Citrus Sinensis ID: 011212

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLIERELEDIEIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
cEEEEccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
cccHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHccccccccccccHEEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHcHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
mflagkveetprplkDVIIVSYEIihkkdstapqrIRQQKEVYEQQKELILLGERVVLATLGfdlnvhhpyKPLVEAIKKFKVAQNALAQVAWNFVNDGlrtslclqfkphhIAAGAIFLAAKFLKvklpsdgdkvwwqefdvtprQLEEVSNQMLELYeqnrvpqsqgsevegsaggasshrpqktpaaaeeqaskqtssrsatehshpenngassrtaqnnqsnddgsgemgsvitdhkadaetkdnqhheqlsqkenvrevpnkskSASERIAEDqgraggrhnnaeagewrddgashkssaiggrnldiregpvgqspkdAIKMIDEDKVKAIREKRrksrgeptrkkdfmdedDLIEREledieipvddekmKREQRQSwskshensdhgkghgevgdgnhlgtkghssrgleaenaeegemvdgspmlnsrkrkagspvdrqsegkkqhdymssynhdniedghkmsrpsysdreyRRHAQENHL
mflagkveetprplkdVIIVSYEIihkkdstapqrirQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQAskqtssrsatehshpenngassrtaqnnqsnddGSGEMGSVITDHKADAETkdnqhheqlsqkenvrevpnksksASERIaedqgraggrhnnaeagewrddgashkssaiggrnldiregpvgqspkdaikmidedkvkairekrrksrgeptrkkdfmdeddliereledieipvddekmkREQRQSwskshensdhgkghgevgdgnhlGTKGHSSrgleaenaeegemvdgspmlnsrkrkagspvdrqsegkkqhdymssynhdniedghkmsrpsysdreyrrhaqenhl
MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPqsqgsevegsaggassHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMdeddliereledieiPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
*************LKDVIIVSYEIIHK**************VYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQ******************************************************************************************************************************************************************************************************************************************************************************************************************************************
MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQN*********************************************************************EMGSVITDHKAD******************************************HNNAEAGE**********SAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIRE**********RKKDFMDEDDLIERELEDIEIPVDDE***********************GEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLN********************DYMSSYNHDNIEDGHKMSR*****************
MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVP***GS*VEGSAG*****************************************************************************************************************************************************KMIDEDKVKAIREKRRKS***PTRKKDFMDEDDLIERELEDIEIPVDDEKMK*****************************************************************************************************************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGASSHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITDHKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDDLIERELEDIEIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLEAENAEEGEMVDGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPSYSDREYRRHAQENHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
Q9FKE6579 Cyclin-T1-5 OS=Arabidopsi yes no 0.928 0.787 0.615 1e-151
Q8GYM6541 Cyclin-T1-4 OS=Arabidopsi no no 0.861 0.781 0.584 1e-137
Q2RAC5490 Cyclin-T1-3 OS=Oryza sati yes no 0.710 0.712 0.529 1e-112
Q2QQS5543 Cyclin-T1-4 OS=Oryza sati yes no 0.747 0.675 0.541 1e-107
Q56YF8460 Cyclin-T1-2 OS=Arabidopsi no no 0.409 0.436 0.573 4e-55
Q0E474446 Cyclin-T1-1 OS=Oryza sati no no 0.368 0.405 0.520 1e-51
Q6Z7H3630 Cyclin-T1-2 OS=Oryza sati no no 0.319 0.249 0.550 7e-49
Q9C8P7247 Putative cyclin-T1-1 OS=A no no 0.327 0.651 0.485 5e-41
Q8LBC0317 Cyclin-T1-3 OS=Arabidopsi no no 0.317 0.492 0.468 6e-33
Q9JJA7518 Cyclin-L2 OS=Mus musculus yes no 0.323 0.306 0.361 5e-24
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function desciption
 Score =  536 bits (1382), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 309/502 (61%), Positives = 371/502 (73%), Gaps = 46/502 (9%)

