999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+.+|||||||.+|+|++++++.   .+++..++.|+.||+.||+|||+      |+|..+|+
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NIL  200 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNML  200 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHee
Confidence            99999999999999999999754   38899999999999999999975      55555554

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.81  E-value=4.2e-20  Score=184.93  Aligned_cols=114  Identities=27%  Similarity=0.384  Sum_probs=99.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCC----eEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD----RRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~----~~~lV  441 (492)
                      .++|++.++||+|+||.||+|++ .++.||||+++... .....+.+|+.+|++|+|+|||+++|+|.+.+    .+|||
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            46788999999999999999988 47899999996432 23345777999999999999999999998754    36999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||.+|+|.++++.+.   ++|..+++|+.||++||+|||+.
T Consensus       101 ~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~al~~LH~~  140 (322)
T 3soc_A          101 TAFHEKGSLSDFLKANV---VSWNELCHIAETMARGLAYLHED  140 (322)
T ss_dssp             EECCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EecCCCCCHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999997643   89999999999999999999975

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.81  E-value=4.1e-20  Score=189.33  Aligned_cols=121  Identities=24%  Similarity=0.361  Sum_probs=99.1

Q ss_pred             CccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCCC
Q 011175          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~G  448 (492)
                      ...++||+|+||.||+|+. .+|+.||||+++.......++|.+|+++|++|+|+|||+++++|.+.+..|||||||.+|
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            3357899999999999985 468999999998655556678999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          449 TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       449 sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       172 ~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  219 (373)
T 2x4f_A          172 ELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENIL  219 (373)
T ss_dssp             EEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEE
Confidence            9999887543 348999999999999999999975      45554443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.81  E-value=7e-20  Score=185.74  Aligned_cols=123  Identities=21%  Similarity=0.282  Sum_probs=99.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ..++|.+.++||+|+||.||+|++. +++.||||+++...  ..+.|.+|+++|++|+|+||++++++|.+.+..+||||
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            3467889999999999999999975 57889999997532  34578899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+.+|+|.+++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       129 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl  180 (349)
T 2w4o_A          129 LVTGGELFDRIVEKG--YYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLL  180 (349)
T ss_dssp             CCCSCBHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEE
Confidence            999999999997543  48999999999999999999975      45555444

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=193.59  Aligned_cols=132  Identities=17%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      ++++....++|++.++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            445555678899999999999999999996 468999999996422   1223458999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+.+|||||||.+|+|+++|++.+ ..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NIL  194 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNIL  194 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHee
Confidence            999999999999999999997643 248999999999999999999975      55555554

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.81  E-value=5.9e-20  Score=186.81  Aligned_cols=125  Identities=28%  Similarity=0.357  Sum_probs=105.8

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~  439 (492)
                      ..++|++.++||+|+||.||+|+.. +|+.||||+++...   ....+.+.+|+++|+++ +|+||++++++|.+.+.+|
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            4578999999999999999999864 58899999997431   22345688999999998 7999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|++++.+.+.  +++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       101 lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIL  156 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSRR--FDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVL  156 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EEEeCCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEE
Confidence            99999999999999976543  8999999999999999999975      55665554

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.81  E-value=8.3e-20  Score=182.01  Aligned_cols=124  Identities=23%  Similarity=0.333  Sum_probs=103.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||.||+|+..+|+.||||+++....  ...+.+.+|+++|++|+|+||++++++|.+.+..+||||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            467889999999999999999988899999999975432  224679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+ +|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       100 ~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl  151 (311)
T 3niz_A          100 FMEK-DLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLL  151 (311)
T ss_dssp             CCSE-EHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCCC-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEE
Confidence            9984 7888876543 358999999999999999999975      55555554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.81  E-value=2.3e-20  Score=182.24  Aligned_cols=117  Identities=28%  Similarity=0.462  Sum_probs=101.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ..++|++.+.||+|+||.||+|++.+++.||||+++... ...+.|.+|+++|++|+|+||+++++++. .+..+|||||
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   88 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY   88 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence            446788899999999999999998788899999997543 34568999999999999999999999986 4568999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+|.+++.......+++.++++|+.||++||+|||+
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  127 (279)
T 1qpc_A           89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE  127 (279)
T ss_dssp             CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999865432358999999999999999999976

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.80  E-value=9.4e-20  Score=187.42  Aligned_cols=123  Identities=21%  Similarity=0.243  Sum_probs=105.8

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++.. +|+.||||+++...   ....+.+.+|+++|++++|+|||+++++|.+.+.+||||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            56888999999999999999864 58899999986422   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.+++....  .+++..++.|+.||+.||+|||+      |+|..+|+
T Consensus        95 e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl  147 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV--HFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNIL  147 (384)
T ss_dssp             CCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             ecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeE
Confidence            9999999999997654  48999999999999999999975      55555554

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.80  E-value=7.8e-20  Score=181.27  Aligned_cols=118  Identities=28%  Similarity=0.440  Sum_probs=101.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|.+.+.||+|+||.||+|+.      .+++.||||+++.... ...++|.+|+++|++|+|+||++++++|.+.+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            46788899999999999999985      2357899999975433 3346799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCC----------------------CCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGR----------------------PVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~----------------------~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|||||+.+|+|.+++.....                      ..+++.++++|+.||++||+|||+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  168 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE  168 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999976432                      238899999999999999999976

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.80  E-value=9.9e-20  Score=184.91  Aligned_cols=123  Identities=24%  Similarity=0.257  Sum_probs=106.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+++.. +|+.||||+++...   ....+.+.+|+++|++++|+||++++++|.+.+.+||||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            56888999999999999999864 68999999996432   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|+++|.+.+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       121 e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl  173 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLL  173 (350)
T ss_dssp             ECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEE
Confidence            9999999999997654  38999999999999999999975      55555554

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.80  E-value=1.7e-19  Score=176.22  Aligned_cols=115  Identities=25%  Similarity=0.335  Sum_probs=101.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||+++....      ...++|.+|+++|++|+|+||++++++|.+.+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            46888999999999999999864 688999999874322      13568999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||+.+++|.+++....  .+++.+++.|+.||++||+|||+
T Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~  126 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHS  126 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999997543  48999999999999999999985

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.80  E-value=1.3e-19  Score=175.37  Aligned_cols=116  Identities=27%  Similarity=0.462  Sum_probs=103.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|.+.+.||+|+||.||+|++.+++.||||+++... ...++|.+|+++|++|+|+||++++++|.+.+..+|||||+.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            5688889999999999999998788899999997543 234689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|+|.+++.... ..+++..+++|+.||++||+|||+.
T Consensus        87 ~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  123 (267)
T 3t9t_A           87 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA  123 (267)
T ss_dssp             TCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999997653 3589999999999999999999763

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=186.54  Aligned_cols=126  Identities=27%  Similarity=0.372  Sum_probs=106.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.++||+|+||.||+|++.        +++.||||+++..... ..++|.+|+++|+++ +|+|||+++++|.+.
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            467888999999999999999852        2357999999755433 346799999999999 999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +..+||||||.+|+|.+++....              ...+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  223 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  223 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEE
Confidence            99999999999999999997643              2358999999999999999999975      55555554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.80  E-value=8.7e-20  Score=185.02  Aligned_cols=127  Identities=22%  Similarity=0.319  Sum_probs=106.0

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      ....++|.+.++||+|+||.||+|++. +|+.||||+++...   ....+.+.+|+++|.++ +|+||++++++|.+.+.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            345678999999999999999999964 58899999997432   23445788999999887 99999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|||||||.+|+|++++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl  150 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNIL  150 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEE
Confidence            999999999999999997644  38999999999999999999975      45555444

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.80  E-value=1.2e-19  Score=179.55  Aligned_cols=116  Identities=22%  Similarity=0.351  Sum_probs=100.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.++||+|+||.||+++.. +|+.||||+++.......+.|.+|+++|++|+|+||++++++|.+.+..||||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            356888999999999999999864 6899999999865544556799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+|.+++...+  .+++.+++.|+.||++||+|||+
T Consensus        88 ~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~  124 (304)
T 2jam_A           88 VSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHE  124 (304)
T ss_dssp             CCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987544  38999999999999999999976

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.80  E-value=1.1e-19  Score=178.55  Aligned_cols=117  Identities=19%  Similarity=0.264  Sum_probs=102.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|.+.++||+|+||.||+++. .+++.||||+++... ....+.|.+|+++|++|+|+||++++++|.+.+..+|||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            4688899999999999999985 468899999997543 33457899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+|+|.+++...  ....+++..+++|+.||++||+|||+
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~  142 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS  142 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888542  22458999999999999999999975

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.80  E-value=1.2e-19  Score=183.83  Aligned_cols=123  Identities=24%  Similarity=0.295  Sum_probs=104.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||.||++++. +|+.||||+++....   ...+.+.+|+++|+++ +|+|||+++++|.+.+.+|||
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            56888999999999999999964 588999999975432   2235688999999998 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|.+++.+.+  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        89 ~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl  142 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL  142 (345)
T ss_dssp             ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEE
Confidence            99999999999997654  38999999999999999999975      55555554

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=190.10  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=106.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ..++|.+.++||+|+||.||+|+. .+|+.||||+++....  .+.+.|.+|+++|++|+|+|||+++++|.+.+..|||
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            346789999999999999999985 4688999999975443  2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        89 ~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIl  142 (444)
T 3soa_A           89 FDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLL  142 (444)
T ss_dssp             ECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEE
T ss_pred             EEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE
Confidence            99999999999997654  48999999999999999999974      56666554

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.80  E-value=1.8e-19  Score=177.30  Aligned_cols=115  Identities=19%  Similarity=0.326  Sum_probs=98.2

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.++||+|+||.||+|+.. +|+.||||+++.....  ..+.+.+|+++|++++|+||++++++|.+++..+||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            57889999999999999999864 5889999999754332  34679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||.+ +|.+++.... ..+++.+++.|+.||++||+|||+
T Consensus        82 ~~~~-~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~  119 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHS  119 (292)
T ss_dssp             CCSE-EHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9976 5655554432 348999999999999999999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.80  E-value=1e-19  Score=180.99  Aligned_cols=118  Identities=24%  Similarity=0.344  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~l  440 (492)
                      .++|.+.++||+|+||.||+++. .+|+.||||++........+.|.+|+++|++|+|+||++++++|..    .+..||
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            46799999999999999999985 5789999999976555556789999999999999999999999973    346789


Q ss_pred             EEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.+++...  ....+++.++++|+.||++||+|||+
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~  152 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA  152 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988652  23458999999999999999999975

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.80  E-value=1.1e-19  Score=187.67  Aligned_cols=124  Identities=23%  Similarity=0.297  Sum_probs=104.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|++.++||+|+||+||++++. +++.||||+++...   ....+.+.+|+.+|.++ +|+|||+|+++|.+.+.+||
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            467899999999999999999864 57889999997532   22335688999999887 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|++++.+.+  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       131 V~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NIL  185 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL  185 (396)
T ss_dssp             EEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEE
Confidence            999999999999997654  38999999999999999999975      55665554

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.80  E-value=1.1e-19  Score=180.01  Aligned_cols=119  Identities=24%  Similarity=0.406  Sum_probs=102.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ..++|.+.+.||+|+||.||+|++      .+++.||||+++.... ...+.|.+|+++|++| +|+||++++++|.+.+
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            346788899999999999999984      2467899999975443 3346799999999999 9999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCC----------------CCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRP----------------VLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~----------------~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..+|||||+.+|+|.+++......                .+++.++++|+.||++||+|||+
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  163 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS  163 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999765422                48999999999999999999975

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.80  E-value=9.3e-20  Score=181.20  Aligned_cols=114  Identities=30%  Similarity=0.540  Sum_probs=98.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|++.++||+|+||.||+|++ +++.||||+++..  ...+.|.+|+++|++|+|+||++++|+|.  +..+|||||+.
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~   82 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE   82 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence            4678889999999999999998 5788999999642  34568999999999999999999999886  45799999999


Q ss_pred             CCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          447 NNTLYFHLHGEGR-PVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       447 ~GsL~~~l~~~~~-~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +|+|.++++.... ..+++..+++|+.||++||+|||+..
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~  122 (307)
T 2eva_A           83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ  122 (307)
T ss_dssp             TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999986542 24788999999999999999999843

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.80  E-value=1.9e-19  Score=179.94  Aligned_cols=115  Identities=24%  Similarity=0.315  Sum_probs=101.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||+++.....      ..++|.+|+++|++|+|+||++++++|.+.+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            56888999999999999999864 6889999999754321      3567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||+.+|+|.+++....  .+++..++.|+.||++||+|||+
T Consensus        92 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~  133 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHT  133 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999997643  48999999999999999999975

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.80  E-value=4.6e-20  Score=183.51  Aligned_cols=124  Identities=23%  Similarity=0.334  Sum_probs=103.8

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc---hHHHHHHHHHHHhCCCCcccceeeEEEeCCe----
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDR----  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~----  437 (492)
                      .++|++.++||+|+||.||+++. .+++.||||+++......   .+.|.+|+++|++|+|+||+++++++...+.    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            36788999999999999999995 568899999997543322   3578999999999999999999999886543    


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .|||||||.+|+|.++++..+  .+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil  148 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM  148 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             cEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEE
Confidence            399999999999999997654  38999999999999999999975      44554444

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.80  E-value=3.7e-19  Score=174.78  Aligned_cols=118  Identities=22%  Similarity=0.332  Sum_probs=100.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|....+||+|+||.||+|+. .+++.||||+++.......+.|.+|+++|++++|+||++++++|.+.+..+|||||+
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            3455567999999999999985 568899999998766556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|.+++.... ...+++..++.|+.||++||+|||++
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  141 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN  141 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999997653 33467888999999999999999863

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.80  E-value=9.5e-20  Score=179.89  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=99.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--------------------------chHHHHHHHHHHH
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--------------------------GEREFKAEVEIIS  418 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--------------------------~~~~f~~Ei~il~  418 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++.....                          ..++|.+|+++|+
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            46799999999999999999985 46889999999643211                          1356899999999


Q ss_pred             hCCCCcccceeeEEEe--CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCcee
Q 011175          419 RIHHRHLVSLVGYCIS--DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIF  490 (492)
Q Consensus       419 ~l~HpNIv~l~g~~~~--~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii  490 (492)
                      +|+|+||++++++|.+  .+..||||||+.+|+|.+++..   ..+++.+++.|+.||++||+|||+      |+|..+|
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Ni  168 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNL  168 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGE
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHE
Confidence            9999999999999987  5678999999999999876532   348999999999999999999975      4555544


Q ss_pred             e
Q 011175          491 C  491 (492)
Q Consensus       491 ~  491 (492)
                      +
T Consensus       169 l  169 (298)
T 2zv2_A          169 L  169 (298)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.80  E-value=1.8e-19  Score=177.08  Aligned_cols=115  Identities=22%  Similarity=0.344  Sum_probs=100.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|.+.++||+|+||.||+|+..+|+.||||+++.....  ..+.+.+|+++|++|+|+||++++++|.+.+..+|||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            578889999999999999999877999999999754322  236799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+ +|.+++.... ..+++.+++.|+.||++||+|||+
T Consensus        82 ~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  118 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHD  118 (288)
T ss_dssp             CSE-EHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            975 8988887543 348999999999999999999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.80  E-value=5e-20  Score=192.96  Aligned_cols=116  Identities=28%  Similarity=0.354  Sum_probs=93.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++..   .....+.+++|+++|++++|+||++++++|.+.+.+|||
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            46789999999999999999985 46889999999742   233345788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+|+|++++...+  .+++.+++.|+.||++||+|||+
T Consensus       227 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~  266 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHS  266 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999997654  48999999999999999999996

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.80  E-value=6.6e-20  Score=184.60  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC-----CCcchHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG-----GGQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~-----~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      +....++|.+.++||+|+||.||+|+. .+++.||||+++..     .....+.|.+|+++|++|+|+||++++++|.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            445567799999999999999999986 46789999998632     234456899999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC--------------------------------------CCCCCHHHHHHHHHHHHHH
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG--------------------------------------RPVLDWATRVKIAAGAARG  477 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~--------------------------------------~~~l~~~~~l~ia~qIa~g  477 (492)
                      +..+||||||.+|+|.+++....                                      ...+++..++.|+.||++|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            99999999999999999885210                                      1123566778899999999


Q ss_pred             HHHhhc
Q 011175          478 LAYLHE  483 (492)
Q Consensus       478 L~YLH~  483 (492)
                      |+|||+
T Consensus       181 l~~LH~  186 (345)
T 3hko_A          181 LHYLHN  186 (345)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999975

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.80  E-value=1.6e-19  Score=181.82  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=101.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+++.. +++.||+|++.....   ...+.|.+|+++|++|+|+||++++++|.+.+..|||
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            356888999999999999999964 478899999864322   2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+++|.+++..++  .+++.+++.|+.||++||+|||+
T Consensus       120 ~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~  159 (335)
T 2owb_A          120 LELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHR  159 (335)
T ss_dssp             ECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887543  48999999999999999999975

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.80  E-value=2.7e-19  Score=176.26  Aligned_cols=110  Identities=25%  Similarity=0.443  Sum_probs=95.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHh--CCCCcccceeeEEEeC----CeEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISD----DRRL  439 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~l~g~~~~~----~~~~  439 (492)
                      .++|.+.++||+|+||.||+|++ +|+.||||+++.   ...+.+.+|.+++..  ++|+||++++++|.+.    +..+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc---ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            46789999999999999999998 789999999864   245567778887777  7999999999998753    4578


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      |||||+.+|+|.++++..   .+++..+++|+.||++||+|||
T Consensus        83 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH  122 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLH  122 (301)
T ss_dssp             EEECCCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHHHHHHH
T ss_pred             EehhhccCCCHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999543   4899999999999999999999

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.80  E-value=2.4e-19  Score=175.71  Aligned_cols=116  Identities=31%  Similarity=0.600  Sum_probs=99.4

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc-------hHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-------EREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~-------~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      ++|.+.++||+|+||.||+|++ .+++.||||++.......       .++|.+|+++|++++|+||+++++++.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            5688899999999999999986 468899999996543221       167999999999999999999999986544  


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +|||||+.+|+|.+++.... ..+++..+++|+.||++||+|||++.
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~  142 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQN  142 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            79999999999999887653 35899999999999999999999865

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.80  E-value=2.1e-19  Score=177.29  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=101.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|++.+.||+|+||.||+|++. +|+.||||+++.......++|.+|+++|++++|+||++++++|.+.+..+|||||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            467889999999999999999974 5889999999866656678899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |.+|+|.+++.... ..+++.+++.|+.||++||+|||+.
T Consensus        98 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  136 (302)
T 2j7t_A           98 CPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSK  136 (302)
T ss_dssp             CTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999886532 2489999999999999999999863

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.80  E-value=1.5e-19  Score=181.00  Aligned_cols=124  Identities=26%  Similarity=0.387  Sum_probs=105.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~  439 (492)
                      ++|++.++||+|+||.||+|++     .+++.||||+++.......+.|.+|+++|++|+|+||++++++|..  .+..|
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5688899999999999999984     3578899999986655556789999999999999999999999984  55689


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||+.+|+|.+++.... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       103 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl  159 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL  159 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEE
Confidence            9999999999999997532 248999999999999999999975      45555544

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.80  E-value=1.8e-19  Score=181.15  Aligned_cols=118  Identities=26%  Similarity=0.424  Sum_probs=100.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC--------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.+.||+|+||.||+|++.        +++.||||+++.... ...++|.+|+++|++| +|+||++++++|.+.
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            467888999999999999999852        467899999975433 3346799999999999 999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCC--------------CCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEGR--------------PVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +..||||||+.+|+|.+++.....              ..+++.++++|+.||++||+|||+
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~  175 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS  175 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999976431              248899999999999999999975

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=186.86  Aligned_cols=125  Identities=20%  Similarity=0.267  Sum_probs=105.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCC--eEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~--~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|++. +|+.||||+++... ....+.|.+|+++|++|+|+||++++++|.+.+  ..||||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            56888999999999999999864 48999999997433 233567899999999999999999999998765  679999


Q ss_pred             ecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.+++.... ...+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  144 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIM  144 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEE
Confidence            9999999999997543 2238999999999999999999975      55555553

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=184.02  Aligned_cols=123  Identities=18%  Similarity=0.233  Sum_probs=103.4

Q ss_pred             hcCCCccceeccCCceeEEEEE------cCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC---CCcccceeeEEEeCC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDD  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~------~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~  436 (492)
                      .++|.+.++||+|+||.||+|+      ..+++.||||+++..   ...+|.+|++++++|+   |.||++++++|.+.+
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            4668889999999999999994      346889999999743   3567888999998887   999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGE---GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~---~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..|||||||.+|+|+++|+..   ....++|.+++.|+.||++||+|||+      |+|..+|+
T Consensus       141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIl  204 (365)
T 3e7e_A          141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFI  204 (365)
T ss_dssp             CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEE
T ss_pred             CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEE
Confidence            999999999999999999742   23459999999999999999999975      45555554

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.80  E-value=5.1e-20  Score=185.63  Aligned_cols=117  Identities=19%  Similarity=0.279  Sum_probs=103.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC---cc--------------hHHHHHHHHHHHhCCCCcccce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG---QG--------------EREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~---~~--------------~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      .++|.+.++||+|+||.||+|++ +|+.||||+++....   ..              .+.|.+|+++|++|+|+||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46789999999999999999999 899999999963211   11              1789999999999999999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHH------HhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFH------LHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~------l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|+|.+.+..|||||||.+|+|.++      +.......+++..++.|+.||++||+|||+
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  169 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN  169 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988      655435569999999999999999999997

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.80  E-value=1.6e-19  Score=181.87  Aligned_cols=127  Identities=23%  Similarity=0.372  Sum_probs=104.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ..++|.+.++||+|+||.||+|++      .+++.||||+++... ....+.|.+|+++|++| +|+||++++|+|.+.+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            456788999999999999999985      235679999997543 23456899999999999 9999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCC---------------------CCCCHHHHHHHHHHHHHHHHHhhc------CCCCce
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGR---------------------PVLDWATRVKIAAGAARGLAYLHE------DCKYLI  489 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~---------------------~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~i  489 (492)
                      ..|||||||.+|+|.++|.....                     ..+++.+++.|+.||++||+|||+      |+|..+
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~N  202 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  202 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhh
Confidence            99999999999999999976432                     237899999999999999999975      455554


Q ss_pred             ee
Q 011175          490 FC  491 (492)
Q Consensus       490 i~  491 (492)
                      |+
T Consensus       203 Il  204 (344)
T 1rjb_A          203 VL  204 (344)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.80  E-value=1.1e-19  Score=184.43  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-----CCcccceeeEE
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----HRHLVSLVGYC  432 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----HpNIv~l~g~~  432 (492)
                      +++.....++|.+.++||+|+||.||+|+. .+++.||||+++.. ....+.+.+|+++|++++     |+|||+++++|
T Consensus        27 ~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~  105 (360)
T 3llt_A           27 WKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKF  105 (360)
T ss_dssp             CCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEE
T ss_pred             eecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccccee
Confidence            333444567899999999999999999986 46889999999732 233457889999999996     99999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       433 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ...+..+|||||+ +|+|.+++.......+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       106 ~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  169 (360)
T 3llt_A          106 MYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENIL  169 (360)
T ss_dssp             EETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             eECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEE
Confidence            9999999999999 9999999987665568999999999999999999964      56666554

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.80  E-value=2.8e-19  Score=176.43  Aligned_cols=124  Identities=27%  Similarity=0.407  Sum_probs=101.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~  438 (492)
                      +.|++.++||+|+||.||+|++     .+++.||||+++... ....+.|.+|+++|++|+|+||++++++|.+.  +..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4478889999999999999984     357899999997443 33457899999999999999999999999876  668


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|||||+.+|+|.+++.... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil  158 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVL  158 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEE
Confidence            99999999999999996543 348999999999999999999975      45554443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.80  E-value=5.8e-20  Score=183.43  Aligned_cols=128  Identities=26%  Similarity=0.359  Sum_probs=98.0

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCCC----CEEEEEEcccC--CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPDG----REVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~g----~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      ...++|.+.++||+|+||.||+|++.+.    ..||||+++..  .....++|.+|+++|++|+|+||+++++++.+.+.
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            3446799999999999999999986443    27999999754  23445689999999999999999999999988766


Q ss_pred             E------EEEEecCCCCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 R------LLIYDYVPNNTLYFHLHGEG----RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~------~lV~Ey~~~GsL~~~l~~~~----~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .      ++||||+.+|+|.+++....    ...+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIl  169 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCM  169 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEE
Confidence            5      99999999999999886422    2248999999999999999999975      45555544

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.80  E-value=1.7e-19  Score=181.10  Aligned_cols=125  Identities=22%  Similarity=0.341  Sum_probs=103.4

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ...++|.+.++||+|+||.||+|+. .+|+.||||+++.....  ..+.|.+|+++|++|+|+||++++++|.+.+..+|
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3457799999999999999999984 46889999999754332  23568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||. |+|.+++.....  +++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       111 v~e~~~-~~L~~~~~~~~~--~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIl  164 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNPD--VSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLL  164 (329)
T ss_dssp             EEECCS-EEHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEecCC-CCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEE
Confidence            999997 599999976543  8999999999999999999975      45555554

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=176.74  Aligned_cols=116  Identities=19%  Similarity=0.283  Sum_probs=101.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|++.++||+|+||.||+|+.. +|+.||||++.......  .+.|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence            367899999999999999999964 58999999986543322  457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||.+++|.+++...+  .+++..++.|+.||++||+|||+
T Consensus        82 e~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~  120 (311)
T 4agu_A           82 EYCDHTVLHELDRYQR--GVPEHLVKSITWQTLQAVNFCHK  120 (311)
T ss_dssp             ECCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998886543  38999999999999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.80  E-value=1.2e-19  Score=183.56  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=103.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..++|++.+.||+|+||.||+|+.. +|+.||||+++...    .++.+|+++|.++ +|+||++++++|.+.+..||||
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            3467899999999999999999864 58899999997543    2356788888888 7999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|++++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        96 E~~~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl  148 (342)
T 2qr7_A           96 ELMKGGELLDKILRQK--FFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNIL  148 (342)
T ss_dssp             CCCCSCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEE
Confidence            9999999999997654  48999999999999999999975      55555554

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.80  E-value=2.6e-19  Score=175.06  Aligned_cols=116  Identities=20%  Similarity=0.305  Sum_probs=102.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++....  ...+.|.+|+++|++|+|+||++++++|.+.+..+|||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            46799999999999999999986 4588999999964332  23467899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++..+.  .+++..++.|+.||++||+|||+
T Consensus        85 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~  123 (284)
T 3kk8_A           85 DLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHS  123 (284)
T ss_dssp             CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998887653  48999999999999999999975

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.80  E-value=2.2e-19  Score=193.18  Aligned_cols=126  Identities=29%  Similarity=0.348  Sum_probs=108.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||+++..   .....+.+++|+++|++++|+|||+++++|.+.+.+|||
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            456888999999999999999864 6899999999642   123346789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++...+...+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNIL  318 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENIL  318 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEE
Confidence            999999999999987665569999999999999999999975      55555554

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.79  E-value=4.2e-19  Score=178.18  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=100.2

Q ss_pred             cceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          372 QNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      .++||+|+||.||+|+.. +|+.||||+++.   .....+.+|+++|++++ |+||++++++|.+.+..|||||||.+|+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK---RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEG---GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEECh---hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            478999999999999864 588999999964   23567889999999997 9999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+++..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        93 L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl  138 (325)
T 3kn6_A           93 LFERIKKKK--HFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLL  138 (325)
T ss_dssp             HHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEE
Confidence            999998754  48999999999999999999975      45555444

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.79  E-value=1.9e-19  Score=175.78  Aligned_cols=115  Identities=23%  Similarity=0.417  Sum_probs=99.8

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe---------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS---------  434 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~---------  434 (492)
                      ..++|++.++||+|+||.||+|++. +|+.||||+++...    +.+.+|+++|++|+|+||++++++|..         
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            3456889999999999999999974 68999999997532    467899999999999999999999865         


Q ss_pred             -------CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          435 -------DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       435 -------~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                             .+..||||||+.+|+|.+++.......+++..+++|+.||++||+|||+
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  140 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS  140 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                   3457999999999999999976544568999999999999999999986