Query: 1   MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
           MFLAGKVEETPRPLKDVI VSYEII+KKD  A Q+I+Q KEVYEQQKELIL GE++VL+T
Sbjct: 110 MFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQ-KEVYEQQKELILNGEKIVLST 168

Query: 61  LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 120
           LGFDLNV+HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct: 169 LGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 228

Query: 121 AAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGAS 180
           AAKFLKVKLPSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP SQGSEVE S GG S
Sbjct: 229 AAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQGSEVESSVGGGS 288

Query: 181 SHRPQKTPAAA--EEQASKQTSS-RSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVI 237
           + RP    A +  E   S+QTSS RS  E S+ +N+G SS+    NQ+N++G GE  +V 
Sbjct: 289 AQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGSSKGVL-NQNNENGGGEAANVS 347

Query: 238 TDHKADA--ETKDNQHHEQL--SQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGE 293
            D+K +   ETK++  H +   + K+NVRE P+ S+   E   +D       ++  E GE
Sbjct: 348 VDNKEEIERETKESSLHLESHPAHKDNVREAPHNSRPLVEGPGKD-------NSEREGGE 400

Query: 294 WRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKD 353
            +DDGA HKS     RN+D+ +  + QSPKD +K++  DKVKA REK +K  GE TRKKD
Sbjct: 401 LQDDGAVHKS-----RNVDVGDALISQSPKD-LKLL-RDKVKAKREKAKKLLGERTRKKD 453

Query: 354 FMDEDDLIERELEDIEIPVDDEKMKREQRQSWSKSHENSD-HGKGHGEVGDGNHLGTKGH 412
            MDEDDLIERELED+++ V+DEK K  + QS  K+ ENSD  G  HGE+     L  KG 
Sbjct: 454 LMDEDDLIERELEDVQLAVEDEKTKERKVQSRPKA-ENSDLMGTEHGEI-----LDVKG- 506

Query: 413 SSRGLEAENAEEGEMVDG--SPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGH 470
                E +N EEGEMV+   SPM++SRKRK GSP ++QSEGK++H      N +N E+ H
Sbjct: 507 -----EVKNTEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRRH------NSENGEESH 555

Query: 471 KMSRPS--YSDREYRRHAQENH 490
           K SR S  + DRE+RRH+QEN+
Sbjct: 556 KTSRGSSHHGDREHRRHSQENN 577

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
449465834 657 PREDICTED: cyclin-T1-5-like [Cucumis sat 0.985 0.736 0.660 1e-176
449487704574 PREDICTED: LOW QUALITY PROTEIN: cyclin-T 0.938 0.803 0.632 1e-163
359494525 623 PREDICTED: cyclin-T1-5-like isoform 1 [V 0.975 0.768 0.631 1e-158
356521602567 PREDICTED: cyclin-T1-5-like [Glycine max 0.914 0.791 0.667 1e-158
356576769568 PREDICTED: cyclin-T1-5-like [Glycine max 0.912 0.788 0.660 1e-155
30694715579 cyclin-T1-5 [Arabidopsis thaliana] gi|14 0.928 0.787 0.615 1e-150
9759604583 unnamed protein product [Arabidopsis tha 0.928 0.782 0.615 1e-149
238481486590 cyclin-T1-5 [Arabidopsis thaliana] gi|33 0.928 0.772 0.615 1e-149
297791271577 cyclin family protein [Arabidopsis lyrat 0.922 0.785 0.616 1e-149
255544658570 Cyclin-L2, putative [Ricinus communis] g 0.975 0.840 0.583 1e-148
>gi|449465834|ref|XP_004150632.1| PREDICTED: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/495 (66%), Positives = 378/495 (76%), Gaps = 11/495 (2%)

Query: 1   MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
           MFLAGKVEETPRPLKDVIIVSYEIIH K+  A QRI+Q KEVYEQQKELILLGERVVLAT
Sbjct: 170 MFLAGKVEETPRPLKDVIIVSYEIIHTKNPGAAQRIKQ-KEVYEQQKELILLGERVVLAT 228