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.79  E-value=3.1e-19  Score=173.75  Aligned_cols=124  Identities=20%  Similarity=0.272  Sum_probs=106.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+.+..|||
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            367889999999999999999964 68999999986432   23346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||+.+++|.+++...+  .+++.++++|+.||++||+|||+      |++..+|+
T Consensus        90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil  143 (276)
T 2h6d_A           90 MEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVL  143 (276)
T ss_dssp             EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEE
T ss_pred             EeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEE
Confidence            99999999999997654  38999999999999999999975      45554443

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.79  E-value=2.3e-19  Score=179.23  Aligned_cols=125  Identities=22%  Similarity=0.360  Sum_probs=91.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||+|+||.||+|+.. +|+.||||+++.... ...+.+.+|+++|++|+|+||++++++|.+.+..|||||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            356888899999999999999864 588999999975432 334679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGE----GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~----~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||. |+|.+++...    ....+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl  140 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLL  140 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeE
Confidence            998 6898888642    12358999999999999999999975      55555544

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.79  E-value=1.5e-19  Score=182.57  Aligned_cols=123  Identities=16%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+.+..+||
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46789999999999999999995 568899999986321   22345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||+ +|+|++++...+  .+++.+++.|+.||++||+|||      +|+|..+|+
T Consensus        88 ~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl  140 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLL  140 (336)
T ss_dssp             ECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEE
T ss_pred             EECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEE
Confidence            9999 789999887654  3899999999999999999996      466665554

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.79  E-value=2.6e-19  Score=179.28  Aligned_cols=118  Identities=27%  Similarity=0.403  Sum_probs=99.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|.+.+.||+|+||.||+|++.      +++.||||+++.... ...++|.+|+.+|++|+|+||++++|+|.+.+..
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            357889999999999999999842      467899999974432 3446799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGR-----PVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~-----~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||||.+|+|.+++.....     ..+++.++++|+.||++||+|||+
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~  158 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE  158 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999976532     348999999999999999999976

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.79  E-value=1.7e-19  Score=190.56  Aligned_cols=124  Identities=22%  Similarity=0.304  Sum_probs=106.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+.+..|||
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            357889999999999999999864 68999999996432   22346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|++++..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        95 ~E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIl  148 (476)
T 2y94_A           95 MEYVSGGELFDYICKNG--RLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVL  148 (476)
T ss_dssp             EECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEE
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEE
Confidence            99999999999997544  48999999999999999999975      45555443

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.79  E-value=2.9e-19  Score=175.91  Aligned_cols=116  Identities=17%  Similarity=0.244  Sum_probs=101.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++.. +++.||+|++.....   ...+.|.+|+++|++++|+||++++|+|.+.+..+|||
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            56888999999999999999964 578899999864322   23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+++|.+++....  .+++.+++.|+.||++||+|||++
T Consensus        95 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~  134 (294)
T 2rku_A           95 ELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRN  134 (294)
T ss_dssp             ECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999887543  489999999999999999999763

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.79  E-value=4.3e-20  Score=184.16  Aligned_cols=123  Identities=24%  Similarity=0.378  Sum_probs=103.6

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      +....++|.+.++||+|+||.||+|++.      +++.||||+++.... ....+|.+|+++|++++|+||++++++|.+
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   99 (322)
T 1p4o_A           20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   99 (322)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence            3445577999999999999999999753      367899999975433 234579999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCC--------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEG--------RPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~--------~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+..+||||||.+|+|.++++..+        ...+++.++++|+.||++||+|||++
T Consensus       100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  157 (322)
T 1p4o_A          100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN  157 (322)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999986421        13478999999999999999999753

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.79  E-value=1.9e-19  Score=187.11  Aligned_cols=125  Identities=19%  Similarity=0.280  Sum_probs=102.4

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--------CcchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--------GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--------~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      ...++|.+.++||+|+||.||+|+. .+++.||||+++...        ......|.+|+++|++|+|+|||+++++|. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            3467899999999999999999985 458899999986421        111235899999999999999999999975 


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+..|||||||.+|+|++++...+  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIl  271 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVL  271 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             cCceEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEE
Confidence            566899999999999999886544  48999999999999999999975      45555444

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.79  E-value=3e-19  Score=177.59  Aligned_cols=118  Identities=20%  Similarity=0.245  Sum_probs=102.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..++|.+.++||+|+||.||+|+.. +++.||||+++.....   ..+.|.+|+++|++|+|+||++++++|.+++..||
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            3578999999999999999999864 6889999999754322   23679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+++|.+++...+  .+++.+++.|+.||++||+|||+.
T Consensus       112 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~  153 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAA  153 (309)
T ss_dssp             EEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999997643  489999999999999999999763

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.79  E-value=2.8e-19  Score=173.96  Aligned_cols=117  Identities=19%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..++|++.+.||+|+||.||+|+.. +|+.||||+++... ....+.|.+|++++++++|+||+++++++.+.+..||||
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence            3467899999999999999999864 68899999997443 334568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+|+|.+++..+.  .+++.+++.|+.||++||+|||+
T Consensus        85 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~  123 (276)
T 2yex_A           85 EYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHG  123 (276)
T ss_dssp             ECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999886543  48999999999999999999975

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.79  E-value=4.7e-19  Score=175.75  Aligned_cols=118  Identities=18%  Similarity=0.300  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++....   ...++|.+|+++|++|+|+||++++++|.+.+..+||
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            35688999999999999999985 5789999999975332   2345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++..  ..+..+++..+++|+.||++||+|||+
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~  154 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS  154 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998864  223458999999999999999999975

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.6e-19  Score=178.25  Aligned_cols=125  Identities=26%  Similarity=0.404  Sum_probs=105.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-----CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCC--eE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~--~~  438 (492)
                      .++|++.++||+|+||.||+|++     .+|+.||||+++.......+.|.+|+++|++|+|+||++++++|...+  ..
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            35688899999999999999984     357899999998765566678999999999999999999999987654  67


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|||||+.+|+|.+++.... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIl  177 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNIL  177 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             EEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEE
Confidence            99999999999999997653 348999999999999999999975      45554443

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.79  E-value=1.6e-19  Score=181.02  Aligned_cols=119  Identities=24%  Similarity=0.383  Sum_probs=101.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ..++|.+.++||+|+||.||+|++..      ++.||||+++.... ...+.|.+|+++|++| +|+||++++++|.+.+
T Consensus        44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  123 (333)
T 2i1m_A           44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG  123 (333)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence            34678899999999999999998532      24799999975443 2346799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ..|||||||.+|+|.+++....            ...+++..+++|+.||++||+|||+
T Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  182 (333)
T 2i1m_A          124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS  182 (333)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999986431            2347999999999999999999976

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.79  E-value=4.2e-19  Score=188.86  Aligned_cols=116  Identities=19%  Similarity=0.301  Sum_probs=99.5

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-------------cchHHHHHHHHHHHhCCCCcccceeeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-------------QGEREFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-------------~~~~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      .++|.+.++||+|+||.||+|+.. +++.||||+++....             ...+.+.+|+++|++|+|+|||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467999999999999999999864 578999999964321             234679999999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       432 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+.+..|||||||.+|+|++++...+  .+++..++.|+.||++||+|||+
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~  164 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHK  164 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987654  38999999999999999999975

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.79  E-value=2.2e-19  Score=182.68  Aligned_cols=125  Identities=25%  Similarity=0.272  Sum_probs=106.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~  439 (492)
                      ..++|.+.++||+|+||.||+|+.. +|+.||||+++...   ....+.+.+|+++|.++ +|+||++++++|.+.+.+|
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            4578999999999999999999975 47889999997432   23446788999999988 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|+++|...++  +++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        98 lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl  153 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVGR--FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVM  153 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EEEeCCCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEE
Confidence            99999999999999976543  8999999999999999999975      55555554

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.79  E-value=2.6e-19  Score=174.60  Aligned_cols=117  Identities=24%  Similarity=0.356  Sum_probs=102.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++...   ....+.|.+|++++++++|+||++++++|.+.+..|||
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            46788999999999999999985 578999999996432   22346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++.... ..+++.++++|+.||++||+|||+
T Consensus        90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  130 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHS  130 (278)
T ss_dssp             EECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997543 358999999999999999999975

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.79  E-value=2.9e-19  Score=179.24  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++...  ..++|.+|+++|++| +|+||+++++++.+.+..+||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            35788999999999999999984 578899999987542  234689999999999 99999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+ +|+|.+++...+ ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        86 ~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nil  137 (330)
T 2izr_A           86 LL-GPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFL  137 (330)
T ss_dssp             CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             eC-CCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHee
Confidence            99 999999997642 358999999999999999999975      55555554

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.79  E-value=3.7e-19  Score=188.11  Aligned_cols=123  Identities=20%  Similarity=0.326  Sum_probs=106.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+|+.. +|+.||||++....   ....+.|.+|+++|++|+|+|||+++++|.+.+..||||
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            56888999999999999999864 68999999996433   234568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|++++...+  .+++..+++|+.||++||+|||+      |+|..+|+
T Consensus       106 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil  158 (484)
T 3nyv_A          106 EVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLL  158 (484)
T ss_dssp             CCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEE
Confidence            9999999999997654  48999999999999999999975      45555544

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.79  E-value=2.3e-19  Score=179.90  Aligned_cols=130  Identities=18%  Similarity=0.223  Sum_probs=107.7

Q ss_pred             HHHHhcCCCcc-ceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          362 LVKATDGFADQ-NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       362 l~~~~~~~~~~-~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      .....+.|.+. ++||+|+||.||+|+.. +|+.||||+++...  ....++|.+|+.+|+++ +|+||++++++|.+.+
T Consensus        23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            34445567766 88999999999999864 58999999997432  23356899999999999 5699999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..|||||||.+|+|.+++.......+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl  163 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNIL  163 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEE
Confidence            99999999999999999876655679999999999999999999975      45554444

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.79  E-value=6.8e-19  Score=175.70  Aligned_cols=120  Identities=30%  Similarity=0.443  Sum_probs=101.6

Q ss_pred             CCccceeccCCceeEEEEEcC-----CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeC--CeEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~-----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~--~~~~l  440 (492)
                      |++.++||+|+||.||++.+.     +|+.||||+++.... ...+.|.+|+++|++|+|+||++++++|.+.  +.++|
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            478899999999999998652     577899999986543 3346799999999999999999999999984  67899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||+.+|+|.+++.+..   +++.++++|+.||++||+|||+      |+|..+|+
T Consensus       113 v~e~~~~~~L~~~l~~~~---~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil  166 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVL  166 (318)
T ss_dssp             EECCCTTCBHHHHGGGSC---CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEecccCCcHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEE
Confidence            999999999999997643   8999999999999999999975      45555544

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.79  E-value=3e-19  Score=181.27  Aligned_cols=115  Identities=22%  Similarity=0.273  Sum_probs=102.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|.+.++||+|+||.||+|++. +|+.||||+++..... ..+.|.+|+++|++++|+||++++++|.+.+..||||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            56888999999999999999864 6889999999765332 346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+|+|.+++...+  .+++..+++|+.||++||+|||+
T Consensus       113 ~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~  149 (360)
T 3eqc_A          113 MDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLRE  149 (360)
T ss_dssp             CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997654  38999999999999999999986

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.6e-19  Score=193.98  Aligned_cols=121  Identities=26%  Similarity=0.390  Sum_probs=100.7

Q ss_pred             CCccc-eeccCCceeEEEEEcC---CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          369 FADQN-LLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       369 ~~~~~-~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      |.+.+ .||+|+||.||+|++.   ++..||||+++.... ...++|.+|+++|++|+|+|||+++|+|.+ +.+|||||
T Consensus       337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E  415 (613)
T 2ozo_A          337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVME  415 (613)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred             eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEE
Confidence            33334 7999999999999863   456799999986533 345789999999999999999999999976 67999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|.++|++. +..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       416 ~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NIL  468 (613)
T 2ozo_A          416 MAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVL  468 (613)
T ss_dssp             CCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             eCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEE
Confidence            99999999999754 3458999999999999999999975      55555554

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.79  E-value=4.8e-19  Score=174.00  Aligned_cols=116  Identities=23%  Similarity=0.283  Sum_probs=99.0

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~l  440 (492)
                      .|.+.++||+|+||.||+|+. .+++.||||+++...  ....+.|.+|+++|++|+|+||++++++|..    .+..+|
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            367778999999999999986 457889999987433  2334679999999999999999999999876    355799


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||+.+|+|.+++....  .+++..++.|+.||++||+|||++.
T Consensus       107 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~  149 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRT  149 (290)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             EEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999997643  3899999999999999999999865

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.79  E-value=2.2e-20  Score=187.89  Aligned_cols=123  Identities=21%  Similarity=0.267  Sum_probs=100.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--------cchHHHHHHHHHHHhCC---------CCcccce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--------QGEREFKAEVEIISRIH---------HRHLVSL  428 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ei~il~~l~---------HpNIv~l  428 (492)
                      .++|++.++||+|+||+||+|++ +|+.||||+++....        ...+.|.+|+++|++|+         |+|||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35678889999999999999998 789999999975432        22368999999999886         8888888


Q ss_pred             eeEEE------------------------------eCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 011175          429 VGYCI------------------------------SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGL  478 (492)
Q Consensus       429 ~g~~~------------------------------~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL  478 (492)
                      ++++.                              +.+..|||||||.+|+|.+++.+   ..+++.+++.|+.||++||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL  174 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASL  174 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence            87654                              26789999999999987777643   3489999999999999999


Q ss_pred             HHhh-------cCCCCceeeC
Q 011175          479 AYLH-------EDCKYLIFCF  492 (492)
Q Consensus       479 ~YLH-------~~~k~~ii~~  492 (492)
                      +|||       +|+|..+|++
T Consensus       175 ~~lH~~~~ivHrDlKp~NILl  195 (336)
T 2vuw_A          175 AVAEASLRFEHRDLHWGNVLL  195 (336)
T ss_dssp             HHHHHHHCCBCSCCCGGGEEE
T ss_pred             HHHHHhCCEeECCCCHHHEEE
Confidence            9998       3777777763

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.79  E-value=3.2e-19  Score=189.31  Aligned_cols=123  Identities=18%  Similarity=0.257  Sum_probs=101.6

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|.+.++||+|+||.||+|+.. +++.||||+++...  ....+.|.+|+++|++|+|+|||+++++|.+.+..|||||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            45888999999999999999964 68899999997543  2335689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|++++....  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       117 ~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil  168 (494)
T 3lij_A          117 CYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLL  168 (494)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEE
Confidence            999999999887654  38999999999999999999975      44554444

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=1.6e-19  Score=183.52  Aligned_cols=123  Identities=23%  Similarity=0.303  Sum_probs=105.1

Q ss_pred             cCCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      ++|.+.++||+|+||.||+++.    .+|+.||||+++...    ....+.|.+|+++|++| +|+||++++++|.+.+.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5788999999999999999986    368899999996432    12345688999999999 69999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .|||||||.+|+|+++|....  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIl  191 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL  191 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             EEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE
Confidence            999999999999999997654  38999999999999999999975      55555554

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.79  E-value=3.1e-19  Score=178.35  Aligned_cols=115  Identities=21%  Similarity=0.323  Sum_probs=96.2

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--------cchHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--------QGEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      .++|.+.+.||+|+||.||+|+. .+++.||||+++....        .....|.+|+++|++|+|+||+++++++...+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            45789999999999999999986 4578999999864321        12245899999999999999999999987654


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                       .||||||+.+|+|.+++....  .+++..++.|+.||++||+|||+
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~  132 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHE  132 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence             899999999999999987543  48999999999999999999975

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.79  E-value=2.6e-19  Score=174.85  Aligned_cols=116  Identities=29%  Similarity=0.415  Sum_probs=101.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.+.||+|+||.||+|+.. +++.||||++....   ....+.|.+|++++++++|+||++++++|.+.+..+||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            467889999999999999999864 57789999985422   12245799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++....  .+++..++.|+.||++||+|||+
T Consensus        88 ~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~  127 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHS  127 (279)
T ss_dssp             ECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999987654  38999999999999999999986

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.79  E-value=3.9e-19  Score=183.79  Aligned_cols=120  Identities=21%  Similarity=0.290  Sum_probs=98.2

Q ss_pred             cCCCcc-ceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHh-CCCCcccceeeEEEe----CCeEE
Q 011175          367 DGFADQ-NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISR-IHHRHLVSLVGYCIS----DDRRL  439 (492)
Q Consensus       367 ~~~~~~-~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~-l~HpNIv~l~g~~~~----~~~~~  439 (492)
                      ++|.+. ++||+|+||.||+|+.. +|+.||||+++.     ...+.+|++++.+ ++|+||++|+++|..    .+.+|
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            445554 78999999999999864 588999999963     3568889998754 589999999999876    56789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|+++|+......+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nil  193 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL  193 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEE
Confidence            99999999999999987655569999999999999999999975      55555554

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.79  E-value=3.9e-19  Score=173.34  Aligned_cols=120  Identities=18%  Similarity=0.287  Sum_probs=102.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~l  440 (492)
                      .++|++.++||+|+||.||+++.. +|+.||||+++....  ...+.|.+|+++|++|+|+||++++++|.+  .+..||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            367889999999999999999864 688999999975432  234579999999999999999999999865  567899


Q ss_pred             EEecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          441 IYDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      ||||+.+|+|.+++...  .+..+++.++++|+.||++||+|||+.+
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~  131 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRS  131 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999998643  2345899999999999999999999754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.79  E-value=5.1e-19  Score=179.52  Aligned_cols=124  Identities=20%  Similarity=0.268  Sum_probs=104.9

Q ss_pred             cHHHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc-----------chHHHHHHHHHHHhCCCCccc
Q 011175          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-----------GEREFKAEVEIISRIHHRHLV  426 (492)
Q Consensus       358 ~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~-----------~~~~f~~Ei~il~~l~HpNIv  426 (492)
                      ..+++....++|.+.++||+|+||.||+|+..+|+.||||++......           ..+.|.+|+++|++|+|+||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            356777888999999999999999999999878999999998642211           126799999999999999999


Q ss_pred             ceeeEEEeC-----CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          427 SLVGYCISD-----DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       427 ~l~g~~~~~-----~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +++++|...     ..+|||||||. |+|.+++...+ ..+++..++.|+.||++||+|||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  152 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHE  152 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999653     35799999998 68888887543 358999999999999999999975

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=4.1e-19  Score=178.65  Aligned_cols=116  Identities=29%  Similarity=0.458  Sum_probs=100.0

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-----CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.++||+|+||.||+|++..     +..||||+++..... ..++|.+|+++|++|+|+||++++|+|.+.+..+|
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            457778999999999999998642     235999999754332 34579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||.+|+|.+++.... ..+++.++++|+.||++||+|||+
T Consensus       124 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~  165 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLAN  165 (333)
T ss_dssp             EEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997643 358999999999999999999975

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.79  E-value=6.3e-19  Score=173.04  Aligned_cols=119  Identities=17%  Similarity=0.299  Sum_probs=104.2

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ...++|.+.++||+|+||.||+|+.. +++.||||+++...  ....+.|.+|+++|++|+|+||++++++|.+.+..||
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence            34567999999999999999999864 68899999986432  3345689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.+++|.+++....  .+++.++++|+.||++||+|||+.
T Consensus        99 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~  140 (287)
T 2wei_A           99 VGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKH  140 (287)
T ss_dssp             EECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999998887544  389999999999999999999863

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.78  E-value=2.1e-19  Score=178.28  Aligned_cols=128  Identities=24%  Similarity=0.387  Sum_probs=106.4

Q ss_pred             ccHHHHHHHhcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccce
Q 011175          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSL  428 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l  428 (492)
                      +...++....++|.+.++||+|+||.||+|++      .+++.||||+++..... ..+.|.+|+++|+++ +|+||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            44556666678899999999999999999974      24678999999754433 345799999999999 79999999


Q ss_pred             eeEEEeCC-eEEEEEecCCCCCHHHHHhcCCC--------------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDD-RRLLIYDYVPNNTLYFHLHGEGR--------------PVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~-~~~lV~Ey~~~GsL~~~l~~~~~--------------~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++|.+.+ ..+||||||.+|+|.+++.....              ..+++.+++.|+.||++||+|||++
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  167 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR  167 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            99998755 48999999999999999976542              2378999999999999999999763

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.78  E-value=5.6e-19  Score=173.91  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=102.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC---------cchHHHHHHHHHHHhCC-CCcccceeeEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---------QGEREFKAEVEIISRIH-HRHLVSLVGYCI  433 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~---------~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~  433 (492)
                      ..++|.+.++||+|+||.||+|+.. +|+.||||+++....         ...+.|.+|+++|++++ |+||++++++|.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            4578999999999999999999864 588999999975431         11346889999999995 999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          434 SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       434 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+..+|||||+.+|+|.+++..+.  .+++.+++.|+.||++||+|||+.
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  143 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKL  143 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999997643  489999999999999999999763

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.78  E-value=6.1e-19  Score=178.08  Aligned_cols=122  Identities=17%  Similarity=0.251  Sum_probs=104.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCC--CcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~H--pNIv~l~g~~~~~~~~~lV~  442 (492)
                      +.|.+.++||+|+||.||+++..+++.||||+++.....  ..+.|.+|+++|++|+|  +||++++++|.+.+..||||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            568889999999999999999888999999999754332  33679999999999976  99999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      | +.+|+|.+++....  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        89 e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIl  140 (343)
T 3dbq_A           89 E-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFL  140 (343)
T ss_dssp             C-CCSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             e-CCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEE
Confidence            9 56889999998654  48999999999999999999974      55555554

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.78  E-value=4.9e-19  Score=174.91  Aligned_cols=119  Identities=22%  Similarity=0.328  Sum_probs=98.6

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhCCCCcccceeeEEEe--CCe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDR  437 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~  437 (492)
                      ..++|.+.++||+|+||.||+++. .+++.||||+++...    ....+.|.+|+++|++|+|+||++++++|..  .+.
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            347899999999999999999996 468899999996432    2345679999999999999999999999953  457


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .|||||||.+| |.+++.......+++..+++|+.||++||+|||++
T Consensus        83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  128 (305)
T 2wtk_C           83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ  128 (305)
T ss_dssp             EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC
Confidence            89999999887 77777665555699999999999999999999753

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=180.74  Aligned_cols=125  Identities=19%  Similarity=0.247  Sum_probs=105.7

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--------chHHHHHHHHHHHhCCCCcccceeeEEEeC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~  435 (492)
                      ..++|.+.++||+|+||.||+|+. .+|+.||||+++.....        ..+.|.+|+++|++|+|+||++++++|.+.
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            356799999999999999999984 56889999999754321        234688999999999999999999999999


Q ss_pred             CeEEEEEecCCCC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          436 DRRLLIYDYVPNN-TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       436 ~~~~lV~Ey~~~G-sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +..+|||||+.+| +|.+++....  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl  162 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIV  162 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEE
Confidence            9999999999877 9999997654  38999999999999999999975      55555554

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=175.43  Aligned_cols=123  Identities=24%  Similarity=0.191  Sum_probs=100.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||+||+|++. +|+.||||+++....  ....++++|+..+.++ +|+||++++++|.+.+..||||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            56899999999999999999865 689999999865432  2234566677666665 9999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||| +|+|.+++...+ ..++|.+++.|+.||++||+|||+      |+|..+|+
T Consensus       137 e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl  189 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF  189 (311)
T ss_dssp             ECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             ecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE
Confidence            999 778988887543 358999999999999999999975      44554444

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.78  E-value=5.7e-19  Score=172.77  Aligned_cols=124  Identities=25%  Similarity=0.299  Sum_probs=102.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|++.++||+|+||.||+|++..    +..||||+++..... ..+.|.+|+++|++++|+||+++++++ .++..||
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence            4678889999999999999998632    456999998754333 345799999999999999999999998 4567899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||+.+|+|.+++...+ ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        93 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil  148 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL  148 (281)
T ss_dssp             EEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEE
Confidence            999999999999997653 358999999999999999999975      45555544

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.78  E-value=4e-19  Score=174.06  Aligned_cols=117  Identities=27%  Similarity=0.424  Sum_probs=102.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|.+.+.||+|+||.||+|+.. +++.||||++....   ....+.|.+|+++|++++|+||++++++|.+.+..|||
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            367889999999999999999864 57789999986421   22346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++...+  .+++..++.|+.||++||+|||+.
T Consensus        93 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~  133 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHER  133 (284)
T ss_dssp             ECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999997654  389999999999999999999863

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.78  E-value=1.3e-18  Score=174.61  Aligned_cols=113  Identities=28%  Similarity=0.447  Sum_probs=100.2

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHh--CCCCcccceeeEEEeCC----
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----  436 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~l~g~~~~~~----  436 (492)
                      ....++|.+.++||+|+||.||+|++ +|+.||||+++.   ...++|.+|++++..  ++|+||+++++++...+    
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~  113 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT  113 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc---hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence            34456799999999999999999998 689999999863   245678899999988  79999999999999876    


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      ..||||||+.+|+|.+++.+.   .+++.++++|+.||++||+|||
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH  156 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLH  156 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999764   3899999999999999999999

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.78  E-value=6.9e-19  Score=176.50  Aligned_cols=123  Identities=25%  Similarity=0.437  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC----EEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.++||+|+||.||+|++. +++    .||||+++... ....++|.+|+++|++++|+||++++|+|.+. ..++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEE
Confidence            56888999999999999999853 344    36888886433 34457899999999999999999999999875 4789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||+.+|+|.++++... ..+++..+++|+.||++||+|||+      |+|..+|+
T Consensus        94 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl  149 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVL  149 (327)
T ss_dssp             EEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEE
Confidence            999999999999997643 358999999999999999999975      55555554

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.78  E-value=4.1e-19  Score=188.04  Aligned_cols=124  Identities=18%  Similarity=0.280  Sum_probs=106.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC--CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||+++..  .....+.|.+|+++|++|+|+|||+++++|.+.+.+||||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            356889999999999999999864 6889999998632  2334568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|++++...+  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       101 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil  153 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENIL  153 (486)
T ss_dssp             CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEE
Confidence            9999999999887654  38999999999999999999975      45555544

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.78  E-value=6.6e-19  Score=176.71  Aligned_cols=116  Identities=24%  Similarity=0.403  Sum_probs=101.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc--hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||++.......  .+.|.+|+++|++|+|+||++++++|.+.+..||||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            367888999999999999999864 58899999986543322  356889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.+++|.+++...+  .+++..++.|+.||++||+|||+
T Consensus       104 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~  142 (331)
T 4aaa_A          104 EFVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHS  142 (331)
T ss_dssp             ECCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988876544  38999999999999999999975

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.78  E-value=1e-18  Score=172.79  Aligned_cols=115  Identities=23%  Similarity=0.401  Sum_probs=102.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      +.|...+.||+|+||.||+|+. .+++.||||+++... ....++|.+|+++|++++|+||++++++|.+.+..||||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            4588889999999999999985 468899999997544 33457899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++...   .+++.+++.|+.||++||+|||+.
T Consensus       102 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~  138 (303)
T 3a7i_A          102 LGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSE  138 (303)
T ss_dssp             CTTEEHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999998643   489999999999999999999763

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.78  E-value=2.3e-19  Score=183.82  Aligned_cols=124  Identities=25%  Similarity=0.346  Sum_probs=96.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHH-HHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEI-ISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~i-l~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|++.++||+|+||+||+|+.. +++.||||+++...   ....+.+.+|..+ ++.++|+|||+++++|.+.+.+||
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            357889999999999999999964 57889999997543   2233467777776 577899999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|+++|.+.+  .+.+.+++.|+.||++||+|||+      |+|..+|+
T Consensus       117 v~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl  171 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENIL  171 (373)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             EEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEE
Confidence            999999999999997654  38889999999999999999975      55555554

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.78  E-value=8.8e-19  Score=172.60  Aligned_cols=118  Identities=19%  Similarity=0.371  Sum_probs=100.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|++.++||+|+||.||+|+.. +|+.||||+++....  ...+.|.+|+++|++++|+||++++++|.+.+..||||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   81 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence            367889999999999999999864 689999999975432  23467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+. |+|.+++.......+++..+++|+.||++||+|||++
T Consensus        82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  122 (299)
T 2r3i_A           82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH  122 (299)
T ss_dssp             ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            9997 6999999876555689999999999999999999863

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.78  E-value=9.6e-19  Score=171.70  Aligned_cols=115  Identities=28%  Similarity=0.451  Sum_probs=97.6