Query: 61  LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 120
           L FDLN+HHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct: 229 LAFDLNIHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 288

Query: 121 AAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPQSQGSEVEGSAGGAS 180
           AAKFLKVKLPSDG+KVWWQEFDVTPR LEEVSNQMLELYEQNRVP +QGSEV+GS  G  
Sbjct: 289 AAKFLKVKLPSDGEKVWWQEFDVTPRHLEEVSNQMLELYEQNRVPVAQGSEVDGSTAGGP 348

Query: 181 SH-RPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVITD 239
           SH    K  A  EEQ SKQ SS SA EHS+ +N+G   R AQN   ++  + E GS IT 
Sbjct: 349 SHPNVAKATATTEEQTSKQMSSCSAPEHSYGDNHGIPQRAAQNLGKSNGTATEGGSTITG 408

Query: 240 HKADAETKDNQHHEQLSQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGEWRDDGA 299
           +K D E  D+ H  ++  K+N +++ + ++S  E + E++ R   +    EAGEWRDDG 
Sbjct: 409 YKVDPELTDSYHIAEMPYKDNSKDISDITRSVVEHVGEEKERNTSKSETVEAGEWRDDGV 468

Query: 300 SHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKDFMDEDD 359
           SHKSS I  RN+++REGP+GQSPK+AIKMID DKVKA  EKRRKSRGE +RKKD MDEDD
Sbjct: 469 SHKSSIIVSRNVEVREGPIGQSPKEAIKMIDRDKVKAALEKRRKSRGEISRKKDVMDEDD 528

Query: 360 LIERELED-IEIPVDDEKMKREQRQSWSKSHENSDHGKGHGEVGDGNHLGTKGHSSRGLE 418
           LIERELED IE+  +DEK +R      SK  +N D GK   E    +H GTK H+S G +
Sbjct: 529 LIERELEDGIELAAEDEKNRR------SKVIDNQDDGKVREESSSVHHAGTKNHTSWGAK 582

Query: 419 AEN-AEEGEMV-DGSPMLNSRKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGHKMSRPS 476
           AE+  EEGEM+ D SP LNSRKRKAG   D  +EGKK +D MS+ +H  ++DG+  +R  
Sbjct: 583 AESVVEEGEMLDDASPALNSRKRKAGRSPDWHNEGKKWNDSMSNNHHHALDDGNCKNRSI 642

Query: 477 YSDREYRRHAQENHL 491
           YSDRE +RHA ENHL
Sbjct: 643 YSDRELKRHAHENHL 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449487704|ref|XP_004157759.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359494525|ref|XP_002268838.2| PREDICTED: cyclin-T1-5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521602|ref|XP_003529443.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|356576769|ref|XP_003556502.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|30694715|ref|NP_199332.2| cyclin-T1-5 [Arabidopsis thaliana] gi|148887348|sp|Q9FKE6.2|CCT15_ARATH RecName: Full=Cyclin-T1-5; Short=CycT1;5; AltName: Full=Protein AtCycT-like1 gi|332007831|gb|AED95214.1| cyclin-T1-5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759604|dbj|BAB11392.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238481486|ref|NP_001154763.1| cyclin-T1-5 [Arabidopsis thaliana] gi|332007832|gb|AED95215.1| cyclin-T1-5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791271|ref|XP_002863520.1| cyclin family protein [Arabidopsis lyrata subsp. lyrata] gi|297309355|gb|EFH39779.1| cyclin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255544658|ref|XP_002513390.1| Cyclin-L2, putative [Ricinus communis] gi|223547298|gb|EEF48793.1| Cyclin-L2, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:2153358590 AT5G45190 [Arabidopsis thalian 0.926 0.771 0.520 1.1e-110
TAIR|locus:2122975541 CYCT1;4 [Arabidopsis thaliana 0.537 0.487 0.663 8.2e-106
TAIR|locus:2122940460 CYCT1;2 [Arabidopsis thaliana 0.541 0.578 0.449 5.6e-52
DICTYBASE|DDB_G0286617405 cycK "putative K-type cyclin" 0.529 0.641 0.355 3.4e-38
TAIR|locus:2008698247 CYCT1;1 "cyclin T1;1" [Arabido 0.317 0.631 0.493 1.5e-37
TAIR|locus:2196919317 CYCT1;3 "cyclin T 1;3" [Arabid 0.323 0.501 0.466 9.8e-32
UNIPROTKB|G3V5E1378 CCNK "Cyclin-K" [Homo sapiens 0.427 0.555 0.321 7e-23
RGD|1309149520 Ccnl2 "cyclin L2" [Rattus norv 0.698 0.659 0.247 1.4e-22
UNIPROTKB|Q5I0H5520 Ccnl2 "Cyclin-L2" [Rattus norv 0.698 0.659 0.247 1.4e-22
UNIPROTKB|E2R4K2523 CCNL2 "Uncharacterized protein 0.784 0.736 0.244 7e-22
TAIR|locus:2153358 AT5G45190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 252/484 (52%), Positives = 308/484 (63%)

Query:     1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
             MFLAGKVEETPRPLKDVI VSYEII+KKD  A Q+I+Q KEVYEQQKELIL GE++VL+T
Sbjct:   121 MFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQ-KEVYEQQKELILNGEKIVLST 179

Query:    61 LGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 120
             LGFDLNV+HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct:   180 LGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 239

Query:   121 AAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPXXXXXXXXXXXXXXX 180
             AAKFLKVKLPSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP               
Sbjct:   240 AAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQGSEVESSVGGGS 299

Query:   181 XHRPQKTPAAAEEQ--ASKQTSS-RSATEHSHPENNGASSRTAQNNQSNDDGSGEMGSVI 237
               RP    A + ++   S+QTSS RS  E S+ +N+G SS+   N Q+N++G GE  +V 
Sbjct:   300 AQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGSSKGVLN-QNNENGGGEAANVS 358

Query:   238 TDHKADAE--TKDNQHHEQL--SQKENVREVPNKSKSASERIAEDQGRAGGRHNNAEAGE 293
              D+K + E  TK++  H +   + K+NVRE P+ S+   E   +D       ++  E GE
Sbjct:   359 VDNKEEIERETKESSLHLESHPAHKDNVREAPHNSRPLVEGPGKD-------NSEREGGE 411

Query:   294 WRDDGASHKSSAIGGRNLDIREGPVGQSPKDAIKMIDEDKVKAIREKRRKSRGEPTRKKD 353
              +DDGA HKS     RN+D+ +  + QSPKD +K++  DKVKA REK +K  GE TRKKD
Sbjct:   412 LQDDGAVHKS-----RNVDVGDALISQSPKD-LKLL-RDKVKAKREKAKKLLGERTRKKD 464

Query:   354 FMXXXXXXXXXXXXXXXPVDDEKMKREQRQSWSKSHENSD-HGKGHGEVGDGNHLGTKGH 412
              M                V+DEK K  + QS  K+ ENSD  G  HGE+ D    G   +
Sbjct:   465 LMDEDDLIERELEDVQLAVEDEKTKERKVQSRPKA-ENSDLMGTEHGEILDVK--GEVKN 521

Query:   413 SSRGLEAENAEEGEMVDGSPMLNS--RKRKAGSPVDRQSEGKKQHDYMSSYNHDNIEDGH 470
             +  G    N     M      + S   K+  G        G++ H      +H    +  
Sbjct:   522 TEEGEMVNNNVSPMMHSRKRKMGSPPEKQSEGKRRHNSENGEESHKTSRGSSHHGDREHR 581