Q ss_pred             cCCCccc-eeccCCceeEEEEEcC---CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQN-LLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~-~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.+ .||+|+||.||+|++.   +++.||||+++.... ...++|.+|+++|++|+|+||++++++| +.+..+||
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            4455555 8999999999999853   577899999986533 3346799999999999999999999999 56779999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++... +..+++.++++|+.||++||+|||+
T Consensus        88 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~  128 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEE  128 (287)
T ss_dssp             EECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999654 3358999999999999999999975

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.78  E-value=5.9e-20  Score=179.39  Aligned_cols=116  Identities=25%  Similarity=0.457  Sum_probs=99.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC-CeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-~~~~lV~Ey  444 (492)
                      .++|++.+.||+|+||.||+|++ +|+.||||+++..  ...+.|.+|+++|++|+|+||+++++++.+. +..+|||||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   96 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   96 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence            46788999999999999999988 5889999999743  3456899999999999999999999998665 478999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +.+|+|.+++.......+++..+++|+.||++||+|||++
T Consensus        97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  136 (278)
T 1byg_A           97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN  136 (278)
T ss_dssp             CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999765433478999999999999999999763

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.78  E-value=8.8e-19  Score=178.74  Aligned_cols=124  Identities=17%  Similarity=0.308  Sum_probs=105.9

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc--------chHHHHHHHHHHHhC-CCCcccce
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--------GEREFKAEVEIISRI-HHRHLVSL  428 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l-~HpNIv~l  428 (492)
                      ++......++|.+.+.||+|+||.||+|++. +|+.||||+++.....        ..+.|.+|+++|+++ +|+||+++
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~  165 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL  165 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            3444555677999999999999999999974 6899999999754321        134688999999999 89999999


Q ss_pred             eeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       429 ~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +++|...+..|||||||.+|+|.+++....  .+++..++.|+.||++||+|||++
T Consensus       166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~  219 (365)
T 2y7j_A          166 IDSYESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHAN  219 (365)
T ss_dssp             EEEEEBSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999997543  489999999999999999999763

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=179.05  Aligned_cols=121  Identities=27%  Similarity=0.448  Sum_probs=104.6

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe------
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS------  434 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~------  434 (492)
                      ....++|.+.++||+|+||.||+|++ .+|+.||||+++... ...++|.+|+++|+++ +|+||++++++|..      
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~   98 (326)
T 2x7f_A           20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   98 (326)
T ss_dssp             CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CC
T ss_pred             cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccc
Confidence            33457789999999999999999986 468899999997543 3456899999999999 89999999999987      


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+..||||||+.+|+|.+++.......+++..++.|+.||++||+|||+.
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  148 (326)
T 2x7f_A           99 DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH  148 (326)
T ss_dssp             CCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            46789999999999999999865445689999999999999999999863

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.78  E-value=9.9e-19  Score=175.05  Aligned_cols=114  Identities=27%  Similarity=0.434  Sum_probs=97.7

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC--CCCcccceeeEEEeC----Ce
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI--HHRHLVSLVGYCISD----DR  437 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l--~HpNIv~l~g~~~~~----~~  437 (492)
                      ...++|++.++||+|+||.||+|++ +|+.||||++...   ....+.+|.+++..+  +|+||++++++|.+.    +.
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  109 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ  109 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred             ccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence            3456799999999999999999998 5899999998632   344566666666654  999999999999987    78


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .|||||||.+|+|.++++..   .+++.++++|+.||++||+|||++
T Consensus       110 ~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~  153 (337)
T 3mdy_A          110 LYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTE  153 (337)
T ss_dssp             EEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             eEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999754   389999999999999999999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.78  E-value=3.1e-19  Score=175.81  Aligned_cols=121  Identities=25%  Similarity=0.387  Sum_probs=89.0

Q ss_pred             HHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ...++|.+.++||+|+||.||+|+. .+++.||||+++... ....++|.+|+++|++++|+||++++++|...+..+||
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            3457899999999999999999985 368899999997543 23346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc------CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          442 YDYVPNNTLYFHLHG------EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~------~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||+.+|+|.+++..      .....+++..++.|+.||++||+|||++
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  140 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN  140 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999998863      1234589999999999999999999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.78  E-value=3.5e-19  Score=187.00  Aligned_cols=122  Identities=21%  Similarity=0.314  Sum_probs=93.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC-----CeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~~  438 (492)
                      ++|.+.++||+|+||.||+|+.. +|+.||||++.....  ...+.|++|+++|++|+|+|||+|+++|...     +.+
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            57889999999999999999854 688999999964322  2346799999999999999999999999543     568


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||| +|+|++++....  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       133 ~lv~e~~-~~~L~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NIL  188 (458)
T 3rp9_A          133 YVVLEIA-DSDFKKLFRTPV--YLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCL  188 (458)
T ss_dssp             EEEECCC-SEEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EEEEecc-ccchhhhcccCC--CCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEE
Confidence            9999998 578999987653  48999999999999999999964      55665554

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.78  E-value=9.5e-19  Score=175.14  Aligned_cols=117  Identities=31%  Similarity=0.563  Sum_probs=98.9

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCE--EEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGRE--VAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~--VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.++||+|+||.||+|++. +|+.  ||||+++... ....+.|.+|+++|++| +|+||++++++|.+.+..|||
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            56888999999999999999864 4554  4999987433 23446799999999999 999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||+.+|+|.+++...+              ...+++.++++|+.||++||+|||+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~  160 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ  160 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999997543              2358999999999999999999975

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.78  E-value=4.8e-19  Score=174.21  Aligned_cols=115  Identities=23%  Similarity=0.397  Sum_probs=96.8

Q ss_pred             hcCCCccc-eeccCCceeEEEEEc---CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          366 TDGFADQN-LLGEGGFGSVYKGYL---PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       366 ~~~~~~~~-~LG~G~fG~Vy~g~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      .++|.+.+ .||+|+||.||+|.+   .+++.||||+++....  ...++|.+|+++|++|+|+||++++++| +.+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            35677777 999999999999964   2367899999975432  2346799999999999999999999999 667889


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||+.+|+|.+++...+  .+++.+++.|+.||++||+|||+
T Consensus        94 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~  135 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEE  135 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998654  38999999999999999999975

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.78  E-value=5.8e-19  Score=173.53  Aligned_cols=118  Identities=23%  Similarity=0.368  Sum_probs=100.3

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe---------
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS---------  434 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~---------  434 (492)
                      ..++|++.++||+|+||.||+|+. .+|+.||||+++.. ....+.|.+|+++|++++|+||++++++|.+         
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            346788999999999999999985 46899999999642 2334679999999999999999999999876         


Q ss_pred             ----CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 ----DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 ----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                          .+..||||||+.+|+|.++++..+ ..+++.++++|+.||++||+|||++
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~  135 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQ  135 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhC
Confidence                346789999999999999997643 3478889999999999999999763

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.78  E-value=3.9e-19  Score=176.56  Aligned_cols=122  Identities=27%  Similarity=0.428  Sum_probs=96.4

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      ....++|.+.++||+|+||.||+|++.    .++.||||+++....  ...++|.+|+++|++|+|+||++++++|.+.+
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  109 (313)
T 3brb_A           30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS  109 (313)
T ss_dssp             BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred             ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence            334567888999999999999999853    244799999975433  23467999999999999999999999998765


Q ss_pred             e-----EEEEEecCCCCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 R-----RLLIYDYVPNNTLYFHLHGE----GRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 ~-----~~lV~Ey~~~GsL~~~l~~~----~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .     .++||||+.+|+|.+++...    ....+++.++++|+.||++||+|||++
T Consensus       110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  166 (313)
T 3brb_A          110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR  166 (313)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3     49999999999999998532    234589999999999999999999753

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.77  E-value=1.1e-18  Score=176.94  Aligned_cols=116  Identities=26%  Similarity=0.410  Sum_probs=99.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      +.|...+.||+|+||.||+|+. .+|+.||||+++.....   ..++|.+|+++|++|+|+|||+++|+|.+.+..||||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            3478889999999999999985 57889999999754332   2357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||. |+|.+++.... ..+++.+++.|+.||++||+|||++
T Consensus       134 e~~~-g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~  173 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH  173 (348)
T ss_dssp             ECCS-EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9997 67887775432 3589999999999999999999753

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.77  E-value=8.3e-19  Score=191.76  Aligned_cols=116  Identities=24%  Similarity=0.376  Sum_probs=97.8

Q ss_pred             ceeccCCceeEEEEEcC---CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||.||+|.+.   .++.||||+++....  ...++|++|+++|++|+|+|||+|+|+|. .+.++||||||.+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence            47999999999999753   357899999975432  33568999999999999999999999996 4568999999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+|.++|+.++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       454 g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NIL  501 (635)
T 4fl3_A          454 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVL  501 (635)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEE
Confidence            99999997654  48999999999999999999964      55665554

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.77  E-value=1.1e-18  Score=179.74  Aligned_cols=122  Identities=18%  Similarity=0.252  Sum_probs=104.1

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCC--CCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH--HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~--HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||.||+++..+++.||||+++....  ...+.|++|+++|++|+  |+|||+++++|...+.+||||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            45888999999999999999987899999999975432  23467999999999996  599999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      | +.+|+|.++|....  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       136 E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIl  187 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFL  187 (390)
T ss_dssp             E-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEE
T ss_pred             e-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEE
Confidence            9 56889999998654  48899999999999999999975      55555554

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=4.8e-19  Score=181.38  Aligned_cols=123  Identities=24%  Similarity=0.353  Sum_probs=100.7

Q ss_pred             CCCccceeccCCceeEEEEEcC--CC--CEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeEEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYLP--DG--REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLI  441 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~--~g--~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~~lV  441 (492)
                      .|.+.++||+|+||.||+|++.  ++  ..||||+++... ....++|.+|+++|++|+|+||++++++|.+ ++..|||
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3566789999999999999863  22  358999987533 3445689999999999999999999999865 4578999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|.++++... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       170 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  224 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCM  224 (373)
T ss_dssp             EECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEE
Confidence            99999999999997543 358899999999999999999975      55555554

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.77  E-value=1e-18  Score=187.19  Aligned_cols=125  Identities=26%  Similarity=0.362  Sum_probs=106.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|.+.++||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|+++|++++|+||++++++|.+.+.+||||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            56888899999999999999964 68999999996432   233467899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEG--RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~--~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.+|+|.++|....  +..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NIL  321 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVL  321 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEE
Confidence            9999999999987543  3458999999999999999999975      55555554

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.77  E-value=8.7e-19  Score=173.85  Aligned_cols=114  Identities=24%  Similarity=0.303  Sum_probs=93.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEE-----------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI-----------  433 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~-----------  433 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||+++..+....++|.+|+++|++|+|+||+++++++.           
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            357888999999999999999975 48899999998655555678999999999999999999999873           


Q ss_pred             ---eCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          434 ---SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       434 ---~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                         +.+..||||||+. |+|.+++...   .+.+..++.|+.||++||+|||+
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~  138 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG---PLLEEHARLFMYQLLRGLKYIHS  138 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC---CccHHHHHHHHHHHHHHHHHHHh
Confidence               3467899999997 6999998642   48899999999999999999975

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=170.99  Aligned_cols=118  Identities=26%  Similarity=0.421  Sum_probs=97.7

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-----cchHHHHHHHHHHHhCC---CCcccceeeEEEeCC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIH---HRHLVSLVGYCISDD  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~  436 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++....     .....+.+|+++|++|+   |+||++++++|...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            56899999999999999999995 5688999999974321     22356788888877764   999999999998765


Q ss_pred             -----eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          437 -----RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       437 -----~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                           ..+|||||+. |+|.+++.......+++.++++|+.||++||+|||++
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~  139 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN  139 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                 4789999997 6999999876655699999999999999999999753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=172.37  Aligned_cols=117  Identities=26%  Similarity=0.381  Sum_probs=97.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ..++|++.+.||+|+||.||+|++. +|+.||||+++..  ...++|.+|+++|++|+|+||++++++|.+.+..|||||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  104 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME  104 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence            3467899999999999999999864 5899999999753  235679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+|+|.+++.... ..+++..++.|+.||++||+|||+.
T Consensus       105 ~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~  144 (314)
T 3com_A          105 YCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFM  144 (314)
T ss_dssp             CCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999986432 3489999999999999999999863

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.77  E-value=1.7e-18  Score=171.22  Aligned_cols=112  Identities=20%  Similarity=0.305  Sum_probs=97.2

Q ss_pred             cCCCcc-ceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHH-HhCCCCcccceeeEEEe----CCeEE
Q 011175          367 DGFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEII-SRIHHRHLVSLVGYCIS----DDRRL  439 (492)
Q Consensus       367 ~~~~~~-~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il-~~l~HpNIv~l~g~~~~----~~~~~  439 (492)
                      ++|.+. ++||+|+||.||+++. .+++.||||+++.     ...+.+|++++ +.++|+||++++++|..    .+..|
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            456665 7899999999999985 5688999999963     35688899988 55699999999999987    66789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||.+|+|.+++.......+++.+++.|+.||++||+|||+
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  135 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS  135 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987665569999999999999999999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=1.2e-18  Score=171.41  Aligned_cols=115  Identities=23%  Similarity=0.362  Sum_probs=96.7

Q ss_pred             CCccceeccCCceeEEEEEcCC-C---CEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeE-EEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYLPD-G---REVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR-LLIY  442 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~-g---~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~-~lV~  442 (492)
                      |...++||+|+||.||+|++.+ +   ..||||+++.... ...+.|.+|+++|++|+|+||++++++|.+.+.. ++||
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            4556899999999999998532 2   3699999975443 3346799999999999999999999999876665 9999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+.+|+|.+++.... ..+++.+++.|+.||++||+|||++
T Consensus       103 e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~  143 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAEQ  143 (298)
T ss_dssp             CCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999997643 4589999999999999999999753

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.77  E-value=1.1e-18  Score=182.24  Aligned_cols=123  Identities=22%  Similarity=0.291  Sum_probs=103.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC-----Ce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~  437 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++....  ...+.|.+|+++|++|+|+||++++++|...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            36799999999999999999985 4578899999975322  2346799999999999999999999999876     57


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|||||||. |+|.+++....  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NIL  161 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI--FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCL  161 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEEEecCC-cCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeE
Confidence            899999996 69999997643  48999999999999999999975      55655554

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.77  E-value=1.5e-18  Score=171.07  Aligned_cols=116  Identities=24%  Similarity=0.379  Sum_probs=96.8

Q ss_pred             cCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEe-CCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~-~~~~~l  440 (492)
                      ..|++.++||+|+||.||+|++.+    +..||||+++.... ...+.|.+|+++|++++|+||++++++|.+ ++..+|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            357778999999999999998633    22589999875433 334679999999999999999999999765 457799


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.++++... ..+++.+++.|+.||++||+|||+
T Consensus       105 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~  146 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLAS  146 (298)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997543 458999999999999999999975

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.77  E-value=4.5e-19  Score=177.59  Aligned_cols=123  Identities=24%  Similarity=0.402  Sum_probs=101.4

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|.+.++||+|+||.||+|+.. +++.||||+++...... ...+.+|+++|++|+|+||++++++|.+.+..+|||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            57889999999999999999864 68899999997543222 23567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |. |+|.+++...+ ..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        82 ~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl  132 (324)
T 3mtl_A           82 LD-KDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLL  132 (324)
T ss_dssp             CS-EEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEE
T ss_pred             cc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEE
Confidence            97 58988887653 358999999999999999999975      44554443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.76  E-value=1.6e-18  Score=170.46  Aligned_cols=122  Identities=28%  Similarity=0.519  Sum_probs=100.1

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||.||+|++.  ..||||+++.....  ..+.|.+|+++|++++|+||+++++++ ..+..+||||
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e   99 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ   99 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred             ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence            457888999999999999999863  35999999754432  346799999999999999999999965 5567899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|.++++... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       100 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil  152 (289)
T 3og7_A          100 WCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIF  152 (289)
T ss_dssp             CCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEE
Confidence            999999999996543 358999999999999999999975      45555544

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=174.52  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=99.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEe--------CC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCIS--------DD  436 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~--------~~  436 (492)
                      .+|.+.++||+|+||.||+|++ .+|+.||||++........+.|.+|+++|+++. |+||++++++|..        ..
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            5688899999999999999995 468899999997655555678999999999996 9999999999953        33


Q ss_pred             eEEEEEecCCCCCHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          437 RRLLIYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~-~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      .++|||||+. |+|.+++.. ..+..+++.++++|+.||++||+|||+..
T Consensus       108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  156 (337)
T 3ll6_A          108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK  156 (337)
T ss_dssp             EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4789999995 789888864 22335899999999999999999999865

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.76  E-value=1.1e-18  Score=176.42  Aligned_cols=118  Identities=24%  Similarity=0.400  Sum_probs=94.4

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-----chHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-----GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-----~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      ...++|.+.++||+|+||.||+|+.. +|+.||||+++.....     ..+.+.+|+++|++|+|+||++++++|.+.+.
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            34577999999999999999999964 5889999999743221     12478999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+||||||.+ +|.+++.... ..+++.+++.|+.||++||+|||+
T Consensus        87 ~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  130 (346)
T 1ua2_A           87 ISLVFDFMET-DLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQ  130 (346)
T ss_dssp             CEEEEECCSE-EHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCC-CHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999986 7888886543 358888999999999999999975

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.76  E-value=6.1e-19  Score=176.62  Aligned_cols=123  Identities=25%  Similarity=0.379  Sum_probs=100.3

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCE----EEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGRE----VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~----VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|.+.++||+|+||.||+|++. +++.    ||+|++.... ....+.|.+|+.+|++++|+||++++++|. ++..+|
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            56888999999999999999853 3443    7888875433 233457889999999999999999999986 567899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|.+++...+ ..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus        92 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil  147 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVL  147 (325)
T ss_dssp             EEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEE
T ss_pred             EEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEE
Confidence            999999999999997642 358889999999999999999975      55555554

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.76  E-value=1.8e-18  Score=169.03  Aligned_cols=116  Identities=27%  Similarity=0.413  Sum_probs=97.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|.+.++||+|+||.||+|++.+    ++.||||+++.... ...+.|.+|+++|++|+|+||+++++++.+ +..|+
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence            3568889999999999999998533    23599999975433 345679999999999999999999999764 56789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.+++.... ..+++..++.|+.||++||+|||+
T Consensus        90 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~  131 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLES  131 (281)
T ss_dssp             EEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997543 348999999999999999999975

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.76  E-value=3.7e-18  Score=170.67  Aligned_cols=117  Identities=19%  Similarity=0.272  Sum_probs=101.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEe--CCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCIS--DDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~--~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|+. .+++.||||+++.   ...+.|.+|+++|++|+ |+||+++++++.+  ....+|||
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            5688999999999999999984 5789999999974   33568999999999997 9999999999998  66789999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||+.+++|.+++..     +.+.+++.|+.||++||+|||+      |+|..+|+
T Consensus       113 e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil  162 (330)
T 3nsz_A          113 EHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM  162 (330)
T ss_dssp             ECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             eccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE
Confidence            99999999988843     7889999999999999999975      45554444

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.76  E-value=1.1e-18  Score=174.11  Aligned_cols=119  Identities=25%  Similarity=0.402  Sum_probs=98.9

Q ss_pred             HhcCCCccceeccCCceeEEEEEc--CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhC---CCCcccceeeEEE----
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGG--QGEREFKAEVEIISRI---HHRHLVSLVGYCI----  433 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~--~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l---~HpNIv~l~g~~~----  433 (492)
                      ..++|.+.+.||+|+||.||+|+.  .+|+.||||+++....  .....+.+|+++|++|   +|+||++++++|.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            457899999999999999999986  4678899999964322  2234677888887766   8999999999998    


Q ss_pred             -eCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          434 -SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       434 -~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       ..+..+|||||+. |+|.+++.......+++..++.|+.||++||+|||++
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  139 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH  139 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence             4567899999998 6999999876555689999999999999999999763

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.76  E-value=6.5e-19  Score=174.89  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=93.4

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc------chHHHHHHHHHHHhC----CCCcccceeeE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRI----HHRHLVSLVGY  431 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l----~HpNIv~l~g~  431 (492)
                      ....++|.+.++||+|+||.||+|+. .+|+.||||+++.....      ....+.+|+++|+++    +|+||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            34457899999999999999999985 46889999999754321      223577899999998    89999999999


Q ss_pred             EEeCCeEEEEEec-CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          432 CISDDRRLLIYDY-VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       432 ~~~~~~~~lV~Ey-~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |.+.+..++|||| +.+++|.+++.+++  .+++.++++|+.||++||+|||+
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~  157 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHS  157 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 78999999997644  38999999999999999999975

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.76  E-value=7.3e-19  Score=178.01  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=100.0

Q ss_pred             cCCCccceeccCCceeEEEEEcCC---------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccc----------
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD---------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS----------  427 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~---------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~----------  427 (492)
                      ++|.+.++||+|+||.||+|++..         ++.||||+++..     +.|.+|+++|++|+|+|||+          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            568889999999999999998653         788999998743     46889999999999999988          


Q ss_pred             -----eeeEEEe-CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          428 -----LVGYCIS-DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       428 -----l~g~~~~-~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                           +++++.. ++..||||||| +|+|.+++.......+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl  191 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF  191 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE
T ss_pred             cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence                 6788887 77889999999 9999999987534569999999999999999999975      55555554

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.75  E-value=1.4e-18  Score=176.82  Aligned_cols=124  Identities=18%  Similarity=0.214  Sum_probs=98.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC------CCEEEEEEcccCCCcc-----------hHHHHHHHHHHHhCCCCcccce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQG-----------EREFKAEVEIISRIHHRHLVSL  428 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~------g~~VAVK~l~~~~~~~-----------~~~f~~Ei~il~~l~HpNIv~l  428 (492)
                      .++|.+.++||+|+||.||+|++.+      ++.||||++.......           ...+++|+.++++++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            3578899999999999999998754      4689999987543211           1234566777888899999999


Q ss_pred             eeEEEeC----CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          429 VGYCISD----DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       429 ~g~~~~~----~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|+|.+.    ...||||||| +|+|.+++.... ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nil  184 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLL  184 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEE
Confidence            9999875    4579999999 999999997643 358999999999999999999974      55665554

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.75  E-value=3.1e-18  Score=175.56  Aligned_cols=116  Identities=22%  Similarity=0.350  Sum_probs=92.6

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC------
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD------  435 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------  435 (492)
                      ....++|.+.++||+|+||.||+|+. .+|+.||||++....    +.+.+|+++|++|+|+|||+++++|...      
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            34557899999999999999999985 578999999986432    2344799999999999999999999543      


Q ss_pred             --------------------------------CeEEEEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHh
Q 011175          436 --------------------------------DRRLLIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYL  481 (492)
Q Consensus       436 --------------------------------~~~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YL  481 (492)
                                                      ..++||||||. |+|.++|..  .....+++..++.|+.||++||+||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  157 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI  157 (383)
T ss_dssp             -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                            34789999998 577776653  2234589999999999999999999


Q ss_pred             hc
Q 011175          482 HE  483 (492)
Q Consensus       482 H~  483 (492)
                      |+
T Consensus       158 H~  159 (383)
T 3eb0_A          158 HS  159 (383)
T ss_dssp             HT
T ss_pred             HH
Confidence            75

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.75  E-value=2.3e-18  Score=176.20  Aligned_cols=118  Identities=19%  Similarity=0.286  Sum_probs=98.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC--------CCcccceeeEEE---
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH--------HRHLVSLVGYCI---  433 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~--------HpNIv~l~g~~~---  433 (492)
                      .++|.+.++||+|+||.||+|+. .+++.||||+++.. ....+.+.+|+++|++|+        |+||++++++|.   
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            36799999999999999999985 46889999999743 233467899999999985        788999999998   


Q ss_pred             -eCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          434 -SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       434 -~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                       +....||||||| +|+|.+++.......+++..+++|+.||++||+|||+++
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~  166 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC  166 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence             455789999999 667777776555456999999999999999999999753

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.75  E-value=5.3e-18  Score=166.74  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++...  ..++|.+|++++++| +|.||+++++++.+.+..+||||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e   86 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   86 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence            35688999999999999999984 578899999986432  334688999999999 89999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |+ +|+|.+++...+ ..+++.++++|+.||++||+|||+
T Consensus        87 ~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~  124 (298)
T 1csn_A           87 LL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHE  124 (298)
T ss_dssp             CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99 999999998653 348999999999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.75  E-value=1.2e-18  Score=173.29  Aligned_cols=119  Identities=16%  Similarity=0.235  Sum_probs=102.7

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCC--CCcccceeeEEEeCCeE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH--HRHLVSLVGYCISDDRR  438 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~--HpNIv~l~g~~~~~~~~  438 (492)
                      ....++|.+.++||+|+||.||+++..+++.||||+++....  ...+.|.+|+++|++|+  |+||++++++|.+.+..
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~  103 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  103 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence            334567899999999999999999988899999999975432  23467999999999997  59999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||| +.+|+|.+++....  .+++.+++.|+.||++||+|||+.
T Consensus       104 ~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~  146 (313)
T 3cek_A          104 YMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQH  146 (313)
T ss_dssp             EEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99999 56889999998654  489999999999999999999763

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.75  E-value=4.2e-18  Score=174.82  Aligned_cols=123  Identities=21%  Similarity=0.333  Sum_probs=95.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCC-CCcccceeeEEEeCC--eE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDD--RR  438 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~--~~  438 (492)
                      ..++|++.++||+|+||.||+|+. .+|+.||||++....  ....+.+.+|+.+|++++ |+||++++++|...+  .+
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            457899999999999999999985 468999999986432  233457889999999997 999999999998654  68


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||||. |+|..+++..   .+++..+..|+.||++||+|||+      |+|..+|+
T Consensus        87 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl  141 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNIL  141 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeE
Confidence            99999997 6899988763   48999999999999999999974      55665554

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.75  E-value=4.5e-18  Score=170.71  Aligned_cols=123  Identities=25%  Similarity=0.442  Sum_probs=101.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCE----EEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGRE----VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~----VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||.||+|++. +++.    ||+|.++... ....++|.+|+++|++++|+||++++++|.+.+ .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            56888999999999999999853 4443    5778775433 344578999999999999999999999998754 889


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||+.+|+|.+++.... ..+++..+++|+.||++||+|||+      |+|..+|+
T Consensus        94 v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl  149 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVL  149 (327)
T ss_dssp             EECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEE
Confidence            999999999999997643 348999999999999999999975      55555554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.75  E-value=4.5e-18  Score=171.93  Aligned_cols=124  Identities=21%  Similarity=0.342  Sum_probs=101.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe--------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS--------  434 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--------  434 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||++.....  .....+.+|+++|++|+|+||++++++|.+        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            36788999999999999999986 5689999999864432  234578999999999999999999999987        


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+..|||||||.+ +|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl  156 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVL  156 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CceEEEEEeccCC-CHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEE
Confidence            3468999999975 7777776543 348999999999999999999975      55555554

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.75  E-value=6.6e-18  Score=169.25  Aligned_cols=112  Identities=32%  Similarity=0.563  Sum_probs=92.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHH--HHhCCCCcccceeeEEEe-----CCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLVGYCIS-----DDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~i--l~~l~HpNIv~l~g~~~~-----~~~~  438 (492)
                      .++|++.++||+|+||.||+|++ +++.||||+++..   ...++.+|.++  +..++|+||+++++++..     ...+
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            46788999999999999999987 7899999999742   23455555555  445899999999987653     2256


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |||||||.+|+|.+++....   +++..+++|+.||++||+|||+.
T Consensus        88 ~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~  130 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTE  130 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999997653   58999999999999999999976

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.75  E-value=2.3e-18  Score=189.51  Aligned_cols=125  Identities=25%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccC---CCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG---GGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~  439 (492)
                      ..++|.+.++||+|+||.||+|++. +++.||||+++..   .....+.+.+|+++|.++ +|+||++|++++.+.+.+|
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            3567899999999999999999864 5788999999742   223456788999999988 7999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|+++|+..++  +++.+++.|+.||+.||+|||+      |+|..+|+
T Consensus       419 lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NIL  474 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVGR--FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVM  474 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEE
T ss_pred             EEEeCcCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEE
Confidence            99999999999999986543  8999999999999999999964      66666665

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.75  E-value=3.8e-18  Score=167.13  Aligned_cols=118  Identities=18%  Similarity=0.219  Sum_probs=95.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc-h-HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-E-REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~-~-~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++...... . +.+.+|..+++.++|+||++++++|.+.+..+|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            46788999999999999999985 568899999997543322 2 33555555688899999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          443 DYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       443 Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||+. |+|.+++..  .....+++..+++|+.||++||+|||++
T Consensus        86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  128 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK  128 (290)
T ss_dssp             ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            9997 588777643  2234589999999999999999999974

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.75  E-value=3e-18  Score=174.92  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++.....  ...+.+.+|+++|++|+|+||++++++|...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            36788899999999999999986 4689999999964322  23457899999999999999999999998653      


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+||||||| +++|.+++...   .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIl  160 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA  160 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             eEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEE
Confidence            459999999 88999998763   38999999999999999999975      45554443

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=175.13  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=95.7

Q ss_pred             cCCCccceeccCCceeEEEEEcC----CCCEEEEEEcccCCCc-----------chHHHHHHHHHHHhCCCCcccceeeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQ-----------GEREFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~----~g~~VAVK~l~~~~~~-----------~~~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      ++|.+.++||+|+||.||+|++.    ++..||||++......           ..+.|.+|+.++++++|+||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56888999999999999999974    5678999998754321           12357789999999999999999999


Q ss_pred             EEe----CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          432 CIS----DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       432 ~~~----~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |.+    .+..||||||| +|+|.+++...+  .+++.++++|+.||++||+|||+      |+|..+|+
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  183 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLL  183 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEE
Confidence            998    77889999999 999999987654  58999999999999999999976      45554444

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.74  E-value=5.6e-19  Score=180.74  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=97.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHH---HHHHhCCCCccccee-------eE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEV---EIISRIHHRHLVSLV-------GY  431 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei---~il~~l~HpNIv~l~-------g~  431 (492)
                      .++|.+.++||+|+||.||+|++ .+|+.||||+++..   .....+.|.+|+   ++|++++|+|||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            35688889999999999999996 46899999999743   233456899999   556666899999998       67


Q ss_pred             EEeCCe-----------------EEEEEecCCCCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHhhc------
Q 011175          432 CISDDR-----------------RLLIYDYVPNNTLYFHLHGEGR-----PVLDWATRVKIAAGAARGLAYLHE------  483 (492)
Q Consensus       432 ~~~~~~-----------------~~lV~Ey~~~GsL~~~l~~~~~-----~~l~~~~~l~ia~qIa~gL~YLH~------  483 (492)
                      +.+.+.                 .||||||| +|+|.+++...++     ..+.|..+++|+.||++||+|||+      
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr  230 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  230 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            665532                 78999999 6899999975321     123368888999999999999965      


Q ss_pred             CCCCceee
Q 011175          484 DCKYLIFC  491 (492)
Q Consensus       484 ~~k~~ii~  491 (492)
                      |+|..+|+
T Consensus       231 Dikp~NIl  238 (377)
T 3byv_A          231 YLRPVDIV  238 (377)
T ss_dssp             CCCGGGEE
T ss_pred             CCCHHHEE
Confidence            55555554

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.74  E-value=4.2e-18  Score=170.13  Aligned_cols=124  Identities=19%  Similarity=0.296  Sum_probs=104.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc--CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc------ccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH------LVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~--~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN------Iv~l~g~~~~~~~  437 (492)
                      .++|++.++||+|+||.||+|+.  .+|+.||||+++.. ....+.+.+|+++|++|+|.|      |++++++|.+.+.
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            35788999999999999999985  36789999999743 233467899999999987654      9999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+|||||+ +|+|.+++...+...+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil  150 (339)
T 1z57_A           92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENIL  150 (339)
T ss_dssp             EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEE
Confidence            99999999 8999999987765568999999999999999999975      45555544

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.74  E-value=4.3e-19  Score=176.45  Aligned_cols=118  Identities=30%  Similarity=0.463  Sum_probs=101.5

Q ss_pred             HHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          363 VKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       363 ~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ....++|++.++||+|+||.||+|++.+  .||||+++...  ....+.|.+|+++|++++|+||++++|+|.+.+..+|
T Consensus        29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~i  106 (319)
T 2y4i_B           29 DIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAI  106 (319)
T ss_dssp             SSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEE
T ss_pred             cCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEE
Confidence            3345778899999999999999998743  59999997543  2234578899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||+.+|+|.+++...+ ..+++.++++|+.||++||+|||+
T Consensus       107 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~  148 (319)
T 2y4i_B          107 ITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHA  148 (319)
T ss_dssp             ECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997543 358999999999999999999975

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.74  E-value=2.9e-18  Score=180.72  Aligned_cols=121  Identities=21%  Similarity=0.267  Sum_probs=99.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC--CCcchHHHHHHHHHHHhCCCCcccceeeEEEeC------C
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISD------D  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------~  436 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++..  .....+++.+|+++|++++|+|||+|+++|...      +
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46799999999999999999985 46889999999743  223346799999999999999999999999754      3


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..|||||||.++ |.+++..    .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       141 ~~~lv~E~~~~~-l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIl  196 (464)
T 3ttj_A          141 DVYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV  196 (464)
T ss_dssp             EEEEEEECCSEE-HHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eEEEEEeCCCCC-HHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEE
Confidence            569999999765 6666643    28999999999999999999975      55665554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.74  E-value=2.1e-18  Score=190.14  Aligned_cols=121  Identities=22%  Similarity=0.344  Sum_probs=100.2

Q ss_pred             cCCCccceeccCCceeEEEEEcC--CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-----E
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----R  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~--~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-----~  438 (492)
                      ++|.+.++||+|+||.||+|++.  +|+.||||++..... ...+.|.+|+++|++|+|+|||+++++|.+.+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            67999999999999999999864  588999999875433 334579999999999999999999999997665     7


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||||.+|+|.+++..    .++|.++++|+.||++||+|||+      |+|..+|+
T Consensus       160 ~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIl  214 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIM  214 (681)
T ss_dssp             EEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeE
Confidence            999999999999887753    48999999999999999999975      45555554

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.74  E-value=2.9e-18  Score=168.05  Aligned_cols=115  Identities=26%  Similarity=0.403  Sum_probs=90.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC--CCC--EEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP--DGR--EVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~--~g~--~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|++.++||+|+||.||+|++.  +++  .||||+++...   ....++|.+|+++|++|+|+||+++++++.+.+ .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            56888999999999999999853  233  68999997542   233468999999999999999999999998654 88


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +||||+.+|+|.+++.... ..+++.++++|+.||++||+|||+
T Consensus        97 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~  139 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLES  139 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999987542 348899999999999999999975

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.74  E-value=8.3e-18  Score=169.42  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             hcCCCcc-ceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEE
Q 011175          366 TDGFADQ-NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRL  439 (492)
Q Consensus       366 ~~~~~~~-~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~  439 (492)
                      .++|.+. ++||+|+||.||+|+.. +|+.||||+++..    .+...++...++.++|+||++++++|..    .+..|
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            4567774 57999999999999864 6899999999642    2222233344667799999999999986    44579


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||||.+|+|++++.......+++.++++|+.||++||+|||++
T Consensus       103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~  147 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH  147 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999876656799999999999999999999753

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.74  E-value=7.9e-18  Score=184.66  Aligned_cols=126  Identities=25%  Similarity=0.282  Sum_probs=104.2

Q ss_pred             HHhcCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          364 KATDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       364 ~~~~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      ...++|.+.++||+|+||.||+|++..    +..||||+++..... ..+.|.+|+.+|++++|+||++++|+|. ++..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            345678889999999999999998632    457999998754333 3467999999999999999999999984 5678


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||||.+|+|.+++...+ ..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NIL  523 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL  523 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEE
Confidence            99999999999999997643 348999999999999999999975      55555554

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.74  E-value=1.1e-17  Score=174.52  Aligned_cols=124  Identities=18%  Similarity=0.233  Sum_probs=104.2

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhC------CCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRI------HHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l------~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|++.++||+|+||.||+|+.. +++.||||+++.. ....+++.+|+++|++|      +|.||++++++|...+.+
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            356889999999999999999854 5889999999742 22345788899888887      567999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +||||||. |+|++++.......+++..+++|+.||++||+|||      +|+|..+|+
T Consensus       175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIL  232 (429)
T 3kvw_A          175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENIL  232 (429)
T ss_dssp             EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEE
T ss_pred             EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE
Confidence            99999996 68999998766566999999999999999999996      466666665

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.73  E-value=9.2e-18  Score=170.79  Aligned_cols=122  Identities=22%  Similarity=0.298  Sum_probs=101.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeC-----CeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~~  438 (492)
                      .++|.+.++||+|+||.||+|+. .+++.||||+++..... ..+.|.+|+++|++|+|+||++++++|...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            35789999999999999999985 46788999999754333 336799999999999999999999999764     368


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||+. |+|.+++...   .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       106 ~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl  160 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLL  160 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEE
Confidence            99999997 5899988754   38999999999999999999975      45555544

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.73  E-value=9e-18  Score=169.43  Aligned_cols=114  Identities=20%  Similarity=0.278  Sum_probs=97.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeC-----CeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~~  438 (492)
                      .++|.+.++||+|+||.||+|+.. +|+.||||+++..... ...+|.+|+++|++|+|+||+++++++...     +..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            367889999999999999999864 5889999999754332 345789999999999999999999998764     678


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||+. |+|.+++...   .+++..++.|+.||++||+|||+
T Consensus        90 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~  130 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHG  130 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999997 6899988753   48999999999999999999975

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.73  E-value=1e-17  Score=171.05  Aligned_cols=121  Identities=18%  Similarity=0.228  Sum_probs=100.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++....  ...+.+.+|+++|++++|+||++++++|...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            46789999999999999999985 4688999999975332  23457899999999999999999999998665      


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..|||||||. |+|.+++..    .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl  159 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV  159 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEE
Confidence            6899999997 478888753    28899999999999999999975      55555554

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.73  E-value=9.8e-18  Score=173.16  Aligned_cols=120  Identities=23%  Similarity=0.343  Sum_probs=90.0

Q ss_pred             CCc-cceeccCCceeEEEEEcC---CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEEE
Q 011175          369 FAD-QNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIY  442 (492)
Q Consensus       369 ~~~-~~~LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV~  442 (492)
                      |.+ .++||+|+||.||+|++.   +++.||||+++..  ...+.+.+|+++|++|+|+|||+++++|..  .+.+||||
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence            544 458999999999999964   4778999999743  233578999999999999999999999975  66889999


Q ss_pred             ecCCCCCHHHHHhcC-------CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGE-------GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~-------~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||+. |+|.+++...       ....+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       100 e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIl  160 (405)
T 3rgf_A          100 DYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANIL  160 (405)
T ss_dssp             ECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeE
Confidence            9997 5787776421       12248999999999999999999975      55555554

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.73  E-value=4.3e-18  Score=177.03  Aligned_cols=120  Identities=30%  Similarity=0.419  Sum_probs=94.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC----C--eEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD----D--RRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~----~--~~~  439 (492)
                      .+|.+.++||+|+||.||+|++. +|+.||||++....    +.+.+|+++|++|+|+|||+|+++|...    +  .++
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            35788899999999999999974 58999999986432    2345799999999999999999998642    2  367


Q ss_pred             EEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+ +|++++..  ..+..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIL  188 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLL  188 (420)
T ss_dssp             EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEE
T ss_pred             eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEE
Confidence            99999986 56555432  223458999999999999999999975      55555554

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.73  E-value=4.7e-18  Score=173.58  Aligned_cols=122  Identities=19%  Similarity=0.279  Sum_probs=93.7

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC------C
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD------D  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------~  436 (492)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||+++....  ...+.+.+|+++|++|+|+||++++++|...      +
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            36789999999999999999984 5688999999965322  2346789999999999999999999999754      5


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..||||||+ +++|.+++..   ..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl  164 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA  164 (367)
T ss_dssp             CCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEE
Confidence            679999999 7899888864   248999999999999999999975      45555544

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.72  E-value=1.6e-17  Score=168.10  Aligned_cols=121  Identities=22%  Similarity=0.263  Sum_probs=88.2

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe-
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-  437 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~-  437 (492)
                      ++.....++|.+.++||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++.|++++|+||++++++|...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            45667778999999999999999999986 468899999986432 334567889999999999999999999976443 


Q ss_pred             ------EEEEEecCCCCCHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          438 ------RLLIYDYVPNNTLYFHLHG--EGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       438 ------~~lV~Ey~~~GsL~~~l~~--~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                            .+||||||.++ |...+..  .....+.+..+..|+.||++||+|||
T Consensus        95 ~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH  146 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH  146 (360)
T ss_dssp             CTTCEEEEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccceeEEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh
Confidence                  78999999865 5443332  23345889999999999999999999

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.72  E-value=4.9e-18  Score=169.75  Aligned_cols=128  Identities=22%  Similarity=0.274  Sum_probs=105.0

Q ss_pred             HHHHhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc------chHHHHHHHHHHHhCC--CCcccceeeEE
Q 011175          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIH--HRHLVSLVGYC  432 (492)
Q Consensus       362 l~~~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~--HpNIv~l~g~~  432 (492)
                      .....++|.+.++||+|+||.||+|+. .+|+.||||+++.....      ..+.|.+|+++|++++  |+||++++++|
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~  117 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF  117 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence            334557799999999999999999985 56889999999754321      2246788999999996  59999999999


Q ss_pred             EeCCeEEEEEecCCC-CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          433 ISDDRRLLIYDYVPN-NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       433 ~~~~~~~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+.+..+|||||+.+ ++|.+++..++  .+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       118 ~~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl  181 (320)
T 3a99_A          118 ERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL  181 (320)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             ecCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEE
Confidence            999999999999986 89999987643  48999999999999999999965      55555544

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.72  E-value=2.1e-17  Score=165.27  Aligned_cols=117  Identities=15%  Similarity=0.246  Sum_probs=95.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCc-chHHHHHHHH-HHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~-il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.+.||+|+||.||+|+.. +|+.||||+++..... ..+++.+|+. +++.++|+||++++|+|.+.+..+||||
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            56888899999999999999964 6889999999754332 3345666766 7777899999999999999999999999


Q ss_pred             cCCCCCHHHHHhc---CCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHG---EGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~---~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |+.+ +|.+++..   .....+++..+++|+.||++||+|||++
T Consensus       102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  144 (327)
T 3aln_A          102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN  144 (327)
T ss_dssp             CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc
Confidence            9985 77666642   2344689999999999999999999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.72  E-value=3.6e-17  Score=173.10  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC-CcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||.||+|++ .+++.||||+++....  ..+|.+|+++|+.|+| .+|..+..++.+.+..|||||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            36789999999999999999985 5689999998875432  3468899999999987 556666667778889999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      || +|+|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        84 ~~-g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NIL  135 (483)
T 3sv0_A           84 LL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFL  135 (483)
T ss_dssp             CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CC-CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEE
Confidence            99 999999997543 348999999999999999999974      56665554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.72  E-value=1.6e-17  Score=169.59  Aligned_cols=121  Identities=18%  Similarity=0.257  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCeE----
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR----  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~----  438 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||+++.....  ..+.|.+|+++|++++|+||++++++|...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            46788899999999999999985 46889999999754322  246799999999999999999999999877655    


Q ss_pred             --EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          439 --LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       439 --~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                        ||||||+. |+|.+++..    .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl  176 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLA  176 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             eEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeE
Confidence              99999997 688877742    28999999999999999999975      45555544

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=164.37  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=87.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcc-h-HHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-E-REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~-~-~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      .++|.+.+.||+|+||.||+|++. +|+.||||+++...... . +.+.++..+++.++|+||++++++|.+.+..||||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            467888999999999999999964 68999999997554322 2 33455556788889999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+ ++.+..++.. ....+++..+++|+.||++||+|||+
T Consensus       104 e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~  142 (318)
T 2dyl_A          104 ELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLKE  142 (318)
T ss_dssp             CCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999 4555444432 22358999999999999999999996

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.71  E-value=1.2e-17  Score=169.63  Aligned_cols=116  Identities=16%  Similarity=0.250  Sum_probs=99.9

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-----------CCcccceeeEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----------HRHLVSLVGYCIS  434 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----------HpNIv~l~g~~~~  434 (492)
                      ++|.+.++||+|+||.||+|+. .+|+.||||+++.. ....+.+.+|+++|++++           |+||++++++|..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5788999999999999999985 56889999999742 233467899999999886           8899999999986


Q ss_pred             CC----eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          435 DD----RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       435 ~~----~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+    ..+|||||+ +|+|.+++.......+++..+++|+.||++||+|||++
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~  150 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR  150 (373)
T ss_dssp             EETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            54    789999999 99999999875555689999999999999999999985

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.71  E-value=4.7e-17  Score=159.77  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=100.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEE-EeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC-ISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~-~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||.||+|+. .+|+.||||++....  ..++|.+|++++++++|.|++..+++| .+.+..+||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            46789999999999999999995 578999999987543  234799999999999998877777666 55677899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+ +|+|.+++...+ ..+++.++++|+.||++||+|||+      |+|..+|+
T Consensus        86 ~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl  137 (296)
T 3uzp_A           86 LL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL  137 (296)
T ss_dssp             CC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             ec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeE
Confidence            99 999999997443 348999999999999999999975      45555443

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.71  E-value=4.2e-17  Score=159.94  Aligned_cols=123  Identities=20%  Similarity=0.291  Sum_probs=97.2

Q ss_pred             HhcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEE-EeCCeEEEEE
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC-ISDDRRLLIY  442 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~-~~~~~~~lV~  442 (492)
                      ..++|.+.++||+|+||.||+|+. .+++.||||++....  ..++|.+|++++++++|.|++.++++| .+.+..+|||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            447799999999999999999985 578899999876432  234688999999999988887777766 5677889999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||+ +|+|.+++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        85 e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl  137 (296)
T 4hgt_A           85 ELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL  137 (296)
T ss_dssp             ECC-CCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             Ecc-CCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHee
Confidence            999 999999987543 248999999999999999999975      45554443

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.71  E-value=2.8e-17  Score=165.37  Aligned_cols=116  Identities=18%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CC-CEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc------ccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DG-REVAIKQLKIGGGQGEREFKAEVEIISRIHHRH------LVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g-~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN------Iv~l~g~~~~~~~  437 (492)
                      .++|.+.++||+|+||.||+|+.. ++ +.||||+++.. ....+.+.+|+++|++|+|.|      |+.+++++...+.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            367899999999999999999853 34 68999999742 233467889999999997766      9999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+|||||+ +|+|.+++.......+++.++++|+.||++||+|||+
T Consensus        97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~  141 (355)
T 2eu9_A           97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHE  141 (355)
T ss_dssp             EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 7778778776655569999999999999999999975

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.70  E-value=2.3e-17  Score=166.96  Aligned_cols=113  Identities=18%  Similarity=0.273  Sum_probs=95.6

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCCe------
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDR------  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~------  437 (492)
                      ++|...+.||+|+||.||+|+. .+|+.||||+++.....  ..+.|.+|+++|++|+|+||++++++|...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            5688899999999999999986 46889999999754322  24579999999999999999999999987654      


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .||||||+. |+|.+++..    .+++.+++.|+.||++||+|||++
T Consensus       104 ~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~  145 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSA  145 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            499999997 688777642    389999999999999999999753

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.70  E-value=2.8e-17  Score=169.41  Aligned_cols=121  Identities=25%  Similarity=0.375  Sum_probs=94.5

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCe------EEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR------RLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~------~~l  440 (492)
                      .+|.+.++||+|+||.||+|++.++..||||++....    +.+.+|+++|++|+|+|||+|+++|...+.      ++|
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence            4688899999999999999998777779999886432    223479999999999999999999976443      789


Q ss_pred             EEecCCCCCHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLH-GEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~-~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.++.+..+.+ ...+..+++..++.|+.||++||+|||+      |+|..+|+
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nil  173 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLL  173 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEE
Confidence            999998765443332 1223458999999999999999999975      55555554

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.70  E-value=5.8e-17  Score=166.03  Aligned_cols=116  Identities=23%  Similarity=0.310  Sum_probs=98.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CC-----cccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HR-----HLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-Hp-----NIv~l~g~~~~~~~~  438 (492)
                      .++|.+.++||+|+||.||+|+.. +++.||||+++.. ....+++.+|+++|+.++ |.     ||++++++|...+..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            467999999999999999999854 6788999999742 223457888999998885 55     499999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||+. |+|.+++.......+++..++.|+.||++||+|||.
T Consensus       132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~  175 (382)
T 2vx3_A          132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT  175 (382)
T ss_dssp             EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred             EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999996 599999987655568999999999999999999984

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.69  E-value=4.5e-17  Score=170.05  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             CCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecCC
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      .|...++||+|+||+||++...+|+.||||++...   ..+.+.+|+++|+++ +|+|||++++++.+.+..|||||||.
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            34556889999999997666558999999998642   245688999999986 89999999999999999999999995


Q ss_pred             CCCHHHHHhcCCCCC-----CCHHHHHHHHHHHHHHHHHhhc
Q 011175          447 NNTLYFHLHGEGRPV-----LDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~-----l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                       |+|.+++.......     ..+..+++|+.||++||+|||+
T Consensus        93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~  133 (434)
T 2rio_A           93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS  133 (434)
T ss_dssp             -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence             69999997643211     1233457899999999999975

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.69  E-value=9e-18  Score=182.90  Aligned_cols=117  Identities=26%  Similarity=0.323  Sum_probs=98.4

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEe------CCeE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS------DDRR  438 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~------~~~~  438 (492)
                      ++|.+.++||+|+||.||+|+. .+|+.||||+++.... ...+.|.+|+++|++|+|+||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6799999999999999999986 4688999999975432 334679999999999999999999999765      6677


Q ss_pred             EEEEecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEG-RPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~-~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||||.+|+|.+++.... ...+++..++.|+.||++||+|||+
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs  139 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE  139 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997643 2358888999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.68  E-value=5e-17  Score=169.68  Aligned_cols=120  Identities=18%  Similarity=0.181  Sum_probs=96.2

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .+|...++||+|+||.||.....+|+.||||++....   ...+.+|+++|+++ +|+|||++++++.+.+..|||||||
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence            4588889999999999655444488999999996432   23467899999999 7999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      . |+|.+++..... .+.+..++.|+.||++||+|||+      |+|..+|+
T Consensus       101 ~-g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIl  150 (432)
T 3p23_A          101 A-ATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNIL  150 (432)
T ss_dssp             S-EEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEE
T ss_pred             C-CCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEE
Confidence            6 699999976543 24445567899999999999975      55555554

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.68  E-value=2.5e-17  Score=168.06  Aligned_cols=123  Identities=12%  Similarity=-0.000  Sum_probs=84.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhC--CCCccccee-------eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRI--HHRHLVSLV-------GYCI  433 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l--~HpNIv~l~-------g~~~  433 (492)
                      .+|.+.++||+|+||.||+|++ .+|+.||||+++....   ...+.|++|+++++.|  +|+||++++       +++.
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            3478889999999999999995 4688999999986543   2235678885555444  699977754       5555


Q ss_pred             eC-----------------CeEEEEEecCCCCCHHHHHhcCCCCCCCHHHH------HHHHHHHHHHHHHhhc------C
Q 011175          434 SD-----------------DRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR------VKIAAGAARGLAYLHE------D  484 (492)
Q Consensus       434 ~~-----------------~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~------l~ia~qIa~gL~YLH~------~  484 (492)
                      ..                 +.+|||||||. |+|.+++...++ .+.+..+      +.|+.||++||+|||+      |
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            43                 33799999999 899999975432 2455555      7888999999999974      5


Q ss_pred             CCCceee
Q 011175          485 CKYLIFC  491 (492)
Q Consensus       485 ~k~~ii~  491 (492)
                      +|..+|+
T Consensus       220 ikp~NIl  226 (371)
T 3q60_A          220 FTPDNLF  226 (371)
T ss_dssp             CSGGGEE
T ss_pred             CCHHHEE
Confidence            5555554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.64  E-value=2e-16  Score=169.66  Aligned_cols=112  Identities=15%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             CccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc--------chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ...++||+|+||.||+|.+ .++.+++|++......        ..+.|.+|+++|++|+|+||+++..++.+.+..|||
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3457899999999999966 6788999987432211        124589999999999999999887888888889999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||||++|+|+++++.          +++|+.||++||+|||      +|+|..||++
T Consensus       418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl  464 (540)
T 3en9_A          418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF  464 (540)
T ss_dssp             EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEE
T ss_pred             EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEE
Confidence            999999999999864          4688999999999996      4667766653

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.60  E-value=7.3e-16  Score=151.71  Aligned_cols=119  Identities=16%  Similarity=0.185  Sum_probs=90.3

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC------------------cchHHHHHHHHHHHhCC
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG------------------QGEREFKAEVEIISRIH  421 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~------------------~~~~~f~~Ei~il~~l~  421 (492)
                      ..+......|.+.++||+|+||.||+|++.+|+.||||+++....                  .....|.+|+++|++|+
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            344455566778899999999999999987789999999964321                  12346899999999999


Q ss_pred             CCcccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       422 HpNIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                        | +++++++.. +..|||||||.+|+|.+ +..        .....|+.||++||+|||+      |+|..+|+
T Consensus       163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NIL  225 (282)
T 1zar_A          163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVL  225 (282)
T ss_dssp             --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE
T ss_pred             --C-CCcCeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEE
Confidence              6 788886544 56699999999999987 421        1234699999999999964      56665554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.59  E-value=1.2e-15  Score=164.45  Aligned_cols=113  Identities=15%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             eccCCceeEEEEE-cCCCCEEEEEEcccCCC----------cchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEEE
Q 011175          375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGG----------QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       375 LG~G~fG~Vy~g~-~~~g~~VAVK~l~~~~~----------~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++.|++|.++.++ +.-|+.|+||++.....          ...++|.+|+++|+++ +|.||++|++++++++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4555555554433 22478899999964321          1235699999999999 7999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||+||+|+++|.+++.  ++..   +|+.||++||+|||      +|+|+.||++
T Consensus       322 Eyv~G~~L~d~i~~~~~--l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL  372 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEE--IDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMV  372 (569)
T ss_dssp             ECCCSEEHHHHHHTTCC--CCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEE
T ss_pred             ecCCCCcHHHHHHhCCC--CCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEE
Confidence            99999999999986543  6654   58899999999995      7888888764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.50  E-value=1.5e-14  Score=149.88  Aligned_cols=125  Identities=13%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC---cchHHHHHHHHHHHhCCC-Cccc---------ceeeE-
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHH-RHLV---------SLVGY-  431 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~H-pNIv---------~l~g~-  431 (492)
                      .+|...++||+|+||.||+|++ .+|+.||||+++....   ...+.|.+|+.+++.|+| .|+.         ..+++ 
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            4467788999999999999994 5689999999974332   235689999999999987 3221         11111 


Q ss_pred             -----------EEe-----CCeEEEEEecCCCCCHHHHHh-----cCCCCCCCHHHHHHHHHHHHHHHHHhh------cC
Q 011175          432 -----------CIS-----DDRRLLIYDYVPNNTLYFHLH-----GEGRPVLDWATRVKIAAGAARGLAYLH------ED  484 (492)
Q Consensus       432 -----------~~~-----~~~~~lV~Ey~~~GsL~~~l~-----~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~  484 (492)
                                 +..     ....+++|+++ +|+|.+++.     ......++|..++.|+.||++||+|||      +|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD  236 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  236 (413)
T ss_dssp             ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                       111     12346666655 689988874     222344788899999999999999996      56


Q ss_pred             CCCceeeC
Q 011175          485 CKYLIFCF  492 (492)
Q Consensus       485 ~k~~ii~~  492 (492)
                      +|..+|++
T Consensus       237 iKp~NILl  244 (413)
T 3dzo_A          237 LRPVDIVL  244 (413)
T ss_dssp             CCGGGEEE
T ss_pred             cccceEEE
Confidence            77766653

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.45  E-value=6.3e-14  Score=135.86  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CCccceeccCCceeEEEEEc-CCCCE--EEEEEcccCCCc------------------------chHHHHHHHHHHHhCC
Q 011175          369 FADQNLLGEGGFGSVYKGYL-PDGRE--VAIKQLKIGGGQ------------------------GEREFKAEVEIISRIH  421 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~-~~g~~--VAVK~l~~~~~~------------------------~~~~f~~Ei~il~~l~  421 (492)
                      |.+.+.||+|+||.||+|.+ .+|+.  ||||+++.....                        ....+.+|+++|.+|+
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999997 67888  999987543111                        0136889999999999