Query:   471 KMSR 474
             + S+
Sbjct:   582 RHSQ 585
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009615 "response to virus" evidence=IEP
GO:0009908 "flower development" evidence=IMP
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0048366 "leaf development" evidence=IGI
GO:0050792 "regulation of viral reproduction" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2122975 CYCT1;4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122940 CYCT1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286617 cycK "putative K-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2008698 CYCT1;1 "cyclin T1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196919 CYCT1;3 "cyclin T 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3V5E1 CCNK "Cyclin-K" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309149 Ccnl2 "cyclin L2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5I0H5 Ccnl2 "Cyclin-L2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4K2 CCNL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2RAC5CCT13_ORYSJNo assigned EC number0.52900.71070.7122yesno
Q2QQS5CCT14_ORYSJNo assigned EC number0.54130.74740.6758yesno
Q9FKE6CCT15_ARATHNo assigned EC number0.61550.92870.7875yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__277__AT5G45190.1
annotation not avaliable (577 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 4e-22
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-10
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-08
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 6e-07
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 8e-04
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 96.0 bits (239), Expect = 4e-22
 Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 2   FLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATL 61
           +LA KVE+TPR   D+ I S+E                 E  +  +E IL  E  +L  L
Sbjct: 96  YLACKVEDTPR---DISIESFEARDL-----------WSEEPKSSRERILEYEFELLEAL 141

Query: 62  GFDLNVHHPYKPLVEAIKKFKVAQNA-LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 120
            FDL+VHHPYK L   +K  +      L Q+AW  +ND LRT LCL + PH IA  A+ +
Sbjct: 142 DFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIALAALLI 201

Query: 121 AAKFLKVKLPSDGDKV 136
           A + L + +    D V
Sbjct: 202 ACEVLGMPIIKLLDFV 217

Length = 297
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0835367 consensus Cyclin L [General function prediction on 99.95
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.9
TIGR00569305 ccl1 cyclin ccl1. University). 99.88
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.81
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.38
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.27
KOG0653391 consensus Cyclin B and related kinase-activating p 99.11
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.06
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.06
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.02
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 98.95
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 98.69
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.64
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.49
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.49
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.01
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.18
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 97.01
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.84
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.76
TIGR00569305 ccl1 cyclin ccl1. University). 92.55
KOG1598521 consensus Transcription initiation factor TFIIIB, 92.18
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 87.92
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 87.53
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 82.75
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 82.65
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 82.6
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 81.82
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-34  Score=294.55  Aligned_cols=164  Identities=55%  Similarity=0.893  Sum_probs=150.6

Q ss_pred             CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011212            1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK   80 (491)
Q Consensus         1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~   80 (491)
                      ||||||+||+|++++|||.|+|.++++.+      +. ..+.|+++|+.|+.+|++||++|+|||+|.|||.||++|++.
T Consensus        89 lfLAgKvEetp~kl~dIi~~s~~~~~~~~------~~-~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~  161 (323)
T KOG0834|consen   89 LFLAGKVEETPRKLEDIIKVSYRYLNPKD------LE-LEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKK  161 (323)
T ss_pred             HHHHhhcccCcccHHHHHHHHHHHcCccc------cc-HHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHH
Confidence            69999999999999999999999998754      11 578999999999999999999999999999999999999999


Q ss_pred             hcccHH---HHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccC--CCHHHHHHHHHHH
Q 011212           81 FKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFD--VTPRQLEEVSNQM  155 (491)
Q Consensus        81 L~~~~~---~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lg--vt~eqL~eI~~eI  155 (491)
                      ++.+..   .++++||+|+||+++|++||+|+|++||+|||+||+++.++.+|...+..||..|+  ++.+.|++|+.++
T Consensus       162 l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~  241 (323)
T KOG0834|consen  162 LKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEF  241 (323)
T ss_pred             hhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHH
Confidence            987654   59999999999999999999999999999999999999999999876668999998  9999999999999