Q ss_pred             CCcc--cceeeEEEeCCeEEEEEecCCC-C----CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh-c------CCCC
Q 011175          422 HRHL--VSLVGYCISDDRRLLIYDYVPN-N----TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH-E------DCKY  487 (492)
Q Consensus       422 HpNI--v~l~g~~~~~~~~~lV~Ey~~~-G----sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH-~------~~k~  487 (492)
                      |.||  ..++++    +..+|||||+.+ |    +|.+++..     +.+.....++.||++||+||| +      |+|.
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp  199 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHADLSE  199 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECSSCST
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCH
Confidence            8865  344432    356899999942 4    66665432     123456789999999999998 3      5555


Q ss_pred             ceee
Q 011175          488 LIFC  491 (492)
Q Consensus       488 ~ii~  491 (492)
                      .||+
T Consensus       200 ~NIL  203 (258)
T 1zth_A          200 YNIM  203 (258)
T ss_dssp             TSEE
T ss_pred             HHEE
Confidence            5554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.25  E-value=2e-12  Score=131.92  Aligned_cols=108  Identities=10%  Similarity=0.089  Sum_probs=71.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--------------cchHHH--------HHHHHHHHhCCCC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--------------QGEREF--------KAEVEIISRIHHR  423 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--------------~~~~~f--------~~Ei~il~~l~Hp  423 (492)
                      ..-|.+.++||+|+||.||+|...+|+.||||+++....              .....+        .+|...|.+|.+.
T Consensus        94 g~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~  173 (397)
T 4gyi_A           94 KDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE  173 (397)
T ss_dssp             TSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            334888999999999999999988899999998763210              001122        3456666666544


Q ss_pred             cccceeeEEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       424 NIv~l~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|....-+..  +..+|||||+.++.|..++.      +  .....++.||+.+|.|||+
T Consensus       174 gv~vp~p~~~--~~~~LVME~i~G~~L~~l~~------~--~~~~~l~~qll~~l~~lH~  223 (397)
T 4gyi_A          174 GFPVPEPIAQ--SRHTIVMSLVDALPMRQVSS------V--PDPASLYADLIALILRLAK  223 (397)
T ss_dssp             TCSCCCEEEE--ETTEEEEECCSCEEGGGCCC------C--SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeec--cCceEEEEecCCccHhhhcc------c--HHHHHHHHHHHHHHHHHHH
Confidence            4322222222  23379999999988865432      1  1235678999999999975

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.96  E-value=1.9e-09  Score=103.79  Aligned_cols=116  Identities=13%  Similarity=0.038  Sum_probs=92.0

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeE
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRR  438 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~  438 (492)
                      +.+....++|.....+|.|+++.||+... +++.++||+..........++.+|+++|+.|. |-+|.++++++.+.+..
T Consensus         7 ~~l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~   85 (263)
T 3tm0_A            7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence            34555667898888899999999999986 46889999986432233446999999999985 67788999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||++|.+|.+.+.       +......++.+++++|+.||+
T Consensus        86 ~lv~e~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           86 NLLMSEADGVLCSEEYE-------DEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEEEECCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCeehhhccC-------CcccHHHHHHHHHHHHHHHhC
Confidence            99999999999976531       112235788999999999998

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.55  E-value=6.6e-08  Score=92.17  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc--ccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+|....+.+.|.++.||+....+|+.++||+....   ....+.+|+++|+.|++.+  |.++++++...+..++||||
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~   96 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE   96 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence            344444444466679999998777888999987643   2356889999999996545  45799988888889999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ++|.+|.  +..     .+   ...++.++++.|..||+.
T Consensus        97 i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~  126 (264)
T 1nd4_A           97 VPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTL  126 (264)
T ss_dssp             CSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTS
T ss_pred             cCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCC
Confidence            9998883  211     22   236788999999999974

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.50  E-value=2.9e-07  Score=92.87  Aligned_cols=111  Identities=15%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcc--cCCC-cchHHHHHHHHHHHhCCC--CcccceeeEEEeC---CeEEE
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLK--IGGG-QGEREFKAEVEIISRIHH--RHLVSLVGYCISD---DRRLL  440 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~--~~~~-~~~~~f~~Ei~il~~l~H--pNIv~l~g~~~~~---~~~~l  440 (492)
                      ....+.|+.|.++.||+.... +..++||+..  .... ....++.+|+++|+.|++  -+|.+++++|.+.   +..|+
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             CceEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            344678999999999998874 4678888775  3221 224578899999999974  5578999998776   45799


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+.|..|.+..    ...++..++..++.++++.|+.||+.
T Consensus       119 vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~  158 (359)
T 3dxp_A          119 IMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTV  158 (359)
T ss_dssp             EEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998774321    12367888889999999999999973

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.88  E-value=6.2e-05  Score=74.12  Aligned_cols=103  Identities=19%  Similarity=0.103  Sum_probs=78.6

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC---cccceeeEEE-eCCeEEEEEecCCC
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCI-SDDRRLLIYDYVPN  447 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~l~g~~~-~~~~~~lV~Ey~~~  447 (492)
                      .+.|+.|....||+.    |+.++||+-..  ......+.+|+++|+.|.+.   .|-++++++. ..+..|+||||++|
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            467889999999987    56688887531  12345799999999999753   3567777775 34567899999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ..|......    .++..++..++.++++.|+.||+-
T Consensus        98 ~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~  130 (306)
T 3tdw_A           98 QILGEDGMA----VLPDDAKDRLALQLAEFMNELSAF  130 (306)
T ss_dssp             EECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcC
Confidence            988764332    257778889999999999999974

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.70  E-value=4.3e-05  Score=74.93  Aligned_cols=102  Identities=24%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCc--ccceeeEEEeCC---eEEEEEecC
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRH--LVSLVGYCISDD---RRLLIYDYV  445 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpN--Iv~l~g~~~~~~---~~~lV~Ey~  445 (492)
                      .+.|+.|.+..||+..    +.++||+....  .....+.+|+++|+.|. |-.  +.++++++...+   ..|+||||+
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            4668999999999852    56888886422  23467999999999884 333  345555543333   348999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|..|.+.+..    .++..++..++.++++.|+.||+
T Consensus        99 ~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           99 KGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             CCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHc
Confidence            99888654332    26778889999999999999997

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.66  E-value=0.00031  Score=67.13  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=78.7

Q ss_pred             hcCCCccceeccCCce-eEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeEEEEE
Q 011175          366 TDGFADQNLLGEGGFG-SVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG-~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ..+|.. +.+..|..| .||+.... ++..+.||+-..   ....++.+|+++|+.|. +--|-+++++|.+.+..||||
T Consensus        24 l~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvm   99 (272)
T 4gkh_A           24 LYGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLT   99 (272)
T ss_dssp             HTTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             ccCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEE
Confidence            344443 345566666 68987754 466788997653   23457899999999884 334668999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||++|.++.+.....      ...+..++.++++.|.-||+
T Consensus       100 e~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             ECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHT
T ss_pred             EeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcC
Confidence            999999987765432      12345678889999999996

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.64  E-value=0.00014  Score=71.92  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             CccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC---CCcccceeeEEEeCCeEEEEEecCC
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ...+.|+.|.+..+|+... +++.++||+....   ....|.+|+++|+.|.   .-.|.++++++...+..+|||||++
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~  114 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN  114 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence            3456799999999999886 5678889987532   3567899999998884   3568899999988888999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +..+.           .     ..+.++++.|+-||+..
T Consensus       115 G~~~~-----------~-----~~~~~lG~~LA~LH~~~  137 (312)
T 3jr1_A          115 KSKNK-----------Q-----SSFTIFAEKIAQLHQIQ  137 (312)
T ss_dssp             CCCCC-----------T-----THHHHHHHHHHHHHHCC
T ss_pred             CCCCC-----------c-----hhHHHHHHHHHHHHcCC
Confidence            87541           0     24567888899999854

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.62  E-value=4.7e-05  Score=76.31  Aligned_cols=113  Identities=9%  Similarity=-0.022  Sum_probs=78.3

Q ss_pred             ccee-ccCCceeEEEEEcC-------CCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCC---CcccceeeEEEeC--
Q 011175          372 QNLL-GEGGFGSVYKGYLP-------DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHH---RHLVSLVGYCISD--  435 (492)
Q Consensus       372 ~~~L-G~G~fG~Vy~g~~~-------~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~H---pNIv~l~g~~~~~--  435 (492)
                      .+.| +.|..+.+|+....       +++.+++|+.....   ......+.+|+++|+.|..   -.|.++++++.+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3667 88999999988764       26678888765322   1112467889999988843   3567888887655  


Q ss_pred             -CeEEEEEecCCCCCHHHHHh----cCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          436 -DRRLLIYDYVPNNTLYFHLH----GEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       436 -~~~~lV~Ey~~~GsL~~~l~----~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                       +..|+||||++|..|.+.+.    ......++..++..++.++++.|+-||+-
T Consensus       105 ~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~La~LH~~  158 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLHSI  158 (357)
T ss_dssp             TSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCceEEEEecCCCChhhcCcccccccccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence             34689999999887754321    00001256667778899999999999973

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.58  E-value=0.00033  Score=71.26  Aligned_cols=102  Identities=12%  Similarity=0.041  Sum_probs=62.8

Q ss_pred             cceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-------cchHHHHHHHHHHHhCCC--C-cccceeeEEEeCCeEEE
Q 011175          372 QNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-------QGEREFKAEVEIISRIHH--R-HLVSLVGYCISDDRRLL  440 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-------~~~~~f~~Ei~il~~l~H--p-NIv~l~g~~~~~~~~~l  440 (492)
                      .+.||.|.++.||++.+. +++.|+||.......       ...+.+.+|+++|+.+++  + .+.+++++  +.+..+|
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            567999999999999764 467899997642211       123467889999988742  3 34466654  3556789


Q ss_pred             EEecCCCCC-HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 011175          441 IYDYVPNNT-LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH  482 (492)
Q Consensus       441 V~Ey~~~Gs-L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH  482 (492)
                      ||||+.+.. +...+..... ..      .++.+|++.|+-||
T Consensus       113 vmE~l~g~~~~~~~l~~~~~-~~------~~~~~l~~~La~lH  148 (397)
T 2olc_A          113 VMEDLSHLKIARKGLIEGEN-YP------HLSQHIGEFLGKTL  148 (397)
T ss_dssp             EECCCTTSEEHHHHHHTTCC-CT------THHHHHHHHHHHHH
T ss_pred             EEEeCCCcchHHHHHhcCCc-CH------HHHHHHHHHHHHHh
Confidence            999998754 3333332211 11      23455666666666

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.52  E-value=0.00029  Score=68.39  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             CCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC---cccceeeEEEeCCeEEEEEec
Q 011175          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+...+.+|.|..+.||+.++.||+.|.||+-..........|.+|++.|+.|...   -+.++++++    ..++||||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~   91 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW   91 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence            35556789999999999999999999999987544434445789999999988532   244555542    34789999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC  485 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~  485 (492)
                      +.++.+            +..    .+.++.+.|+-||...
T Consensus        92 l~~~~~------------~~~----~~~~lg~~La~lH~~~  116 (288)
T 3f7w_A           92 VDERPP------------TPE----AAERFGHQLAAMHLAG  116 (288)
T ss_dssp             CCCCCC------------CHH----HHHHHHHHHHHHHHTC
T ss_pred             ecccCC------------ChH----HHHHHHHHHHhhhhcc
Confidence            976532            211    2345567777788654

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=97.14  E-value=0.00032  Score=47.55  Aligned_cols=29  Identities=10%  Similarity=0.252  Sum_probs=17.6

Q ss_pred             eeehhhHHHHHHHHHHHHHHHhhhhcccc
Q 011175          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (492)
Q Consensus       270 ~v~i~v~~~iv~~~~l~l~~~~~~rrkk~  298 (492)
                      .++++|++++++++++++++|+++|||++
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence            35566666666666666666666555544

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=97.06  E-value=0.00033  Score=47.33  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             eeehhhHHHHHHHHHHHHHHHhhhhccccc
Q 011175          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEV  299 (492)
Q Consensus       270 ~v~i~v~~~iv~~~~l~l~~~~~~rrkk~~  299 (492)
                      .++.++++++++++++++++|+++|||+++
T Consensus        11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A           11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            355666666766666666666665555443

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.26  E-value=0.011  Score=57.93  Aligned_cols=96  Identities=13%  Similarity=0.086  Sum_probs=60.4

Q ss_pred             ceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC--cccceeeE-----EEeCCeEEEEEecC
Q 011175          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR--HLVSLVGY-----CISDDRRLLIYDYV  445 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp--NIv~l~g~-----~~~~~~~~lV~Ey~  445 (492)
                      +.|+ |....||+....+|+.++||+.+... ...+++..|+++++.|...  .+.+++..     ...++..++||||+
T Consensus        32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i  109 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV  109 (328)
T ss_dssp             EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred             Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence            4566 88889999877677789999986321 2345677788888877422  24455442     23356678999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|..+..         .+.    ..+.++++.|+-||+
T Consensus       110 ~G~~~~~---------~~~----~~~~~~g~~La~lH~  134 (328)
T 1zyl_A          110 GGRQFEA---------DNI----DQMEAVGRYLGRMHQ  134 (328)
T ss_dssp             CCEECCS---------SCH----HHHHHHHHHHHHHHH
T ss_pred             CCCCCCC---------CCH----HHHHHHHHHHHHHHH
Confidence            8754320         111    234556666666664

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.24  E-value=0.0099  Score=58.12  Aligned_cols=111  Identities=11%  Similarity=0.050  Sum_probs=64.8

Q ss_pred             ccHHHHHHHhcCCCc-----cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCc--cccee
Q 011175          357 FTYEELVKATDGFAD-----QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLV  429 (492)
Q Consensus       357 ~~~~~l~~~~~~~~~-----~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~l~  429 (492)
                      ++.+++......|.+     .+.|+.|....+|+....+| .+++|+....  ...+++..|+++|+.|...+  +.+++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~   83 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL   83 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence            445666666665654     34567788899999887555 6788987642  12345667777777664222  23333


Q ss_pred             e------EEEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          430 G------YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       430 g------~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .      +....+..++||||++|..+..         .+    ...+.++++.|+-||.
T Consensus        84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~---------~~----~~~~~~~g~~La~lH~  130 (322)
T 2ppq_A           84 PRKDGELLGELSGRPAALISFLEGMWLRK---------PE----AKHCREVGKALAAMHL  130 (322)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCCSS---------CC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCEEEEEEEeCCCcCCCC---------CC----HHHHHHHHHHHHHHHH
Confidence            2      1223466789999998875421         12    2345667777777775

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.19  E-value=0.0087  Score=58.72  Aligned_cols=74  Identities=12%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC--Ccccceee------EEEeCCeEEEEEe
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVG------YCISDDRRLLIYD  443 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~l~g------~~~~~~~~~lV~E  443 (492)
                      .+.|+.|.++.||+....+| .++||+....    ..++..|+++++.|..  -+|.+++.      +....+..++|||
T Consensus        37 ~~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             EEECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             eeeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            34566678899999887544 5889988641    2334455555555421  13444443      2234677899999


Q ss_pred             cCCCCCH
Q 011175          444 YVPNNTL  450 (492)
Q Consensus       444 y~~~GsL  450 (492)
                      |++|..+
T Consensus       112 ~i~G~~~  118 (346)
T 2q83_A          112 WIEGRPF  118 (346)
T ss_dssp             CCCCBCC
T ss_pred             eecCccC
Confidence            9998754

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.10  E-value=0.015  Score=59.36  Aligned_cols=104  Identities=16%  Similarity=0.085  Sum_probs=62.5

Q ss_pred             ccceeccCCceeEEEEEcCCCCEEEEEEccc-----CCC-c---chHHHHHHHHHHH-hCCCCcccceeeEEEeCCeEEE
Q 011175          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKI-----GGG-Q---GEREFKAEVEIIS-RIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~-----~~~-~---~~~~f~~Ei~il~-~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ..+.||.|..+.||+... +++.++||....     ... .   ....|..|+..+. ...+-.+.+++++.  .+..++
T Consensus        38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l  114 (420)
T 2pyw_A           38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI  114 (420)
T ss_dssp             EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred             EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence            456799999999999875 567899994321     111 1   2234555554333 22335667777765  567799


Q ss_pred             EEecC-CCC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          441 IYDYV-PNN-TLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       441 V~Ey~-~~G-sL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      ||||+ .++ .|...+.....  .     ..++.+|++.|+-||..
T Consensus       115 v~e~l~~g~~~l~~~l~~~~~--~-----~~~~~~lg~~La~lH~~  153 (420)
T 2pyw_A          115 GMRYLEPPHIILRKGLIAGIE--Y-----PFLADHMSDYMAKTLFF  153 (420)
T ss_dssp             EECCCCTTCEEHHHHHHHTCC--C-----TTHHHHHHHHHHHHHHT
T ss_pred             EEeecCCcchhHHHHHhcCCC--C-----HHHHHHHHHHHHHHHHh
Confidence            99999 773 34444432211  1     12456677777777753

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=96.06  E-value=0.0044  Score=41.76  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=10.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccc
Q 011175          274 AVAVGIIAFSLIGLVVWCLRRRKK  297 (492)
Q Consensus       274 ~v~~~iv~~~~l~l~~~~~~rrkk  297 (492)
                      +.++++++++++++++++++|||+
T Consensus        16 ~~vVGvll~vi~~l~~~~~~RRR~   39 (44)
T 2jwa_A           16 SAVVGILLVVVLGVVFGILIKRRQ   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhheehhh
Confidence            333444444445444444444333

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=95.77  E-value=0.0087  Score=61.65  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=64.6

Q ss_pred             cceeccCCceeEEEEEcCC--------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIY  442 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~  442 (492)
                      .+.|+.|....||+....+        ++.|+||+....  .....+.+|+.+|+.|...+| .++++++.  +  .+||
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~  151 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLE  151 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEE
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEE
Confidence            4568889899999998643        478889887421  112567789999998854444 67777653  3  3899


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||++|..|...       .+   ....++.+|++.|+-||+
T Consensus       152 e~l~G~~l~~~-------~l---~~~~~~~~ia~~La~LH~  182 (429)
T 1nw1_A          152 EYIPSRPLSCH-------EI---SLAHMSTKIAKRVAKVHQ  182 (429)
T ss_dssp             CCCCEEECCTT-------GG---GSHHHHHHHHHHHHHHTT
T ss_pred             EEeCCcccChh-------hc---CCHHHHHHHHHHHHHHhC
Confidence            99986544211       01   112457788889999997

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=95.73  E-value=0.014  Score=59.01  Aligned_cols=97  Identities=22%  Similarity=0.247  Sum_probs=59.9

Q ss_pred             ceeccCCceeEEEEEcC--------CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEEe
Q 011175          373 NLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~--------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~E  443 (492)
                      +.|..|....+|+....        +++.|.||+.... .....++.+|.++|+.|...+| -+++++|.  +  .+|||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~--g~v~e  130 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E--GRLEQ  130 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C--ccEEE
Confidence            45777888889998864        2468889886321 2235577899999988853333 57776653  3  29999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |++|..|....       +.   .-.++.+|++.|+-||+-
T Consensus       131 ~i~G~~l~~~~-------l~---~p~~~~~ia~~La~LH~~  161 (379)
T 3feg_A          131 YIPSRPLKTQE-------LR---EPVLSAAIATKMAQFHGM  161 (379)
T ss_dssp             CCSEEECCGGG-------GG---CHHHHHHHHHHHHHHHTC
T ss_pred             EecCccCChhH-------hC---CHHHHHHHHHHHHHHhCC
Confidence            99986653110       11   124567788999999973

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=95.57  E-value=0.0011  Score=69.02  Aligned_cols=61  Identities=5%  Similarity=-0.005  Sum_probs=18.7

Q ss_pred             ccceeccCCceeEEEEEcCC-CCEEEE------EEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe
Q 011175          371 DQNLLGEGGFGSVYKGYLPD-GREVAI------KQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~~~-g~~VAV------K~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~  434 (492)
                      +.+.||   ||+||+|.+.. ...|||      |+++....  .....|.+|..++++++|+||+++++|...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            345676   99999999854 357888      77654322  223579999999999999999999998764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.28  E-value=0.077  Score=52.06  Aligned_cols=101  Identities=10%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             ceeccCCcee-EEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC--CcccceeeEEEeCCeEEEEEecCCCCC
Q 011175          373 NLLGEGGFGS-VYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       373 ~~LG~G~fG~-Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      +.|+.|.... +|+....+|+.+++|......   .+++..|+++++.|..  -++.+++.++.+.+  ++|||++.+..
T Consensus        24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~   98 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL   98 (333)
T ss_dssp             CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred             eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence            4465555444 667765446777777654321   1334556666666632  23567777643333  78999998888


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |.+++....   .+.   ..++.++++.|.-||..
T Consensus        99 l~~~l~~~~---~~~---~~~~~~~~~~La~lH~~  127 (333)
T 3csv_A           99 FTEVINNDP---AQE---MPLYRAAVDLLIHLHDA  127 (333)
T ss_dssp             HHHHHHHCG---GGH---HHHHHHHHHHHHHHHTS
T ss_pred             hHHHhcCCC---ccH---HHHHHHHHHHHHHHhcC
Confidence            887775432   111   35667888889999974

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=95.22  E-value=0.011  Score=38.66  Aligned_cols=15  Identities=20%  Similarity=0.131  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHhhhhc
Q 011175          281 AFSLIGLVVWCLRRR  295 (492)
Q Consensus       281 ~~~~l~l~~~~~~rr  295 (492)
                      .+++++.++|++|||
T Consensus        23 gv~li~~l~~~~~rr   37 (38)
T 2k1k_A           23 GAALLLGILVFRSRR   37 (38)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHeec
Confidence            344444444455544

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.22  E-value=0.027  Score=58.44  Aligned_cols=98  Identities=12%  Similarity=0.066  Sum_probs=63.2

Q ss_pred             cceeccCCceeEEEEEcCC-CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEEecCCCCC
Q 011175          372 QNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      .+.|+.|....+|+....+ ++.|+||+..... ....+..+|+.+|+.|...+| .++++++  .+  .+||||++|..
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G~~  187 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDGYA  187 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCSEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCCcc
Confidence            3568888889999998754 4778888764321 111223689999998865555 5778776  23  35999998765


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          450 LYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       450 L~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      |..      ....+    -.++.+||+.|+-||+.
T Consensus       188 l~~------~~l~~----~~~~~~ia~~La~LH~~  212 (458)
T 2qg7_A          188 LSR------EDIKN----PKFQKLIAKNLKLLHDI  212 (458)
T ss_dssp             CCT------TTTTS----HHHHHHHHHHHHHHHTC
T ss_pred             CCh------hhcCC----HHHHHHHHHHHHHHhcC
Confidence            421      11111    24577889999999974

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=94.80  E-value=0.012  Score=39.26  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=11.7

Q ss_pred             eehhhHHHHHHHHHHHHHHHhhhhc
Q 011175          271 VVIAVAVGIIAFSLIGLVVWCLRRR  295 (492)
Q Consensus       271 v~i~v~~~iv~~~~l~l~~~~~~rr  295 (492)
                      +++++++++++++++.+++|+++||
T Consensus        15 I~~~vv~Gv~ll~~iv~~~~~~~rR   39 (41)
T 2k9y_A           15 VIGGVAVGVVLLLVLAGVGFFIHRR   39 (41)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             EEeehhHHHHHHHHHHHHheeEeee
Confidence            4455555555544233334444444

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.65  E-value=0.055  Score=52.40  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             CCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCccc-ceeeEEEeCCeEEEEEecC-C
Q 011175          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYV-P  446 (492)
Q Consensus       369 ~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~l~g~~~~~~~~~lV~Ey~-~  446 (492)
                      +...+.|+.|....+|+.     +.++||+...... ...+..+|+++++.+...+|. ++++++  .+..++|+||+ .
T Consensus        20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~   91 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAG   91 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTT
T ss_pred             ccceeEcCCcccccccee-----eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCC
Confidence            333678999999999998     4588887753211 112345688888777544443 666543  44457899999 5


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +..|.....         ..+..++.++++.|+-||+.
T Consensus        92 g~~l~~~~~---------~~~~~~~~~~~~~La~lH~~  120 (301)
T 3dxq_A           92 AQTMSPEKF---------KTRPGSPARAGEAFRKLHGS  120 (301)
T ss_dssp             CEECCHHHH---------HHSTTHHHHHHHHHHHHHTS
T ss_pred             CccCCHhhH---------hhhHHHHHHHHHHHHHHhCC
Confidence            444421100         00123567788888889974

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=94.60  E-value=0.03  Score=56.03  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=57.2

Q ss_pred             cceeccCCceeEEEEEcCC---------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPD---------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLI  441 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~---------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV  441 (492)
                      .+.|+.|....+|+....+         ++.+++|+..... ....+..+|+++|+.|...+| .++++.+  .  .++|
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v  112 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRI  112 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEE
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEE
Confidence            3567888888999988643         2678888765321 111234678888888754444 4777654  2  2689


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||++|..|.....      .+    ..++.++++.|+-||+
T Consensus       113 ~e~i~G~~l~~~~~------~~----~~~~~~~a~~La~lH~  144 (369)
T 3c5i_A          113 EEWLYGDPLRIDDL------KN----PTILIGIANVLGKFHT  144 (369)
T ss_dssp             EECCCSEECCGGGG------GC----HHHHHHHHHHHHHHHT
T ss_pred             EEEecCCcCChhhc------CC----hHHHHHHHHHHHHHHc
Confidence            99998754421100      01    2345677888888886

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=94.12  E-value=0.04  Score=37.20  Aligned_cols=31  Identities=16%  Similarity=0.011  Sum_probs=18.7

Q ss_pred             ccceeehhhHHHHHHHHHHHHHHHhhhhcccc
Q 011175          267 TAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (492)
Q Consensus       267 ~~~~v~i~v~~~iv~~~~l~l~~~~~~rrkk~  298 (492)
                      .++.++.++ ++++++++++++++.+|+++++
T Consensus        13 IA~gVVgGv-~~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B           13 IATGMVGAL-LLLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             STHHHHHHH-HHHHHHHHHHHHHHHTTTCCSC
T ss_pred             EEeehhHHH-HHHHHHHHHHHHHhhhhHhhcc
Confidence            344444444 4445555777777887777665

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=93.80  E-value=0.034  Score=37.50  Aligned_cols=32  Identities=19%  Similarity=-0.002  Sum_probs=19.0

Q ss_pred             cceeehhhHHHHHHHHHHHHHHHhhhhccccc
Q 011175          268 AGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEV  299 (492)
Q Consensus       268 ~~~v~i~v~~~iv~~~~l~l~~~~~~rrkk~~  299 (492)
                      +...+++.++++++++++.+++|.+||+++++
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            33334444455555557777778877766654

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=93.15  E-value=0.097  Score=53.68  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             cceeccCCceeEEEEEcCC--------CCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIY  442 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~  442 (492)
                      .+.|..|....+|+....+        ++.|+||+..... ....+..+|.++|+.|...+| .++++.+  .+  ++||
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~~--~~I~  149 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADF--PE--GRIE  149 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE--TT--EEEE
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEc--CC--CEEE
Confidence            4567778888999988743        5788898864322 222245678888888753334 5666543  22  7899


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||++|..|....       +.   .-.++.+|++.|+-||+
T Consensus       150 efI~G~~l~~~~-------l~---~~~~~~~ia~~La~LH~  180 (424)
T 3mes_A          150 EFIDGEPLTTKQ-------LQ---LTHICVEVAKNMGSLHI  180 (424)
T ss_dssp             ECCCSEECCTGG-------GG---SHHHHHHHHHHHHHHHT
T ss_pred             EEeCCccCChhh-------cC---CHHHHHHHHHHHHHHhc
Confidence            999986542110       10   12356778888888886

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=93.04  E-value=0.45  Score=46.93  Aligned_cols=93  Identities=13%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             ccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC---CCcccceeeE------EEeCCeEEEEEecCC
Q 011175          376 GEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGY------CISDDRRLLIYDYVP  446 (492)
Q Consensus       376 G~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~l~g~------~~~~~~~~lV~Ey~~  446 (492)
                      |.|....||+....+| .+++|+......      .+|+++|+.|.   -++|.+.+..      +...+..++||||++
T Consensus        32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~  104 (339)
T 3i1a_A           32 GADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH  104 (339)
T ss_dssp             TSCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred             cCccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence            3344678999987666 899998764321      34555555442   1224454432      334567899999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      |..+..       ..++..    .+.++++.|+-||+...
T Consensus       105 G~~~~~-------~~~~~~----~~~~lg~~La~LH~~~~  133 (339)
T 3i1a_A          105 APNGFT-------QNLTGK----QWKQLGKVLRQIHETSV  133 (339)
T ss_dssp             CCBTTT-------SCCCHH----HHHHHHHHHHHHHTCCC
T ss_pred             CCcCcc-------cCCCHH----HHHHHHHHHHHHhCcCC
Confidence            876621       113322    34577888888998543

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=92.31  E-value=0.036  Score=35.31  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhcc
Q 011175          276 AVGIIAFSLIGLVVWCLRRRK  296 (492)
Q Consensus       276 ~~~iv~~~~l~l~~~~~~rrk  296 (492)
                      ++++++++++++++.+++|||
T Consensus        14 Vvglll~vii~l~~~~~iRRr   34 (35)
T 1iij_A           14 VVGVLLFLILVVVVGILIKRR   34 (35)
T ss_dssp             HHHHHHHHHHTTTTTHHHHHC
T ss_pred             HHHHHHHHHHHHHhheEEeec
Confidence            334555555555544444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=91.25  E-value=0.072  Score=34.84  Aligned_cols=25  Identities=12%  Similarity=-0.022  Sum_probs=16.8

Q ss_pred             ceeehhhHHHHHHHHHHHHHHHhhh
Q 011175          269 GTVVIAVAVGIIAFSLIGLVVWCLR  293 (492)
Q Consensus       269 ~~v~i~v~~~iv~~~~l~l~~~~~~  293 (492)
                      ..+++++++++++++++++++|++|
T Consensus        14 AGiVvG~v~gv~li~~l~~~~~rrr   38 (38)
T 2k1k_A           14 VAVIFGLLLGAALLLGILVFRSRRA   38 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             eeeehHHHHHHHHHHHHHHHHeecC
Confidence            3345666667777777777888765

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=90.38  E-value=0.2  Score=36.39  Aligned_cols=14  Identities=21%  Similarity=0.434  Sum_probs=6.2

Q ss_pred             ehhhHHHHHHHHHH
Q 011175          272 VIAVAVGIIAFSLI  285 (492)
Q Consensus       272 ~i~v~~~iv~~~~l  285 (492)
                      ++|.++++++|+.+
T Consensus        13 vlGg~~~lll~~gl   26 (70)
T 2klu_A           13 VLGGVAGLLLFIGL   26 (70)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHH
Confidence            44444444444333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=88.72  E-value=0.15  Score=34.25  Aligned_cols=30  Identities=10%  Similarity=0.126  Sum_probs=19.2

Q ss_pred             cceeehhhHHHHHHHHHHHHHHHhhhhcccc
Q 011175          268 AGTVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (492)
Q Consensus       268 ~~~v~i~v~~~iv~~~~l~l~~~~~~rrkk~  298 (492)
                      +...+++ +++++++++++++++.+||.+++
T Consensus        14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~k   43 (44)
T 2jwa_A           14 IISAVVG-ILLVVVLGVVFGILIKRRQQKIR   43 (44)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             hHHHHHH-HHHHHHHHHHHHhheehhhhhcc
Confidence            3334555 45666666777788888876664

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=88.11  E-value=0.34  Score=34.02  Aligned_cols=22  Identities=18%  Similarity=0.557  Sum_probs=12.8

Q ss_pred             ceeehhhHHHHHHHHHHHHHHH
Q 011175          269 GTVVIAVAVGIIAFSLIGLVVW  290 (492)
Q Consensus       269 ~~v~i~v~~~iv~~~~l~l~~~  290 (492)
                      .++++++++++++++++.+++|
T Consensus        10 WiIi~svl~GLLLL~Lii~~Lw   31 (54)
T 2l8s_A           10 WVILLSAFAGLLLLMLLILALW   31 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.23  E-value=0.037  Score=57.81  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=26.1

Q ss_pred             chHHHHHHHHHHHhCCCCcccceeeEEEeCC
Q 011175          406 GEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (492)
Q Consensus       406 ~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~  436 (492)
                      ..++|..|+++|.+++|+|||+|+|||+...
T Consensus       322 g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          322 GSETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            3568999999999999999999999998654

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=84.66  E-value=0.87  Score=32.04  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=12.6

Q ss_pred             ceeehhhHHHHHHHHHHHHHHH
Q 011175          269 GTVVIAVAVGIIAFSLIGLVVW  290 (492)
Q Consensus       269 ~~v~i~v~~~iv~~~~l~l~~~  290 (492)
                      .++++++++++++++++.+++|
T Consensus        13 wiIi~svl~GLllL~li~~~Lw   34 (54)
T 2knc_A           13 WWVLVGVLGGLLLLTILVLAMW   34 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666665555555

>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}

Probab=84.26  E-value=0.94  Score=33.50  Aligned_cols=18  Identities=28%  Similarity=0.593  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHhhhhccc
Q 011175          280 IAFSLIGLVVWCLRRRKK  297 (492)
Q Consensus       280 v~~~~l~l~~~~~~rrkk  297 (492)
                      .++.++++.+||+.|.+|
T Consensus        25 aalg~li~gcwcylrlqr   42 (90)
T 1zza_A           25 AALGALILGCWCYLRLQR   42 (90)
T ss_dssp             HHHHHHHHHHHTTTSSCS
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555566777765543

>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}

Probab=84.15  E-value=0.22  Score=32.25  Aligned_cols=9  Identities=22%  Similarity=0.446  Sum_probs=3.9

Q ss_pred             HHHhhhhcc
Q 011175          288 VVWCLRRRK  296 (492)
Q Consensus       288 ~~~~~~rrk  296 (492)
                      +.+++|++|
T Consensus        27 iLi~~w~qK   35 (39)
T 2l6w_A           27 ILIMLWQKK   35 (39)
Confidence            334444444

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=80.44  E-value=0.43  Score=36.60  Aligned_cols=20  Identities=30%  Similarity=0.713  Sum_probs=9.7

Q ss_pred             eehhhHHHHHHHHHHHHHHH
Q 011175          271 VVIAVAVGIIAFSLIGLVVW  290 (492)
Q Consensus       271 v~i~v~~~iv~~~~l~l~~~  290 (492)
                      ++++++++++++.++++++|
T Consensus        13 Iv~gvi~gilliGllllliw   32 (79)
T 2knc_B           13 VLLSVMGAILLIGLAALLIW   32 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            34455555554444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-35
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-35
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-35
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	9e-33
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-32
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-32
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-31
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-31
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-31
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-31
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-30
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-30
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-30
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-29
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-28
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-28
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-28
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-28
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-27
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-27
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-27
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-27
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-26
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-26
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-26
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-26
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-26
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-26
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-26
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-26
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-25
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-25
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-25
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-25
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-25
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-25
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-24
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-24
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-24
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	7e-24
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-23
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-23
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-23
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-23
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-23
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-22
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-22
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	9e-22
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-21
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	7e-21
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-20
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-18
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-17
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-17
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	6e-17
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	7e-17
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-16
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-16
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-16
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-14
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-12

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-35
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             LG G FG V+ GY     +VA+K LK G       F AE  ++ ++ H+ LV L    
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVV 77

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
              +   +I +Y+ N +L   L       L     + +AA  A G+A++ E  
Sbjct: 78  T-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN 129

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 4e-35
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  
Sbjct: 13  QTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVI 69

Query: 433 ISDDRRL-LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           + +   L ++ +Y+   +L  +L   GR VL     +K +      + YL  
Sbjct: 70  VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 121

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (329), Expect = 6e-35
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 365 ATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHH 422
             D F   + LG G  G V+K    P G  +A K + +      R     E++++   + 
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            ++V   G   SD    +  +++   +L   L   GR  +      K++    +GL YL 
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR--IPEQILGKVSIAVIKGLTYLR 121

Query: 483 EDCKYL 488
           E  K +
Sbjct: 122 EKHKIM 127

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (312), Expect = 9e-33
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)

Query: 357 FTYEELVKATDGFAD---------QNLLGEGGFGSVYKGYLP----DGREVAIKQLKIG- 402
           FT+E+  +A   FA          + ++G G FG V  G+L         VAIK LK G 
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 403 GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVL 462
             +  R+F +E  I+ +  H +++ L G        ++I +++ N +L   L        
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF- 125

Query: 463 DWATRVKIAAGAARGLAYLHEDC 485
                V +  G A G+ YL +  
Sbjct: 126 TVIQLVGMLRGIAAGMKYLADMN 148

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-32
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             LG G FG V  G      +VAIK +K G    E EF  E +++  + H  LV L G C
Sbjct: 10  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVC 68

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
                  +I +Y+ N  L  +L             +++       + YL    
Sbjct: 69  TKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 120

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 7e-32
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             +G G FG V+ GY  +  +VAIK ++ G    E +F  E E++ ++ H  LV L G C
Sbjct: 11  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVC 69

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +      L+++++ +  L  +L  +        T + +      G+AYL E C
Sbjct: 70  LEQAPICLVFEFMEHGCLSDYLRTQRGLF-AAETLLGMCLDVCEGMAYLEEAC 121

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 3e-31
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 360 EELVKATDGFADQNL-LGEGGFGSVYKGYL---PDGREVAIKQLKIGGGQGERE-FKAEV 414
           ++L    D     ++ LG G FGSV +G         +VAIK LK G  + + E    E 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGA 474
           +I+ ++ + ++V L+G C   +  +L+ +      L+  L G+    +  +   ++    
Sbjct: 61  QIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQV 118

Query: 475 ARGLAYLH 482
           + G+ YL 
Sbjct: 119 SMGMKYLE 126

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (301), Expect = 3e-31
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE---REFKAEVEIISRIH 421
              F+D   +G G FG+VY    + +   VAIK++   G Q     ++   EV  + ++ 
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           H + +   G  + +    L+ +Y   +        +    L       +  GA +GLAYL
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP--LQEVEIAAVTHGALQGLAYL 131

Query: 482 HE 483
           H 
Sbjct: 132 HS 133

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 4e-31
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 24/135 (17%)

Query: 373 NLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGERE-FKAEVEIISRI-HHRH 424
             LG G FG V +              VA+K LK      ERE   +E++++S + +H +
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG----------------EGRPVLDWATRV 468
           +V+L+G C      L+I +Y     L   L                  +    LD    +
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLL 148

Query: 469 KIAAGAARGLAYLHE 483
             +   A+G+A+L  
Sbjct: 149 SFSYQVAKGMAFLAS 163

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 8e-31
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 371 DQNLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHL 425
           +   LG G FG+V KGY       + VA+K LK          E  AE  ++ ++ + ++
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           V ++G C   +  +L+ +      L  +L       +     +++    + G+ YL 
Sbjct: 71  VRMIGIC-EAESWMLVMEMAELGPLNKYLQQNRH--VKDKNIIELVHQVSMGMKYLE 124

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 3e-30
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 359 YEEL---VKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEV 414
           YE +   +   D +     LG+G FG VYK    +     A K +     +   ++  E+
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGA 474
           +I++   H ++V L+     ++   ++ ++     +   +    RP L  +    +    
Sbjct: 61  DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP-LTESQIQVVCKQT 119

Query: 475 ARGLAYLHE 483
              L YLH+
Sbjct: 120 LDALNYLHD 128

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-30
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVG 430
             +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +G
Sbjct: 14  QRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           Y  +  +  ++  +   ++LY HLH       +    + IA   A+G+ YLH   
Sbjct: 72  YS-TAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKS 124

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-30
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K       +     +AE+     + H +++  +  
Sbjct: 8   QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAA 65

Query: 432 CISDD----RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
              D+    +  L+ DY  + +L+ +L+      +     +K+A   A GLA+LH + 
Sbjct: 66  DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAHLHMEI 120

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (283), Expect = 7e-29
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEII 417
           Y++          ++ LG G +G VY+G        VA+K LK    + E EF  E  ++
Sbjct: 9   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVM 67

Query: 418 SRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARG 477
             I H +LV L+G C  +    +I +++    L  +L    R  +     + +A   +  
Sbjct: 68  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA 127

Query: 478 LAYLHE 483
           + YL +
Sbjct: 128 MEYLEK 133

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-28
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLK---IGGGQGEREFKAEVEIISRIHH 422
           + F     LG+G FG+VY          +A+K L    +     E + + EVEI S + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +++ L GY     R  LI +Y P  T+Y  L    +   D           A  L+Y H
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 123

Query: 483 E 483
            
Sbjct: 124 S 124

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 374 LLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
            +GEG FG V++G           VAIK  K       RE F  E   + +  H H+V L
Sbjct: 14  CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKL 73

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           +G   +++   +I +      L   L       LD A+ +  A   +  LAYL    
Sbjct: 74  IGVI-TENPVWIIMELCTLGELRSFLQVRKYS-LDLASLILYAYQLSTALAYLESKR 128

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++      GR    K +       +   K E+ I++++HH  L++L    
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                 +LI +++    L+  +  E    +  A  +     A  GL ++HE
Sbjct: 96  EDKYEMVLILEFLSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHMHE 145

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (277), Expect = 6e-28
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHR 423
            D +  +++LG G F  V         + VAIK +     +G+    + E+ ++ +I H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++V+L     S     LI   V    L+  +  +G          ++       + YLH+
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF--YTERDASRLIFQVLDAVKYLHD 125

Query: 484 DC 485
             
Sbjct: 126 LG 127

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-27
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
             LGEG +G V           VA+K + +       E  K E+ I   ++H ++V   G
Sbjct: 11  QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           +    + + L  +Y     L+  +  +    +      +       G+ YLH 
Sbjct: 71  HRREGNIQYLFLEYCSGGELFDRIEPDIG--MPEPDAQRFFHQLMAGVVYLHG 121

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-27
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 375 LGEGGFGSVYKGYLP----DGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V +G           VA+K LK   +   +   +F  EV  +  + HR+L+ 
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
           L G  ++   + ++ +  P  +L   L           T  + A   A G+ YL    
Sbjct: 76  LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAVQVAEGMGYLESKR 131

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-27
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 29/139 (20%)

Query: 374 LLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQGERE-FKAEVEIISRI-HHRHL 425
           +LG G FG V               +VA+K LK      ERE   +E+++++++  H ++
Sbjct: 44  VLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI 103

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHG---------------------EGRPVLDW 464
           V+L+G C       LI++Y     L  +L                       E   VL +
Sbjct: 104 VNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF 163

Query: 465 ATRVKIAAGAARGLAYLHE 483
              +  A   A+G+ +L  
Sbjct: 164 EDLLCFAYQVAKGMEFLEF 182

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-27
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
             +G+G  G+VY    +  G+EVAI+Q+ +     +     E+ ++    + ++V+ +  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            +  D   ++ +Y+   +L   +               +     + L +LH 
Sbjct: 86  YLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQALEFLHS 134

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (264), Expect = 3e-26
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 29/156 (18%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGER-EFK 411
              L    +       +GEG FG V++   P          VA+K LK       + +F+
Sbjct: 5   LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64

Query: 412 AEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGR------------ 459
            E  +++   + ++V L+G C       L+++Y+    L   L                 
Sbjct: 65  REAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 124

Query: 460 ----------PVLDWATRVKIAAGAARGLAYLHEDC 485
                     P L  A ++ IA   A G+AYL E  
Sbjct: 125 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK 160

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (266), Expect = 5e-26
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLK---IGGGQGEREFKAEVEIISRIH- 421
           + F+   ++G GGFG VY     D G+  A+K L    I   QGE     E  ++S +  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 422 --HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLA 479
                +V +     + D+   I D +    L++HL   G      A     AA    GL 
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVF--SEADMRFYAAEIILGLE 121

Query: 480 YLHE 483
           ++H 
Sbjct: 122 HMHN 125

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 6e-26
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
             +G G +G   K     DG+ +  K+L  G      ++   +EV ++  + H ++V   
Sbjct: 10  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 69

Query: 430 GYCI--SDDRRLLIYDYVPNNTLYFHLH--GEGRPVLDWATRVKIAAGAARGLAYLHE 483
              I  ++    ++ +Y     L   +    + R  LD    +++       L   H 
Sbjct: 70  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 127

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  106 bits (265), Expect = 6e-26
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++      G   A K +       +   + E++ +S + H  LV+L    
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             D+  ++IY+++    L+  +  E    +     V+      +GL ++HE
Sbjct: 93  EDDNEMVMIYEFMSGGELFEKVADEHNK-MSEDEAVEYMRQVCKGLCHMHE 142

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (262), Expect = 7e-26
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            +G G FG +Y G  +  G EVAIK   +       +   E +I   +     +  + +C
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVK--TKHPQLHIESKIYKMMQGGVGIPTIRWC 71

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            ++    ++   +   +L    +   R      T + +A      + Y+H 
Sbjct: 72  GAEGDYNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMISRIEYIHS 121

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  104 bits (260), Expect = 7e-26
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE---REFKAEVEIISRIH 421
           +D +    +LG GG   V+    L   R+VA+K L+    +       F+ E +  + ++
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 422 HRHLVSLVGYCISDDRRL----LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARG 477
           H  +V++     ++        ++ +YV   TL   +H EG   +     +++ A A + 
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP--MTPKRAIEVIADACQA 123

Query: 478 LAYLHE 483
           L + H+
Sbjct: 124 LNFSHQ 129

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 7e-26
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 22  EVKLGQGCFGEVWMGTWNGTTRVAIKTLKP-GTMSPEAFLQEAQVMKKLRHEKLVQLYAV 80

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
             S++   ++ +Y+   +L   L GE    L     V +AA  A G+AY+    
Sbjct: 81  V-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN 133

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 9e-26
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +G G F +VYKG   +   EVA  +L+         + FK E E++  + H ++V     
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76

Query: 432 CISDDRR----LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCKY 487
             S  +     +L+ + + + TL  +L       +             +GL +LH     
Sbjct: 77  WESTVKGKKCIVLVTELMTSGTLKTYLKRFKV--MKIKVLRSWCRQILKGLQFLHTRTPP 134

Query: 488 LI 489
           +I
Sbjct: 135 II 136

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  103 bits (259), Expect = 1e-25
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG---------QGEREFKAEVEI 416
           + +  + +LG G    V +    P  +E A+K + + GG         +       EV+I
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 417 ISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAA 475
           + ++  H +++ L     ++    L++D +    L+ +L  +    L      KI     
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVT--LSEKETRKIMRALL 120

Query: 476 RGLAYLHE 483
             +  LH+
Sbjct: 121 EVICALHK 128

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVG 430
             +GEG +G VYK     G   A+K++++             E+ I+  + H ++V L  
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------D 484
              +  R +L+++++  +        EG   L+  T          G+AY H+      D
Sbjct: 68  VIHTKKRLVLVFEHLDQDLKKLLDVCEGG--LESVTAKSFLLQLLNGIAYCHDRRVLHRD 125

Query: 485 CKYLIFCF 492
            K      
Sbjct: 126 LKPQNLLI 133

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-25
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++       +    K +K+  G  +   K E+ I++   HR+++ L    
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKV-KGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            S +  ++I++++    ++  ++      L+    V         L +LH 
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEALQFLHS 120

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 372 QNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLV 426
             ++G G FG VY G L D        A+K L      GE  +F  E  I+    H +++
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 427 SLVGYCI-SDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           SL+G C+ S+   L++  Y+ +  L   +  E          +      A+G+ +L 
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN-PTVKDLIGFGLQVAKGMKFLA 147

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 3e-25
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 372 QNLLGEGGFGSVYKGYLPDG---REVAIKQLK-IGGGQGEREFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +       + AIK++K        R+F  E+E++ ++ HH +++
Sbjct: 15  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 74

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHG--------------EGRPVLDWATRVKIAA 472
           +L+G C       L  +Y P+  L   L                     L     +  AA
Sbjct: 75  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 134

Query: 473 GAARGLAYLHE 483
             ARG+ YL +
Sbjct: 135 DVARGMDYLSQ 145

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 5e-25
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDG-----REVAIKQLKIGGGQGER-EFKAEVEIISRIHH 422
              Q ++G G FG VYKG L          VAIK LK G  + +R +F  E  I+ +  H
Sbjct: 9   VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
            +++ L G        ++I +Y+ N         E          V +  G A G+ YL 
Sbjct: 69  HNIIRLEGVISKYKPMMIITEYMENGA-LDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA 127

Query: 483 EDC 485
              
Sbjct: 128 NMN 130

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 373 NLLGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRH 424
             LG G FG V +            R VA+K LK G    E R   +E++I+  I HH +
Sbjct: 19  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78

Query: 425 LVSLVGYCISDDRRLLI-YDYVPNNTLYFHLHGEG--------------RPVLDWATRVK 469
           +V+L+G C      L++  ++     L  +L  +               +  L     + 
Sbjct: 79  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 138

Query: 470 IAAGAARGLAYLHE 483
            +   A+G+ +L  
Sbjct: 139 YSFQVAKGMEFLAS 152

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-24
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 9/128 (7%)

Query: 361 ELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGG-GQGEREFKAEV 414
            ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E 
Sbjct: 4   RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGA 474
            +++ + + H+  L+G C++   + LI   +P   L  ++      +      +      
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNI-GSQYLLNWCVQI 120

Query: 475 ARGLAYLH 482
           A+G+ YL 
Sbjct: 121 AKGMNYLE 128

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 373 NLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQGE-REFKAEVEIISRI-HH 422
             LGEG FG V                 +VA+K LK    + +  +  +E+E++  I  H
Sbjct: 19  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRP--------------VLDWATRV 468
           +++++L+G C  D    +I +Y     L  +L     P               L     V
Sbjct: 79  KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 138

Query: 469 KIAAGAARGLAYLHE 483
             A   ARG+ YL  
Sbjct: 139 SCAYQVARGMEYLAS 153

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 7e-24
 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 364 KATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISR 419
           K  + F    +LGEG F +V     L   RE AIK L+   I           E +++SR
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLA 479
           + H   V L      D++      Y  N  L  ++   G    D        A     L 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS--FDETCTRFYTAEIVSALE 122

Query: 480 YLHEDC 485
           YLH   
Sbjct: 123 YLHGKG 128

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 95.6 bits (237), Expect = 2e-23
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----------GQGEREFKAEVEIISRIHH 422
            L+GEG   +V+  Y     E  +K  K+G             G+  F       +R   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
           R L  L G  +        Y +  N  L   +  +    +      ++       +A  +
Sbjct: 66  RALQKLQGLAVPKV-----YAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY 120

Query: 483 EDC 485
              
Sbjct: 121 HRG 123

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 3e-23
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 15/126 (11%)

Query: 373 NLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
             LG+G FG VY+G             VAIK +       ER EF  E  ++   +  H+
Sbjct: 26  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 85

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGR--------PVLDWATRVKIAAGAARG 477
           V L+G        L+I + +    L  +L                  +  +++A   A G
Sbjct: 86  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG 145

Query: 478 LAYLHE 483
           +AYL+ 
Sbjct: 146 MAYLNA 151

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 97.2 bits (241), Expect = 3e-23
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            +GEG FG +++G  L + ++VAIK           + + E      +     +  V Y 
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPR--RSDAPQLRDEYRTYKLLAGCTGIPNVYYF 69

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
             +    ++   +   +L   L   GR      T    A      +  +HE
Sbjct: 70  GQEGLHNVLVIDLLGPSLEDLLDLCGRK-FSVKTVAMAAKQMLARVQSIHE 119

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 6e-23
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +LG G  G V + +      + A+K L+        + + EVE+  R     H+V +V  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPKARREVELHWRASQCPHIVRIVDV 73

Query: 432 C----ISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
                      L++ + +    L+  +   G          +I       + YLH 
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS 129

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 9e-23
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           + D  ++G G FG VY+  L D G  VAIK++     Q +R    E++I+ ++ H ++V 
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL----QDKRFKNRELQIMRKLDHCNIVR 77

Query: 428 LVGYCISDDRR------LLIYDYVPNNTLYFHLH-GEGRPVLDWATRVKIAAGAARGLAY 480
           L  +  S   +       L+ DYVP        H    +  L             R LAY
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 137

Query: 481 LHE 483
           +H 
Sbjct: 138 IHS 140

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (239), Expect = 2e-22
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 354 RSMFTYEELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQG 406
           RS F  +E+ K              +G G +G+V        G +VAIK+L         
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRR------LLIYDYVPNNTLYFHLHGEGRP 460
            +    E+ ++  + H +++ L+     D+         L+  ++  +      H +   
Sbjct: 61  AKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK--- 117

Query: 461 VLDWATRVKIAAGAARGLAYLHE 483
            L       +     +GL Y+H 
Sbjct: 118 -LGEDRIQFLVYQMLKGLRYIHA 139

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 3e-22
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHR 423
              + + + +GEG +G V   Y   +   VAIK++     Q   +    E++I+ R  H 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 424 HLVSLVGYCISDDRRLLIYDYVPN---NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAY 480
           +++ +     +     +   Y+         + L       L             RGL Y
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH--LSNDHICYFLYQILRGLKY 124

Query: 481 LHE 483
           +H 
Sbjct: 125 IHS 127

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 9e-22
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGER----- 408
           ++F  E +    D +     LG G F  V K      G + A K +K    +  R     
Sbjct: 1   TVFRQENV---DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSR 57

Query: 409 -EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATR 467
            + + EV I+  I H ++++L     +    +LI + V    L+  L  +     + A  
Sbjct: 58  EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEA-- 115

Query: 468 VKIAAGAARGLAYLHEDC 485
            +       G+ YLH   
Sbjct: 116 TEFLKQILNGVYYLHSLQ 133

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 1e-21
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE---FKAEVEIISR-IH 421
           + F    +LG+G FG V+   +    +  AIK LK      + +      E  ++S    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
           H  L  +     + +    + +Y+    L +H+    +   D +     AA    GL +L
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHK--FDLSRATFYAAEIILGLQFL 119

Query: 482 ------HEDCK 486
                 + D K
Sbjct: 120 HSKGIVYRDLK 130

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 7e-21
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG-----EREFKAEVEIISRIHHRHLV 426
           + LGEG F +VYK       + VAIK++K+G          R    E++++  + H +++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDC 485
            L+          L++D++  +                           +GL YLH+  
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHI--KAYMLMTLQGLEYLHQHW 120

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 2e-20
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHR 423
           + F     +GEG +G VYK      G  VA+K++++             E+ ++  ++H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL-- 481
           ++V L+    ++++  L+++++ +  L   +       +             +GLA+   
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120

Query: 482 ----HEDCK 486
               H D K
Sbjct: 121 HRVLHRDLK 129

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 3e-20
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 21/144 (14%)

Query: 351 GHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQG-- 406
           G  R+   YE +            +GEG +G V+K       GR VA+K++++  G+   
Sbjct: 1   GLCRADQQYECV----------AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGM 50

Query: 407 EREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPNNTL----YFHLHGEGR 459
                 EV ++  +    H ++V L   C            +    +      +L     
Sbjct: 51  PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE 110

Query: 460 PVLDWATRVKIAAGAARGLAYLHE 483
           P +   T   +     RGL +LH 
Sbjct: 111 PGVPTETIKDMMFQLLRGLDFLHS 134

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 4e-20
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE------FKAEVEIISRIHHRH-- 424
           LLG GGFGSVY G  + D   VAIK ++        E         EV ++ ++      
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
           ++ L+ +    D  +LI +        F    E    L               + + H 
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEAVRHCHN 128

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.8 bits (209), Expect = 1e-18
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSL 428
             LG G FG V+      +GR  A+K LK   +   +       E  ++S + H  ++ +
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE 483
            G      +  +I DY+    L+  L    R           AA     L YLH 
Sbjct: 70  WGTFQDAQQIFMIMDYIEGGELFSLLRKSQRF--PNPVAKFYAAEVCLALEYLHS 122

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-17
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLV 429
             +GEG +G+V+K         VA+K++++             E+ ++  + H+++V L 
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
               SD +  L++++   +   +     G    +            +GL + H
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKS--FLFQLLKGLGFCH 118

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 80.7 bits (198), Expect = 3e-17
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 15/147 (10%)

Query: 352 HSRSMFTYEELVKAT---DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
             R  + YE  V      D +     LG G +  V++   + +  +V +K LK      +
Sbjct: 17  RPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKK 73

Query: 408 REFKAEVEIISRI-HHRHLVSLVGYCISDDRRL--LIYDYVPNNTLYFHLHGEGRPVLDW 464
           ++ K E++I+  +    ++++L         R   L++++V N              L  
Sbjct: 74  KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTD 128

Query: 465 ATRVKIAAGAARGLAYLHEDCKYLIFC 491
                      + L Y H         
Sbjct: 129 YDIRFYMYEILKALDYCHSMGIMHRDV 155