Q ss_pred             HHHHhhCCCCCCCCCc
Q 011212          156 LELYEQNRVPQSQGSE  171 (491)
Q Consensus       156 LeLY~~~r~~~~~~~~  171 (491)
                      +.+|...........+
T Consensus       242 l~~y~~~~~~~~~~~~  257 (323)
T KOG0834|consen  242 LDLYEQTPQRNHLLLN  257 (323)
T ss_pred             HHHHhhcccccccccc
Confidence            9999988776655544

>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
2i53_A258 Crystal Structure Of Cyclin K Length = 258 2e-23
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 1e-18
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 3e-18
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 4e-18
2w2h_A264 Structural Basis Of Transcription Activation By The 4e-18
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 5e-18
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 2e-17
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 6e-10
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 2e-05
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 18/172 (10%)
Query: 1   MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
           +FLAGKVEETP+  KD+I  +  +++           Q  +  +  KE +++ ER++L T
Sbjct: 91  LFLAGKVEETPKKCKDIIKTARSLLNDV---------QFGQFGDDPKEEVMVLERILLQT 141
Query: 61  LGFDLNVHHPYKPLVEAIKKFKVAQNA---LAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 117
           + FDL V HPY+ L++  K+ K  +N    L Q+AW FVND L T+L LQ++P  IA   
Sbjct: 142 IKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201
Query: 118 IFLAAKFLKVKLPSDGDKV----WWQEF--DVTPRQLEEVSNQMLELYEQNR 163
           ++LA +  K ++     K     WW++F  DV    LE++ +Q+L+LY Q +
Sbjct: 202 MYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 4e-54
2ivx_A257 Cyclin-T2; transcription regulation, cell division 9e-48
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 8e-47
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 7e-45
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 7e-44
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-40
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 2e-09
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 8e-09
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-08
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-08
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 3e-08
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-07
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  181 bits (461), Expect = 4e-54
 Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 18/177 (10%)

Query: 1   MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLAT 60
           +FLAGKVEETP+  KD+I  +  +++           Q  +  +  KE +++ ER++L T
Sbjct: 91  LFLAGKVEETPKKCKDIIKTARSLLND---------VQFGQFGDDPKEEVMVLERILLQT 141

Query: 61  LGFDLNVHHPYKPLVEAIKKFKVAQNA---LAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 117
           + FDL V HPY+ L++  K+ K  +N    L Q+AW FVND L T+L LQ++P  IA   
Sbjct: 142 IKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201

Query: 118 IFLAAKFLKVKLPSDGDKV----WWQEF--DVTPRQLEEVSNQMLELYEQNRVPQSQ 168
           ++LA +  K ++     K     WW++F  DV    LE++ +Q+L+LY Q +     
Sbjct: 202 MYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPH 258
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.96
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.95
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.94
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.94
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.92
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.9
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.85
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.84
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.84
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.84
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.83
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.82
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.79
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.72
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.72
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.66
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.63
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.07
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.82
1c9b_A207 General transcription factor IIB; protein-DNA comp 96.4
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 95.39
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 94.6
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 94.52
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.38
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 94.29
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 94.2
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 94.17
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 94.02
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 93.68
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 93.66
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 93.18
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 92.86
2ivx_A257 Cyclin-T2; transcription regulation, cell division 92.84
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 92.7
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 91.85
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 91.54
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=99.96  E-value=9.3e-29  Score=239.94  Aligned_cols=157  Identities=32%  Similarity=0.596  Sum_probs=140.7