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 6e-17
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
            +G G  G V   Y     R VAIK+L          +    E+ ++  ++H++++SL+ 
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 431 YCISDDRR------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED 484
                          L+ + +  N              D      +      G+ +LH  
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQMEL-----DHERMSYLLYQMLCGIKHLHSA 138

Query: 485 CKY 487
              
Sbjct: 139 GII 141

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.5 bits (195), Expect = 7e-17
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHH 422
           D F     LG G FG V        G   A+K L   K+   +       E  I+  ++ 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             LV L      +    ++ +YV    ++ HL   GR           AA       YLH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR--FSEPHARFYAAQIVLTFEYLH 158

Query: 483 E 483
            
Sbjct: 159 S 159

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 1e-16
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLK----IGGGQGEREFKAEVEIIS 418
           + F    +LG G +G V+          G+  A+K LK    +   +     + E +++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 419 RI-HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARG 477
            I     LV+L     ++ +  LI DY+    L+ HL    R                  
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRER--FTEHEVQIYVGEIVLA 141

Query: 478 LAYLHE 483
           L +LH+
Sbjct: 142 LEHLHK 147

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 2e-16
 Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHH 422
           + F    LLG+G FG V        GR  A+K L+   I           E  ++    H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH 482
             L +L     + DR   + +Y     L+FHL  E              A     L YLH
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV--FTEERARFYGAEIVSALEYLH 122

Query: 483 E 483
            
Sbjct: 123 S 123

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 4e-16
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLV 429
             +G+G FG V+K      G++VA+K++ +   +         E++I+  + H ++V+L+
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75

Query: 430 GYCISDDRR--------LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL 481
             C +             L++D+  ++      +   +  L    R  +      GL Y+
Sbjct: 76  EICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKR--VMQMLLNGLYYI 133

Query: 482 HE 483
           H 
Sbjct: 134 HR 135

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 357 FTYEELVKA----TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQGERE 409
           F  +EL K      + + + + +G G +GSV   +    G  VA+K+L          + 
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV----PNNTLYFHLHGEGRPVLDWA 465
              E+ ++  + H +++ L+             D             ++    +  L   
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK--LTDD 121

Query: 466 TRVKIAAGAARGLAYLHEDCKY 487
               +     RGL Y+H     
Sbjct: 122 HVQFLIYQILRGLKYIHSADII 143

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (158), Expect = 3e-12
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 21/144 (14%)

Query: 363 VKATDGFAD-----QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEI 416
               + + D        LG G F +V+    + +   VA+K ++      E   + E+++
Sbjct: 4   AFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA-AEDEIKL 62

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIY-DYVPNNTLYFHLHGE-------------GRPVL 462
           + R++            +   +LL + ++   N ++  +  E                 +
Sbjct: 63  LQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGI 122

Query: 463 DWATRVKIAAGAARGLAYLHEDCK 486
                 +I+     GL Y+H  C 
Sbjct: 123 PLIYVKQISKQLLLGLDYMHRRCG 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.92
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.92
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.92
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.91
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.91
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.91
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.91
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.91
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.91
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.91
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.91
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.9
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.9
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.9
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.9
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.9
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.9
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.9
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.9
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.9
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.9
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.89
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.89
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.89
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.89
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.88
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.88
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.88
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.88
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.88
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.88
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.88
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.88
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.87
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.87
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.87
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.87
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.87
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.87
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.87
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.87
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.86
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.86
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.86
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.85
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.85
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.84
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.83
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.82
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.82
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.82
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.82
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.82
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.81
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.8
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.8
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.78
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.78
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.57
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.52
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.22
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.95
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.24
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.77
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	92.06
d1bo1a_	383	Phosphatidylinositol phosphate kinase IIbeta, PIPK	86.94

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.1e-26  Score=225.51  Aligned_cols=126  Identities=24%  Similarity=0.353  Sum_probs=110.1

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ..++|++.+.||+|+||+||+|++. +|+.||||+++... ...++|++|+++|++|+|+|||+++|+|.+++..|||||
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E   93 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   93 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEee
Confidence            3467888899999999999999864 58899999997543 345689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|.++|++.....++|..+++|+.|||+||+|||+      |+|..+|+
T Consensus        94 ~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NIL  147 (287)
T d1opja_          94 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL  147 (287)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             cccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEE
Confidence            9999999999987666679999999999999999999964      55555554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=217.63  Aligned_cols=123  Identities=26%  Similarity=0.437  Sum_probs=107.9

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|++.+.||+|+||+||+|++.+++.||||+++.. ....++|.+|+++|++|+|+|||+|+|+|.+.+..|||||||.
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            467888999999999999999988889999999754 3445789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +|+|+++++... ..++|..+++|+.|||+||+|||+      |+|..+|+
T Consensus        84 ~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nil  133 (263)
T d1sm2a_          84 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCL  133 (263)
T ss_dssp             TCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEE
T ss_pred             CCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhccceeecccchhhee
Confidence            999999987653 458999999999999999999964      55555554

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.9e-26  Score=221.88  Aligned_cols=124  Identities=27%  Similarity=0.424  Sum_probs=106.3

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|++.+.||+|+||+||+|++++++.||||+++... ...++|.+|+++|++|+|+|||+|+|+|. ++..|||||||
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~   89 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM   89 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeC
Confidence            45788889999999999999999888899999997543 44568999999999999999999999875 46679999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .+|+|.++++......++|.++++|+.|||+||+|||      +|+|..+|+
T Consensus        90 ~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIl  141 (272)
T d1qpca_          90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANIL  141 (272)
T ss_dssp             TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             CCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhhee
Confidence            9999999886554445899999999999999999995      566666554

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.5e-25  Score=214.92  Aligned_cols=122  Identities=18%  Similarity=0.318  Sum_probs=108.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++.......+.|.+|+++|++|+|+|||+++++|.+.+..|||||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4699999999999999999985 468999999998665556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .+|+|++++.++   .+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus       100 ~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NIL  148 (293)
T d1yhwa1         100 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL  148 (293)
T ss_dssp             TTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeE
Confidence            999999988654   3899999999999999999996      466665554

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.8e-25  Score=212.45  Aligned_cols=115  Identities=26%  Similarity=0.411  Sum_probs=103.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~  446 (492)
                      ++|++.++||+|+||+||+|++++++.||||+++... ..+++|++|+++|++++|+|||+|+|+|.+++.++||||||.
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            5788899999999999999999888899999998643 345789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          447 NNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       447 ~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +|+|..++.... ..+.+..+++|+.|||+||+|||+
T Consensus        83 ~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~  118 (258)
T d1k2pa_          83 NGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLES  118 (258)
T ss_dssp             TEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999876543 348899999999999999999986

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-25  Score=214.67  Aligned_cols=124  Identities=19%  Similarity=0.276  Sum_probs=105.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++.... ...++|.+|+++|++|+|+|||+|++++.+++..|||||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            35788999999999999999986 4689999999975433 234579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|+++|..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        84 y~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NIL  135 (271)
T d1nvra_          84 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL  135 (271)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             ccCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEE
Confidence            999999999986543  48999999999999999999964      66666655

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-25  Score=214.91  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=109.3

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      +.|++.+.||+|+||.||+|++ .+|+.||||+++.......+.|.+|+++|++|+|+|||+|+|+|.+.+.+|||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            4588889999999999999986 468899999998766666788999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .+|+|.+++.+.+ ..+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus        92 ~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIl  142 (288)
T d2jfla1          92 AGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL  142 (288)
T ss_dssp             TTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhhee
Confidence            9999999876543 34899999999999999999996      566666655

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.4e-25  Score=217.29  Aligned_cols=124  Identities=27%  Similarity=0.406  Sum_probs=103.3

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CC---EEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GR---EVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~---~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||+||+|++.. |+   .||||+++..... ..++|.+|+++|++|+|+|||+|+|+|.+.+.+|||
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            446677899999999999998642 32   5899988754333 346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|+++++... ..++|.++++|+.|||+||+|||+      |+|..+|+
T Consensus       106 ~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NIL  160 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNIL  160 (299)
T ss_dssp             EECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEE
Confidence            99999999999887643 358999999999999999999965      55665554

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=212.16  Aligned_cols=123  Identities=24%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC------cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++....      ...++|.+|+++|++|+|+|||+++|+|.+.+.+|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5689999999999999999996 4689999999964321      23467999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||||.+|+|+++|..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        90 iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nil  145 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIM  145 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEE
Confidence            9999999999999997654  48999999999999999999964      55665554

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.7e-25  Score=214.47  Aligned_cols=117  Identities=28%  Similarity=0.456  Sum_probs=103.0

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      .++|++.+.||+|+||+||+|++++++.||||+|+... ...++|++|+.+|++++|+|||+|+|+|. ++.+|||||||
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~   93 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   93 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEec
Confidence            35788999999999999999999888899999997543 34578999999999999999999999985 56689999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      .+|+|..+++......++|.++++|+.|||+||+|||++
T Consensus        94 ~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~  132 (285)
T d1fmka3          94 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM  132 (285)
T ss_dssp             TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            999999888765545699999999999999999999753

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.91  E-value=1.4e-24  Score=218.20  Aligned_cols=125  Identities=22%  Similarity=0.315  Sum_probs=110.1

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++.....+.+.|.+|+++|++|+|+|||+++++|.+++.+||||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35799999999999999999985 46899999999766555567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |.+|+|+++|.+.. ..+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus       105 ~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIl  156 (350)
T d1koaa2         105 MSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIM  156 (350)
T ss_dssp             CCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHee
Confidence            99999999986543 34899999999999999999995      567776665

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.7e-25  Score=214.65  Aligned_cols=122  Identities=28%  Similarity=0.493  Sum_probs=102.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|.+.++||+|+||+||+|+++  ..||||+++...  ....++|++|+++|++|+|+|||+++|+|.+ +.++||||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            467888999999999999999874  359999997543  3345689999999999999999999998754 56899999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|+++|+..+ ..++|.++++|+.|||+||+|||+      |+|..||+
T Consensus        84 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiL  136 (276)
T d1uwha_          84 WCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIF  136 (276)
T ss_dssp             CCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             cCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEE
Confidence            999999999997543 348999999999999999999975      55555554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=208.88  Aligned_cols=123  Identities=29%  Similarity=0.393  Sum_probs=106.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..   .....+.|.+|+++|++|+|+|||+++++|.+++..||||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            5688999999999999999986 46889999998632   2234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||.+|+|+++|.+.+  .+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus        86 Ey~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nil  138 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLL  138 (263)
T ss_dssp             ECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccce
Confidence            9999999999997654  3899999999999999999996      566666665

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=209.51  Aligned_cols=123  Identities=26%  Similarity=0.408  Sum_probs=101.5

Q ss_pred             cCCCccce-eccCCceeEEEEEcC---CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNL-LGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~-LG~G~fG~Vy~g~~~---~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|.+.++ ||+|+||.||+|++.   ++..||||+++..... ..++|++|+++|++|+|+|||+|+|+|.+ +.+|||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            45666674 999999999999863   3457999999755433 34689999999999999999999999864 568999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||++|+|++++...+ ..+++.++++|+.|||+||+|||+      |+|..+|+
T Consensus        87 mE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nil  141 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVL  141 (285)
T ss_dssp             EECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhhee
Confidence            99999999999886543 358999999999999999999975      55655554

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-24  Score=216.04  Aligned_cols=124  Identities=23%  Similarity=0.291  Sum_probs=107.8

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++.... ...++|++|+++|++|+|+|||+++++|.+.+.+|||||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            46799999999999999999995 4688999999975433 334679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc-------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE-------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~-------~~k~~ii~  491 (492)
                      ||.+|+|++++++.++  +++..+..|+.||++||+|||+       |+|+.+|+
T Consensus        85 y~~gg~L~~~l~~~~~--l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NIL  137 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGR--IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNIL  137 (322)
T ss_dssp             CCTTEEHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEE
T ss_pred             cCCCCcHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHee
Confidence            9999999999976543  8999999999999999999974       45555554

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.90  E-value=3.4e-24  Score=215.55  Aligned_cols=124  Identities=23%  Similarity=0.290  Sum_probs=108.8

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecC
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~  445 (492)
                      ++|++.++||+|+||.||+|+. .+|+.||||+++.....+.+.|.+|+++|++|+|+|||+|+++|.+++.+|||||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            5689999999999999999985 569999999998655455667999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .+|+|++++...+ ..|++.+.+.|+.||++||+|||      +|+|+.+|+
T Consensus       109 ~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NIL  159 (352)
T d1koba_         109 SGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM  159 (352)
T ss_dssp             CCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccccccccc
Confidence            9999998876543 34899999999999999999996      566776665

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=211.15  Aligned_cols=124  Identities=19%  Similarity=0.272  Sum_probs=107.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .++|.+.+.||+|+||+||+|+. .+|+.||||+++... .+...|.+|+++|++++|+|||+|+++|++++.+||||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            46789999999999999999986 468899999997543 3345689999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |.+|+|+++|+..+ ..+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus        83 ~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIl  134 (321)
T d1tkia_          83 ISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENII  134 (321)
T ss_dssp             CCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccee
Confidence            99999999997543 24899999999999999999996      466666554

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-24  Score=208.66  Aligned_cols=117  Identities=18%  Similarity=0.296  Sum_probs=99.3

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEe--CCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--~~~~~lV  441 (492)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++.....  ..+.|.+|+++|++|+|+|||+++++|.+  ++.+|||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5789999999999999999985 46899999999755432  34579999999999999999999999975  4568999


Q ss_pred             EecCCCCCHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          442 YDYVPNNTLYFHLHGE--GRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~--~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||.+|+|.+++.+.  .+..+++.+++.|+.||++||+|||+
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~  127 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR  127 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998642  23469999999999999999999954

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.4e-24  Score=211.61  Aligned_cols=124  Identities=22%  Similarity=0.283  Sum_probs=102.8

Q ss_pred             hcCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .+.|++.++||+|+||+||+|+.. +|+.||||+++.... ...+.|.+|+++|++|+|+|||+|+++|.+++.+|||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            356899999999999999999864 688999999975432 234568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|+++|..++  .+++.+++.|+.||++||+|||+      |+|+.+|+
T Consensus        88 ~~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil  139 (307)
T d1a06a_          88 LVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLL  139 (307)
T ss_dssp             CCCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ccCCCcHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhhceeeeEEeccccee
Confidence            999999999997654  48999999999999999999964      56665554

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.5e-24  Score=206.58  Aligned_cols=116  Identities=23%  Similarity=0.371  Sum_probs=96.0

Q ss_pred             ceeccCCceeEEEEEcCC---CCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEecCCC
Q 011175          373 NLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (492)
Q Consensus       373 ~~LG~G~fG~Vy~g~~~~---g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey~~~  447 (492)
                      ++||+|+||+||+|.+++   ++.||||+++....  ...++|++|+++|++|+|+|||+|+|+|.+ +..|||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            579999999999998643   45799999974332  234679999999999999999999999864 567899999999


Q ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          448 NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       448 GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |+|.+++++..  .++|.++++|+.|||+||+|||      +|+|..+|+
T Consensus        92 g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nil  139 (277)
T d1xbba_          92 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVL  139 (277)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             CcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhc
Confidence            99999998654  4899999999999999999995      456666554

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-24  Score=210.54  Aligned_cols=115  Identities=25%  Similarity=0.454  Sum_probs=99.4

Q ss_pred             hcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC-CeEEEEEec
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLIYDY  444 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-~~~~lV~Ey  444 (492)
                      .++|++.++||+|+||.||+|++ .|+.||||+++..  ...++|.+|+++|++|+|+|||+++|+|.+. +.+||||||
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey   82 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   82 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             HHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEec
Confidence            35677889999999999999998 5788999999743  3456899999999999999999999999754 568999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      +.+|+|.++|+.++...++|..+++|+.|||+||+|||+
T Consensus        83 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~  121 (262)
T d1byga_          83 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG  121 (262)
T ss_dssp             CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhcccccc
Confidence            999999999976544458999999999999999999986

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=209.83  Aligned_cols=123  Identities=26%  Similarity=0.287  Sum_probs=107.1

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++|+|+|||+|+++|.+++.+||||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5689999999999999999986 468999999986422   233467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||.+|+|++++...+  .+++.+++.|+.||++||+|||      +|+|..+|+
T Consensus        88 Ey~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIl  140 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENIL  140 (288)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccc
Confidence            9999999999987654  3899999999999999999996      566776665

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.3e-24  Score=205.92  Aligned_cols=115  Identities=23%  Similarity=0.294  Sum_probs=97.7

Q ss_pred             CccceeccCCceeEEEEEcC-CCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe----CCeEEEEE
Q 011175          370 ADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIY  442 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~----~~~~~lV~  442 (492)
                      ++.++||+|+||+||+|++. +++.||||+++...  ....+.|.+|+++|++|+|+|||+++|+|++    .+.+||||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            45678999999999999864 58899999986432  2334579999999999999999999999875    34579999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHEDCK  486 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~~k  486 (492)
                      |||.+|+|.++|.+..  .+++.+++.|+.||++||+|||++..
T Consensus        92 E~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~~~~  133 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTP  133 (270)
T ss_dssp             ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             eCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999997654  48999999999999999999987553

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=7.7e-24  Score=209.23  Aligned_cols=122  Identities=25%  Similarity=0.383  Sum_probs=104.2

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcc---hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      .|+..+.||+|+||.||+|+. .+|+.||||+++......   .++|.+|+++|++|+|+|||+++|+|.+.+.+|||||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            388889999999999999985 568899999997544322   3579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.+|+|+.++..++  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        96 ~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NIL  147 (309)
T d1u5ra_          96 YCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL  147 (309)
T ss_dssp             CCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE
T ss_pred             ecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEE
Confidence            999999987765543  48999999999999999999964      56665554

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=1.2e-23  Score=204.69  Aligned_cols=116  Identities=21%  Similarity=0.324  Sum_probs=101.9

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---------chHHHHHHHHHHHhCC-CCcccceeeEEEe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---------GEREFKAEVEIISRIH-HRHLVSLVGYCIS  434 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---------~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~  434 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++.....         ..+.|.+|+++|++|+ |+|||+++++|.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            36789999999999999999985 56889999999754321         1235889999999997 9999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ++.+|||||||++|+|+++|+.++  .+++.++++|+.||++||+|||+
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~  128 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHK  128 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997654  48999999999999999999975

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-23  Score=203.79  Aligned_cols=124  Identities=28%  Similarity=0.418  Sum_probs=104.6

Q ss_pred             cCCCccceeccCCceeEEEEEcCCC-----CEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDG-----REVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g-----~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      +.|++.++||+|+||.||+|+++++     ..||||+++..... ..++|++|+++|++|+|+|||+|+|+|.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4577789999999999999987432     36999999754433 34579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||||.+|+|.+++.... ..++|.++++|+.|||+||+|||      +|+|..+|+
T Consensus        87 v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NIL  142 (283)
T d1mqba_          87 ITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNIL  142 (283)
T ss_dssp             EEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhccccccccCccccceEE
Confidence            999999999998886543 35899999999999999999996      466666654

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=2.3e-23  Score=202.51  Aligned_cols=124  Identities=23%  Similarity=0.290  Sum_probs=105.0

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc---chHHHHHHHHHHHhCCCCcccceeeEEEeCC----e
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDD----R  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~----~  437 (492)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++.....   ..+.|.+|+++|++++|+|||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            35689999999999999999985 56899999999754332   2357999999999999999999999998654    3


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .|||||||.+|+|++++...+  .+++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIl  143 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM  143 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccc
Confidence            789999999999999887654  3899999999999999999996      466666664

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-23  Score=206.08  Aligned_cols=125  Identities=29%  Similarity=0.508  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEcCC-CC--EEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|++.++||+|+||+||+|++.+ |.  .||||+++... ....++|.+|+++|++| +|+|||+++|+|.+.+.+|||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            568888999999999999998743 44  47888886433 33456899999999999 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC--------------CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGE--------------GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~--------------~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|.++|+.+              ....|+|.++++|+.|||+||+|||+      |+|..+|+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL  159 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL  159 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEE
Confidence            9999999999999754              23569999999999999999999975      55554443

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-23  Score=206.74  Aligned_cols=126  Identities=23%  Similarity=0.390  Sum_probs=102.7

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC-C-----CEEEEEEcccCC-CcchHHHHHHHHHHHhC-CCCcccceeeEEEeCCe
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD-G-----REVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~-g-----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~~  437 (492)
                      .++|++.++||+|+||+||+|++.. +     ..||||++.... ....+.|++|+++|.+| +|+|||+|+|+|.+.+.
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            4678889999999999999998632 2     269999986433 34456899999999998 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCC---------------------CCCCHHHHHHHHHHHHHHHHHhh------cCCCCcee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGR---------------------PVLDWATRVKIAAGAARGLAYLH------EDCKYLIF  490 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~---------------------~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii  490 (492)
                      +|||||||++|+|+++|+.++.                     ..++|..++.|+.|||+||+|||      +|+|..+|
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Ni  195 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNV  195 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGE
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcc
Confidence            9999999999999999975432                     24899999999999999999996      56666655


Q ss_pred             e
Q 011175          491 C  491 (492)
Q Consensus       491 ~  491 (492)
                      +
T Consensus       196 l  196 (325)
T d1rjba_         196 L  196 (325)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=207.12  Aligned_cols=125  Identities=26%  Similarity=0.334  Sum_probs=108.5

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++..   .....+.+++|+++|++++|+|||+++++|.+.+.+|||
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            46799999999999999999985 56899999999643   223456799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||||.+|+|++++.+.+.  +++.....|+.||+.||+|||      +|+|+.+|++
T Consensus        84 ~ey~~gg~L~~~~~~~~~--~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl  138 (337)
T d1o6la_          84 MEYANGGELFFHLSRERV--FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLML  138 (337)
T ss_dssp             EECCTTCBHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEE
T ss_pred             eeccCCCchhhhhhcccC--CcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEe
Confidence            999999999999987553  888899999999999999996      5677766653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.9e-23  Score=204.23  Aligned_cols=131  Identities=26%  Similarity=0.412  Sum_probs=109.8

Q ss_pred             HHHHHhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEE
Q 011175          361 ELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCI  433 (492)
Q Consensus       361 ~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~  433 (492)
                      +++..+++|++.+.||+|+||+||+|++.      +++.||||+++.....+ .++|.+|+++|++|+|+||++++|+|.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            34445678999999999999999999863      35689999997654443 457999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCC----------------------CCCCCHHHHHHHHHHHHHHHHHhh------cCC
Q 011175          434 SDDRRLLIYDYVPNNTLYFHLHGEG----------------------RPVLDWATRVKIAAGAARGLAYLH------EDC  485 (492)
Q Consensus       434 ~~~~~~lV~Ey~~~GsL~~~l~~~~----------------------~~~l~~~~~l~ia~qIa~gL~YLH------~~~  485 (492)
                      +.+..++|||||.+|+|+++|+...                      ...++|.++++|+.|||+||+|||      +|+
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            9999999999999999999986432                      224889999999999999999996      466


Q ss_pred             CCceee
Q 011175          486 KYLIFC  491 (492)
Q Consensus       486 k~~ii~  491 (492)
                      |..+|+
T Consensus       167 Kp~NIL  172 (301)
T d1lufa_         167 ATRNCL  172 (301)
T ss_dssp             SGGGEE
T ss_pred             cccceE
Confidence            666655

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.9e-23  Score=203.01  Aligned_cols=123  Identities=25%  Similarity=0.285  Sum_probs=106.2

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..   .....+.|.+|+++|++++|+|||++++++.+.+.+||||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5688999999999999999996 46899999999642   2234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||.||+|..++.....  +.+...+.|+.||+.||+|||+      |+|+.+|+
T Consensus        84 E~~~gg~l~~~~~~~~~--~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIL  136 (316)
T d1fota_          84 DYIEGGELFSLLRKSQR--FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENIL  136 (316)
T ss_dssp             CCCCSCBHHHHHHHTSS--CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE
T ss_pred             eecCCcccccccccccc--ccccHHHHHHHHHHHhhhhhccCcEEccccCchhee
Confidence            99999999998876554  7888888999999999999975      55665554

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=201.07  Aligned_cols=124  Identities=25%  Similarity=0.303  Sum_probs=102.9

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC----CCEEEEEEcccCCCcc-hHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~----g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      .++|++.++||+|+||.||+|++..    +..||||+++...... .+.|++|+++|++|+|+|||+|+|+|. ++.+||
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            4678899999999999999998632    3468999987544333 457999999999999999999999985 567899


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|+|++++.... ..+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        85 v~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIl  140 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL  140 (273)
T ss_dssp             EEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhhee
Confidence            999999999999876543 358999999999999999999965      55665554

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-23  Score=203.66  Aligned_cols=123  Identities=23%  Similarity=0.355  Sum_probs=103.4

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHHHHHHHHH-hCCCCcccceeeEEEeCCeEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIIS-RIHHRHLVSLVGYCISDDRRLLI  441 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~-~l~HpNIv~l~g~~~~~~~~~lV  441 (492)
                      ++|+++++||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+.+|. .++|+|||+++++|.+++.+|||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            6789999999999999999986 468899999996421   233456777777765 68999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          442 YDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       442 ~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||||.+|+|+++|+...+  +++.+++.|+.||+.||+|||+      |+|..+|+
T Consensus        82 mEy~~~g~L~~~i~~~~~--~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL  135 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHK--FDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNIL  135 (320)
T ss_dssp             EECCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE
T ss_pred             EeecCCCcHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHhCCeeeccCccccee
Confidence            999999999999976544  8899999999999999999964      55555554

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.5e-23  Score=200.19  Aligned_cols=124  Identities=19%  Similarity=0.354  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++.++||+|+||+||+|+. .+|+.||||+++....  ...+.|.+|+++|++|+|+|||+++++|.+.+.+|||||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            6799999999999999999985 5689999999975432  234689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ||.++ +.+++.......+++.+++.|+.||++||+|||+      |+|+.+|+
T Consensus        82 ~~~~~-~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl  134 (298)
T d1gz8a_          82 FLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL  134 (298)
T ss_dssp             CCSEE-HHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ecCCc-hhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchhee
Confidence            99765 5555544444569999999999999999999965      55666654

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.4e-23  Score=202.72  Aligned_cols=127  Identities=24%  Similarity=0.358  Sum_probs=106.0

Q ss_pred             HhcCCCccceeccCCceeEEEEEc------CCCCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeCC
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~~  436 (492)
                      ..++|++.++||+|+||.||+|++      .+++.||||+++..... ...+|++|+++|++| +|+|||+++|+|.+.+
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            346788899999999999999985      23568999999765433 345799999999999 7999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC----------------CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEG----------------RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~----------------~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ..+||||||.+|+|+++|++..                ...+++.++++|+.|||+||+|||+      |+|..+|+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccc
Confidence            9999999999999999997542                2358899999999999999999964      55555554

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=200.76  Aligned_cols=119  Identities=24%  Similarity=0.368  Sum_probs=98.7

Q ss_pred             cceeccCCceeEEEEEcCCC----CEEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeC-CeEEEEEecC
Q 011175          372 QNLLGEGGFGSVYKGYLPDG----REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLIYDYV  445 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-~~~~lV~Ey~  445 (492)
                      .++||+|+||+||+|++.++    ..||||+++... ....++|++|+++|++|+|+|||+|+|+|.+. +..+||||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            47899999999999986432    258999997543 33446899999999999999999999999864 5789999999


Q ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          446 PNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       446 ~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      ++|+|.++++... ..+.+..+++|+.|||+||+|||+      |+|..+|+
T Consensus       112 ~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NIL  162 (311)
T d1r0pa_         112 KHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCM  162 (311)
T ss_dssp             TTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEe
Confidence            9999999987553 357899999999999999999965      66665554

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.87  E-value=8.3e-23  Score=199.26  Aligned_cols=123  Identities=21%  Similarity=0.304  Sum_probs=106.7

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.++||+|+||+||+|++.+|+.||||+++....  ...+.|.+|+.+|++|+|+|||+++++|.+.+..+|||||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            67899999999999999999988899999999975432  2346899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +.+++|..++..+  ..+++.++..|+.||++||+|||      +|+|..+|+
T Consensus        82 ~~~~~~~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIl  132 (286)
T d1ob3a_          82 LDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLL  132 (286)
T ss_dssp             CSEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ehhhhHHHHHhhc--CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceee
Confidence            9988777776544  34999999999999999999996      466666665

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-23  Score=205.06  Aligned_cols=127  Identities=24%  Similarity=0.343  Sum_probs=105.4

Q ss_pred             HhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCCc-chHHHHHHHHHHHhCCCCcccceeeEEEeCCe
Q 011175          365 ATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (492)
Q Consensus       365 ~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~  437 (492)
                      ..++|.+.+.||+|+||.||+|++.      +++.||||+++..... ....|++|+++|++++|+|||+++|+|...+.
T Consensus        18 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~   97 (308)
T d1p4oa_          18 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   97 (308)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCc
Confidence            3467888899999999999999863      2568999999754333 33569999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC--------CCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGE--------GRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~--------~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+||||||.+|+|.++++..        ....++|.++++|+.|||+||.|||+      |+|..+|+
T Consensus        98 ~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiL  165 (308)
T d1p4oa_          98 TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCM  165 (308)
T ss_dssp             CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEE
T ss_pred             eeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCcee
Confidence            99999999999999988632        22347999999999999999999965      55555554

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-22  Score=200.62  Aligned_cols=110  Identities=27%  Similarity=0.417  Sum_probs=92.6

Q ss_pred             cCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHH--HHHHHhCCCCcccceeeEEEeCC----eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAE--VEIISRIHHRHLVSLVGYCISDD----RRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~E--i~il~~l~HpNIv~l~g~~~~~~----~~~l  440 (492)
                      ++|.+.++||+|+||.||+|++ +|+.||||+++..   ..+++.+|  +..+++++|+|||+|+|+|.+.+    .+||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~---~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            4577889999999999999997 7899999999643   23444444  44556789999999999998754    5789


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||.+|+|+++|++.   .++|.++++|+.|||+||+|||+
T Consensus        79 v~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~  118 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             EEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864   38999999999999999999964

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.1e-23  Score=198.74  Aligned_cols=115  Identities=26%  Similarity=0.388  Sum_probs=90.0

Q ss_pred             cCCCccceeccCCceeEEEEEcC--CC--CEEEEEEcccCC---CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP--DG--REVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~--~g--~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~  439 (492)
                      ++|++.+.||+|+||+||+|++.  ++  ..||||+++...   ....++|.+|+++|++|+|+|||+++|+|.+ +.++
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            45888899999999999999853  23  368999997532   2334689999999999999999999999965 5678


Q ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          440 LIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       440 lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||||||.+|+|.+++..+. ..+++..+++|+.|||+||+|||+
T Consensus        87 lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~  129 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLES  129 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999998876543 248999999999999999999975

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=198.95  Aligned_cols=115  Identities=26%  Similarity=0.484  Sum_probs=95.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCC----EEEEEEcccCC-CcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~l  440 (492)
                      ++|++.++||+|+||+||+|++. +|+    .||||+++... .+..++|++|+++|++|+|+|||+|+|+|.+ +..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~-~~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-STVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCeeE
Confidence            45888999999999999999863 343    58999886433 3446789999999999999999999999986 45778


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      |||||.+|+|.+++.... ..++|..+++|+.|||+||+|||+
T Consensus        88 v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~  129 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLED  129 (317)
T ss_dssp             EEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998887653 458999999999999999999975

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=198.95  Aligned_cols=126  Identities=27%  Similarity=0.373  Sum_probs=100.6

Q ss_pred             hcCCCccceeccCCceeEEEEEcCC--------CCEEEEEEcccCCCc-chHHHHHHHHHHHhC-CCCcccceeeEEEeC
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~~~--------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~~  435 (492)
                      .++|.+.+.||+|+||.||+|++..        +..||||+++..... ...+|.+|+.+|.++ +|+|||+|+|+|.++
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            3578888999999999999998522        246999999765443 346899999999988 899999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          436 DRRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       436 ~~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      +.+++|||||.+|+|+++|+.+.              ...+++.++++|+.|||+||+|||+      |+|..+|+
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiL  167 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  167 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeeccccee
Confidence            99999999999999999997543              2358999999999999999999964      66666654

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.1e-22  Score=202.32  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=107.7

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccC---CCcchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~  442 (492)
                      ++|++.++||+|+||.||+|+. .+|+.||||+++..   .....+.|++|+++|++|+|+|||+++++|.+.+..++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            5689999999999999999986 46899999998632   2234467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      ||+.+|+|+.++.+.+  .+++.+.+.|+.||++||+|||      +|+|+.+|++
T Consensus       121 e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl  174 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLI  174 (350)
T ss_dssp             ECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred             ccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHccc
Confidence            9999999999997654  3899999999999999999995      5677766653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=200.82  Aligned_cols=121  Identities=21%  Similarity=0.289  Sum_probs=101.6

Q ss_pred             hcCCCcc-ceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhC-CCCcccceeeEEEe----CCeE
Q 011175          366 TDGFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS----DDRR  438 (492)
Q Consensus       366 ~~~~~~~-~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~l~g~~~~----~~~~  438 (492)
                      .++|.+. ++||+|+||.||+|+. .+|+.||||+++.     ...+.+|+++|.++ +|+|||+|+++|.+    ++.+
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            3578765 5699999999999985 5689999999863     35688999987665 89999999999875    3568


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |||||||.||+|+++|..++...|++.+++.|+.||++||+|||      +|+|+.+|+
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIl  143 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL  143 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccc
Confidence            99999999999999998765556999999999999999999996      466666654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-22  Score=197.89  Aligned_cols=119  Identities=24%  Similarity=0.348  Sum_probs=96.7

Q ss_pred             ccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc-----chHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEec
Q 011175          371 DQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-----GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       371 ~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~-----~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      .+++||+|+||+||+|+. .+|+.||||+++.....     ..+.|++|+++|++|+|+|||+++++|.+++..||||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            357899999999999996 45899999999744322     134699999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      |.+|++..++..+  ..+++.++..|+.||++||+|||      +|+|..+|+
T Consensus        82 ~~~~~~~~~~~~~--~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIl  132 (299)
T d1ua2a_          82 METDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLL  132 (299)
T ss_dssp             CSEEHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             hcchHHhhhhhcc--cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEE
Confidence            9998777665433  34888889999999999999996      566666665

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=4.3e-22  Score=201.02  Aligned_cols=125  Identities=26%  Similarity=0.325  Sum_probs=102.7

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC---CcchHHHH---HHHHHHHhCCCCcccceeeEEEeCCeE
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFK---AEVEIISRIHHRHLVSLVGYCISDDRR  438 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~---~~~~~~f~---~Ei~il~~l~HpNIv~l~g~~~~~~~~  438 (492)
                      .++|++.++||+|+||.||+|+. .+|+.||||+++...   ......++   +|+++|+.++|+|||+++++|.+.+.+
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            36799999999999999999986 468999999985321   11223344   446777888999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceeeC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFCF  492 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~~  492 (492)
                      |||||||.+|+|+++|.+..  .+.+..++.|+.||++||+|||      +|+|+.+|++
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl  140 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILL  140 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred             EEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEE
Confidence            99999999999999997654  3789999999999999999996      5667666653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.5e-22  Score=194.14  Aligned_cols=134  Identities=24%  Similarity=0.345  Sum_probs=104.7

Q ss_pred             HHHHHHHhcCCCccceeccCCceeEEEEEcC------CCCEEEEEEcccCCC-cchHHHHHHHHHHHhC-CCCcccceee
Q 011175          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVG  430 (492)
Q Consensus       359 ~~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~l~g  430 (492)
                      .++++...++|++.++||+|+||+||+|++.      +++.||||+++.... ...+.|.+|+++|.++ +|.|||++++
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            3444445578999999999999999999853      246799999975443 3346788898888887 6899999999


Q ss_pred             EEEeCC-eEEEEEecCCCCCHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHHHHHhh------cCCCCce
Q 011175          431 YCISDD-RRLLIYDYVPNNTLYFHLHGEG--------------RPVLDWATRVKIAAGAARGLAYLH------EDCKYLI  489 (492)
Q Consensus       431 ~~~~~~-~~~lV~Ey~~~GsL~~~l~~~~--------------~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~i  489 (492)
                      +|.+.+ .++||||||.+|+|.++|+.++              +..++|.++++|+.|||+||+|||      +|+|..+
T Consensus        85 ~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~N  164 (299)
T d1ywna1          85 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARN  164 (299)
T ss_dssp             EECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGG
T ss_pred             eeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccc
Confidence            987654 6899999999999999997532              235889999999999999999995      6777777


Q ss_pred             eeC
Q 011175          490 FCF  492 (492)
Q Consensus       490 i~~  492 (492)
                      |++
T Consensus       165 ILl  167 (299)
T d1ywna1         165 ILL  167 (299)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            653

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=190.11  Aligned_cols=123  Identities=20%  Similarity=0.321  Sum_probs=106.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeCCeEEEEEe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~~~~lV~E  443 (492)
                      ++|++++.||+|+||+||+|+. .+|+.||||+++....  ...+.+.+|+.+|++++|+|||+++++|.+.+..+||||
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            5789999999999999999995 5688999999975433  335689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          444 YVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       444 y~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |+.+++|..+++..+  .+.+..+..++.||++||+|||+      |+|+.+|+
T Consensus        82 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIl  133 (292)
T d1unla_          82 FCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLL  133 (292)
T ss_dssp             CCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE
T ss_pred             ecccccccccccccc--ccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccc
Confidence            999999988876544  47899999999999999999964      56655554

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-21  Score=190.47  Aligned_cols=123  Identities=23%  Similarity=0.301  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc------chHHHHHHHHHHHhCC--CCcccceeeEEEeCCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIH--HRHLVSLVGYCISDDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~--HpNIv~l~g~~~~~~~  437 (492)
                      ++|++.++||+|+||.||+|+. .+|+.||||+++.....      ....|.+|+++|++++  |+|||+++++|.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5789999999999999999985 56899999999643211      1234789999999996  8999999999999999


Q ss_pred             EEEEEecCCC-CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPN-NTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~-GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .||||||+.+ ++|++++..+.  .+++.+++.|+.||++||+|||+      |+|..+|+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIl  142 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL  142 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceE
Confidence            9999999986 67888876544  48999999999999999999964      66665554

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.83  E-value=4.6e-21  Score=190.42  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=101.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEe--CCeEEEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCIS--DDRRLLIY  442 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~--~~~~~lV~  442 (492)
                      ++|+++++||+|+||+||+|+. .+|+.||||+++..   ..+++.+|+++|++|+ |+||++++++|..  .+.++|||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5799999999999999999985 56899999999743   3567999999999995 9999999999985  45689999


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh------hcCCCCceeeC
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYL------HEDCKYLIFCF  492 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YL------H~~~k~~ii~~  492 (492)
                      |||.+|+|..++     +.+++.+++.|+.||++||+||      |+|+|+.+|++
T Consensus       112 e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi  162 (328)
T d3bqca1         112 EHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI  162 (328)
T ss_dssp             ECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred             eecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEE
Confidence            999999987653     2389999999999999999999      56777777653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.9e-21  Score=190.16  Aligned_cols=122  Identities=20%  Similarity=0.277  Sum_probs=95.4

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCc--chHHHHHHHHHHHhCCCCcccceeeEEEeCC------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~------  436 (492)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.....  ..+.+.+|+++|++|+|+|||+|+++|...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            46788999999999999999985 46999999999754332  3457899999999999999999999998655      


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          437 RRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       437 ~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+||||||| +++|..+++..   .|++..++.|+.||++||+|||+      |+|+.+|+
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL  153 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA  153 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             eEEEEEecc-cccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhh
Confidence            469999999 66777776543   38999999999999999999964      66666655

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.2e-21  Score=190.39  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=102.3

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEeC-----Ce
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DR  437 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~-----~~  437 (492)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++....  ...+.+.+|+++|++|+|+|||++++++...     +.
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            35799999999999999999984 5799999999975433  2345789999999999999999999998643     34


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .++||||+.+|+|+++++.+   .+++.+++.|+.||++||+|||+      |+|+.+|+
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NIL  153 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA  153 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccc
Confidence            57778888999999998643   38999999999999999999975      66666654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.3e-21  Score=190.06  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=98.0

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCC-cchHHHHHHHHHHHhCCCCcccceeeEEEeCC----eEEE
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD----RRLL  440 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~~----~~~l  440 (492)
                      ++|.+.++||+|+||+||+|+. .+|+.||||+++.... ...+.|++|+++|++|+|+|||+++++|....    ..++
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            4688899999999999999984 5799999999975443 23457999999999999999999999997643    2355


Q ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          441 IYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      ||||+.+|+|++++..+   .+++.+++.|+.||++||+|||      +|+|..+|+
T Consensus        88 l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NIL  141 (345)
T d1pmea_          88 LVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLL  141 (345)
T ss_dssp             EEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             EEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEE
Confidence            56677799999999754   3899999999999999999996      566766665

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=189.64  Aligned_cols=120  Identities=28%  Similarity=0.393  Sum_probs=95.1

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcccceeeEEEeC------CeEEE
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD------DRRLL  440 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~~------~~~~l  440 (492)
                      +|...++||+|+||+||+|++ .+|+.||||+++...    +.+.+|+++|++|+|+|||+++++|...      .++||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            477789999999999999996 468999999997532    2345799999999999999999999653      24789


Q ss_pred             EEecCCCCCHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          441 IYDYVPNNTLYFHLHG-EGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       441 V~Ey~~~GsL~~~l~~-~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      |||||.+|.+..+++. .....+++.+++.|+.||++||+|||+      |+|+.+|+
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NIL  154 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLL  154 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEE
Confidence            9999987754443321 233458999999999999999999964      56666665

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-20  Score=185.61  Aligned_cols=124  Identities=19%  Similarity=0.332  Sum_probs=98.7

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCC--CcchHHHHHHHHHHHhCCCCcccceeeEEEe--------
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS--------  434 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~--------  434 (492)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|+++|++|+|+||++++++|..        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            46789999999999999999996 578999999986443  2344679999999999999999999999865        


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          435 DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       435 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .+.+|||||||.++++..+....  ..+.+.....|+.||++||+|||+      |+|..+|+
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~--~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NIL  149 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVL  149 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             CceEEEEEeccCCCccchhhhcc--cccccHHHHHHHHHHHHHHHHhccCCEEecCcCchhee
Confidence            34579999999888776554333  347888899999999999999964      66666654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.5e-21  Score=188.27  Aligned_cols=123  Identities=24%  Similarity=0.323  Sum_probs=103.8

Q ss_pred             cCCCccceeccCCceeEEEEEc----CCCCEEEEEEcccCC----CcchHHHHHHHHHHHhCCC-CcccceeeEEEeCCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~H-pNIv~l~g~~~~~~~  437 (492)
                      ++|++.++||+|+||+||+|+.    .+|+.||||+++...    ....+.|.+|+++|++|+| +||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6699999999999999999974    247899999986432    2234578999999999976 799999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc------CCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE------DCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~------~~k~~ii~  491 (492)
                      .++|||||.+|+|++++...+.  +.+...+.++.||++||+|||+      |+|..+|+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~--~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nil  161 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRER--FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL  161 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             eeeeeecccccHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHhhcCCEEeccCCcccee
Confidence            9999999999999999976544  6778888899999999999975      66665554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.6e-20  Score=181.07  Aligned_cols=125  Identities=22%  Similarity=0.343  Sum_probs=97.8

Q ss_pred             hcCCCccceeccCCceeEEEEEc-CC-CCEEEEEEcccCC--CcchHHHHHHHHHHHhC---CCCcccceeeEEEe----
Q 011175          366 TDGFADQNLLGEGGFGSVYKGYL-PD-GREVAIKQLKIGG--GQGEREFKAEVEIISRI---HHRHLVSLVGYCIS----  434 (492)
Q Consensus       366 ~~~~~~~~~LG~G~fG~Vy~g~~-~~-g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l---~HpNIv~l~g~~~~----  434 (492)
                      .++|+++++||+|+||+||+|+. .+ ++.||||+++...  ......+.+|+++|++|   +|+|||+|+++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46899999999999999999985 33 5679999996432  22234677888887766   89999999999864    


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          435 -DDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       435 -~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                       ...++||||||.+|+|..+... ....+++...+.|+.||++||+|||      +|+|+.+|+
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NIL  148 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL  148 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             cCceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEE
Confidence             2467899999998877655443 3345899999999999999999996      466666665

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.8e-20  Score=185.17  Aligned_cols=120  Identities=21%  Similarity=0.248  Sum_probs=96.5

Q ss_pred             cCCCccceeccCCceeEEEEEcC-CCCEEEEEEcccCCC--cchHHHHHHHHHHHhCCCCcccceeeEEEe------CCe
Q 011175          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS------DDR  437 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~l~g~~~~------~~~  437 (492)
                      ++|++.++||+|+||+||+|+.. +|+.||||+++....  .....+.+|+.+|++++|+|||+++++|..      .+.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            57999999999999999999964 689999999975432  233568999999999999999999999964      367


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          438 RLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       438 ~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      +|||||||.+| |.+.++.    .+++..+..++.||+.||+|||      +|+|+.+|+
T Consensus        97 ~~iv~Ey~~~~-l~~~~~~----~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil  151 (355)
T d2b1pa1          97 VYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV  151 (355)
T ss_dssp             EEEEEECCSEE-HHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             eEEEEeccchH-HHHhhhc----CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccc
Confidence            89999999665 5555532    3789999999999999999996      566666654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.78  E-value=2.9e-19  Score=174.66  Aligned_cols=121  Identities=19%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCC-CcccceeeEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~l~g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.++||+|+||+||+|+. .+|+.||||+++...  +..++++|++++++|+| .||+.+++++.+.+..++||||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            5688999999999999999995 468899999986432  23467889999999965 8999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      | +|+|.++++..++ .+.+.++++|+.|++.||+|||      +|+|+.+|+
T Consensus        83 ~-~~~l~~~~~~~~~-~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nil  133 (293)
T d1csna_          83 L-GPSLEDLLDLCGR-KFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFL  133 (293)
T ss_dssp             C-CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE
T ss_pred             c-CCCHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHCCceeccCCcccee
Confidence            9 7899888876543 5899999999999999999996      566776665

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.8e-19  Score=173.32  Aligned_cols=121  Identities=19%  Similarity=0.241  Sum_probs=95.5

Q ss_pred             cCCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCccccee-eEEEeCCeEEEEEec
Q 011175          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV-GYCISDDRRLLIYDY  444 (492)
Q Consensus       367 ~~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~l~-g~~~~~~~~~lV~Ey  444 (492)
                      ++|++.+.||+|+||+||+|++ .+|+.||||+++...  ...+|.+|+++|++++|.|+|.++ +++.+.+..+|||||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            4689999999999999999985 468899999987543  234688999999999877765554 555677888999999


Q ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          445 VPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       445 ~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      | +|+|.+++.... ..+++..++.|+.||++||+|||      +|+|..+|+
T Consensus        85 ~-~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl  135 (299)
T d1ckia_          85 L-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL  135 (299)
T ss_dssp             C-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             c-CCchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhcc
Confidence            9 455665554433 34899999999999999999996      566776664

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.4e-15  Score=150.21  Aligned_cols=115  Identities=15%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             CCCccceeccCCceeEEEEEc-CCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-----------CCcccceeeEEEe-
Q 011175          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----------HRHLVSLVGYCIS-  434 (492)
Q Consensus       368 ~~~~~~~LG~G~fG~Vy~g~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----------HpNIv~l~g~~~~-  434 (492)
                      +|+++++||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++|++|+           |+|||++++++.. 
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            488999999999999999985 578999999997432 22356888999988875           4789999998864 


Q ss_pred             -CCeEEEEEecCCCCCH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          435 -DDRRLLIYDYVPNNTL-YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       435 -~~~~~lV~Ey~~~GsL-~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                       ....++||+++.++.+ ..++.......+.+..+..|+.||++||+|||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~  143 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR  143 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh
Confidence             4566777777765544 333344444568889999999999999999986

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=7.8e-15  Score=133.47  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=80.9

Q ss_pred             CccceeccCCceeEEEEEcCCCCEEEEEEcccCCCc------------------chHHHHHHHHHHHhCCCCcccceeeE
Q 011175          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ------------------GEREFKAEVEIISRIHHRHLVSLVGY  431 (492)
Q Consensus       370 ~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~------------------~~~~f~~Ei~il~~l~HpNIv~l~g~  431 (492)
                      .+.++||+|+||.||+|+..+|+.||||+++.....                  ....+.+|+.+|.+++|.||++++++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            456899999999999999888999999987532110                  01235678899999999999998865


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhh------cCCCCceee
Q 011175          432 CISDDRRLLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLH------EDCKYLIFC  491 (492)
Q Consensus       432 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH------~~~k~~ii~  491 (492)
                      .    ..+|||||+.++.+..         +.+....+|+.||++||+|||      +|+|+.||+
T Consensus        83 ~----~~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NIL  135 (191)
T d1zara2          83 E----GNAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVL  135 (191)
T ss_dssp             E----TTEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE
T ss_pred             c----CCEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhhee
Confidence            3    2379999998875532         233345678999999999996      466666665

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.22  E-value=2.1e-06  Score=79.80  Aligned_cols=117  Identities=13%  Similarity=0.036  Sum_probs=85.2

Q ss_pred             HHHHHHhcCCCccceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCC-CCcccceeeEEEeCCeE
Q 011175          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRR  438 (492)
Q Consensus       360 ~~l~~~~~~~~~~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~l~g~~~~~~~~  438 (492)
                      .++.+....|...+..+-++.+.||+... +++.+.||+...........+.+|+.+|..|. |--+-++++++.+++..
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            56777778887766655555678999875 56677888876444334456788998888774 44467889999889999


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 011175          439 LLIYDYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHED  484 (492)
Q Consensus       439 ~lV~Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~~  484 (492)
                      +|||||++|..+.+.+...       ....+++.++++.|+.||+.
T Consensus        86 ~lv~~~l~G~~~~~~~~~~-------~~~~~~~~~l~~~l~~lH~~  124 (263)
T d1j7la_          86 NLLMSEADGVLCSEEYEDE-------QSPEKIIELYAECIRLFHSI  124 (263)
T ss_dssp             EEEEECCSSEEHHHHTTTC-------SCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEeccccccccccccc-------ccHHHHHHHHHHHHHHHhcc
Confidence            9999999999886654321       12345678889999999974

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.95  E-value=0.001  Score=60.47  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             eeccCCc-eeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCC--cccceeeEEEeCCeEEEEEecCCCCCH
Q 011175          374 LLGEGGF-GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR--HLVSLVGYCISDDRRLLIYDYVPNNTL  450 (492)
Q Consensus       374 ~LG~G~f-G~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp--NIv~l~g~~~~~~~~~lV~Ey~~~GsL  450 (492)
                      .+..|.. +.||+....++..+.||.-....   ..++.+|+++|+.|...  .+-++++++.+.+..++||||++|.+|
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~---~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccC---HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            4555554 57999988778888899765432   33577788888777433  356788888888899999999988765


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          451 YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       451 ~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      .+.       .+.   ..+++.++++.|+-||+
T Consensus        94 ~~~-------~~~---~~~~~~~l~~~la~LH~  116 (255)
T d1nd4a_          94 LSS-------HLA---PAEKVSIMADAMRRLHT  116 (255)
T ss_dssp             TTS-------CCC---HHHHHHHHHHHHHHHTT
T ss_pred             ccc-------ccc---HHHHHHHHHHHHHHHcc
Confidence            321       122   23345677888888886

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.0071  Score=59.05  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             cceeccCCceeEEEEEcCC-CCEEEEEEc----ccCCC---cchHHHHHHHHHHHhC-CC--CcccceeeEEEeCCeEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPD-GREVAIKQL----KIGGG---QGEREFKAEVEIISRI-HH--RHLVSLVGYCISDDRRLL  440 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~-g~~VAVK~l----~~~~~---~~~~~f~~Ei~il~~l-~H--pNIv~l~g~~~~~~~~~l  440 (492)
                      .+.||.|....||+....+ ++.|+||.-    +....   ...+...+|+++|+.+ .+  ..+.+++++  +.+..+|
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            4568999999999998644 678999953    22111   1223455688877766 23  345666654  4566789


Q ss_pred             EEecCCCCCH
Q 011175          441 IYDYVPNNTL  450 (492)
Q Consensus       441 V~Ey~~~GsL  450 (492)
                      ||||+.+..+
T Consensus       109 vmE~L~~~~~  118 (392)
T d2pula1         109 VMEDLSHLKI  118 (392)
T ss_dssp             EECCCTTSEE
T ss_pred             EEeccCCccc
Confidence            9999987654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.77  E-value=0.016  Score=56.36  Aligned_cols=96  Identities=20%  Similarity=0.264  Sum_probs=63.5

Q ss_pred             cceeccCCceeEEEEEcCCC--------CEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc-cceeeEEEeCCeEEEEE
Q 011175          372 QNLLGEGGFGSVYKGYLPDG--------REVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIY  442 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g--------~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~l~g~~~~~~~~~lV~  442 (492)
                      .+.|+.|---.+|+..+.++        +.|.|++.- . .....+..+|.++++.|.-.+| -+++++|.  +  .+||
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~-~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~--~--g~I~  120 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-N-PETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLE  120 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-S-CCCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEE
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-C-cchhhHHHHHHHHHHHHHhCCCCCeEEEEcC--C--ceEE
Confidence            35688888899999886432        456666654 2 2334466789999998854455 48888763  2  6899


Q ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          443 DYVPNNTLYFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       443 Ey~~~GsL~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      ||+.|..|...          ....-.++.+||+.|+-||.
T Consensus       121 efi~g~~l~~~----------d~~~~~~~~~iA~~La~lH~  151 (395)
T d1nw1a_         121 EYIPSRPLSCH----------EISLAHMSTKIAKRVAKVHQ  151 (395)
T ss_dssp             CCCCEEECCTT----------GGGSHHHHHHHHHHHHHHTT
T ss_pred             EEeccccCChh----------hccchhhhHHHHHHHHHHhh
Confidence            99987544211          11123466778888888886

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.41  Score=44.44  Aligned_cols=69  Identities=10%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             ceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHHHHHhCCCCcc--c---cee--eEEEeCCeEEEEEecCCCCC
Q 011175          380 FGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL--V---SLV--GYCISDDRRLLIYDYVPNNT  449 (492)
Q Consensus       380 fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI--v---~l~--g~~~~~~~~~lV~Ey~~~Gs  449 (492)
                      -..||+....+|+.|++|+.+.+ ....+++..|+++|..|...+|  +   .+-  .++...+..+.|++|+.|..
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~  110 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQ  110 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEE
T ss_pred             cceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcC
Confidence            35899999989999999998643 3345678889988888753332  1   111  13345677889999998753

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=1  Score=42.80  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=57.8

Q ss_pred             cceeccCCceeEEEEEcCCCCEEEEEEcccCCCcchHHHHHHHH-HHHh-CCCCcccceeeEEEe----CCeEEEEEecC
Q 011175          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVE-IISR-IHHRHLVSLVGYCIS----DDRRLLIYDYV  445 (492)
Q Consensus       372 ~~~LG~G~fG~Vy~g~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~-il~~-l~HpNIv~l~g~~~~----~~~~~lV~Ey~  445 (492)
                      .+..+.|..|..|.-..  +..+.||.++..+.+...+++.+.. .|.+ -.|--|++++|++.-    ....+|||+.+
T Consensus        94 ~~~~s~GkSGs~F~~t~--D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~~~~~fvVM~Nl  171 (383)
T d1bo1a_          94 INSDSQGRCGTRFLTTY--DRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNV  171 (383)
T ss_dssp             EECCCC----CCEEECT--TSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETTEEEEEEEEECS
T ss_pred             ccccccCCcCCeEEEec--CCcEEEEEeCHHHHHHHHHHHHHHHHHHHhcCCCcCHHhhheeeEEEeCCceEEEEEEecc
Confidence            34466788887776433  4468899986432121222222222 2222 235668899998742    22357899965


Q ss_pred             CCCCH-------------------------------HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 011175          446 PNNTL-------------------------------YFHLHGEGRPVLDWATRVKIAAGAARGLAYLHE  483 (492)
Q Consensus       446 ~~GsL-------------------------------~~~l~~~~~~~l~~~~~l~ia~qIa~gL~YLH~  483 (492)
                      -.+.+                               .+++....+..++...+..+..||.+-.+||.+
T Consensus       172 f~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~  240 (383)
T d1bo1a_         172 FSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ  240 (383)
T ss_dssp             SCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcccceeEeccCcccccCcCcccccccchhhhhHHHHhccCCeeeCHHHHHHHHHHHHHHHHHHHH
Confidence            42221                               112222223334555667788888888888865