Q ss_pred             CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011212            1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK   80 (491)
Q Consensus         1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~   80 (491)
                      ||||||+||+|++++||+.+++.+.++..|.    +...+..|+.++++|+.||+.||++|+|+|.+++||.||.+|++.
T Consensus        81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~  156 (257)
T 2ivx_A           81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL----LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQL  156 (257)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC----CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred             HHHHhccccCCcCHHHHHHHHHHHhccCCCC----CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHH
Confidence            6899999999999999999999998766543    222467899889999999999999999999999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhhc-CCccccccChHHHHHHHHHHHHHHhCcCCCCC-Ccccchhcc--CCCHHHHHHHHHHHH
Q 011212           81 FKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQML  156 (491)
Q Consensus        81 L~~~~~~L~qlAw~fLnDSl-~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~-~~~~W~e~L--gvt~eqL~eI~~eIL  156 (491)
                      ++.. ..+.++||+|+++++ .+++|+.|+|++||+||||+|+.+++..+|.. ++.+||..|  ++++++|.+|+.+|+
T Consensus       157 l~~~-~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~  235 (257)
T 2ivx_A          157 VRAS-KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFL  235 (257)
T ss_dssp             TTCC-HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHH
T ss_pred             hCCC-cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHH
Confidence            9876 479999999999998 58999999999999999999999999988863 346799988  799999999999999


Q ss_pred             HHHhhC
Q 011212          157 ELYEQN  162 (491)
Q Consensus       157 eLY~~~  162 (491)
                      ++|...
T Consensus       236 ~~~~~~  241 (257)
T 2ivx_A          236 QILEKT  241 (257)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            999753
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 6e-37
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 3e-35
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 1e-25
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-13
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-13
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 6e-09
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 6e-37
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 9/106 (8%)

Query: 69  HPYKPLVEAIKKFKVAQNA---LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFL 125
           HPY+ L++  K+ K  +N    L Q+AW FVND L T+L LQ++P  IA   ++LA +  
Sbjct: 2   HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLC 61

Query: 126 KVKLPSDGD----KVWWQEF--DVTPRQLEEVSNQMLELYEQNRVP 165
           K ++         + WW++F  DV    LE++ +Q+L+LY Q +  
Sbjct: 62  KFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQ 107
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.86
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.42
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.09
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.96
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.92
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.47
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.01
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.96
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.68
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.63
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 97.07
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 96.88
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 96.78
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 96.36
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.54
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 95.47
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 95.41
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 95.11
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 93.54
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 93.46
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 92.85
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 92.67
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 92.46
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 89.41
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.9e-22  Score=171.68  Aligned_cols=98  Identities=38%  Similarity=0.726  Sum_probs=88.9

Q ss_pred             cCcHHHHHHHHHHhcccH---HHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCC----cccchhc
Q 011212           68 HHPYKPLVEAIKKFKVAQ---NALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDG----DKVWWQE  140 (491)
Q Consensus        68 ~hPhkfLv~yLk~L~~~~---~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~----~~~W~e~  140 (491)
                      .|||+||+.|++.|+.+.   ..++|+||+|+||+++|++||+|+|++||+||||||++++++.+|...    +.+||+.
T Consensus         1 eHP~~~L~~~~~~l~~~~~~~~~l~q~AW~~lNDs~rT~lcL~~~P~~IA~a~I~lA~~~~~~~ip~~~~~~~~~~W~~~   80 (110)
T d2i53a2           1 EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ   80 (110)
T ss_dssp             CCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG
T ss_pred             CCCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCchhccCcHHHHHHHHHHHHHHhCCCCCCcccCcccccHHHH
Confidence            489999999999998764   369999999999999999999999999999999999999999988532    3579999


Q ss_pred             c--CCCHHHHHHHHHHHHHHHhhCCCC
Q 011212          141 F--DVTPRQLEEVSNQMLELYEQNRVP  165 (491)
Q Consensus       141 L--gvt~eqL~eI~~eILeLY~~~r~~  165 (491)
                      |  +++.++|.+|+.+|+++|+.++.+
T Consensus        81 f~~dvt~e~i~~i~~~il~lY~~~k~~  107 (110)
T d2i53a2          81 FVQDVPVDVLEDICHQILDLYSQGKQQ  107 (110)
T ss_dssp             TSSSCCHHHHHHHHHHHHTTTSSSCCC
T ss_pred             HHccCCHHHHHHHHHHHHHHHcccccc
Confidence            9  899999999999999999987654
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure