Citrus Sinensis ID: 011275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHHHHHHccccEEEEccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHEEHEHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHcccHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVTevsppfvrgtyGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCaesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAsssyipgsasLYLSVGGMLMFVLTFAlgagpvpslllpeifpSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVEtkgkslqeieiallpqe
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGllflrlleqlgpqllYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI******
Disordered Region (DISOPRED)
************************************************SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS*********************LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL****
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered Region (DISPRO)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	0.997	0.989	0.747	0.0
Q2V4B9	495	Probable plastidic glucos	no	no	0.983	0.971	0.687	0.0
Q0WVE9	524	Probable plastidic glucos	no	no	0.907	0.847	0.446	1e-105
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.961	0.860	0.420	1e-100
C0SPB2	457	Putative metabolite trans	yes	no	0.854	0.914	0.314	3e-49
P46333	461	Probable metabolite trans	no	no	0.858	0.911	0.315	7e-49
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.860	0.864	0.308	2e-46
P15729	468	Glucose transport protein	N/A	no	0.862	0.901	0.317	4e-46
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.846	0.880	0.308	9e-46
P87110	557	Myo-inositol transporter	yes	no	0.928	0.815	0.282	1e-45

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/492 (74%), Positives = 424/492 (86%), Gaps = 4/492 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSRI
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRI 420

Query: 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK 476
           RAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ETKGK
Sbjct: 421 RAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGK 480

Query: 477 SLQEIEIALLPQ 488
           +LQEIEI+LL +
Sbjct: 481 TLQEIEISLLAK 492

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/486 (68%), Positives = 392/486 (80%), Gaps = 5/486 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  +     KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
            LFGYHLGVVNE LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GAS+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QIATC+GL+GSL  GIP K+  GWWRICFW+S VPAA+L + M  C ESP WL+K+GR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEA FEKLLGGS+VK+++AEL K DRGDD D  K  ELL+GR FRVVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVS+ +Q  A +S      +L+LSVGGML+FVL+FA GAGPVPSLLL EI P R+RA A
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           +AVC++VHWVINFFVGLLFLR+LEQLG  LL +IFG FC++AV FV++NVVETKGKSLQE
Sbjct: 426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query: 481 IEIALL 486
           IEI+LL
Sbjct: 486 IEISLL 491

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 292/446 (65%), Gaps = 2/446 (0%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
            F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
            H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query: 344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403
           L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPV 435

Query: 404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 463
             L++PE+  +R R K M    SVHWV NF VGL FL L+E+ G   +Y+ FG+  L+A 
Sbjct: 436 TGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAA 495

Query: 464 AFVKRNVVETKGKSLQEIEIALLPQE 489
           AF     VETKG+SL+EIE++L  ++
Sbjct: 496 AFSHLFTVETKGRSLEEIELSLNSRD 521

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/478 (42%), Positives = 299/478 (62%), Gaps = 8/478 (1%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
            IGA + AT +++  M++GR + G G+G+   +  LY++E+SP  +RG  G+  Q+  C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           G++ +L+ G+P+     WWR  F V+++P+ +L + M F  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           + L G   V   + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364

Query: 309 FYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
            Y+S+SVF+SAG+ S + A+  VG +N+ G+ VA  LMDK+GRK+LL  SF  MA+SM +
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLL 424

Query: 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427
              + +     + S  L+V G +++VL+F+LGAGPVP+LLLPEIF SRIRAKA+A+ + +
Sbjct: 425 LSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM 484

Query: 428 HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL 485
           HW+ NF +GL FL ++ + G   +Y  F   C++AV ++  NVVETKG+SL+EIE+AL
Sbjct: 485 HWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 225/429 (52%), Gaps = 11/429 (2%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  +  +  +LG N  T  EGLVVS  L GA +GS  +G + D  GR
Sbjct: 15  LGGALYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGR 72

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT 177
           ++A    AL   IG    A   N   M+L R ++G  +G   T+  LY++E++P   RG 
Sbjct: 73  KKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGA 132

Query: 178 YGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK 237
             +  Q+   +G++ S ++     + A  WR    ++ VP+ +L + ++F  ESP WL+ 
Sbjct: 133 LSSLNQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFT 191

Query: 238 KGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTL 296
            G  ++A+   EKL G   +   + ++ + ++ D+G + +    L+    R   I G  L
Sbjct: 192 NGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE----LFDPWVRPALIAGLGL 247

Query: 297 FALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 353
             LQQ  G N I Y++   F + G    +S L  V +G  N+L ++VA+ ++DK+GRK L
Sbjct: 248 AFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPL 307

Query: 354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 413
           L +    M +S+ +    +  +    A+ + +V  + +F++ FA+  GPV  ++LPE+FP
Sbjct: 308 LLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFP 367

Query: 414 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473
             +R     V   +  V    V L +  L+E +G   L+ I+    +MA  FV+  V ET
Sbjct: 368 LHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTET 427

Query: 474 KGKSLQEIE 482
           KG+SL+EIE
Sbjct: 428 KGRSLEEIE 436

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 232/434 (53%), Gaps = 14/434 (3%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
           R+   + ++  IIGA   A ++  IGML+  R ++G  +G    +  +Y++E++P  +RG
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
           T G    +    G++ + ++          WR    ++ VPA +L + + F  ESP WL 
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191

Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGS 294
           K+G    +E E  +++  +H    +  EL+++ +G+         +L  +  R ++ IG 
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGV 247

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRK 351
            L   QQ  GIN + Y++ ++F  AGL   +S L  + +GI N++  + AM+L+D++GRK
Sbjct: 248 GLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRK 307

Query: 352 ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEI 411
            LL W    + +S+A       +    +++ +++V  + ++++ +    GPV  +L+PE+
Sbjct: 308 KLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPEL 367

Query: 412 FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV 471
           FPS+ R  A      V    N  V L+F  +L  +G   ++ +F   CL++  F    V 
Sbjct: 368 FPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVP 427

Query: 472 ETKGKSLQEIEIAL 485
           ETKGKSL+EIE +L
Sbjct: 428 ETKGKSLEEIEASL 441

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 235/441 (53%), Gaps = 20/441 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 52  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
           P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
           + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query: 349 GRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAG 401
           GR+ LL  S   M +S+ I  AA     ++   + +Y     LSV G++  V+ F+LG G
Sbjct: 344 GRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMG 403

Query: 402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM 461
           P+P L++ EI P  I+  A ++    +W  ++ + +    LL        ++++G  C  
Sbjct: 404 PIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMT-ANLLLAWSSGGTFTLYGLVCAF 462

Query: 462 AVAFVKRNVVETKGKSLQEIE 482
            V FV   V ETKGK+L+E++
Sbjct: 463 TVVFVTLWVPETKGKTLEELQ 483

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P15729|GLCP_SYNY3 Glucose transport protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gtr PE=3 SV=2

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 229/451 (50%), Gaps = 29/451 (6%)

Query: 55  VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG 114
           VA L  FLFG+   V+N  + +  L   F  ++L  GL VS+ L G+ +G+  +G IAD 
Sbjct: 23  VAALGGFLFGFDTAVINGAVAA--LQKHFQTDSLLTGLSVSLALLGSALGAFGAGPIADR 80

Query: 115 VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV 174
            GR +   L A+   + +  S     +   +  R + G G+G    +A  Y+ EVSP  +
Sbjct: 81  HGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHL 140

Query: 175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W------WRICFWVSIVPAAILC 222
           RG  G+  Q+A   G+  +LL    +  +AG      W      WR  FW  ++PA +  
Sbjct: 141 RGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQNPWLFGAAAWRWMFWTELIPALLYG 200

Query: 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282
           +      ESP +L  +G+  +A A   K+ GG  V S + E+      D     +F +LL
Sbjct: 201 VCAFLIPESPRYLVAQGQGEKAAAILWKVEGG-DVPSRIEEIQATVSLDHKP--RFSDLL 257

Query: 283 YGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLG 337
             R     +V+IG  L ALQQ  GIN IFY+SS +++S G +   S L  V  G  N+L 
Sbjct: 258 SRRGGLLPIVWIGMGLSALQQFVGINVIFYYSSVLWRSVGFTEEKSLLITVITGFINILT 317

Query: 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAI--QVAASSSYIPGSASLYLSVGGMLM---- 391
           ++VA+  +DK GRK LL      M +++ I   V   ++ + G  +L  + G + +    
Sbjct: 318 TLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTAN 377

Query: 392 -FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450
            +V +F    GP+  +LL E+F ++IRA A++V   V W+ NF +   F  LL+ +G   
Sbjct: 378 LYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGLGP 437

Query: 451 LYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 481
            Y ++ T   +++ F+   V ETKGK+L+++
Sbjct: 438 AYGLYATSAAISIFFIWFFVKETKGKTLEQM 468

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 232/447 (51%), Gaps = 33/447 (7%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD 113
            VA   SF+FG  +G  + P++S  L    N +     L  S+   GA IG+ +SG IAD
Sbjct: 37  FVAVSGSFVFGSAIGY-SSPVQS-DLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIAD 94

Query: 114 GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173
            +GRR       +  I+G      ++  I + +GRF+VG GMG+   V  +Y+ E++P  
Sbjct: 95  MIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKG 154

Query: 174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPH 233
           +RG +    Q+  CLG+  + L+G  +      WRI   + ++P  +  + +    ESP 
Sbjct: 155 LRGGFTTVHQLLICLGVSVTYLLGSFIG-----WRILALIGMIPCVVQMMGLFVIPESPR 209

Query: 234 WLYKKGRTAEAEAEFEKLLGGS--------HVKSSLAELSKLDRGDDGDIVKFEELLYGR 285
           WL K G+  E E   ++L G S         +K     L+ L    +G IV   +L   +
Sbjct: 210 WLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDL---SEGSIV---DLFQPQ 263

Query: 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLM 345
           + + + +G  L  LQQ  G+N I +++SS+F+SAG+SS +  + + +  +  + + ++LM
Sbjct: 264 YAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLM 323

Query: 346 DKLGRKALLQWS-------FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL 398
           DK GR+ LL  S        F + +S ++Q     S   G AS YL++ G+L++  +F+L
Sbjct: 324 DKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLS---GDAS-YLALTGVLVYTGSFSL 379

Query: 399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF 458
           G G +P +++ EIFP  I+  A ++   V WV ++ +   F   L    P   + +F T 
Sbjct: 380 GMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTF-NFLMNWNPAGTFYVFATV 438

Query: 459 CLMAVAFVKRNVVETKGKSLQEIEIAL 485
           C   V FV + V ETKG++L+EI+ ++
Sbjct: 439 CGATVIFVAKLVPETKGRTLEEIQYSI 465

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 242/500 (48%), Gaps = 46/500 (9%)

Query: 18  RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
           R+  S  + EE  A      EV + N             W LS     VA +S  LFGY 
Sbjct: 43  REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98

Query: 67  LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
            GV++  L  +  DLG   ++  + L+ S     A I +T SGW+AD VGR+R   LCA 
Sbjct: 99  TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157

Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
            + +IG+ I A +RN+  M++GRF+VG G+GL   +  +Y+TE++P  +RG       + 
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217

Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
              G + +  +    + +   WRI F +   PA    +++ +  ESP +L +     +  
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276

Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHF--------------RVV 290
               K+L   H ++  AE++ K+    +G  V F E    +HF              R +
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRRSL 333

Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
           FIG  L   QQ SG NAI YFS+ +F+S G  + ++ ++ VG  N + ++VA + +D++G
Sbjct: 334 FIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDRIG 393

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSAS-------LYLSVGGMLMFVLTFALGAGP 402
           R+ +L  +   M   +A+  A +  ++P   +        Y+ +  +++F+ ++A G G 
Sbjct: 394 RRRILLCTSAVMIAGLAL-CAIAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIGN 452

Query: 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA 462
           +P     E+FP  +RA       +++WV N  +   FL ++E + P   +++F  FC + 
Sbjct: 453 IP-WQQAELFPMEVRALGAGFSTAINWVGNLIISASFLTMMESITPTGTFALFAGFCFVG 511

Query: 463 VAFVKRNVVETKGKSLQEIE 482
           +        E  G S++ I 
Sbjct: 512 LVTSYFTYPELAGMSIENIH 531

Transporter for myo-inositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
27261731	489	sugar transporter [Citrus unshiu]	1.0	1.0	1.0	0.0
225445194	488	PREDICTED: probable plastidic glucose tr	0.997	1.0	0.807	0.0
255546433	508	sugar transporter, putative [Ricinus com	1.0	0.962	0.789	0.0
224142161	489	predicted protein [Populus trichocarpa]	1.0	1.0	0.803	0.0
449449521	490	PREDICTED: probable plastidic glucose tr	1.0	0.997	0.783	0.0
357500677	490	Sugar transporter [Medicago truncatula]	1.0	0.997	0.767	0.0
356520521	486	PREDICTED: probable plastidic glucose tr	0.983	0.989	0.775	0.0
356531285	486	PREDICTED: probable plastidic glucose tr	0.983	0.989	0.773	0.0
224054374	489	predicted protein [Populus trichocarpa]	1.0	1.0	0.730	0.0
15220399	493	putative plastidic glucose transporter 2	0.997	0.989	0.747	0.0

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLPQE
Sbjct: 481 IEIALLPQE 489

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/489 (80%), Positives = 441/489 (90%), Gaps = 1/489 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL  AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK  ELLYGRHFRVVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF 
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAV+M++QVA +SS+I GS +++LSV GML+FVLTFALGAGPVP LLLPEIFP+RIRAKA
Sbjct: 360 MAVAMSVQVAGASSFISGSGAVFLSVSGMLLFVLTFALGAGPVPGLLLPEIFPNRIRAKA 419

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFL LLEQLGPQLLYS+F TFCLMAV FVKRNVVETKG+SLQE
Sbjct: 420 MAVCMSVHWVINFFVGLLFLPLLEQLGPQLLYSMFCTFCLMAVVFVKRNVVETKGRSLQE 479

Query: 481 IEIALLPQE 489
           IEIALLPQE
Sbjct: 480 IEIALLPQE 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/495 (78%), Positives = 435/495 (87%), Gaps = 6/495 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           +AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D +   ELLYGRHFRVVFIGSTLFALQ
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFALQ 313

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF 
Sbjct: 314 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFFG 373

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +QVA +SSY+ GS +L+LSVGGML FV TFALGAGPVP LLLPEIFPSRIRAKA
Sbjct: 374 MAVSMGLQVAGASSYMAGSGALFLSVGGMLTFVFTFALGAGPVPGLLLPEIFPSRIRAKA 433

Query: 421 MAVCMSVHW------VINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK 474
           MA+CMSVHW      VINFFVGLLFLRLLEQLGPQLLY+IF + C++AV FVKRNV+ETK
Sbjct: 434 MAICMSVHWPISPSQVINFFVGLLFLRLLEQLGPQLLYAIFASSCMLAVVFVKRNVMETK 493

Query: 475 GKSLQEIEIALLPQE 489
           GKSLQEIEIALLPQE
Sbjct: 494 GKSLQEIEIALLPQE 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/489 (80%), Positives = 432/489 (88%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +QV A+SS + GS +LYLSVGGMLMFV TFA+GAGPVP LLLPEIFPSRIRAKA
Sbjct: 361 MAVSMGLQVVAASSNMLGSGTLYLSVGGMLMFVFTFAIGAGPVPGLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFLRLLEQLGP+LLY+IFGTFCLMAV FVKRNV+ETKGKSLQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPRLLYTIFGTFCLMAVVFVKRNVMETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLP E
Sbjct: 481 IEIALLPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/489 (78%), Positives = 426/489 (87%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK  ELL+GRHF+VVFIGSTLFALQ
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAV+MA+QV A S +   S +LYLSVGG LMFVL FALGAGPVP LLLPEIFPSRIRAKA
Sbjct: 361 MAVAMAVQVVAGSYHYSDSGALYLSVGGTLMFVLMFALGAGPVPGLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MA+CMSVHWVINFFVGLLFL+LLE++GPQLLYS F TFCL+AVAFVKRNVVETKGKSLQE
Sbjct: 421 MAICMSVHWVINFFVGLLFLQLLEKMGPQLLYSGFATFCLIAVAFVKRNVVETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLPQ+
Sbjct: 481 IEIALLPQD 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/490 (76%), Positives = 424/490 (86%), Gaps = 1/490 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSS-TFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
           MWG  RE+S++YKRT S+D S+   DVEE   L+ N  + E TNPSWKLS PHVLVAT++
Sbjct: 1   MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60

Query: 60  SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
           SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA  G  LSGWIAD VGRRR
Sbjct: 61  SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120

Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
           AFQLCALPMIIGA++SA T NL GML+GR  VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180

Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
           A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240

Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299
           RTAEAEAEFE+LLG S  K ++++LSK+DRG+D D VKF ELL+G H +VVFIGSTLFAL
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHHSKVVFIGSTLFAL 300

Query: 300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359
           QQLSGINA+FYFSS+VFKSAG+ S  ANV +G+ANL GS+++  LMDKLGRK LL WSFF
Sbjct: 301 QQLSGINAVFYFSSTVFKSAGVPSDFANVCIGVANLTGSIISTGLMDKLGRKVLLFWSFF 360

Query: 360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK 419
            MA+SM IQ   +S+ +P + +LYLSVGGML+FV TFALGAGPVP LLL EIFPSRIRAK
Sbjct: 361 GMAISMIIQATGASTLLPTAGALYLSVGGMLLFVFTFALGAGPVPGLLLTEIFPSRIRAK 420

Query: 420 AMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ 479
           AMA CMSVHWVINFFVGLLFLRLLE+LG QLLYS+F TFC+MAV FVKRNVVETKGKSLQ
Sbjct: 421 AMAFCMSVHWVINFFVGLLFLRLLEKLGAQLLYSMFATFCIMAVIFVKRNVVETKGKSLQ 480

Query: 480 EIEIALLPQE 489
           EIEIALLPQE
Sbjct: 481 EIEIALLPQE 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/481 (77%), Positives = 416/481 (86%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  DVEE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH 428
              ++S +    + Y SVGGM +FVLTFALGAGPVP LLLPEIFPSRIRAKAMAVCMSVH
Sbjct: 366 ATGATSLVSNMGAQYFSVGGMFLFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAVCMSVH 425

Query: 429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQ 488
           WVINFFVGLLFLRLLE+LGPQLLYS+F TFC+MAV FVKRNVVETKGKSL EIEIALLPQ
Sbjct: 426 WVINFFVGLLFLRLLEKLGPQLLYSMFATFCIMAVIFVKRNVVETKGKSLHEIEIALLPQ 485

Query: 489 E 489
           +
Sbjct: 486 D 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/481 (77%), Positives = 417/481 (86%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH 428
              ++S +    + Y SVGGML+FVLTFALGAGPVP LLLPEIFPSRIRAKAMAVCMSVH
Sbjct: 366 ATGATSLVSNVGAQYFSVGGMLLFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAVCMSVH 425

Query: 429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQ 488
           WVINFFVGLLFLRLLE+LGPQLLYS+F  FC+MAV FVKRNVVETKGKSL EIEIALLPQ
Sbjct: 426 WVINFFVGLLFLRLLEKLGPQLLYSMFAIFCIMAVTFVKRNVVETKGKSLHEIEIALLPQ 485

Query: 489 E 489
           +
Sbjct: 486 D 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054374|ref|XP_002298228.1| predicted protein [Populus trichocarpa] gi|222845486|gb|EEE83033.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/489 (73%), Positives = 417/489 (85%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  E  +  KR SSRD  + +D EE++  +  GT  +  NP W+ S  HVLVATLSS
Sbjct: 1   MRGRYVETVVTKKRASSRDFINAYDREESSGHLAIGTAKDAGNPHWRHSLVHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNE LE+IS DLGF+GNT+AEGLVVS CLGGAF+GS  SGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNETLETISFDLGFSGNTMAEGLVVSTCLGGAFVGSIFSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GMLLGRF VGTGMG+GP VAALYVTEVSP +VRGTYG+
Sbjct: 121 FQLCALPMIIGASMSATTKDLWGMLLGRFFVGTGMGIGPPVAALYVTEVSPAYVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QI+TCLGL+GS +IGIP KE  GWWRICFWVS +PAA+L L M FCAESPHWL K+GR
Sbjct: 181 LTQISTCLGLLGSFVIGIPAKETMGWWRICFWVSAIPAAMLALFMEFCAESPHWLLKRGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           + EAEA+FEKLLGGSHVKS++ ELSK DRGD+ D VK  E LYGR+F+VVFIGS LFALQ
Sbjct: 241 STEAEAQFEKLLGGSHVKSAIIELSKSDRGDEVDKVKLSEFLYGRYFKVVFIGSALFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S  AN+ VG++NLLGS++AMV+MDKLGRK LL  SFF 
Sbjct: 301 QLSGINAVFYFSSAVFKSAGVPSDSANICVGVSNLLGSIIAMVMMDKLGRKVLLTGSFFG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +Q  A++S++   A+LYLSVGGML+FVL F+LGAGPVPSLLL EIFPSRIRAKA
Sbjct: 361 MAVSMGLQATAATSFVSSFAALYLSVGGMLLFVLMFSLGAGPVPSLLLSEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           +A+CM+VHWVINFFVGLLFLRLLEQ+GP +LY++FG+FCL+AV FVK+NV+ETKGKSLQE
Sbjct: 421 LAICMAVHWVINFFVGLLFLRLLEQIGPLVLYTVFGSFCLVAVFFVKKNVLETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIAL+P E
Sbjct: 481 IEIALMPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/492 (74%), Positives = 424/492 (86%), Gaps = 4/492 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSRI
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRI 420

Query: 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK 476
           RAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ETKGK
Sbjct: 421 RAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGK 480

Query: 477 SLQEIEIALLPQ 488
           +LQEIEI+LL +
Sbjct: 481 TLQEIEISLLAK 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.993	0.983	0.708	1.1e-183
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.944	0.933	0.681	2.3e-165
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.899	0.839	0.436	3.2e-97
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.889	0.796	0.431	3e-94
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.928	0.720	0.308	1.3e-54
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.860	0.864	0.303	1.7e-52
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.858	0.860	0.307	2.7e-52
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.895	0.946	0.292	8.3e-51
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.680	0.574	0.303	2.3e-50
ZFIN|ZDB-GENE-030829-25	498	slc2a8 "solute carrier family	0.631	0.620	0.291	6.8e-49

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1782 (632.4 bits), Expect = 1.1e-183, P = 1.1e-183
 Identities = 348/491 (70%), Positives = 400/491 (81%)

Query:     1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
             M G QRE S MYK           DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
             SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
             RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
             G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTL 296
             G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIGSTL
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query:   297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
             FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct:   301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query:   357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR 415
             SF  M  S MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSR
Sbjct:   361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSR 420

Query:   416 IRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRNVVETKG 475
             IRAKAMA CMSVHWVINFFVG               YS+F TFCLMAV FVKRNV+ETKG
Sbjct:   421 IRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKG 480

Query:   476 KSLQEIEIALL 486
             K+LQEIEI+LL
Sbjct:   481 KTLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
 Identities = 315/462 (68%), Positives = 369/462 (79%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
             D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct:    30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89

Query:    85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
             GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct:    90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149

Query:   145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
             LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+GSL  GIP K+  
Sbjct:   150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209

Query:   205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct:   210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269

Query:   265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG 324
              K DRGDD D  K  ELL+GR FRVVFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S 
Sbjct:   270 VKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSA 329

Query:   325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL 384
              AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  MAVS+ +Q  A +S      +L+L
Sbjct:   330 SANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFL 389

Query:   385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXX 444
             SVGGML+FVL+FA GAGPVPSLLL EI P R+RA A+AVC++VHWVINFFVG        
Sbjct:   390 SVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLE 449

Query:   445 XXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 486
                     +IFG FC++AV FV++NVVETKGKSLQEIEI+LL
Sbjct:   450 QLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 193/442 (43%), Positives = 281/442 (63%)

Query:    46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
             W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct:    76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query:   106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
              ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct:   136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query:   166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
             ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct:   196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query:   226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
              F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct:   256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query:   285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
              H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct:   316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query:   344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403
             L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV
Sbjct:   376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPV 435

Query:   404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAV 463
               L++PE+  +R R K M    SVHWV NF VG               Y+ FG+  L+A 
Sbjct:   436 TGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAA 495

Query:   464 AFVKRNVVETKGKSLQEIEIAL 485
             AF     VETKG+SL+EIE++L
Sbjct:   496 AFSHLFTVETKGRSLEEIELSL 517

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 188/436 (43%), Positives = 280/436 (64%)

Query:    51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             P V VA L + LFGYHLGVVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G 
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             +AD  GR R FQL A+P+ IGA + AT +++  M++GR + G G+G+   +  LY++E+S
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q+  C+G++ +L+ G+P+     WWR  F V+++P+ +L + M F  E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290
             SP WL ++G+ +EAE   + L G   V   + +LS   +G       + +L   R+++VV
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVV 346

Query:   291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
              +G+ LF  QQL+GINA+ Y+S+SVF+SAG+ S +A +  VG +N+ G+ VA  LMDK+G
Sbjct:   347 SVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMG 406

Query:   350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409
             RK+LL  SF  MA+SM +   + +     + S  L+V G +++VL+F+LGAGPVP+LLLP
Sbjct:   407 RKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLP 466

Query:   410 EIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRN 469
             EIF SRIRAKA+A+ + +HW+ NF +G               Y  F   C++AV ++  N
Sbjct:   467 EIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGN 526

Query:   470 VVETKGKSLQEIEIAL 485
             VVETKG+SL+EIE+AL
Sbjct:   527 VVETKGRSLEEIELAL 542

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 149/483 (30%), Positives = 240/483 (49%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
             ++  TT   +N  E  N N + KLSF    +V  + LS+  FGY+ GV++  +  I    
Sbjct:   152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211

Query:    82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
             G N N   + ++VS  L GA +GS LSG+  D  GR++      L  ++G  + +  +N 
Sbjct:   212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269

Query:   142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
               +L+GR + G G+G+  +V  LY+TE+SPP  RG+ G   Q    LG+M S L    + 
Sbjct:   270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329

Query:   202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
               +  WR  F ++ +P+    +   +  ESP WL  K R  EA+   +K+    HV   L
Sbjct:   330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387

Query:   262 AEL-------SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313
              +L       S L+ +G+D  +  F+   Y ++ ++  IG  L  LQQ  GIN + Y+S 
Sbjct:   388 IDLQITRIRSSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSG 443

Query:   314 SVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI--- 367
              + + AG +   A      VGI  L+  ++++ L+D+ GRK LL      M + +A+   
Sbjct:   444 IILEDAGFAKNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMIIGLAVLGY 503

Query:   368 ---QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC 424
                  +  +  I  +   +++V GM+ F L F++G GP+P+L+  EIFPS+IR KAMA+ 
Sbjct:   504 PFYDNSNPTGKIDNTKKGWIAVAGMIFFKLMFSMGLGPIPALIGSEIFPSKIRGKAMAIS 563

Query:   425 MSVHWVINFFVGXXXXXXXXXXXXXX-XYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI 483
               ++W  N  V                 +  FG   ++   FV   V ETK   ++E+  
Sbjct:   564 QLLNWAANCIVNSMYLHMVNSKLGQAGTFWFFGGISIITFFFVLILVPETKNVQIEELSK 623

Query:   484 ALL 486
              LL
Sbjct:   624 RLL 626

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 134/441 (30%), Positives = 232/441 (52%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query:   112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
             A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct:   109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query:   172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
               +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct:   169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query:   232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
             P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct:   224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query:   290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
             + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct:   284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query:   349 GRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAG 401
             GR+ LL  S   M +S+ I  AA     ++   + +Y     LSV G++  V+ F+LG G
Sbjct:   344 GRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMG 403

Query:   402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLM 461
             P+P L++ EI P  I+  A ++    +W  ++ +                ++++G  C  
Sbjct:   404 PIPWLIMSEILPVNIKGLAGSIATLANWFFSWLI-TMTANLLLAWSSGGTFTLYGLVCAF 462

Query:   462 AVAFVKRNVVETKGKSLQEIE 482
              V FV   V ETKGK+L+E++
Sbjct:   463 TVVFVTLWVPETKGKTLEELQ 483

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 136/442 (30%), Positives = 236/442 (53%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query:   112 ADGVGRRRAFQLCALPMIIG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             A+ VGR+ +  + A+P IIG  SIS   ++   + +GR + G G+G+      +Y+ E++
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFA-KDTSFLYMGRLLEGFGVGIISYTVPVYIAEIA 168

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  E
Sbjct:   169 PQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPE 223

Query:   231 SPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFR 288
             SP WL K G T + E   + L G  + +   + E+ + +        V+F +L   R++ 
Sbjct:   224 SPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYF 283

Query:   289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDK 347
              + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A  L+DK
Sbjct:   284 PLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDK 343

Query:   348 LGRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGA 400
              GR+ LL  S   M +S+ I   A     ++   +++Y     +SV G++  V++ +LG 
Sbjct:   344 AGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGM 403

Query:   401 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCL 460
             GP+P L++ EI P  I+  A ++   ++W +++ V                ++++   C 
Sbjct:   404 GPIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLV-TMTANMLLAWSSGGTFTLYALVCG 462

Query:   461 MAVAFVKRNVVETKGKSLQEIE 482
               V FV   V ETKGK+L+EI+
Sbjct:   463 FTVVFVSLWVPETKGKTLEEIQ 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 134/458 (29%), Positives = 234/458 (51%)

Query:    35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
             N T+ +   P+ K  F  V+  +A  +  LFGY  GV++  +  IS +  F+ +    G 
Sbjct:     2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58

Query:    93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
             VVS  L GAF+G+  SG +AD +GR+R   + AL  I+G +IS+ T ++  +++GR +VG
Sbjct:    59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118

Query:   153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
               +G+    A LY++E+SPP  RG   +  Q+A  +G+  S ++         W R  F 
Sbjct:   119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177

Query:   213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
               ++PAA+L L M+    SP W++ +G   +A     KL G G H +  L  +    +  
Sbjct:   178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237

Query:   272 DGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----LA 326
              GD       L+ +  R  +FI   L   QQ++GIN + Y++ ++ K  G  +     LA
Sbjct:   238 KGDW----RTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILA 293

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL--YL 384
              + +G   ++ +++++ L+D LGR+ LL     +M VS+   V + S  + G      ++
Sbjct:   294 TMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLL--VLSWSFKVHGHMDYMRWI 351

Query:   385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXX 444
             + G +L+F+  F++  GP+  L+  EIFP R+R    ++    +W  N+ V         
Sbjct:   352 AFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIE 411

Query:   445 XXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                    + I+    ++ + F+  +V ETKG +L++IE
Sbjct:   412 YLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQIE 449

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 109/359 (30%), Positives = 178/359 (49%)

Query:    45 SWKLSFPHVL----VATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLG 99
             +WK   P+VL     A +   LFGY  GV++  L  I  D    + NT  + ++VSM + 
Sbjct:    22 TWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVA 79

Query:   100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
             GA +G+ + GW  D +GRR A  +     ++GA I A   N   +++GR  VG G+G+  
Sbjct:    80 GAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMAS 139

Query:   160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
               A LY++E SP  +RG   +        G   S LI +   ++ G WR    ++ +PA 
Sbjct:   140 MTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPAL 199

Query:   220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK------LDRGDDG 273
             +  + M    ESP WLY+KGR  EA+A   ++     V+  +  L        L+ G   
Sbjct:   200 LQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE 259

Query:   274 DI--VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LA 326
              I  +K  +    R   +  +G  +F  QQ  GIN + Y+S ++ + AG +S      L+
Sbjct:   260 KINMIKLCKAKTVRRGLIAGVGLQVF--QQFVGINTVMYYSPTIVQLAGFASNRTALLLS 317

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA---SSSYIPGSASL 382
              V  G+ N  GS++++  +D++GRK LL  S F + +S+ I       ++++ P  +SL
Sbjct:   318 LVTAGL-NAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAATHAPAISSL 375

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

ZFIN|ZDB-GENE-030829-25 slc2a8 "solute carrier family 2 (facilitated glucose transporter), member 8" [Danio rerio (taxid:7955)]

 Score = 347 (127.2 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 94/323 (29%), Positives = 161/323 (49%)

Query:    49 SFPHVLVATLSSFLFGYHLGVVNE--PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
             +F  VL      F+ GY    + E   ++ + L L     +   G VV++   GA +G  
Sbjct:    40 TFAAVLGPLSFGFVLGYSSPAIPELRRIQDLRLQLSVEEASWF-GSVVTI---GAALGGL 95

Query:   107 LSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
             L GWI + +GR+ +   CA+P I G +     +N     +GR + G   G+   V  LY+
Sbjct:    96 LGGWIVERIGRKLSLMFCAIPFIFGFTTIIAAQNHWMFYVGRVLTGLASGVTSLVVPLYI 155

Query:   167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
             +E++   VRGT G+ +Q+   +G+MG+ + G+ +      WR     S +P  ++ L+M 
Sbjct:   156 SEMAHERVRGTLGSCVQLMVVIGIMGAYVTGLFLD-----WRWLAVASSIPPTLMLLSMC 210

Query:   227 FCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285
             F  E+P +L  +G+  EAE     L G  +  +   A +    + ++       +L    
Sbjct:   211 FMPETPRFLLCQGKRREAEDALRFLRGPDAPAEWECARIEDAYKNEEQSF-SLGDLKDPG 269

Query:   286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVL 344
              ++ + IG  +  LQQ +GINAI +++ ++F+ A   SS +A V V    ++ + +A ++
Sbjct:   270 VYKPLGIGVMMMLLQQFTGINAIMFYAETIFEQAHFKSSDVATVIVAATQVVFTAIAALI 329

Query:   345 MDKLGRKALLQWSFFSMAVSMAI 367
             MDK GRK LL  S   M VS A+
Sbjct:   330 MDKAGRKVLLILSGVVMCVSEAV 352

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P28568	GTR3_CHICK	No assigned EC number	0.3034	0.8527	0.8407	yes	no
P47842	GTR3_CANFA	No assigned EC number	0.3028	0.8752	0.8646	yes	no
Q9JIF3	GTR8_MOUSE	No assigned EC number	0.3006	0.8875	0.9098	yes	no
Q07647	GTR3_RAT	No assigned EC number	0.3010	0.8711	0.8640	yes	no
C0SPB2	YWTG_BACSU	No assigned EC number	0.3146	0.8548	0.9146	yes	no
P58352	GTR3_BOVIN	No assigned EC number	0.3115	0.8629	0.8542	yes	no
Q9FYG3	PLST2_ARATH	No assigned EC number	0.7479	0.9979	0.9898	yes	no
P11169	GTR3_HUMAN	No assigned EC number	0.3036	0.8793	0.8669	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016716001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (488 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-79
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-75
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-66
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-17
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-17
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-15
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	6e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-09
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	5e-09
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-08
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	5e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	1e-04
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	4e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.001
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  253 bits (648), Expect = 4e-79
 Identities = 147/450 (32%), Positives = 241/450 (53%), Gaps = 19/450 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           GS  +G + D  GR+++  +  +  +IGA     A  ++   +++GR +VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
             +Y++E++P  +RG  G+  Q+    G++ + +IG+ + + +    WRI   +  VPA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
           +L + ++F  ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 336
            EL  G+  R  + +G  L   QQL+GINAIFY+S ++F++ GLS S L  + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAI-QVAASSSYIPGSASLYLSVGGMLMFVLT 395
            + +A+ L+D+ GR+ LL      MA+   +  VA         A   +++  +L+F+  
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG-IVAIVFILLFIAF 360

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 455
           FALG GPVP +++ E+FP  +R KAMA+  + +W+ NF +G LF  +   +G   ++ +F
Sbjct: 361 FALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY-VFLVF 419

Query: 456 GTFCLMAVAFVKRNVVETKGKSLQEIEIAL 485
               ++ + FV   V ETKG++L+EI+   
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  243 bits (621), Expect = 8e-75
 Identities = 141/452 (31%), Positives = 237/452 (52%), Gaps = 25/452 (5%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F         +   GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
           Y++E++P  +RG   +  Q+A   G++ +   G            WRI   + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIV 276
            L + F  ESP WL  KGR  EA     +L G S   K  L EL     K          
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269

Query: 277 KFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331
            +  L     R  R +F+G  L   QQ +GINAI Y+S ++F++AG+S+    L ++ VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329

Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI--QVAASSSYIPGSASLYLSVGGM 389
             N   + VA+ L+D+ GR+ LL      MA+ + +   + AS       +S  +++  +
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI 389

Query: 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ 449
           L+F+  FA+G GPVP +++ EIFP  +R K +++ ++ +W+ NF VG LF  +LE +G  
Sbjct: 390 LLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449

Query: 450 LLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 481
            ++  FG   ++ + FV   + ETKG++L+EI
Sbjct: 450 GVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  221 bits (564), Expect = 2e-66
 Identities = 141/469 (30%), Positives = 225/469 (47%), Gaps = 52/469 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
           +GL   ++ +Y+ E++P  +RG   +F Q A    + G L++      I     A W   
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190

Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             WR  F    +PA +  + + F  E+P +L  +G+  +AE    K++G +    +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250

Query: 265 -SKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
              LD G         +LL +G    V+ IG  L   QQ  GIN + Y++  +FK+ G S
Sbjct: 251 KHSLDHG----RKTGGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304

Query: 323 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS 379
           + +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M     A  +  PG 
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG- 363

Query: 380 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF 439
               +++  ML +V  FA+  GPV  +LL EIFP+ IR KA+A+ ++  W+ N+FV   F
Sbjct: 364 ---IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420

Query: 440 ------LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                   L+        Y I+G   ++A  F+ + V ETKGK+L+E+E
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 83/399 (20%), Positives = 150/399 (37%), Gaps = 27/399 (6%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
                    V+E +P   RGT    +     +G      +   +  + G WR  F+V  I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
            P  +L L M F  ES  +L  K    E        +       + + L +         
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS----VFKSAGLSSGLANVFVG 331
             F+ L  G+  R+  +   L+ +  +       YF ++    +    G S  LA     
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 332 IAN---LLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
           + N   ++GS++   L D+LG +         +  ++   +  S+ + P    L  ++ G
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTA---LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349

Query: 389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427
                  F  G       L+   +P+ IRA  +   + +
Sbjct: 350 F------FVNGGQSGLYALMALFYPTAIRATGVGWAIGI 382

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 83.1 bits (206), Expect = 6e-17
 Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 37/392 (9%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  +GS + G+++D  GR++   L  L   +   ++A + N    L+ R +VG G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
             A +  TE  P   R   G  IQ+   LGL+   L+   + +    WR       +P  
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIV 276
           +  L   F  ESP WL  +GR  EA    +++  + G  + + +  LS   D        
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQY 314

Query: 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANL 335
            F +L    + R   +      L  L    A  Y+   +     G +  L     G+  L
Sbjct: 315 SFLDLFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL 369

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAV-SMAIQVAASSSYIPGSASLYLSVGGMLM-FV 393
              ++ ++L+D+LGR+  +  S     V  + +       Y   +A   L   G+   F 
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ 429

Query: 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVC--MSVHWVINFFVGLLFLRLLEQLG---P 448
           + +         L   E++P+ +R   + VC  M+        VG +    L  LG    
Sbjct: 430 MVY---------LYTAELYPTVVRNLGVGVCSTMAR-------VGSIISPFLVYLGEKWL 473

Query: 449 QLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
            L   +FG   L+A       + ETKG  L E
Sbjct: 474 FLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E  PP
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
             RG           LG +   L+G  + E  G WR  F +  +   +L L ++F 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 62/343 (18%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
           +G+ + G   D +GR++   +  L M IG  +     +   IG+      LL R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
           +G     AALY+ E +PP  RG YG+F Q+   +GL+ + L  + +  + G      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267
           RI F VS V   I         E+P +   + +  +      + L               
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT-------------- 215

Query: 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN 327
                            +H +   +G  L      +      Y  + + ++ GLS   AN
Sbjct: 216 -----------------KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---AN 255

Query: 328 VFVGIANLLGSVVAMV-------LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380
             + +  +L  ++  +       L D++GR+ +L        V  A+        +  S 
Sbjct: 256 SALLV-LMLSLILFFITIPLSGALSDRIGRRPVLII----FTVLAALLAVPLLMALLDSG 310

Query: 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV 423
           S  L    +L   L   +  GP+ S L PE+FP+ +R    ++
Sbjct: 311 SFTLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASL 352

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 72/374 (19%), Positives = 139/374 (37%), Gaps = 44/374 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +  PP
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232
             RG     +     LG     L+G  +  + G WR  F +  + A +  +         
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL----- 170

Query: 233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292
             L +    ++     E+                        +V   +LL       + +
Sbjct: 171 -LLPRPPPESKRPKPAEEAPAP--------------------LVPAWKLLLRDPVLWLLL 209

Query: 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV---LMDKLG 349
              LF         A+  +     +  GLS+ LA + +G+A LLG++  ++   L D+LG
Sbjct: 210 ALLLFGF----AFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409
           R+  L  +   + +      A   + +  + S    +  +L+      L    + +L+  
Sbjct: 266 RRRRLLLALLLLIL-----AALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS- 319

Query: 410 EIFPSRIRAKAMAV 423
           ++ P   R  A  +
Sbjct: 320 DLAPKEERGTASGL 333

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS----GLANVFVGIANLL 336
            L       + +   L       G   +  +     +     S    GL     G+  +L
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226

Query: 337 GSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 395
           G+++  +L D+LGR+ LL        A+ + +   A S  +   A L L  G    F   
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 455
             L           E+ P   R  A  +  +   +      LL   LL+  G   ++ I 
Sbjct: 287 LTL---------ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337

Query: 456 GTFCLMAVAFV 466
               L+A   +
Sbjct: 338 AALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 68/321 (21%), Positives = 112/321 (34%), Gaps = 24/321 (7%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
            G+ + G   D  GRR       +    G          I M + R V+G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
           A YV E  P  +R      +     +G + +  +   V  + G  WR  F++SI+P    
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH-VKSSLAELSKLDRGDDGDIVKFEE 280
                   E+  W  K    A      + L GG H + + +  L+       G     + 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG-----KR 236

Query: 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN---VFVGIANLLG 337
                +  V+ + + L++      I  +    + +    GLS        VF  I  ++G
Sbjct: 237 WPTFVYLVVLVLFANLYS----HPIQDL--LPTYLKADLGLSPHTVANIVVFSNIGAIVG 290

Query: 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA 397
             V   L D LGR+        S+     + +     +  G+    L +G     +L   
Sbjct: 291 GCVFGFLGDWLGRRKAY---VCSLLAGQLLIIPV---FAIGANVAVLGLGLFFQQMLVQ- 343

Query: 398 LGAGPVPSLLLPEIFPSRIRA 418
            G   +    L E FP+  RA
Sbjct: 344 -GIWGILPKHLGEYFPTDQRA 363

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 55/328 (16%)

Query: 98  LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
           L GA +G    G +AD +GR+R   +      + +  +A   +   +L+ R +  TG+GL
Sbjct: 64  LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117

Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
           G   P + AL  +E   P +RGT  + +      G   + +IG+     A W R  F+V 
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175

Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
            + P  ++ L M +  ES  +    G   +       L G     ++L            
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL----------- 224

Query: 274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFV 330
                          + +   TL  L  L  +N +     S+    GLS   +GL  +  
Sbjct: 225 -------------LWISYFF-TLIVLYFL--LNWL----PSLLVGQGLSRSQAGLVQIAF 264

Query: 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390
            I   LGS++   LMD+L  + ++   +  +  S+A   AA     P  A + L+     
Sbjct: 265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAGMLLAGFAAG 319

Query: 391 MFVLTFALGAGPVPSLLLPEIFPSRIRA 418
           +FV    +G   V   L P  +P+++R 
Sbjct: 320 LFV----VGGQSVLYALAPLFYPTQVRG 343

Length = 406

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 100/446 (22%), Positives = 166/446 (37%), Gaps = 78/446 (17%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMII-----GASISATTRNLIGMLL-GRFVVGT 153
           G   G    GW+AD +GR+R + +  + MII     G S  ++ ++++  L   RF +G 
Sbjct: 68  GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127

Query: 154 GMGLGPTVAALYVTEVSPPFVRGTY--------------GAFIQIATCLGLMGSL----- 194
           G+G    ++A+  +E +    RG                GA + +    G   SL     
Sbjct: 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187

Query: 195 ---LIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAE-AEAEFEK 250
                G  V  +   WRI      VPA +     +   E+P +     +  E A ++   
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247

Query: 251 LLGGS------HVKSSLAELSKLDRGDDGDIVKFEELLYGRH----------FRVVFIGS 294
           +L          V+ +   +             F +  +G+H            + F G 
Sbjct: 248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLL-GSVVAMVLMDKLGRKAL 353
            L     LS I      +++        + + N+ + +A  + G  V + L+D +GRK +
Sbjct: 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367

Query: 354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML-MFVLT-FALGAGP------VPS 405
               FF + V   +          G A  +LS  G L ++VL  F    GP      VP 
Sbjct: 368 QLMGFFILTVLFFVL---------GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPG 418

Query: 406 LLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYS----------IF 455
               E+FP+R R+ A  +  +            FL L +   P   Y           IF
Sbjct: 419 ----EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474

Query: 456 GTFCLMAVAFVKRNVVETKGKSLQEI 481
             F  + + F    + ETKGKSL+E+
Sbjct: 475 ALFMFLGILFTLL-IPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 80/349 (22%), Positives = 125/349 (35%), Gaps = 45/349 (12%)

Query: 77  ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
           I  DLG     G  LA    +    GGA  G      +AD  GR+       +   +G  
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98

Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
           +S     +I + L RF+VG GM      A+ Y  E  P  ++    AF+     +G + +
Sbjct: 99  LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158

Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG 253
                   E  G WR  F+V ++P  ++        ES  W          EA+      
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWE---------EAKLSGKGK 208

Query: 254 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN-AIFYFS 312
            S    S+  LS             + L     F +         L  + G N  IF   
Sbjct: 209 HSQSAWSVFSLS------------MKGLFNRAQFPLTLC--VFIVLFSIFGANWPIFGLL 254

Query: 313 SSVFKSAGLSSGLANVFVGIA---NLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369
            +     G  +G+ +  +  A    +LG++V  +  D++G K       FS+ + M+   
Sbjct: 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-----FSIGLLMSFLF 309

Query: 370 AASSSYIPGSASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFPSRIR 417
                 IP    L L   G  +F L    +G G +    L + FP  +R
Sbjct: 310 IFPLFRIPQDNYLLL---GACLFGLMATNVGVGGLVPKFLYDYFPLEVR 355

Length = 426

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  I S LSG + D  GR+    +     ++  ++ A + N+  +++ RF+ G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
              A  + ++ PP  RG     +     LG +    +G  + +  G WR  F    +  A
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127

Query: 220 ILCLAMVFC 228
           +    ++  
Sbjct: 128 LAAFILLAF 136

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 46/314 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150
           G +++    G  +G+ L   +   + RRR         I+   +SA   +   +LL R +
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210
            G   G+  ++AA     + PP  RG   A +     L  +  + +G  + ++ G WR  
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRAT 169

Query: 211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG 270
           F   I   A+L L +++    P                  L     +   LA        
Sbjct: 170 FLA-IAVLALLALLLLW-KLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATF------ 221

Query: 271 DDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF 329
                     L    HF +  +I      L+ ++G           F  + +S  L  + 
Sbjct: 222 ----------LFMTGHFALYTYIRPF---LESVAG-----------FSVSAVS--LVLLA 255

Query: 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389
            GIA  +G+++   L D+  R+AL+  +   +A+++       +S     A         
Sbjct: 256 FGIAGFIGNLLGGRLADRGPRRALIA-ALLLLALALLALTFTGASPALALA--------- 305

Query: 390 LMFVLTFALGAGPV 403
           L+F+  FA      
Sbjct: 306 LLFLWGFAFSPALQ 319

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 2/179 (1%)

Query: 50  FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
              +L+  L+ FL  +    +   L     ++       A GL++S+   G  +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
            ++D +GRRR   L  L    +G  + A   +L  +L+   ++G G+G          +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
           ++PP  RGT          LG     L+   + +  G+  +   ++ +      L ++ 
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
             L+   + G G+GL   +    + +V                   Y    ++   LG  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373

Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
              L+            +  A    I    +++PA +  LA++ 
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 75/410 (18%), Positives = 145/410 (35%), Gaps = 45/410 (10%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
           F+       L+     GG FI S  +G +   +G +    L  L   +GA++   +A+++
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199
           +    L+  F++ +G+GL  T A  YVT +  P          Q    LG +   L+G  
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG-- 160

Query: 200 VKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS 259
                    +      + AA +       A S  + Y              L G   + +
Sbjct: 161 -----SSLILSGVALTMSAAQILAIKGADASSVQFPY------------LILAGLLVLLA 203

Query: 260 SLAELSKL--------DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF 311
            L  LSKL          G  G       L   +H R+  +   L+   +++  + +  +
Sbjct: 204 VLILLSKLPDLQVAAPSLGASGSAGLS-SLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSY 262

Query: 312 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVA 370
              +       +     F  +  ++G  +   LM ++   K L  ++  ++ + +A  VA
Sbjct: 263 LEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA--VA 320

Query: 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV 430
                +   A   + +   +MF   F+L           +         +  + M++  V
Sbjct: 321 LIGGVVALYALFLIGLFNSIMFPTIFSLAL---------KNLGEHTSVGSGLLVMAI--V 369

Query: 431 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
               +  L   + +  G QL + I    C + V F      ++KG+   E
Sbjct: 370 GGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLSAE 419

Length = 422

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
           W L F    V  L+    G  + VV   L S   DL   +      GL+V +   G  +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218

Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
           +   G +AD +GR++   +C       A  S+  +     L  R + G G+G    +   
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
           Y  E      RG + +++ +   +G + +  +   +    GW            WR+   
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338

Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
           V   P      A+ F  ESP +  + G+  EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346
             ++F+G  L  L     ++      +     +   +GL      +   LGS++A  L D
Sbjct: 1   LLLLFLGFFLSGLD-RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59

Query: 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG----- 401
           + GR+ +L       A+   +   ASS +              L+ V  F LG G     
Sbjct: 60  RFGRRRVLLLGLLLFALGSLLLAFASSLW--------------LLLVGRFLLGLGGGALY 105

Query: 402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM 461
           P  + L+ E FP + R +A+ +  +   +      LL   L E LG + L+ I     L+
Sbjct: 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165

Query: 462 AVAFV 466
               +
Sbjct: 166 LALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
           I   L+GW+A   G RR F +      +G+ +     NL  M++ R + G G G    ++
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
              +  + PP  RG   A   +   +       +G  + E    WR  F +++    I+ 
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170

Query: 223 LAMVF 227
           +   F
Sbjct: 171 VVAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 19/204 (9%)

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 349
           +F+ + L  L +     A+  + +     +    GL      +   L   +A  L D+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG-----PVP 404
           R+ +L       A+ + + + ASS +              L+ VL    G G     P  
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLW--------------LLLVLRVLQGLGGGALFPAA 106

Query: 405 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464
           + L+ + FP   R +A+ +  +   +      LL   L    G +  + I     L+A  
Sbjct: 107 AALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAV 166

Query: 465 FVKRNVVETKGKSLQEIEIALLPQ 488
                +     +S +       P 
Sbjct: 167 LAALLLPRPPPESKRPKPAEEAPA 190

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
PRK03699	394	putative transporter; Provisional	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
PRK11043	401	putative transporter; Provisional	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK10133	438	L-fucose transporter; Provisional	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
KOG2532	466	consensus Permease of the major facilitator superf	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK15011	393	sugar efflux transporter B; Provisional	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.91
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.9
TIGR00901	356	2A0125 AmpG-related permease.	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
TIGR00805	633	oat sodium-independent organic anion transporter.	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
KOG2615	451	consensus Permease of the major facilitator superf	99.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
PTZ00207	591	hypothetical protein; Provisional	99.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.78
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.76
PRK09669	444	putative symporter YagG; Provisional	99.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.7
PRK10429	473	melibiose:sodium symporter; Provisional	99.69
PRK09848	448	glucuronide transporter; Provisional	99.69
PF13347	428	MFS_2: MFS/sugar transport protein	99.68
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.66
PRK11462	460	putative transporter; Provisional	99.65
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
KOG2563	480	consensus Permease of the major facilitator superf	99.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.58
COG2211	467	MelB Na+/melibiose symporter and related transport	99.56
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.5
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.46
KOG0569	485	consensus Permease of the major facilitator superf	99.39
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.39
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.37
PRK15011	393	sugar efflux transporter B; Provisional	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.27
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.27
PRK05122	399	major facilitator superfamily transporter; Provisi	99.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.26
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.25
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.24
PRK12382	392	putative transporter; Provisional	99.22
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.22
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PRK09528	420	lacY galactoside permease; Reviewed	99.17
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.16
PRK10054	395	putative transporter; Provisional	99.14
PRK09874	408	drug efflux system protein MdtG; Provisional	99.13
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.11
TIGR00898	505	2A0119 cation transport protein.	99.1
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.1
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.08
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.08
TIGR00893	399	2A0114 d-galactonate transporter.	99.06
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.06
PRK11663	434	regulatory protein UhpC; Provisional	99.05
PRK03893	496	putative sialic acid transporter; Provisional	99.05
KOG3626	735	consensus Organic anion transporter [Secondary met	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.05
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.04
PLN00028	476	nitrate transmembrane transporter; Provisional	99.04
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.04
PRK03633	381	putative MFS family transporter protein; Provision	99.04
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.03
PRK09705	393	cynX putative cyanate transporter; Provisional	99.03
TIGR00895	398	2A0115 benzoate transport.	99.03
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.02
PRK03699	394	putative transporter; Provisional	99.01
PRK10489	417	enterobactin exporter EntS; Provisional	99.01
PRK03545	390	putative arabinose transporter; Provisional	99.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
TIGR00900	365	2A0121 H+ Antiporter protein.	98.97
TIGR00891	405	2A0112 putative sialic acid transporter.	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.95
PRK09952	438	shikimate transporter; Provisional	98.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.94
PRK12307	426	putative sialic acid transporter; Provisional	98.93
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.89
PRK10091	382	MFS transport protein AraJ; Provisional	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.88
PRK10504	471	putative transporter; Provisional	98.88
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.86
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.85
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.84
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.81
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.8
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.79
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.78
PRK15075	434	citrate-proton symporter; Provisional	98.76
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.76
KOG2615	451	consensus Permease of the major facilitator superf	98.74
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.72
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.72
PRK11043	401	putative transporter; Provisional	98.72
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.71
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.7
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.7
KOG0254	513	consensus Predicted transporter (major facilitator	98.68
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.68
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.67
COG0477	338	ProP Permeases of the major facilitator superfamil	98.66
PTZ00207	591	hypothetical protein; Provisional	98.66
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.63
PRK11010	491	ampG muropeptide transporter; Validated	98.62
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.6
PRK09848	448	glucuronide transporter; Provisional	98.6
TIGR00901	356	2A0125 AmpG-related permease.	98.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.55
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.5
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.49
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.48
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.48
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.44
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.43
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.42
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.42
PRK11902	402	ampG muropeptide transporter; Reviewed	98.41
PF13347	428	MFS_2: MFS/sugar transport protein	98.39
TIGR00805	633	oat sodium-independent organic anion transporter.	98.38
PRK10429	473	melibiose:sodium symporter; Provisional	98.36
PRK09669	444	putative symporter YagG; Provisional	98.35
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.29
PRK10133	438	L-fucose transporter; Provisional	98.27
COG2211	467	MelB Na+/melibiose symporter and related transport	98.24
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.17
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.13
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.1
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.0
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.0
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.97
KOG2532	466	consensus Permease of the major facilitator superf	97.96
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.93
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.87
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.84
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.83
PRK11462	460	putative transporter; Provisional	97.76
KOG3810	433	consensus Micronutrient transporters (folate trans	97.67
KOG3762	618	consensus Predicted transporter [General function	97.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.45
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.43
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.31
KOG0637	498	consensus Sucrose transporter and related proteins	97.31
KOG2533	495	consensus Permease of the major facilitator superf	97.31
PF12832	77	MFS_1_like: MFS_1 like family	97.27
KOG2563	480	consensus Permease of the major facilitator superf	97.14
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.0
KOG3762	618	consensus Predicted transporter [General function	96.94
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.71
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.69
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.14
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.06
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.99
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.83
PF12832	77	MFS_1_like: MFS_1 like family	95.82
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.71
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.47
PRK03612	521	spermidine synthase; Provisional	95.33
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.92
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.34
COG0477	338	ProP Permeases of the major facilitator superfamil	93.9
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.66
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.34
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.27
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.77
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	90.52
COG3202	509	ATP/ADP translocase [Energy production and convers	90.33
PRK03612	521	spermidine synthase; Provisional	89.15
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	88.38
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	87.79
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	86.96
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	85.91
KOG3880	409	consensus Predicted small molecule transporter inv	80.14

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.8e-51  Score=396.55  Aligned_cols=436  Identities=34%  Similarity=0.578  Sum_probs=363.8

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhh--------hhhcCC--CCc--hhHHHHHHHHHHHHHHHHHHhhhhhhhcchh
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESI--------SLDLGF--NGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGR  117 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i--------~~~~~~--~~~--~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR  117 (489)
                      ....+.++++++-.||+.+.+|+..+.+        .+.++.  +++  +..++.+++.+.+|.++|+++.++++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3345566777788999999999986444        344442  332  2346789999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHHh---cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHH
Q 011275          118 RRAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (489)
Q Consensus       118 r~~~~~~~~~~~i~~~l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~  194 (489)
                      |..+..+.++..+++++..+   .++++.++++|++.|+..|......+.|+.|..|++.||....+.+++..+|.+++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            99999999998888777654   578999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhccc-ccCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHh-cCCHHHHHHHHHHHhCCCchhHHHHHHHhh---cc
Q 011275          195 LIGIPV-KEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSKL---DR  269 (489)
Q Consensus       195 ~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~  269 (489)
                      +++..- ......|++.+....+++++.++...++||||||+.. ++|.+||++.++++++.++.++..++..+.   ++
T Consensus       170 ~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~  249 (485)
T KOG0569|consen  170 VLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE  249 (485)
T ss_pred             HHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence            887652 2222337899998899999999999999999999997 899999999999999987655555443322   22


Q ss_pred             CCCCcchhHHHhhhccchhH-HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHH
Q 011275          270 GDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLM  345 (489)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~  345 (489)
                      .++.+..++.+++++++.|. ..+...+...+++.+.+.+.+|...+++..|++..   .++...++.+++.++++.+++
T Consensus       250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~li  329 (485)
T KOG0569|consen  250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLI  329 (485)
T ss_pred             cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22235677889999877665 45566778889999999999999999999998754   577888999999999999999


Q ss_pred             hhcCCchhHHHhhHHHHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH
Q 011275          346 DKLGRKALLQWSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC  424 (489)
Q Consensus       346 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  424 (489)
                      ||+|||++++.+..++.+....+........ ...+..+..+...+.|.+.|++|.+|+++.+.+|++|++.|++++++.
T Consensus       330 d~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~  409 (485)
T KOG0569|consen  330 DRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVA  409 (485)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHH
Confidence            9999999999988877777655432221111 114455677788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011275          425 MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL  486 (489)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~~  486 (489)
                      ..++|+..++.++.++++.+.+|. ..|..+.+.+++..+++++++||||||+.+||.++++
T Consensus       410 ~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  410 TAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            999999999999999999999997 8888999999999999999999999999999988765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.2e-45  Score=372.70  Aligned_cols=438  Identities=33%  Similarity=0.594  Sum_probs=356.2

Q ss_pred             HHHHHHHHHHHhhhhcc--ceeeccchhhhhhhcCCCC---ch--hHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHH
Q 011275           50 FPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ  122 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~  122 (489)
                      ........++.+.++++  .+...+....+.++...+.   ++  .+.+|+.+.+.+|..+|+++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            44556778888899987  5667777766666433221   11  24489999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc
Q 011275          123 LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (489)
Q Consensus       123 ~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~  202 (489)
                      .+.+.+.+|++++++++|+.+++++|+++|+|.|+...+.+.|++|..|++.||...+..+....+|.+.+.+++.....
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877766543


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhC--CCchhHHHHHHHhh--ccCC-CCcchh
Q 011275          203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSKL--DRGD-DGDIVK  277 (489)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~  277 (489)
                      ...+||.++++..+++++..+..++.||||+|+..+++.+++++.++++.+  +.+.....++++..  .+.. ......
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS  283 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence            212489999999999999888888899999999999999999999999988  33444433333311  0110 111113


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011275          278 FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKALLQ  355 (489)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  355 (489)
                      +.+++..+..+....+..+..++++++.+...+|.+.+++..+.+.  ....+..++.++++.+++..+.||+|||++++
T Consensus       284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLL  363 (513)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            5556665566677778889999999999999999999999988775  45667788899999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHhhccC----CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011275          356 WSFFSMAVSMAIQVAASSSYI----PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                      .+...+.++++++........    ......++.+...+++...++.+.+|++|.+.+|++|.+.|+++.+++..++++.
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            999988888877654432211    1223456667778888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHhhcC
Q 011275          432 NFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA-FVKRNVVETKGKSLQEIEIALLP  487 (489)
Q Consensus       432 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~e~~~~~~~  487 (489)
                      +++....++.+....+....|..++.++.+... +.+.++|||||++++|+++.++.
T Consensus       444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            999988777776665545667777777777766 88899999999999999988654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.3e-43  Score=361.76  Aligned_cols=427  Identities=19%  Similarity=0.270  Sum_probs=297.8

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhc-C--CCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      .....+++++.+.++||.+.++...|.+..++ +  ...++.+.+++.+.+.+|+.+|+++.|+++||+|||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~   94 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELI   94 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            44566778888999999999998888876643 1  12233455789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcch------HHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          127 PMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       127 ~~~i~~~l~~~~~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                      ++.+++++++++.+      +..++++|+++|++.|...+....+++|++|+++||+.+++.+....+|.++++.++..+
T Consensus        95 ~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887        95 IMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988876      788999999999999999999999999999999999999999999999988777665432


Q ss_pred             cc---------------------C-CchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHH-HHHHHHHHHhCCCch
Q 011275          201 KE---------------------I-AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLLGGSHV  257 (489)
Q Consensus       201 ~~---------------------~-~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~-~~~~~l~~~~~~~~~  257 (489)
                      ..                     . ...||++|.+..++.++..+..+++||||+|+..++|.+ ++++.+++..+.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~  254 (502)
T TIGR00887       175 LAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE  254 (502)
T ss_pred             HHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc
Confidence            10                     0 112899999988888888888889999999998887764 455556655432111


Q ss_pred             hHHHHHHHhhccCCCCcchhHHHhhhcc---chhHHHHH-HHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---h-----
Q 011275          258 KSSLAELSKLDRGDDGDIVKFEELLYGR---HFRVVFIG-STLFALQQLSGINAIFYFSSSVFKSAGLSSG---L-----  325 (489)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----  325 (489)
                      + ..++.++.+++++....+++++++++   +.++..+. ...+....+ ..+....+.|.+++..|++..   .     
T Consensus       255 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~  332 (502)
T TIGR00887       255 A-EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYSPPAATNNAYEE  332 (502)
T ss_pred             c-CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCCCCccchhHHHH
Confidence            1 01111111111111112466666532   11122221 111221111 122233345666666665422   0     


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc
Q 011275          326 -------ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  398 (489)
Q Consensus       326 -------~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (489)
                             ......++.+++.+++++++||+|||+++..+..+.+++..++....... .  .....  ...+.+...+..
T Consensus       333 ~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~--~~~~~--~~~~~~~~~~~~  407 (502)
T TIGR00887       333 LYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-S--THGFL--AIYVLAQFFANF  407 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-c--hhHHH--HHHHHHHHHHhc
Confidence                   12333456777889999999999999998777766666554443322111 1  11111  111222233456


Q ss_pred             CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhHHHHHHHHHHHHHHHHh
Q 011275          399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       399 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      +.+++.+.+.+|++|++.|+++.|+.+.++++++++++.+++.+.+.          .+....|.+++++++++.++. +
T Consensus       408 ~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~  486 (502)
T TIGR00887       408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-L  486 (502)
T ss_pred             CCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-e
Confidence            67788888999999999999999999999999999999998888763          233456777887777765543 6


Q ss_pred             hcccCCCCCHHHHHHh
Q 011275          469 NVVETKGKSLQEIEIA  484 (489)
Q Consensus       469 ~~pet~~~~~~e~~~~  484 (489)
                      ++|||||+++||+|++
T Consensus       487 ~lpEt~~~~leei~~~  502 (502)
T TIGR00887       487 LIPETKGKSLEELSGE  502 (502)
T ss_pred             EeccCCCCCHHhhhCC
Confidence            7899999999999864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.6e-42  Score=351.24  Aligned_cols=429  Identities=31%  Similarity=0.527  Sum_probs=313.7

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ...+++++++.+.++|+.+.+++..|.+.+++.      .+.+..+.+++.+.+.+|..++++++|+++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            445677788899999999999999999988872      12334567899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhc------------chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHH
Q 011275          124 CALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~------------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~  191 (489)
                      +.++++++.++++++            .++..++++|+++|++.|+..+....+++|++|+++||+++++.+.+..+|..
T Consensus        91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            999999998888763            23567889999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011275          192 GSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       192 ~~~~~~~~~~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  263 (489)
                      ++++++..+.        +..+ ||+.|++..++.++..+..+++||+|+|+..+++.+++++..++..+.+..+...++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            8777654321        2234 899999887777776666778999999988888888777666665544332222222


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHH
Q 011275          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVV  340 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~  340 (489)
                      ..+..+.+..   +....+. ..............+++..+.+...++.+.+++..+.+..   ......++.++++.++
T Consensus       250 ~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~  325 (479)
T PRK10077        250 IKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL  325 (479)
T ss_pred             HHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            2111100000   0001110 0111112222223334444555666777877777766533   4455677888999999


Q ss_pred             HHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhH
Q 011275          341 AMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA  420 (489)
Q Consensus       341 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  420 (489)
                      +++++||+|||+++..+.....++.+.+.......  .  .....+..++.+...+..+.+|+.+.+++|++|++.|+++
T Consensus       326 ~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  401 (479)
T PRK10077        326 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA  401 (479)
T ss_pred             HHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--c--ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHH
Confidence            99999999999999888877777665544322111  1  1112222344455556556678888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhcC
Q 011275          421 MAVCMSVHWVINFFVGLLFLRLL------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP  487 (489)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~~~  487 (489)
                      +|+.+.++++++.+++.+++.+.      +..++...|.++++++++++++.+...||||+++++|+|++++.
T Consensus       402 ~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            99999999999999887776543      35667777888888888887777778999999999999988764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=5e-42  Score=355.21  Aligned_cols=416  Identities=19%  Similarity=0.218  Sum_probs=300.8

Q ss_pred             HHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHH
Q 011275           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~  128 (489)
                      .+..+++++++.+.++++...++..+|.+.++++++.+  +.+++.+.+.+|.++|++++|+++||+|||++++++.+++
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~--~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDS--GKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34455667777888899998899999999999988644  5688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC----
Q 011275          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA----  204 (489)
Q Consensus       129 ~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~----  204 (489)
                      ++++++++++++++.++++|++.|++.|+..++...+++|++|+++||+..+++..+..+|.++++.++..+....    
T Consensus       243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~  322 (742)
T TIGR01299       243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSF  322 (742)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999887776543322111    


Q ss_pred             --------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchh-----HH--HHHHHhhcc
Q 011275          205 --------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK-----SS--LAELSKLDR  269 (489)
Q Consensus       205 --------~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~--~~~~~~~~~  269 (489)
                              ..||+++++.+++.++.++..+++||||+|+..++|.+++.+.++++.+.+...     ..  ..+++..+.
T Consensus       323 ~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~  402 (742)
T TIGR01299       323 QMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQ  402 (742)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhh
Confidence                    128999999888888888888889999999999999999999999886543210     00  011111000


Q ss_pred             -------CCCCc-----------------chhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc------
Q 011275          270 -------GDDGD-----------------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA------  319 (489)
Q Consensus       270 -------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  319 (489)
                             ++...                 ...+.+++.++..+..+..+.++....+ +++.+..|.|.+++..      
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~  481 (742)
T TIGR01299       403 EDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYA  481 (742)
T ss_pred             hhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence                   00000                 0124556665555555554444433333 4455555656543220      


Q ss_pred             ------------------------------------CC------------------------------------------
Q 011275          320 ------------------------------------GL------------------------------------------  321 (489)
Q Consensus       320 ------------------------------------~~------------------------------------------  321 (489)
                                                          ++                                          
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  561 (742)
T TIGR01299       482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF  561 (742)
T ss_pred             hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence                                                00                                          


Q ss_pred             ----------------------------------CcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          322 ----------------------------------SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       322 ----------------------------------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                                                        ......+...++.++|.+++++++||+|||+++..+.++.++++++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll  641 (742)
T TIGR01299       562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFF  641 (742)
T ss_pred             hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence                                              0012244556888999999999999999999988877777766655


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ......     .. . + +...+++.. +..+..+..+.+++|++|++.|++++|++++.++++++++|.+.+.+.+. +
T Consensus       642 ~~~~~s-----~~-~-l-l~~~~l~g~-~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~  711 (742)
T TIGR01299       642 LSFGNS-----ES-A-M-IALLCLFGG-LSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T  711 (742)
T ss_pred             HHHHcc-----HH-H-H-HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence            443211     11 1 1 111112221 12233456677899999999999999999999999999999888776653 3


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          448 PQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      ...++.+++++.+++.++.+ .+|||+++.+
T Consensus       712 ~~~pf~i~a~~lll~~ll~~-~LPET~~~~l  741 (742)
T TIGR01299       712 KAAPILFASAALACGGLLAL-KLPDTRGQVL  741 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence            44566666666666555443 5799999864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.6e-48  Score=392.24  Aligned_cols=430  Identities=33%  Similarity=0.575  Sum_probs=326.6

Q ss_pred             HHHHHhhhhccceeeccchhhhhh--hcCCCC-------chhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHH
Q 011275           56 ATLSSFLFGYHLGVVNEPLESISL--DLGFNG-------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        56 ~~l~~~~~~~~~~~~~~~~~~i~~--~~~~~~-------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      +.++.+.++||...++...+....  +...+.       ++.+.++..+...+|..+|+++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            455668899998877666554441  222221       12346789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc---hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011275          127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (489)
Q Consensus       127 ~~~i~~~l~~~~~---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  203 (489)
                      +..+++++.++++   |++.+.++|+++|++.|+..+....|+.|..|+++||+..++.+.+..+|.+++...+......
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999988888876655332


Q ss_pred             Cc--hhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011275          204 AG--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (489)
Q Consensus       204 ~~--~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      .+  .||+.+++..++.++..+...++||||+|+..++|.+|+++.+++.++.+..+++.++..+..+++...+..+.++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL  244 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence            22  3899999988888887778889999999999999999999998886655433333322222222221112445666


Q ss_pred             hhccc-hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhH
Q 011275          282 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      ++++. .+.......+...+.+.+.+...+|.+..++..+.+.. .......+..+++.+++.++.||+|||+++..+..
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~  324 (451)
T PF00083_consen  245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL  324 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66544 34444444455555566666667777777777766655 45566677788888888999999999998888777


Q ss_pred             HHHHHHHHHHHHhhccCCCc-hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011275          360 SMAVSMAIQVAASSSYIPGS-ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                      .+.++...+........... ......+...+.+...+..+.+++.+.+.+|++|++.|+++.+++..++++++++.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  325 LMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             cccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66666554430000011110 11122223344455667778899999999999999999999999999999999999988


Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhh
Q 011275          439 FLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL  485 (489)
Q Consensus       439 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~  485 (489)
                      .+.+.+..+....+.++++++++..++.+.++|||||++++|+|++|
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            88777777756777888888888888889999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.5e-38  Score=321.72  Aligned_cols=430  Identities=32%  Similarity=0.611  Sum_probs=309.1

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCC------CchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ....+.+.++.++.+++...++...+.+..+++++      .++.+.+++.+.+.+++.++++++|+++||+|||+++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            34455666677888999999999999999888877      456678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhc---chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhh---
Q 011275          124 CALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG---  197 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~---  197 (489)
                      +.+++.++.++++..   .+++.++++|+++|++.|...+....+++|++|+++|++++++++.+..+|..++++++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998554   34558999999999999999999999999999999999999999999999999999988   


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH-H---HHHh-hccCCC
Q 011275          198 IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL-A---ELSK-LDRGDD  272 (489)
Q Consensus       198 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~~~~-~~~~~~  272 (489)
                      .......+ ||+.|++..+..++..+..+++||+|+++..+++.++.++..++....+...... .   .... .+.+..
T Consensus       187 ~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       187 VSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            54444444 7999998777666666677789999998777766666555444433221111110 0   0000 000000


Q ss_pred             CcchhHHHhhhcc--chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhh
Q 011275          273 GDIVKFEELLYGR--HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       273 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                      .....+.+.++..  ..+..+....+..+......+...++.+...+..+.+.   +.......++.+++.+++++++||
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  345 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR  345 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011122333221  12233333333333333333444566666666666655   455666778889999999999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH
Q 011275          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGS--ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM  425 (489)
Q Consensus       348 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  425 (489)
                      +|||+.+..+..+..++...............  ......+...+++...+..+..+....+..|.+|++.|++++|+.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  425 (481)
T TIGR00879       346 FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAV  425 (481)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHH
Confidence            99999888776666655544432111111110  0012222333444555666677888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011275          426 SVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e  480 (489)
                      ...++++++++.+.+.+.+..++...|.+++++++++.+......||+|+++++|
T Consensus       426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            9999999999999888888888888888888888888887778899999998765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2e-37  Score=317.30  Aligned_cols=390  Identities=23%  Similarity=0.312  Sum_probs=281.5

Q ss_pred             cchhhhhhhcCCCC-chhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHH
Q 011275           72 EPLESISLDLGFNG-NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (489)
Q Consensus        72 ~~~~~i~~~~~~~~-~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l  150 (489)
                      ...|.+.+|++++. ++.+.++..+.+.+|+.+|+++.|+++||+|||+++..+.++.+++++++++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            45678899999862 24556899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccC
Q 011275          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pE  230 (489)
                      .|++.+...+....++.|++|+++|++..+++..+..+|.+++++++..+.+    ||+.|++..++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999888888765532    899999887887777777788999


Q ss_pred             ChHHHHhcCCHHHHHHHHHHHhCCCchh--HHHHHHH-hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011275          231 SPHWLYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA  307 (489)
Q Consensus       231 sp~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (489)
                      ||+|+..+++.+++++.+++..+.+...  ....+.. +.+..++.++..+.++++++.++...+......+..     .
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~  340 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT-----A  340 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH-----H
Confidence            9999999999998888777654332111  1110000 001111112245677887777666554333222211     1


Q ss_pred             HHHhH-HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          308 IFYFS-SSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       308 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ..++. ....+..+.+........++..+++.++.+++.||+|||+.+..+.+..+++.++......     .... ..+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~-~~~  414 (505)
T TIGR00898       341 FSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYF-LRT  414 (505)
T ss_pred             HHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchH-HHH
Confidence            11221 1222233344455666777888999999999999999999988877766666554433211     1111 111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...++... ...+..+..+.+.+|++|++.|++++|+.+.++++++.++|.+..  .+..+....+.+++++.+++.+..
T Consensus       415 ~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       415 ALAVLGKF-GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence            11111111 111223455678999999999999999999999999999998876  344455566777777766665544


Q ss_pred             HhhcccCCCCCHHH
Q 011275          467 KRNVVETKGKSLQE  480 (489)
Q Consensus       467 ~~~~pet~~~~~~e  480 (489)
                       ..+|||++++++|
T Consensus       492 -~~lpet~~~~l~~  504 (505)
T TIGR00898       492 -LFLPETKGVPLPE  504 (505)
T ss_pred             -HcCcCCCCCCCCC
Confidence             4689999998875

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.5e-36  Score=305.15  Aligned_cols=396  Identities=19%  Similarity=0.241  Sum_probs=258.0

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhH---HHH-HHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA---EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~  127 (489)
                      ..+...++.++++||..+++...|.+.++++.+.++..   ..+ +.+..++++.+|++++|+++||+|||+++..++++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            34566788999999999999999999999875544321   112 24778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchHHH--------HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011275          128 MIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       128 ~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  199 (489)
                      ++++++++++++|++.        ++++|+++|++.|+.++....+++|++|+++||+..++...+..+|..++..+...
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875        78999999999999999999999999999999999999988888887666644322


Q ss_pred             c----c----cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011275          200 V----K----EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (489)
Q Consensus       200 ~----~----~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  271 (489)
                      +    .    ...+ ||++|++..++.++.+++...+||||+|...+++.++.++        +          ..+   
T Consensus       177 ~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------~----------~~~---  234 (490)
T PRK10642        177 ISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------E----------GLQ---  234 (490)
T ss_pred             HHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------c----------ccc---
Confidence            1    1    1234 8999999876666656666789999987543221111000        0          000   


Q ss_pred             CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHHhh
Q 011275          272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                      +.+..++++++++ +.+............ ...++....|.+.+++ ..+.+.   ........++.+++.++.|+++||
T Consensus       235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  312 (490)
T PRK10642        235 DGPKVSFKEIATK-HWRSLLTCIGLVIAT-NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR  312 (490)
T ss_pred             ccccCCHHHHHHH-hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011234445543 222222222121111 1222333345555553 345543   234455567788889999999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011275          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV  427 (489)
Q Consensus       348 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  427 (489)
                      +|||+.+..+.+...+..........   ...... + ..+.++..+....+.+ ....+.+|++|++.|+++.|+...+
T Consensus       313 ~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~  386 (490)
T PRK10642        313 FGRRPFVILGSVALFVLAIPAFILIN---SNVIGL-I-FAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNI  386 (490)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHh---CCCHHH-H-HHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHH
Confidence            99999877665433332222111111   111111 1 1112222222222222 2344678999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          428 HWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      +++++.++|.+.+.+.+..+ +...+.+..++++++.+.. ..+|||+++.+
T Consensus       387 ~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~  437 (490)
T PRK10642        387 SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence            88888888988887776544 3333334444444444433 35699987654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-38  Score=295.12  Aligned_cols=431  Identities=20%  Similarity=0.300  Sum_probs=295.2

Q ss_pred             cchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCC-C-----CchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhH
Q 011275           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-N-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (489)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~-----~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~  119 (489)
                      |++ ...+.++..+-+.|+||+.+++...|-+...+.- +     ...-..+.+-.+.++|.++||+++|+++||+|||+
T Consensus        37 w~~-fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   37 WKH-FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             HHH-HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            444 4567788888999999999988888776654421 1     11223467788889999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHhcch-------HHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHH
Q 011275          120 AFQLCALPMIIGASISATTRN-------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG  192 (489)
Q Consensus       120 ~~~~~~~~~~i~~~l~~~~~~-------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~  192 (489)
                      ++...++++++++++++++..       ..++.+.|++.|+|.|+.+|.+.+..+|....+.||...+.+...+.+|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            999999999999998887532       4567889999999999999999999999999999999988887777777666


Q ss_pred             HHHhhccc--------cc------CCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhc-CCHHHHHHHHHHHhCCCch
Q 011275          193 SLLIGIPV--------KE------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK-GRTAEAEAEFEKLLGGSHV  257 (489)
Q Consensus       193 ~~~~~~~~--------~~------~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~-~~~~~~~~~l~~~~~~~~~  257 (489)
                      |.+++..+        ..      ..+-||..|.++.+|+++.+..++..|||++|-... ++.+++.++.+|....   
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~---  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV---  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc---
Confidence            55554321        11      112399999999999999999999999999986322 3333333332222111   


Q ss_pred             hHHHHHHHh--hccCCCCcchh-HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---------
Q 011275          258 KSSLAELSK--LDRGDDGDIVK-FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---------  325 (489)
Q Consensus       258 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  325 (489)
                        .+++-+.  .+..++.+... +.+.+..++-+.++..+ ..++..=..++....+...+++..+...+.         
T Consensus       273 --~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~-~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v  349 (538)
T KOG0252|consen  273 --DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTA-GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKV  349 (538)
T ss_pred             --ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHH-HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence              1111001  11111111112 33344333434333222 222211111222223445555544433221         


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          326 ---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       326 ---~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                         ..++...+.++|..++..++|+.|||.+.+.++.++.+..+.+...+.+.. .... .+.  ...+..+....|.+.
T Consensus       350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~G-f~v--~y~l~~ff~NFGPn~  425 (538)
T KOG0252|consen  350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIG-FVV--LYSLTFFFGNFGPNA  425 (538)
T ss_pred             HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCc-eee--hHHHHHHHHhcCCCc
Confidence               122233444567777888999999999999999888887766654443221 1111 111  112223445666777


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-----QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                      .+..+.+|.||++.|+++.|++...+..++.++...+.++.+     ..+...++.+++.+++++.++. ..+||||||+
T Consensus       426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~  504 (538)
T KOG0252|consen  426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKS  504 (538)
T ss_pred             eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccC
Confidence            788899999999999999999999999999999999998888     7788899999999999887765 4688999999


Q ss_pred             HHHHHHhhcCC
Q 011275          478 LQEIEIALLPQ  488 (489)
Q Consensus       478 ~~e~~~~~~~~  488 (489)
                      ++|++++..++
T Consensus       505 leei~~e~~~~  515 (538)
T KOG0252|consen  505 LEEISNEEESN  515 (538)
T ss_pred             HHHhcChhhcc
Confidence            99998765543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.7e-35  Score=265.50  Aligned_cols=387  Identities=21%  Similarity=0.282  Sum_probs=277.6

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Q 011275           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~  153 (489)
                      .|......+.  +..+..+++...+.|..+|+..+|.++|++|||+.+..+.+...+...+.+.++|+.++.+.|.+.|+
T Consensus       101 ~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~  178 (528)
T KOG0253|consen  101 LPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGF  178 (528)
T ss_pred             HHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhc
Confidence            3445555553  45667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCChH
Q 011275          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPH  233 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~  233 (489)
                      |.|+ .|...++-.|.-|...|+..+-.. ..+.+|......+........| |||.......|..++..+.+++|||||
T Consensus       179 g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  179 GVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             cCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            9999 777777789999999999888777 8888998887777665555556 688887777888888888999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhCCCchh------------HHHHHHHhhcc---C-CCCcchhHHHhhhccchhHHHHHHHHH
Q 011275          234 WLYKKGRTAEAEAEFEKLLGGSHVK------------SSLAELSKLDR---G-DDGDIVKFEELLYGRHFRVVFIGSTLF  297 (489)
Q Consensus       234 ~l~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      |+..+++++++.+.++++...|..+            +..+|-...++   + .+....+...++.....|..+.....+
T Consensus       256 f~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iw  335 (528)
T KOG0253|consen  256 FYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIW  335 (528)
T ss_pred             hhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHH
Confidence            9999999999998888875543221            11111111111   0 011223445555433333333333333


Q ss_pred             HHHhhhhHHHHHHhHHHHHHhcCC------------------------CcchHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011275          298 ALQQLSGINAIFYFSSSVFKSAGL------------------------SSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  353 (489)
                      ....+..+. ........++ .|.                        ....-.++..+..++|.++.++++||+|||+.
T Consensus       336 fgnafsyyg-~VLlttelfq-sgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT  413 (528)
T KOG0253|consen  336 FGNAFSYYG-SVLLTTELFQ-SGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT  413 (528)
T ss_pred             HhhHHHHHH-HHHHHHHHHh-ccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence            222222211 1111122222 111                        01123467788999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHH
Q 011275          354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF  433 (489)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  433 (489)
                      +...++.++++.+++......   ....      .+.+..-.|..+...+.++|.+|+||+..|+++.|.+++++++++.
T Consensus       414 Mal~l~~f~iflfll~~c~~r---n~~t------vllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI  484 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTTCKTR---NAYT------VLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI  484 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc---chhH------HHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence            988888777776665443221   1111      1222223344455667899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          434 FVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       434 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      +.|++.  +........+..+++++++++.+...++--|||||++
T Consensus       485 ~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  485 FSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999876  3233344566778888888888877777889999975

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=7.3e-34  Score=284.71  Aligned_cols=382  Identities=19%  Similarity=0.187  Sum_probs=239.8

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCC-CchhHHHHHHHH---HHHHHHHHHHhhhhhhhcchhhHHHHHhHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFN-GNTLAEGLVVSM---CLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~s~---~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~  127 (489)
                      .+...+++.+++.+|...++...|.+.+|++.+ .++.+.+...+.   .+++..+|++++|+++||+|||+++..+.++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~  102 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM  102 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            345566788899999988898999999998632 223333333444   4445559999999999999999999999999


Q ss_pred             HHHHHHHHHhcchHH--------HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011275          128 MIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       128 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  199 (489)
                      ++++++++++++++.        .+++.|+++|++.|+.++....+++|++|+++||++.++.+.+...|.+++++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875        588999999999999999999999999999999999999888888887777665433


Q ss_pred             cc--------cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011275          200 VK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (489)
Q Consensus       200 ~~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  271 (489)
                      +.        ...+ ||++|++..++.++..+.....||+|++..        ++                    .+  +
T Consensus       183 ~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~~--------------------~~--~  231 (432)
T PRK10406        183 LQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET--------RA--------------------LK--E  231 (432)
T ss_pred             HHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------hh--------------------hc--c
Confidence            22        1234 899999887777776666666788764310        00                    00  0


Q ss_pred             CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhh
Q 011275          272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                         ..++++++++++.+.......+  .... ..+....|.+.++ +..+.+..   .......++..++..+.|+++||
T Consensus       232 ---~~~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr  305 (432)
T PRK10406        232 ---AGSLKGLWRNRRAFIMVLGFTA--AGSL-CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK  305 (432)
T ss_pred             ---cccHHHHHhhHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0123445544433332222111  1111 1222333445444 34555532   33344455667777888999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011275          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV  427 (489)
Q Consensus       348 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  427 (489)
                      ++||+.+........+...........  .......+.+.....+...+.   .+..+.+.+|.+|++.|++++|+++.+
T Consensus       306 ~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        306 IGRRTSMLCFGSLAALFTVPILSALQN--VSSPYAAFGLVMCALLIVSFY---TSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            999987765544333322222111111  111111111111111111111   123456789999999999999999998


Q ss_pred             HHHH-HHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          428 HWVI-NFFVGLLFLRLLEQLGP-QLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       428 ~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      +++. +...|.+.. +.+..|. ...+.+.+++++++.+..+  ..|++||+.
T Consensus       381 g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~--~l~~~~~~~  430 (432)
T PRK10406        381 ANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL--MLHRKGKGM  430 (432)
T ss_pred             HHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH--Hhhhccccc
Confidence            8863 444555444 4455553 3344444445555444433  245667764

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.9e-32  Score=273.24  Aligned_cols=384  Identities=18%  Similarity=0.151  Sum_probs=240.9

Q ss_pred             HHHHHHHHHhhhhccceeeccchhh-hhhhc--CCCCchhHHHHHH-----HHHHHHHHHHHHhhhhhhhcchhhHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~-----s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ......++.+++.||...++...|. +.+++  +.+..   .++..     +..+++..+|+++.|+++||+|||+++..
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA---MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            4556677888999999887776664 44444  34432   24433     34456677999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcchHH--------HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHH
Q 011275          124 CALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  195 (489)
                      +.++++++++++++++|+.        .++++|+++|++.|+.++....+++|++|+++||+.++..+.+..+|.+++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987        48889999999999999999999999999999999999999999999877765


Q ss_pred             hhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 011275          196 IGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (489)
Q Consensus       196 ~~~~~~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (489)
                      +...+.        ...+ ||++|++..++.++........||+|+|...+++.++.                       
T Consensus       180 ~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-----------------------  235 (438)
T PRK09952        180 LVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-----------------------  235 (438)
T ss_pred             HHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-----------------------
Confidence            443322        1234 89999988777666555556689998764322110000                       


Q ss_pred             ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCcc---hHHHHHHHHHHHHHHHHHH
Q 011275          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMV  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~i~~~~g~~~~g~  343 (489)
                       ++   +....+.+.++++.+.....  ......+ ..+....+.+... +..+.+..   ......++..+++.++.|+
T Consensus       236 -~~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~  308 (438)
T PRK09952        236 -KK---RIPVIEALLRHPGAFLKIIA--LRLCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAW  308 (438)
T ss_pred             -cc---cCCHHHHHHHchHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00   00001112222322222111  1111111 1122222333322 33444433   2233445667788889999


Q ss_pred             HHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011275          344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       344 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      ++||+|||+.+..+.+...++..........  .+.  ....+...++..+.... ..+..+.+.+|.+|++.|+++.++
T Consensus       309 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g~  383 (438)
T PRK09952        309 LADRFGRRRVYITGALIGTLSAFPFFMALEA--QSI--FWIVFFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAGV  383 (438)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CCh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHhH
Confidence            9999999998776655444333222211111  111  11111111221222211 123456688999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          424 CMSVHW-VINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       424 ~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      .+.+++ +++.++|.+...+.+..+  +...+...+++++++.+.. ..++||++
T Consensus       384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~~  437 (438)
T PRK09952        384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQR  437 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccccc
Confidence            888766 788889988888877543  4445555555555554443 34577653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=8.8e-32  Score=276.20  Aligned_cols=379  Identities=23%  Similarity=0.250  Sum_probs=264.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchh
Q 011275           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      .....+..+.+++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++...+...++
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            44457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHH
Q 011275          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEA  246 (489)
Q Consensus       167 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~  246 (489)
                      +|+.++++|+.+.++....+..|.++.+..+... .  + ||+.+++..++.++.++.+++.||||||+..++|.+++.+
T Consensus       197 ~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~-~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~  272 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT-R--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK  272 (521)
T ss_pred             eeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-h--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence            9999999999999994444444444444444333 2  3 8999999888888887777777899999999999999999


Q ss_pred             HHHHHhCCC----chhHHHHHH---HhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhH-HHHHHh
Q 011275          247 EFEKLLGGS----HVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKS  318 (489)
Q Consensus       247 ~l~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  318 (489)
                      .+++..+.+    ...+...+.   +........+...+.++++.+.++.......+.++     .....|+. ......
T Consensus       273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~y~gl~~~~~~  347 (521)
T KOG0255|consen  273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-----VFSLVYYGLSLNVSG  347 (521)
T ss_pred             HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-----HHhHHHHhhhhhhhh
Confidence            888875432    111111111   11111111122446677776544433332222221     11122222 122233


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc
Q 011275          319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  398 (489)
Q Consensus       319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (489)
                      .+.+........+....++....+...|++|||.....+.....++.+........... .....+...+......++  
T Consensus       348 lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  424 (521)
T KOG0255|consen  348 LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSAF--  424 (521)
T ss_pred             cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHH--
Confidence            44445566667777888888899999999999999888877777776665544322110 012222222222222222  


Q ss_pred             CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       399 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                        . +.+.+.+|++|+..|+.+.+.++..+++++.++|.+.... ........+.+++....+........+|||+++.+
T Consensus       425 --~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  425 --N-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLL-RQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             --H-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence              2 3367899999999999999999999999999999765333 22333444444566666666666678999999999


Q ss_pred             HHH
Q 011275          479 QEI  481 (489)
Q Consensus       479 ~e~  481 (489)
                      +|-
T Consensus       501 ~~t  503 (521)
T KOG0255|consen  501 PGT  503 (521)
T ss_pred             chh
Confidence            774

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.9e-32  Score=256.50  Aligned_cols=364  Identities=21%  Similarity=0.233  Sum_probs=269.0

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      .++.+.++.|..+.+..+....+|++.+|+|++..  +.|+..+.|.+++.+++++...++||+.||++++..+.+++++
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~--~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEG--AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            35677888888888888888899999999998755  5699999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      ++++++++||+.++++|++.|++.|..++....+..++.|+++|+++.++...+..++...|.++|.++.+..| ||..|
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F  170 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATF  170 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888 69999


Q ss_pred             HHHHHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          212 WVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      +.....+++..+. +..+|  |+     ++.++                           .+.+..+..+.++++..+..
T Consensus       171 ~~ia~l~ll~~~~~~~~lP--~~-----~~~~~---------------------------~~~~~~~~~~~l~~p~v~~~  216 (394)
T COG2814         171 LAIAVLALLALLLLWKLLP--PS-----EISGS---------------------------LPGPLRTLLRLLRRPGVLLG  216 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCC--Cc-----cCCCC---------------------------CCcchhHHHHHhcCchHHHH
Confidence            9866665555443 45566  21     00000                           00111123345555666655


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      .....+....++..+   .|..|...+..+++.   ++..+.++++.++|+.++|++.|| +.|+.+......+.+....
T Consensus       217 l~~t~l~~~g~F~~f---tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~  292 (394)
T COG2814         217 LLATFLFMTGHFALY---TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA  292 (394)
T ss_pred             HHHHHHHHcchhhhH---HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH
Confidence            554444443333322   233444445566654   467788999999999999999999 7777776665555555544


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP--SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (489)
                      +......       .+..+..+.+  .++.  ..|....+..++.+  ++.+..+.++.....+++..++..+.+.++++
T Consensus       293 l~~~~~~-------~~~~~~~~~~--wg~a--~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         293 LTFTGAS-------PALALALLFL--WGFA--FSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             HHHhcch-------HHHHHHHHHH--HHHH--hhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3332211       1122221222  2222  23333333333332  58899999999999999999999999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHH
Q 011275          446 LGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .|+.....+.+...+++..+..
T Consensus       362 ~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         362 LGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHH
Confidence            8887777777777666665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7.8e-32  Score=270.10  Aligned_cols=390  Identities=18%  Similarity=0.256  Sum_probs=263.7

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+.++.+.++++.....+..|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDM--EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34566677777888888888899999999998754  5688999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      .++++++++++.++++|+++|++.|..++....++.|++|+++|+++.+++..+..+|.++++.+...+.+..+ ||+.|
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f  175 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAF  175 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888877666655555 79999


Q ss_pred             HHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ++..++.++.++.....||++++...+.+.+           .+..          +.........+++.++++.++...
T Consensus       176 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
T PRK12307        176 FVGLLPVLLVIYIRARAPESKEWEEAKLSGK-----------GKHS----------QSAWSVFSLSMKGLFNRAQFPLTL  234 (426)
T ss_pred             HHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-----------cccc----------ccchhhhhHHHHHHHhhchHHHHH
Confidence            8865554444444444577755421110000           0000          000000112345566666555433


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      ........ .+........+.+..++..+.+.   +.......++.+++.++.+++.||+|||+.+..+.....+.....
T Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        235 CVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            32222111 11111122334444555556543   334455678889999999999999999998777665544433322


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ....     ......  + ..+.+...+ ..+..+....+..|.+|++.|++++|+...+.++++.++|.+.+.+.+..|
T Consensus       314 ~~~~-----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        314 FRIP-----QDNYLL--L-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHc-----cccHHH--H-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            2111     111111  1 112222222 223334445577899999999999999999999999999998888887777


Q ss_pred             Cch-hHHHHHHHHHHHHHHHHhhcccCC
Q 011275          448 PQL-LYSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       448 ~~~-~~~~~~~~~~~~~~~~~~~~pet~  474 (489)
                      ... .+.+.+..+...........||+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        386 LGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            543 233334344444444444566653

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=5.5e-32  Score=271.18  Aligned_cols=397  Identities=14%  Similarity=0.089  Sum_probs=259.1

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ....++.+...++...++..+|.+.+++|.+.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLADLGLSRS--DIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            344455555556666677889999999988744  568999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      +.+.++|++.+++.|++.|++.|...+....++.|++|+++|++.+++++.+..+|..++++++..+.+..+ ||+.|++
T Consensus       104 ~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~  182 (434)
T PRK11663        104 LFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMI  182 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHH
Confidence            999999999999999999999998888889999999999999999999999999998888887776666566 7999988


Q ss_pred             HHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHH-HhhhccchhHHH
Q 011275          214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE-ELLYGRHFRVVF  291 (489)
Q Consensus       214 ~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  291 (489)
                      .++..++. ++..++++|+|++...+...++.++. +         +..+   +.+..+.+....++ ..++++..+...
T Consensus       183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (434)
T PRK11663        183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-L---------ELAQ---QQEGAGLSRKEILTKYVLLNPYIWLLS  249 (434)
T ss_pred             HHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-c---------ccch---hccccCCChhhhHHHHHhcChHHHHHH
Confidence            66554433 33445678887642111100000000 0         0000   00000000000011 123334333332


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhc--CCchhH-HHhhHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALL-QWSFFSMAVS  364 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~-~~~~~~~~~~  364 (489)
                      ....+..    ........+.+.++ +..+.+.   +.......++..++.++.|+++||+  ++|+.. ........+.
T Consensus       250 ~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        250 FSYVLVY----VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            2221111    11222333444444 3345543   3455667788999999999999998  333322 2211122211


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      ........    .... .... .  +.+..++ ..+.......+.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.
T Consensus       326 ~~~~~~~~----~~~~-~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        326 VGSLWLMP----FASY-VMQA-A--CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHcc----cccH-HHHH-H--HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            11111111    1111 1111 1  1111111 11112223446789999999999999999999999999999999999


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          444 EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       444 ~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      +..|+...|.+.+++++++.+..+...+++++++-
T Consensus       398 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
T PRK11663        398 EIWHWTGFFVVISIAAGISALLLLPFLNAQAPREA  432 (434)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence            98998888888888888877766666777666543

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.8e-30  Score=260.37  Aligned_cols=388  Identities=20%  Similarity=0.266  Sum_probs=240.8

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHH--H---HHHHHHHHHhhhhhhhcchhhHHHHHhHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM--C---LGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~--~---~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      .....+++.+++.+|...++...|.+.+|++.+..+.. .+..+.  +   .++..+|+++.|+++||+|||+++..+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            35567788899999999999999999999987755432 233222  2   22334789999999999999999999999


Q ss_pred             HHHHHHHHHHhcchHHH--------HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011275          127 PMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       127 ~~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~  198 (489)
                      ++++++++++++++++.        ++++|+++|++.|...+....+++|++|+++|++.+++......+|..+++.++.
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999874        6889999999999999888899999999999999999988887777666666554


Q ss_pred             ccc--------cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011275          199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG  270 (489)
Q Consensus       199 ~~~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  270 (489)
                      .+.        +..+ ||++|++..+...+..+.....||++.+...+++                             .
T Consensus       175 ~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----------------------------~  224 (434)
T PRK15075        175 LLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-----------------------------P  224 (434)
T ss_pred             HHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-----------------------------c
Confidence            431        2334 8999987654433332223334454322100000                             0


Q ss_pred             CCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHHh
Q 011275          271 DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMD  346 (489)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~d  346 (489)
                      +  ....+++..+++  +........... .....+...+|.|.++++ .+.+.   +.......++.+++.++.|+++|
T Consensus       225 ~--~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D  299 (434)
T PRK15075        225 S--MREIFRSLAANW--RIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD  299 (434)
T ss_pred             c--cccHHHHHHHhH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  000011111111  111111111111 222233445556666554 46543   34455677888899999999999


Q ss_pred             hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011275          347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS  426 (489)
Q Consensus       347 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  426 (489)
                      |+|||+....+.....+...........  ....... . ....+....++. ..+....+.+|.+|++.|+++.++...
T Consensus       300 r~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~  374 (434)
T PRK15075        300 RIGRRPVLIAFTVLAILTAYPALSWLVA--APSFARM-L-AVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYS  374 (434)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHHH-H-HHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHH
Confidence            9999998766543332211111111111  1111111 1 111111122221 223344678999999999999999877


Q ss_pred             HHHH-HHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 011275          427 VHWV-INFFVGLLFLRLLEQLGPQL---LYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI  483 (489)
Q Consensus       427 ~~~~-~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~  483 (489)
                      +++. ++.++|.+.+.+.+..|..+   .+.+.+.++.....   ...++-+|..++..|.
T Consensus       375 ~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  432 (434)
T PRK15075        375 LATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIAT---LVLYRRRGARLQAAEA  432 (434)
T ss_pred             HHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH---HHhccccchhhhhhhc
Confidence            7776 47788888888888877532   23333333333222   3455666766665553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.3e-31  Score=266.34  Aligned_cols=385  Identities=15%  Similarity=0.124  Sum_probs=249.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+++..+++.+|...++...|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSAT--MFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            34455556666777877788888999999988744  5689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc------CCc
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------IAG  205 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~------~~~  205 (489)
                      +.++++++|++.+++.|+++|++.|...+....++.|++|+++|++.+++++.+..+|..++++++..+.+      ..+
T Consensus        87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332        87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            99999999999999999999999999988888899999999999999999999999998888888765532      234


Q ss_pred             hhHHHHHHHHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHHHHH-HhCCCchhHHHHHHHhhccCCCCc-chhHHHhh
Q 011275          206 WWRICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEK-LLGGSHVKSSLAELSKLDRGDDGD-IVKFEELL  282 (489)
Q Consensus       206 ~wr~~f~~~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  282 (489)
                       ||+.|++.+++.++.. +.++++||+|+..  +.-.++.++..++ ..++...   .++.++..+.+... ...+++++
T Consensus       167 -wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T TIGR02332       167 -WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRSMLREIF  240 (412)
T ss_pred             -hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc---ccccccccccccccHHHHHHHhc
Confidence             8999998766665543 4456789998420  0001111111111 1100000   00000000000000 11122222


Q ss_pred             hccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhH-HH
Q 011275          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALL-QW  356 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~-~~  356 (489)
                       ++.++...   ..+.+ .......+..|.|.++++.  +.+   .+.......++..+|.++.++++||++||+.. ..
T Consensus       241 -~~~~~~~~---~~~~~-~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~  315 (412)
T TIGR02332       241 -TPAIMLYT---LAYFC-LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL  315 (412)
T ss_pred             -ChHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence             23332221   12221 2222334445666666653  332   34456677788999999999999999987743 33


Q ss_pred             hhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011275          357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                      ......++. ++. ..   ... ..  ......+....+. ....+..+....|.+|++.|+++.|+.+..++++++++|
T Consensus       316 ~~~~~~~~~-~~~-~~---~~~-~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p  386 (412)
T TIGR02332       316 PYLFAAAGW-LLA-SA---TDH-NL--IQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSP  386 (412)
T ss_pred             HHHHHHHHH-HHH-Hh---cCC-HH--HHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhh
Confidence            332222222 111 11   111 11  1111111111111 112233445567889999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CchhHHHHHHH
Q 011275          437 LLFLRLLEQLG-PQLLYSIFGTF  458 (489)
Q Consensus       437 ~~~~~~~~~~g-~~~~~~~~~~~  458 (489)
                      .+.+.+.+..| +...+.+.+++
T Consensus       387 ~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       387 FLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhcccccccCCCCchhHHHHHHH
Confidence            98888888764 66666555443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2.3e-31  Score=259.35  Aligned_cols=348  Identities=14%  Similarity=0.087  Sum_probs=229.7

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHH
Q 011275           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      .+++.+|.+.+|+|++.+  +.|++.+.+.+|+.+++++.|+++||+|||+++..+......+.......+|++.+++.|
T Consensus         9 ~~~~~lp~i~~~~~~s~~--~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R   86 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKE--ELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ   86 (368)
T ss_pred             HHHhhHHHHHHHhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            367788999999998744  568999999999999999999999999999987766555555443333447999999999


Q ss_pred             HHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH-HHHHHHhhc
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCLAMVF  227 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~-~~~~~~~~~  227 (489)
                      +++|++.+. .......++|++|+++|+++.++...+..+|..++++++..+.+..+ ||+.|++.+++. +...+.+++
T Consensus        87 ~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        87 LLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999999986 44555667999999999999999999999999999999888776666 799998854444 344455667


Q ss_pred             ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011275          228 CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA  307 (489)
Q Consensus       228 ~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (489)
                      +||+|++.   ++..+.+                 +.          ..+++++++++.++.......+...    ..+.
T Consensus       165 lp~~p~~~---~~~~~~~-----------------~~----------~~~~~~ll~~~~~~~~~~~~~~~~~----~~~~  210 (368)
T TIGR00903       165 LPALPFQA---AEGFGFK-----------------DA----------VKEFGALAGRKDLWIIGAILGFGVA----LFDN  210 (368)
T ss_pred             cCCCCCCC---CCCcchH-----------------HH----------HHHHHHHHcChhHHHHHHHHHHHHH----HHHH
Confidence            89998641   1100000                 00          0124456666666555443333222    2334


Q ss_pred             HHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCc---hhHHH-hhHHHHHHHHHHHHHhhccCCCchhhH
Q 011275          308 IFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK---ALLQW-SFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      +..|.|.++++.+++.. ......+..+.+.+..++++||..||   +.... .....++...+.  ...   .+.   .
T Consensus       211 ~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~--~~~---~~~---~  281 (368)
T TIGR00903       211 LAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL--AFE---LNR---L  281 (368)
T ss_pred             HHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH--HHc---ccc---H
Confidence            44567777766665432 33334455556666678889988654   22221 222222221111  111   111   1


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 011275          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      ..+....+. ..+..+..+..+.+.+|++|++.|+++.|+.++.+++++..+|...+.+..  +....|.+++++++++.
T Consensus       282 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~  358 (368)
T TIGR00903       282 ALFAFIGIA-GLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAF  358 (368)
T ss_pred             HHHHHHHHH-HHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence            111111111 112222334566789999999999999999999999999999988776652  55567777777777776


Q ss_pred             HHH
Q 011275          464 AFV  466 (489)
Q Consensus       464 ~~~  466 (489)
                      +.+
T Consensus       359 ~~~  361 (368)
T TIGR00903       359 AIA  361 (368)
T ss_pred             HHH
Confidence            654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=7.6e-31  Score=259.63  Aligned_cols=366  Identities=17%  Similarity=0.170  Sum_probs=251.4

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...+.++.+....+.....+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.+++.+++
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   88 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTA--QVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH   88 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            3444555555554444555668999999998754  56899999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      +++++++|++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..++++++..+.+..+ ||+.|+
T Consensus        89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~  167 (390)
T PRK03545         89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFL  167 (390)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHH
Confidence            9999999999999999999999988888888999999999999999999999999999999988877666556 799998


Q ss_pred             HHHHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +..+..++..+. ....||.|+     ++.++                               .....+.++++.++...
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~-------------------------------~~~~~~~~~~~~~~~~~  211 (390)
T PRK03545        168 AIGGGALITLLLLIKLLPLLPS-----EHSGS-------------------------------LKSLPLLFRRPALVSLY  211 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC-----CCcch-------------------------------HHHHHHHHhCcHHHHHH
Confidence            876555544333 334565431     00000                               00123344555544433


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      ....+.....+...   .+..+...+..+.+.   +......+++.+++.++.+++.||++||... .+.....++....
T Consensus       212 ~~~~~~~~~~~~~~---~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l  287 (390)
T PRK03545        212 LLTVVVVTAHFTAY---SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHH
Confidence            32222222111111   111222223344443   4455667788999999999999999988654 3333333322222


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  448 (489)
                      ....     +.  .+......++++... .+.++....+..|..| +.|++++|+.+...+++..+++.+.+.+.+..|.
T Consensus       288 ~~~~-----~~--~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~  358 (390)
T PRK03545        288 LPAA-----NS--EWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL  358 (390)
T ss_pred             HHHh-----ch--HHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            1111     11  111111222222222 2234444556778777 6889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHhhc
Q 011275          449 QLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      ...+.+.+++.+++.++.+...
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        359 SSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHc
Confidence            8888888888888777665544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=2e-30  Score=256.39  Aligned_cols=374  Identities=13%  Similarity=0.090  Sum_probs=250.1

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....++.+.++... ....++.+|.+.+|+|++.+  +.++..+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~--~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705         11 LLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFS--VAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            33444444443332 35578899999999998754  5689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      .+++++++|++.++++|+++|++.|...+....++.|++| ++|+++++.+..+..+|..+++.++..+.++...||+.+
T Consensus        88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~  166 (393)
T PRK09705         88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL  166 (393)
T ss_pred             HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999888899999997 789999999999888888888887766655542378876


Q ss_pred             HHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ....+..++..+..+...+        +++++.+                       +++ .   +..+.+++++.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~-----------------------~~~-~---~~~~~l~~~~~~~l~  211 (393)
T PRK09705        167 AWWALPAVVALFAWWWQSA--------REVASSH-----------------------KTT-T---TPVRVVFTPRAWTLG  211 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhc--------CCCcccc-----------------------CCC-c---CCcccccCHhHHHHH
Confidence            5543433333222221111        0000000                       000 0   001122233333322


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      ....+.   . ........+.+.++.+.+.+   .+......+++.++|.++.+++.||++||+....+.....++..+.
T Consensus       212 ~~~~~~---~-~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        212 VYFGLI---N-GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HHHHHH---H-HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            222111   1 12223333444445555554   3456677889999999999999999999988777655554444332


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ....     ... ....   ..+...+.. +..|.......+.+ |++.|++..|+.+.++++++.++|.+.+.+.|..|
T Consensus       288 ~~~~-----~~~-~~~~---~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        288 IWLP-----LQL-PVLW---AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHcc-----chH-HHHH---HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2111     111 1111   111112211 12233333445555 57889999999999999999999999999989877


Q ss_pred             -CchhHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011275          448 -PQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       448 -~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~  478 (489)
                       +...+.+.+++++...+......|||+++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        358 NYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence             4556666666777776666778999988754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.8e-30  Score=258.28  Aligned_cols=379  Identities=20%  Similarity=0.224  Sum_probs=251.3

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+.++.+.++++....+...|.+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTV--DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566777788888888889999999999998755  5689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRIC  210 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~wr~~  210 (489)
                      +++++++++++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+ .||+.
T Consensus        91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~  170 (405)
T TIGR00891        91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL  170 (405)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888887766544333 37999


Q ss_pred             HHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      |++..++.++..+.....||++++...+++.++.++..++..+.++...      . +.+  ......++..  ++.+..
T Consensus       171 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~--~~~~~~~~~~--~~~~~~  239 (405)
T TIGR00891       171 FFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA------N-IVM--TLAAAMVQSA--GKRWPT  239 (405)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh------h-hhh--hhhHHhhhhh--hhhhHH
Confidence            9887766666666666789987654322221111111111111100000      0 000  0000011110  111111


Q ss_pred             HH-HHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHH
Q 011275          291 FI-GSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (489)
Q Consensus       291 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  365 (489)
                      +. .........+. ......+.+.++ +..+.+.   +.......++.+++.++.+++.||+|||+.+..+.....+..
T Consensus       240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence            11 11111111111 111112223333 3345443   345566778899999999999999999998766654432222


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (489)
                      ......     .... .... ....+.. ....+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+.
T Consensus       319 ~~~~~~-----~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       319 IPVFAI-----GANV-AVLG-LGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHh-----CCch-HHHH-HHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221111     1111 1111 1111111 122233445556789999999999999999999999999999999999888


Q ss_pred             hC-CchhH
Q 011275          446 LG-PQLLY  452 (489)
Q Consensus       446 ~g-~~~~~  452 (489)
                      .| +...+
T Consensus       391 ~g~~~~~~  398 (405)
T TIGR00891       391 LDEYGTAL  398 (405)
T ss_pred             ccccchhH
Confidence            77 44433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.9e-30  Score=257.11  Aligned_cols=371  Identities=21%  Similarity=0.264  Sum_probs=252.9

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      +....+..+..++++++....+...|.+.+|+|.+.  .+.+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         14 ALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDV--AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            444566677788889998888889999999998864  456899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011275          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~  209 (489)
                      ++.++++++++++.+++.|+++|++.+...+....++.|++|+++|++.+++++.+..+|..+++.++..+.+..+ ||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  170 (406)
T PRK11551         92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRH  170 (406)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHH
Confidence            9999999999999999999999999999988899999999999999999999999999998888888766655555 799


Q ss_pred             HHHHHHHHHHH-HHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc---c
Q 011275          210 CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG---R  285 (489)
Q Consensus       210 ~f~~~~~~~~~-~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  285 (489)
                      .|++..+..++ ..+...++||+|++...+++.++.++.                              .+..++.   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~  220 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGEGRAT  220 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhhhhhh
Confidence            98875544333 333455679987653221111100000                              0000110   1


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHH
Q 011275          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  362 (489)
                      ...........    .....+....+.+.+.+..+.+   .+.......++..++.++.|++.||+|||+.+........
T Consensus       221 ~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  296 (406)
T PRK11551        221 ATLLLWISYFF----TLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL  296 (406)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11111111111    1111222233445555555554   3455666778899999999999999999998766544444


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      ++.......     .. ... +.+ ........ ..+..+....+..|.+|++.|+++.|+.+.+.+++++++|.+.+.+
T Consensus       297 ~~~~~~~~~-----~~-~~~-~~~-~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  367 (406)
T PRK11551        297 ASLAALAAA-----PS-FAG-MLL-AGFAAGLF-VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL  367 (406)
T ss_pred             HHHHHHHhc-----Cc-HHH-HHH-HHHHHHHH-HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence            433322111     11 111 111 11111111 1223445566889999999999999999999999999999998888


Q ss_pred             HHHhCC-chhHHHHHHHHHHHHHHH
Q 011275          443 LEQLGP-QLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       443 ~~~~g~-~~~~~~~~~~~~~~~~~~  466 (489)
                      .+..+. ...+.....+.+++.+..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        368 LALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             hccCCchHHHHHHHHHHHHHHHHHH
Confidence            775443 233433444444443333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.5e-31  Score=270.62  Aligned_cols=387  Identities=15%  Similarity=0.125  Sum_probs=241.6

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH
Q 011275           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      ...++.++...+-..++...|.+.+|+|++.+  +.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~  110 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTT--ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLG  110 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHH
Confidence            33444344444666778889999999998744  5689999999999999999999999999999998888887777666


Q ss_pred             HHh-----cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--Cchh
Q 011275          135 SAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--AGWW  207 (489)
Q Consensus       135 ~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~w  207 (489)
                      .+.     ++|++.+++.|+++|++.|...+....+++|++|+++||++++++..+..+|..+++++...+...  .++|
T Consensus       111 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~  190 (467)
T PRK09556        111 FGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV  190 (467)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence            554     689999999999999999999999999999999999999999999999999988777765433221  2358


Q ss_pred             HHHHHHHHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhcc
Q 011275          208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGR  285 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  285 (489)
                      |..|.+.++..++..+ .+++.+++|+..   +..++ ++..+    + ...+  ++ ...++++......+ +..++++
T Consensus       191 ~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~----~-~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        191 IGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG----E-PISE--ED-KETESTDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc----C-ccch--hh-hccccccCcHHHHHHHHHHcCh
Confidence            8888775554444433 344456666421   11111 10000    0 0000  00 00000000000111 2245555


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHH
Q 011275          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  361 (489)
                      .++.......+...    .......+.|.++ +..|.+.   +.......++..++.+++|+++||++||+.........
T Consensus       259 ~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~  334 (467)
T PRK09556        259 VIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALA  334 (467)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            55544332222111    1222334455444 3455553   34555667888999999999999999998765543333


Q ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 011275          362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFL  440 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~  440 (489)
                      .+........ .   ....  .......+..+. ...+..........|.+|++.|+++.|+.+.++++ ++.++|.+.+
T Consensus       335 ~~~~~~~~~~-~---~~~~--~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        335 LIIFTLGVYQ-H---ATSE--YMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHH-h---cCcH--HHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            2222111111 1   1111  111111111111 11111112234567999999999999999999997 6688999988


Q ss_pred             HHHH------------HhCCchhHHHHHHHHHHHHHHH
Q 011275          441 RLLE------------QLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       441 ~~~~------------~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .+.+            ..++...|.+++++++++.+..
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            8888            4567777777766666654433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=1.7e-30  Score=257.40  Aligned_cols=380  Identities=18%  Similarity=0.170  Sum_probs=250.5

Q ss_pred             ccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHH
Q 011275           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l  144 (489)
                      .+...++...|.+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++++++..++++++|++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893         8 LDRANLSFAAPMLQEDLGLSAA--QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             HHHHhhhHhHHHHHHhhCCChh--hHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3445567778889999988654  56899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      +++|++.|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.|+...+..++..+.
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988888776655556 799998765555544433


Q ss_pred             -hhcccCChHHHHhcCCHHHHHHH-HHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011275          225 -MVFCAESPHWLYKKGRTAEAEAE-FEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       225 -~~~~pEsp~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                       .+..||+|+.  .+...++.++. .++..         .+. +.++.+.......++.+++++++.......+....  
T Consensus       165 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  230 (399)
T TIGR00893       165 WLKFIPDPPQK--AKWLTEEEKYIVVGGLL---------AEQ-QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIG--  230 (399)
T ss_pred             hhheecCCCCc--cccCCHHHHhhcchhhc---------ccc-ccccccCCCccchHHHhcCHHHHHHHHHHHHHHhH--
Confidence             3456666531  01111111100 00000         000 00111112223455566665555444333322221  


Q ss_pred             hhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHH-hhHHHHHHHHHHHHHhhccCC
Q 011275          303 SGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~  377 (489)
                        ......+.+..+ +..+.+   .+.......++.+++.++.++++||++||+.... ......++........... .
T Consensus       231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  307 (399)
T TIGR00893       231 --LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N  307 (399)
T ss_pred             --HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c
Confidence              122222333333 223433   3556667778889999999999999999962111 1111111111111000000 0


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHH
Q 011275          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFG  456 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~  456 (489)
                      .....+..+.  ......+..+..+....+.+|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..| +...+.+.+
T Consensus       308 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~  385 (399)
T TIGR00893       308 YVNIPYAALA--LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA  385 (399)
T ss_pred             cchhHHHHHH--HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence            0111111111  1111222333567778899999999999999999999999999999999988888877 777777777


Q ss_pred             HHHHHHHHHH
Q 011275          457 TFCLMAVAFV  466 (489)
Q Consensus       457 ~~~~~~~~~~  466 (489)
                      ++++++.+..
T Consensus       386 ~~~~~~~~~~  395 (399)
T TIGR00893       386 ALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHH
Confidence            7766665544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=1.3e-29  Score=257.87  Aligned_cols=377  Identities=13%  Similarity=0.059  Sum_probs=249.3

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHH
Q 011275           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        51 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ..+..++++.++...|.++++.++|++.+|+|.+.+  +.+|+.+.|.+++.++++++|+++||+|||+++..+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~--~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGN--ELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            346677888899999999999999999999987655  457999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011275          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~  209 (489)
                      +++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.+++.....+|..+||+++..+.+..+ |||
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~  162 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGS  162 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHH
Confidence            9999999999999999999999999988877766676665 78999999999999999999999999988887777 799


Q ss_pred             HHHHHHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHH------------HHHHhCCC-chhHHH----------HHHH
Q 011275          210 CFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAE------------FEKLLGGS-HVKSSL----------AELS  265 (489)
Q Consensus       210 ~f~~~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~------------l~~~~~~~-~~~~~~----------~~~~  265 (489)
                      .|++.....++.. +..+++||+|..  .+++.+.....            ++...... ......          ....
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9998755444433 334556776531  11111111100            00000000 000000          0000


Q ss_pred             hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHH
Q 011275          266 KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVA  341 (489)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~  341 (489)
                      ..+.+ ..++..-.++++++.+.......+.....    .....++.+..++. .+.+   .+....+..++..+++++.
T Consensus       241 ~~e~~-~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        241 RTQLA-ASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHhc-CCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111 11111123566666555443332222211    12222333333332 3443   4667778888999999999


Q ss_pred             HHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHH
Q 011275          342 MVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAM  421 (489)
Q Consensus       342 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  421 (489)
                      |++.||+|+|+.+..+.....++...+....  ...+ .  +......++.+++.+... +.......+..|++.++.+.
T Consensus       316 g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~~~~-~--~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~  389 (495)
T PRK14995        316 GILVSRLGLRLVATGGMALSALSFYGLAMTD--FSTQ-Q--WQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAG  389 (495)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--CCCc-h--HHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHH
Confidence            9999999999987777666555544332221  1111 1  111112222233322222 22334566778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011275          422 AVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      ++.+....+++.+++.+.+.++
T Consensus       390 ~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        390 AIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888877665554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=7.1e-31  Score=244.87  Aligned_cols=379  Identities=16%  Similarity=0.160  Sum_probs=254.5

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHH
Q 011275           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      .-++.+.|.+.+|.++|  ..|.|++.+.+.+.|.++.++.|.++||.+.|..+..++++.++.+++.+++++...+.+.
T Consensus        46 knF~~a~p~l~e~~~ls--k~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l  123 (448)
T COG2271          46 KNFNLAMPALIEDGGLS--KTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVL  123 (448)
T ss_pred             HhHhhccHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34677889999998876  4467999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhh--cccccCCchhHHHHHHHHHHHHHHHHH-
Q 011275          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEIAGWWRICFWVSIVPAAILCLA-  224 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~wr~~f~~~~~~~~~~~~~-  224 (489)
                      -+++|+.-|...|.+...++.|+|++|||+..++++.+.++|..+.+++.  ..+..+. +||..|++.++.++++.++ 
T Consensus       124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~  202 (448)
T COG2271         124 WVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALIL  202 (448)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999966666555  4444433 4899999876666665444 


Q ss_pred             hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC--CCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011275          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD--DGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       225 ~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      ++...++|+-.   +-+     .+++..++..     +..++.++.+  ...+.-.+.+++++..|.+.++.+...+.-+
T Consensus       203 ~~~~rd~Pqs~---GLP-----~ie~~~~d~~-----e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~  269 (448)
T COG2271         203 LFLLRDRPQSE---GLP-----PIEEYRGDPL-----EIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY  269 (448)
T ss_pred             HHHhCCCcccc---CCC-----CHHHhhcCch-----hhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            44566666421   111     0111111100     0000111111  1112234456677777766555444333222


Q ss_pred             hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011275          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      ......+.|..+..+.+..+++......=++.++|+++.||++||+  |||.+....+......++......    +.. 
T Consensus       270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----~~~-  344 (448)
T COG2271         270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----PNG-  344 (448)
T ss_pred             HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----CCc-
Confidence            2223333333333222223345666777789999999999999996  777765444333332222222211    111 


Q ss_pred             hhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 011275          381 SLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQLGPQLLYSIFGTF  458 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~  458 (489)
                      ..++..  .+++.+++.. |..-+......|..|++..|++.|+...++++ |+..++...+.+.|..||...|.++.+.
T Consensus       345 ~~~l~~--~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~  422 (448)
T COG2271         345 SYLLDA--ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIA  422 (448)
T ss_pred             cHHHHH--HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHH
Confidence            111111  1222222221 22223445678999999999999999999999 7777777777777778998888888877


Q ss_pred             HHHHHHHHHhh
Q 011275          459 CLMAVAFVKRN  469 (489)
Q Consensus       459 ~~~~~~~~~~~  469 (489)
                      ++++.+++...
T Consensus       423 a~l~~lll~~~  433 (448)
T COG2271         423 ALLAILLLLPV  433 (448)
T ss_pred             HHHHHHHHHHH
Confidence            77776555433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=3.4e-29  Score=256.04  Aligned_cols=398  Identities=18%  Similarity=0.221  Sum_probs=253.3

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+.++.+++.++....++.+|.+.+++|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTV--QAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34556667777888888888889999999988744  5578899999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      .++.++++|++.+++.|++.|++.+...+....++.|++|+++|++..+++..+..+|..+++.++..+.+..+ ||+.|
T Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f  177 (496)
T PRK03893         99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALF  177 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999888888777666656 79999


Q ss_pred             HHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH--H-----HHH-hhccCCCCcchh------
Q 011275          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL--A-----ELS-KLDRGDDGDIVK------  277 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~--~-----~~~-~~~~~~~~~~~~------  277 (489)
                      ++..++.++.++.....||++++...+++.++.++..+.....+......  .     ... ............      
T Consensus       178 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (496)
T PRK03893        178 FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL  257 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence            88666555555555667888765332211111111111110000000000  0     000 000000000000      


Q ss_pred             ----HHHh-hh-ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHHhh
Q 011275          278 ----FEEL-LY-GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       278 ----~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                          +... .+ .+..+..........+..+........+.+.+++ ..+.+.   +.......++..++.++.++++||
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr  337 (496)
T PRK03893        258 CAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW  337 (496)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0000 00 0000000000000000000000112233444443 445543   455667778899999999999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011275          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV  427 (489)
Q Consensus       348 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  427 (489)
                      +|||+.+..+.....+........     .... .+.. ...+........+..+....+..|.+|++.|++++|+...+
T Consensus       338 ~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  410 (496)
T PRK03893        338 LGTRKAYVCSLLISQLLIIPVFAI-----GGAN-VWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNV  410 (496)
T ss_pred             hcchHHHHHHHHHHHHHHHHHhhc-----cccH-HHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhh
Confidence            999998766554444332222111     1111 1111 11111111222333445556788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 011275          428 HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  459 (489)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  459 (489)
                      ..+++.++|.+.+.+.+..|+...+...+.++
T Consensus       411 ~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        411 GALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             hhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            99999999998888888888776665544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=2.7e-28  Score=245.83  Aligned_cols=376  Identities=13%  Similarity=0.131  Sum_probs=231.3

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc----chHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----RNLIGML  145 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l~  145 (489)
                      +...+|.+.++ |++.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++    .+++.++
T Consensus        48 ~~~~~p~l~~~-g~s~~--~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  124 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF  124 (452)
T ss_pred             HHHhhHHHHHc-CCCHH--HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHH
Confidence            45567877776 77644  56899999999999999999999999999999999999999999888775    3788889


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHHHHHHH-HHH
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCL  223 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~  223 (489)
                      +.|++.|++.|...+.....+.|++|+++|++.+++++.+..+|. +++++.+.......+ ||+.|++..+..++ .++
T Consensus       125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        125 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence            999999999998888777888999999999999999998888875 556654322222224 79999886554444 344


Q ss_pred             HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhccchhHHHHHHHHHHHHhh
Q 011275          224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       224 ~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      ..+++||+|+.... .+.++.+++.+         +   +....+.++......+ ...++++.++.......+....  
T Consensus       204 ~~~~~~~~~~~~~~-~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  268 (452)
T PRK11273        204 AFAMMRDTPQSCGL-PPIEEYKNDYP---------D---DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL--  268 (452)
T ss_pred             HHHHccCCHhhcCC-CChhhhhhccc---------c---ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH--
Confidence            55667888753211 11111000000         0   0000000000000111 1244455555443333322221  


Q ss_pred             hhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHh-hHHHHHHHHHHHHHhhcc
Q 011275          303 SGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWS-FFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~-~~~~~~~~~~~~~~~~~~  375 (489)
                        .+....|.|.++++ .+++   .+.......++.+++.++.|+++||+  +||...... .....++.......   .
T Consensus       269 --~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~---~  343 (452)
T PRK11273        269 --RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN---P  343 (452)
T ss_pred             --HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh---c
Confidence              12233344554543 3444   33445566788889999999999999  455432221 11111221111111   0


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhHH
Q 011275          376 IPGSASLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF-VGLLFLRLLEQLGPQLLYS  453 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  453 (489)
                       ....  .......+  ..++.. +..+....+..|.+|++.|+++.|+.+...++++.+ +|.+.+.+.+..|+...|.
T Consensus       344 -~~~~--~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~  418 (452)
T PRK11273        344 -AGNP--TVDMACMI--VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  418 (452)
T ss_pred             -ccCh--HHHHHHHH--HHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence             1111  11111111  111111 111223345679999999999999999999988765 6888888889999888888


Q ss_pred             HHHHHHHHHHHHHH-hhcccCC
Q 011275          454 IFGTFCLMAVAFVK-RNVVETK  474 (489)
Q Consensus       454 ~~~~~~~~~~~~~~-~~~pet~  474 (489)
                      +++++++++.++.. ...+|+|
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        419 VMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHHHHHHHHHHHhccccc
Confidence            88877777655443 3344444

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=2.8e-28  Score=247.48  Aligned_cols=379  Identities=16%  Similarity=0.184  Sum_probs=248.5

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...++++.++..++.+.+++.+|.+.+|+|.+..  +.+++.+.+.++..++.+++|+++||+|||+++..+.++++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPL--HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            4456667778888888889999999999887644  55788899999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      ++++++++++.+++.|+++|++.|...+....++.|++|+++|++..+++.....+|..+++.+++.+.+..+ ||+.|+
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~  168 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFL  168 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHH
Confidence            9999999999999999999999999998999999999999999999999999999999999988877776666 799998


Q ss_pred             HHHHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHH---------HhCCCc---hhHHHH-----------HHHhhc
Q 011275          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEK---------LLGGSH---VKSSLA-----------ELSKLD  268 (489)
Q Consensus       213 ~~~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~---------~~~~~~---~~~~~~-----------~~~~~~  268 (489)
                      +......+..+. ....|+++.   .+.|.+........         ..+.+.   ......           .....+
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA  245 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            865444433333 233454431   11122211110000         000000   000000           000001


Q ss_pred             cCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHH
Q 011275          269 RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVL  344 (489)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l  344 (489)
                      +.+..+..+ .++++++++.......++......    ...++.+.+++. .+.+   .++...+..++..++.++.+++
T Consensus       246 ~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  320 (471)
T PRK10504        246 RNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSG----MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV  320 (471)
T ss_pred             hcCCCCccC-HHHhcccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111122 246777777766554444333221    122223333332 3333   3455566667777888899999


Q ss_pred             HhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH
Q 011275          345 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC  424 (489)
Q Consensus       345 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  424 (489)
                      .||+|||+++..+.....+...+.....    ......... ....+.+.+.+.... .......+..|++.|+++.++.
T Consensus       321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~  394 (471)
T PRK10504        321 VNRFGYRRVLVATTLGLALVSLLFMLVA----LLGWYYLLP-FVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLL  394 (471)
T ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHhcc----ccccHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHH
Confidence            9999999988777665555544433211    111111111 111122222222222 2335667889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Q 011275          425 MSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~g~  448 (489)
                      +....++..+++.+.+.+++..++
T Consensus       395 ~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        395 SMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999888777665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=7.6e-29  Score=243.98  Aligned_cols=350  Identities=20%  Similarity=0.180  Sum_probs=235.6

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      .++..|.+.+|+|.+.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|+
T Consensus        22 ~~~~~~~~~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVT--AVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG   99 (377)
T ss_pred             hhhHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678999999988644  5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh-hcc
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFC  228 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~  228 (489)
                      +.|++.|..++....++.|++| ++|+++.++...+..+|..+++.+...+.+..+ ||+.|++..+..++..+.. ++.
T Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHhe
Confidence            9999999888777778888887 579999999999998886654333333333344 7999988666555544443 344


Q ss_pred             cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHH
Q 011275          229 AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI  308 (489)
Q Consensus       229 pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (489)
                      +|.|+.   +.++++            .              ...+....++.++++.++.............   . ..
T Consensus       178 ~~~~~~---~~~~~~------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~  224 (377)
T TIGR00890       178 GYPPGQ---LIKTNI------------E--------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSG---L-LL  224 (377)
T ss_pred             ecCchh---ccccCc------------c--------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHH---H-HH
Confidence            443320   000000            0              0000012334455555544433222221111   1 11


Q ss_pred             HHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHH
Q 011275          309 FYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  385 (489)
Q Consensus       309 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                      ..+.+...++.+.+.   +.......++..++.++.+++.||+|||+.+..+.....++........     ..... ..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~  298 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----MLNDV-LF  298 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----cchhH-HH
Confidence            112222334444433   3455667788899999999999999999988776666555544332211     11111 11


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 011275          386 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      .....+...... +..+....+.+|.+|++.|++..|+.+....+++.++|.+.+.+.+..|+...|.+.+++++++.
T Consensus       299 ~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       299 LATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            111111222221 12234445788999999999999999999999999999998888888888888877777666553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=5.3e-28  Score=240.21  Aligned_cols=372  Identities=17%  Similarity=0.197  Sum_probs=244.2

Q ss_pred             HHHHHHHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ...+++..++...+.++..+.+|. +.+++|.+.  .+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSA--FLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            345566667777777778888886 567788764  45689999999999999999999999999999999999988887


Q ss_pred             HHHHHhc--------chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011275          132 ASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (489)
Q Consensus       132 ~~l~~~~--------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  203 (489)
                      ++.++.+        .++..+++.|+++|++.+...+....++.|+.|+++|++++++.+.+..+|..+++.++..+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            7766543        25667899999999999999888888899999999999999999999999988888887776666


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhh
Q 011275          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (489)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (489)
                      .+ ||+.+++..+..++..+.....||++.     .+ ++ +                              .+.++.++
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~------------------------------~~~~~~~~  216 (399)
T PRK05122        175 GG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VK-GE-R------------------------------LPFRRVLG  216 (399)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC-cc-c------------------------------hhHHHHHH
Confidence            66 688887654444333322222233210     00 00 0                              00111111


Q ss_pred             ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHH
Q 011275          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (489)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  362 (489)
                        +.+.......+..+.    ......+.+..+.+.+. ..+.......++..++.++.+++.||+++|+.+..+....+
T Consensus       217 --~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~  290 (399)
T PRK05122        217 --RVWPYGMGLALASIG----FGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI  290 (399)
T ss_pred             --HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              001110001111111    11111222222333333 23445556678888999999999999999998776665555


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      ++........     + .  +..+...++++++.+. ..|.......|.+|++.|+++.|+.+...+++..+++.+.+.+
T Consensus       291 ~~~~~~~~~~-----~-~--~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        291 LGLLLLWLAP-----S-P--WMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             HHHHHHHHhc-----c-H--HHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443332211     1 1  1111122222222221 2233334567889999999999999999999988888888888


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011275          443 LEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e  480 (489)
                      .+..|+...+.+.+++++++.+... ..++.+++..+|
T Consensus       362 ~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  398 (399)
T PRK05122        362 ASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRAVPE  398 (399)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHH-HhcccccccCCC
Confidence            8888888888887777777655544 455555555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=6.7e-29  Score=247.98  Aligned_cols=377  Identities=17%  Similarity=0.101  Sum_probs=257.1

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh----
Q 011275           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----  137 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~----  137 (489)
                      +.....++....+|.+.++++.+  +.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++..+.+.    
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGS--TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            33344456677788888887654  556799999999999999999999999999999999888877776655432    


Q ss_pred             -cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       138 -~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                       .++++.+++.|+++|++.+...+....++.|+.|+++|++..++......+|..+|+.++..+.+..+ ||+.|++..+
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~  184 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAA  184 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHH
Confidence             56788899999999999888877888889999999999999999999999999999988877655545 6888887666


Q ss_pred             HHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011275          217 PAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       217 ~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      ..++..+..+.+||+++.   +.+.++.                .++.          ...++..++++..+.......+
T Consensus       185 ~~~~~~~~~~~l~~~~~~---~~~~~~~----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T PRK10489        185 GTFITLLPLLRLPALPPP---PQPREHP----------------LRSL----------LAGFRFLLASPVVGGIALLGGL  235 (417)
T ss_pred             HHHHHHHHHHhCCCCCCC---Ccccccc----------------hHHH----------HHHHHHHHcChHHHHHHHHHHH
Confidence            655555555667775421   0000000                0000          0012223344443333322222


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011275          297 FALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      ...     ......+.+.+.++ .+.+   .+......+++.+++.++.+++.||.++++.+..+....+++....... 
T Consensus       236 ~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-  309 (417)
T PRK10489        236 LTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-  309 (417)
T ss_pred             HHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-
Confidence            111     11122233333333 4444   3455666778899999999999999777776666655444443332211 


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Q 011275          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  452 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  452 (489)
                           +.  .+......++++..... ..+....+..|..|++.|+++.|+.+...+++..+++.+.+.+.+..|....+
T Consensus       310 -----~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~  381 (417)
T PRK10489        310 -----PM--WILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASA  381 (417)
T ss_pred             -----ch--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHH
Confidence                 11  11111222222222211 12344567889999999999999999999999999999999998888887787


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCHHHHHHh
Q 011275          453 SIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA  484 (489)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~  484 (489)
                      .+.+.+.++..+.....+||+|+++++|+|+.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        382 SASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            77777776766666778899999999999864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1.2e-28  Score=251.29  Aligned_cols=377  Identities=18%  Similarity=0.199  Sum_probs=251.2

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...++++.++..++.++.++.+|.+.+|+|.+.+  +.+++.+.+.++..++.++.|+++||+|||+++..+.+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLS--QVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            3456677788888989999999999999988754  45899999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      ++++.++|++.++++|+++|++.+...+....++.|++|+++|+++.+++.....+|..+++.++..+.+..+ ||+.|+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~  160 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFL  160 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999888777666 799998


Q ss_pred             HHHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHH----------HHHhCC-Cchh-H-HHH-----------HHHhh
Q 011275          213 VSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEF----------EKLLGG-SHVK-S-SLA-----------ELSKL  267 (489)
Q Consensus       213 ~~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l----------~~~~~~-~~~~-~-~~~-----------~~~~~  267 (489)
                      +..+..++..+ ..++.||+++-  .+++.+.....+          ....++ +... . ...           .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW  238 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            86655544433 33456665321  111111110000          000000 0000 0 000           00000


Q ss_pred             ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHH
Q 011275          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMV  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~  343 (489)
                      +..+ .++....+.++++.++......++.....+    ...++.+.+++. .+.+   .+....+..++..++.++.|+
T Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~  313 (485)
T TIGR00711       239 ELTD-DNPLVDLRLFKYRNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR  313 (485)
T ss_pred             HHcC-CCCccCHHHHcCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000 111112345666666655444333332222    222333333332 3443   356667778889999999999


Q ss_pred             HHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011275          344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       344 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      +.||+|||+.+..+.....++........   .+... ........++.+++.+....+.. ....|..|++.|+++.|+
T Consensus       314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~  388 (485)
T TIGR00711       314 MGDKIDPRKLVTIGLILYAVGFYWRAFTF---TPDTP-FLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSL  388 (485)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHhccC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHH
Confidence            99999999988777665555544332111   11111 11111112222232222222332 345577899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011275          424 CMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~  444 (489)
                      .+....+++.+++.+.+.+.+
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888777665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=2.7e-28  Score=244.93  Aligned_cols=385  Identities=13%  Similarity=0.088  Sum_probs=238.5

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc----chH
Q 011275           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----RNL  141 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----~~~  141 (489)
                      +...+....|.+. +.|.+.  .+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+..    .++
T Consensus        42 ~~~~~~~~~p~~~-~~g~s~--~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (438)
T TIGR00712        42 VRKNFALAMPYLV-EQGFSK--GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSI  118 (438)
T ss_pred             HhccHHhhhHHHH-HcCCCH--hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchH
Confidence            3333445566665 457654  456899999999999999999999999999999999999999988887664    467


Q ss_pred             HHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhc-ccccCCchhHHHHHHHHHHHHH
Q 011275          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI-PVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       142 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      ..+.+.|++.|++.|...+....++.|++|+++||+++++++.+..+|..+++.+.. ......+ ||+.|++..+..++
T Consensus       119 ~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i  197 (438)
T TIGR00712       119 AIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAICAII  197 (438)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence            778899999999999888888889999999999999999999998888766655433 3332334 79999986655554


Q ss_pred             H-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011275          221 L-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (489)
Q Consensus       221 ~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      . ++..+++||+|+....  +..+..   +   .+.. ++ ..  ++.+++.+.+.......++++.++.......+...
T Consensus       198 ~~~~~~~~~~~~~~~~~~--~~~~~~---~---~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (438)
T TIGR00712       198 VALFAFAMMRDTPQSCGL--PPIEEY---R---NDYP-DD-YN--EKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYL  265 (438)
T ss_pred             HHHHHHHhccCCHHhcCC--CCchhc---c---cccc-cc-cc--cccccccchHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            3 3445667888753210  000000   0   0000 00 00  00000000000011234455555544333222221


Q ss_pred             HhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011275          300 QQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  375 (489)
                          ..+....+.|.++++ .+.+   .++......++.+++.+++++++||+++++....+.....+............
T Consensus       266 ----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (438)
T TIGR00712       266 ----LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP  341 (438)
T ss_pred             ----HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC
Confidence                122333445555543 3544   34566677788899999999999999654322223222211111111111110


Q ss_pred             CCCchhhHHHHHHHHHHHHHHh-cCccccccccccccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhHH
Q 011275          376 IPGSASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRLLEQLGPQLLYS  453 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~  453 (489)
                       ...  .+....  ..+..++. .+..........|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..|+...+.
T Consensus       342 -~~~--~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~  416 (438)
T TIGR00712       342 -AGN--PLVDMI--CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  416 (438)
T ss_pred             -CCc--hHHHHH--HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHH
Confidence             011  111111  11112221 12112223456799999999999999999988875 568888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhcccCCC
Q 011275          454 IFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       454 ~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      ++.++++++.+.....+||.|+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       417 VMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhccC
Confidence            8888787787777788888764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=1.2e-27  Score=235.97  Aligned_cols=361  Identities=14%  Similarity=0.137  Sum_probs=238.2

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ...+...+..+......++.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIP--AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHH--HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            345556677777777788899999999988754  468999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      ++++++|++.+++.|+++|++.|...+....++.|++|+++|++.++.+..+..+|..++++++..+.+..+ ||+.|++
T Consensus        84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~  162 (382)
T PRK10091         84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLL  162 (382)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHH
Confidence            999999999999999999999998888888889999999999999999999999998888888777666556 7999998


Q ss_pred             HHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011275          214 SIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++.. ....++||.++    +.+ .+.+             +                  ..+.++++..+....
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~----~~~-~~~~-------------~------------------~~~~~~~~~~~~~~~  206 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRD----EAK-GGLR-------------E------------------QFHFLRSPAPWLIFA  206 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCc----ccc-cCHH-------------H------------------HHHHhcChHHHHHHH
Confidence            665544433 33445677531    000 0000             0                  001122222222221


Q ss_pred             HHHHHHHHhhhhHHHHHHh-HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          293 GSTLFALQQLSGINAIFYF-SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      ...+.   . .+......+ .+...+..+.+.   +.......++..++.++.+++.||+|+|+.+..+....+++....
T Consensus       207 ~~~~~---~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        207 ATMFG---N-AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHH---H-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            11111   1 111111122 222223345543   345566778899999999999999999998877766555554333


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  447 (489)
                      .....    . ....  ....++...+......+.......+..|.+.++.+.  .+...+++..++|.+.+.+.+. .+
T Consensus       283 ~~~~~----~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~  353 (382)
T PRK10091        283 FFFGG----M-KTAS--LIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLA  353 (382)
T ss_pred             HHHHh----h-HHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccC
Confidence            22111    1 1111  111111222211111222223344555555555543  4566788999999988888885 56


Q ss_pred             CchhHHHHHHHHHHHHHHH
Q 011275          448 PQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~  466 (489)
                      +...+.+.++++++....+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        354 YNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence            7777777666665554433

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=8.5e-28  Score=238.40  Aligned_cols=374  Identities=20%  Similarity=0.250  Sum_probs=242.2

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      .....+..+..+++....+...|.+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~   96 (398)
T TIGR00895        19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPV--QLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT   96 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHH--HHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3444555566677666777788999999887644  56889999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      ++.+++++++.+++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.+..+ ||+.|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~  175 (398)
T TIGR00895        97 LLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFY  175 (398)
T ss_pred             HHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeehh
Confidence            9999999999999999999999999999999999999999999999999999999999988888777666556 688887


Q ss_pred             HHH-HHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          213 VSI-VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~-~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +.+ +..+...+...++||++++...+ +.++..+..++.......+.. ++..+.++++.......+..++.+..+...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR00895       176 VGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTARITV  253 (398)
T ss_pred             hhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhHHHHH
Confidence            763 44444455566789998765544 333333332222111000000 000000000000111122223222222222


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      .......+.. ........+.+...+..+.+.   +.......++..++.++.++++||++||+.. ......++...+.
T Consensus       254 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~  331 (398)
T TIGR00895       254 LLWLLYFMLL-VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLV  331 (398)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHH
Confidence            2111221111 122233334455555555543   3455667788899999999999999998443 3333333322222


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      ....    .+...   .....++.++..+ +..+....+..|.+|++.|+++.|+...+.+++..++|.+.+.
T Consensus       332 ~~~~----~~~~~---~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       332 GSTL----FSPTL---LLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHh----hCHHH---HHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            2111    11111   1111222222222 1234556789999999999999999999999999888877654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=2.5e-27  Score=235.84  Aligned_cols=357  Identities=17%  Similarity=0.139  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      ....+.+.++.+...++.+.+.+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+..+..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   89 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAE--WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI   89 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3344555666666677778888899999999988644  55788999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011275          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~  209 (489)
                      ++..+...+++++.+++.|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+
T Consensus        90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~  168 (406)
T PRK15402         90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRG  168 (406)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccH
Confidence            9999999999999999999999999988888888899999999999999898887777888888888776655555 799


Q ss_pred             HHHHHHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011275          210 CFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|++..+..++..+ ..+..||+++.   +++..+             .++    .          ...+++.+++++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~~----~----------~~~~~~~~~~~~~~  218 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGR---VGEKLS-------------LKE----L----------GRDYKLVLKNRRFV  218 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcc---cccccc-------------HHH----H----------HHHHHHHHcCcHHH
Confidence            99876555444433 33456776431   000000             000    0          01223445555555


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHH
Q 011275          289 VVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  364 (489)
                      .......+.......    ...+.+.++ +..+.+.   +.......++.+++.++.+++.||+++|+.+..+.....++
T Consensus       219 ~~~~~~~~~~~~~~~----~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        219 AGALALGLVSLPLLA----WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHH----HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            443332222211111    111222222 2334442   34445556778889999999999999999887776655555


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (489)
                      ..+........ ... ..+ .+....++..+..... +........ .+++.|++..++.+....++..+++.+...+.+
T Consensus       295 ~~~~~~~~~~~-~~~-~~~-~~~~~~~~g~g~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        295 LLLAALATVIS-SHA-YLW-LTAGLSLYAFGIGLAN-AGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHcc-ccc-HHH-HHHHHHHHHHHHHHHh-hhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            54443322111 111 111 1122223333322211 222222222 244889999999999999998888887777666


Q ss_pred             HhCC
Q 011275          445 QLGP  448 (489)
Q Consensus       445 ~~g~  448 (489)
                      ..+.
T Consensus       370 ~~~~  373 (406)
T PRK15402        370 GGGN  373 (406)
T ss_pred             CCch
Confidence            5553

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=5.5e-27  Score=233.12  Aligned_cols=366  Identities=16%  Similarity=0.143  Sum_probs=227.4

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH
Q 011275           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      .+.+..++...+.++..+++|++.++++.+.+  +.++..+.+.+|+.+++++.|+++||+|||+++..+.+++++++++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVS--LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            34555566667788899999999999987655  4578899999999999999999999999999999999999999999


Q ss_pred             HHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011275          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~  214 (489)
                      ++.++|++.++++|+++|++.+...+....++.|++|+++|++.++++.....+|..++++++..+.+..+ ||+.|++.
T Consensus        98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~  176 (413)
T PRK15403         98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAII  176 (413)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            99999999999999999999887677777889999999999999999999999999999998877766555 79999987


Q ss_pred             HHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011275          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      .+..++..+. .+.+||+++   .+++..+             .+..              ...+++.++++.++.....
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~---~~~~~~~-------------~~~~--------------~~~~~~ll~~~~~~~~~l~  226 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVK---RGAVPFS-------------AKSV--------------LRDFRNVFRNRLFLTGAAT  226 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCcc---ccCCCCC-------------hHHH--------------HHHHHHHHcCHHHHHHHHH
Confidence            6665554443 455788742   0100000             0000              0123445555555544333


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHH
Q 011275          294 STLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      ..+....    ......+.|.++++ .+.+.   ++.......+.++++.+.+++.+|..+++..........++..+..
T Consensus       227 ~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~  302 (413)
T PRK15403        227 LSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLI  302 (413)
T ss_pred             HHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence            2222111    12222233444443 35543   3444556677777777777766544443433222222222222221


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 011275          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  449 (489)
                      ..... .+..  .........++..+......+... ..-+. ....++++.++.+.+...+...++.....+.. .+..
T Consensus       303 ~~~~~-~~~~--~~~~~~~~~l~~~G~~~~~p~~~~-~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~-~~~~  376 (413)
T PRK15403        303 VGNLL-WPHV--WLWSVLGTSLYAFGIGLIFPTLFR-FTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWF-NGGR  376 (413)
T ss_pred             HHHHH-cccc--HHHHHHHHHHHHHHHHHHhHHHHH-HHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc
Confidence            11100 1111  111112222233332222111111 11111 12237888888888887777777766554433 3555


Q ss_pred             hhHHHHHHHHHHHH
Q 011275          450 LLYSIFGTFCLMAV  463 (489)
Q Consensus       450 ~~~~~~~~~~~~~~  463 (489)
                      ..+...++++.+..
T Consensus       377 ~~~~~~~~~~~~~~  390 (413)
T PRK15403        377 LPFHLLAVVAGVIV  390 (413)
T ss_pred             hHHHHHHHHHHHHH
Confidence            66665555544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=1.7e-26  Score=227.85  Aligned_cols=359  Identities=18%  Similarity=0.178  Sum_probs=244.6

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      +..+.++.++.+.+.+..++.+|.+.+++|.+.  .+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~--~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPT--WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667778888888999999999999998754  467999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      .++++++|++.+++.|+++|++.+...+.....+.|..++++|++..+.+..+..+|..+|+.++..+.+... |+..+.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~  164 (381)
T PRK03633         86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPWV  164 (381)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHHH
Confidence            9999999999999999999999998888777778889999999999999999999999999998877654322 222222


Q ss_pred             HHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011275          213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       213 ~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .......+..+.....+|++      .+                            ++   +..+..+.++++.++....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~------~~----------------------------~~---~~~~~~~~~~~~~~~~~~~  207 (381)
T PRK03633        165 TGLVLAAILPLLFTRILNQQ------AE----------------------------NH---DSTSIWPMLKLRQARLGVN  207 (381)
T ss_pred             HHHHHHHHHHHHHhcccCCC------CC----------------------------CC---CCCCHHHHHHhcchHHHHH
Confidence            11111111111111111110      00                            00   0012233445555443322


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHH
Q 011275          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      ........    ......+.+.+.++.+.+.   +.......++.+++.+..+++.||+|+|+.+..+.....++.....
T Consensus       208 ~~~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~  283 (381)
T PRK03633        208 GCIISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML  283 (381)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh
Confidence            22111111    1112223444445555543   3444556678889999999999999999987776555555443221


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 011275          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  449 (489)
                        .     . .....   ...+++... ....|....+..|..|++.++...+..+...++++.++|.+.+.+.+..++.
T Consensus       284 --~-----~-~~~~~---~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~  351 (381)
T PRK03633        284 --S-----Q-AAMAP---ALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDN  351 (381)
T ss_pred             --h-----h-HHHHH---HHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence              1     0 01111   111122211 1234556667789999888888888877778889999999999888988888


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 011275          450 LLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~  467 (489)
                      +.|.+.+.+.++..+..+
T Consensus       352 ~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        352 LLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888877776655554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1.8e-28  Score=241.56  Aligned_cols=365  Identities=16%  Similarity=0.137  Sum_probs=231.7

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHH
Q 011275           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~  143 (489)
                      .++....+...|.+.+++|.+.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   85 (379)
T TIGR00881         8 YLVRKNFALAMPYLVEEIGLSKT--DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV   85 (379)
T ss_pred             HHhHHhhhhhhHHHHHHhCCCHh--HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence            34455567778889999888754  5689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHH-HhhcccccCCchhHHHHHHHHHHHHH-H
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVPAAI-L  221 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~-~  221 (489)
                      +++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++ +.+..+.+..+ ||+.|++..+..++ .
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  164 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVS  164 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888 45554444445 79998876544443 3


Q ss_pred             HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHh
Q 011275          222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (489)
Q Consensus       222 ~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
                      .+..++.+|+|+....  +.++. +.     .++ .++.   .++.+++....+...++.++++..+.......+.....
T Consensus       165 ~~~~~~~~~~~~~~~~--~~~~~-~~-----~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (379)
T TIGR00881       165 LICFLLLRDSPQSCGL--PPAEE-MP-----NEE-PDGD---AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR  232 (379)
T ss_pred             HHHheeeCCCcccccc--Ccccc-Cc-----ccc-cccc---cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4445567777642110  00000 00     000 0000   00000000111123445556665554443333222211


Q ss_pred             hhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011275          302 LSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       302 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (489)
                          .....+.+..+ +..+.+   .+.......++.+++.++.+++.||..+|+.....................  .+
T Consensus       233 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  306 (379)
T TIGR00881       233 ----TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--NP  306 (379)
T ss_pred             ----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--Cc
Confidence                12222333333 233443   345566677888999999999999864333221211111111111111111  01


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011275          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  451 (489)
                      ....... .......+. +..+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..|+...
T Consensus       307 ~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       307 AANPLMD-LICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             chhHHHH-HHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            1111111 111111111 12223334456789999999999999999999999999999999998888876544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=2.4e-26  Score=227.21  Aligned_cols=345  Identities=19%  Similarity=0.175  Sum_probs=228.1

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      ..+.+|.+.+|+|.+.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++++++.+++++++|++.+++.|+
T Consensus        39 ~~~~l~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  116 (394)
T PRK10213         39 PVSLLTPMAQDLGISEG--VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRA  116 (394)
T ss_pred             HHhhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence            34457889999988754  4578889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhcc
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFC  228 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~  228 (489)
                      ++|++.|...+....++.|++|+++|+++.++...+..+|..++++++..+.+..+ ||+.|++..+..++..+. ....
T Consensus       117 l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        117 CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999888776666 799998865544443333 2345


Q ss_pred             cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHH
Q 011275          229 AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI  308 (489)
Q Consensus       229 pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (489)
                      ||+|+.     + ++                              ...+..+.++++.++.......+.....+   ...
T Consensus       196 p~~~~~-----~-~~------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~  236 (394)
T PRK10213        196 PSLPGE-----P-SH------------------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQF---AFF  236 (394)
T ss_pred             CCCCcc-----c-cc------------------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHH---HHH
Confidence            665310     0 00                              00012234444444443332222211111   111


Q ss_pred             HHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHH
Q 011275          309 FYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  385 (489)
Q Consensus       309 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                      .+..+.+.++.+.+.   +......+++..++.++.+++.||.+++... .+.....+..........    .   .+..
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~-~~~~~~~~~~~~l~~~~~----~---~~~~  308 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA-GAPLVLAVSALVLTLWGS----D---KIVA  308 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHhh----h---HHHH
Confidence            122243444455543   4556667788999999999999996544333 332222222222111111    1   1111


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 011275          386 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      ....+++++++... .+....+..+..| +.+++..+....+.+++..+++.+.+.+.+..|....+...+.+.++..+.
T Consensus       309 ~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        309 TGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            12223333333322 2223335566667 445666777777788889999999999988888766666665555444444


Q ss_pred             H
Q 011275          466 V  466 (489)
Q Consensus       466 ~  466 (489)
                      .
T Consensus       387 ~  387 (394)
T PRK10213        387 V  387 (394)
T ss_pred             H
Confidence            3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=2.3e-27  Score=232.41  Aligned_cols=352  Identities=15%  Similarity=0.112  Sum_probs=237.8

Q ss_pred             HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh
Q 011275           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~  137 (489)
                      .+.++.....+..++.+|.+..|++.+  +.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++..+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGS--ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            344555566667778888888887654  456789999999999999999999999999999999999999888888887


Q ss_pred             cc-----hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          138 TR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       138 ~~-----~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      +.     +++.+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..++++++..+.+..+ ||+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~  162 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIW  162 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence            77     999999999999999999999999999999999999999999999999999999998877766555 799998


Q ss_pred             HHHHHHHHHHHHhhc--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          213 VSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       213 ~~~~~~~~~~~~~~~--~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      +..+..++..+..+.  .||+++    +++.+..++.             ..+.          ...++..++++.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~----------~~~~~~~~~~~~~~~~  215 (365)
T TIGR00900       163 VDAVGFAISALLIVSVRIPELAA----SEIQALSNAV-------------LRDT----------REGIKFVLKNPLLRTL  215 (365)
T ss_pred             HHHHHHHHHHHHHHhcccccCCC----ccccccchhH-------------HHHH----------HhHHHHHHcCcHHHHH
Confidence            765554444333332  233221    0000000000             0000          0123344555555544


Q ss_pred             HHHHHHHHHHhhhhH-HHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHH
Q 011275          291 FIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      .....+......... ...+++..+.++......+.......++.+++.++.+++.||++||+....+....+++.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       216 LLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            433333222211111 2223333222222222235566677788899999999999999999987766554444443332


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ...     .  ..+......+...++... ..+....+..|..|++.|+++.|+.+.+.+++..+++.+.+.+.+..|
T Consensus       296 ~~~-----~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       296 LTP-----P--NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             hhc-----h--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            211     1  111222222222222222 234556688999999999999999999999999999988888776543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=6.9e-27  Score=236.53  Aligned_cols=363  Identities=15%  Similarity=0.092  Sum_probs=214.8

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHH
Q 011275           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~  143 (489)
                      .++.....+.+|.+.+|+|++.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++++..
T Consensus        49 ~~~~~~~~~~~~~l~~~~gls~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~  126 (476)
T PLN00028         49 FVSTFAAAPLLPIIRDNLNLTKS--DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATG  126 (476)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            33334456778899999998754  5578888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc----cc-----CCchhHHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV----KE-----IAGWWRICFWVS  214 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~----~~-----~~~~wr~~f~~~  214 (489)
                      +++.|+++|++.+... ....+++|++|+++||+++++......+|..+++.+...+    .+     ..+ ||+.|++.
T Consensus       127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~  204 (476)
T PLN00028        127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVP  204 (476)
T ss_pred             HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHH
Confidence            9999999999987654 3456789999999999999998766555554443332211    11     123 89999987


Q ss_pred             HHHHHHHHHHhhcccC-ChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011275          215 IVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~~~~~pE-sp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++..++..+..++++| .|+     ++.++.    ++               +.+.++......+++.+++++.+.....
T Consensus       205 g~l~l~~~l~~~~~~~~~p~-----~~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (476)
T PLN00028        205 GLLHIIMGILVLTLGQDLPD-----GNYREL----KK---------------SGTMPKDSFSKVLRYGVTNYRTWILALT  260 (476)
T ss_pred             HHHHHHHHHHHHHHcCcCCC-----CchhhH----Hh---------------cCccccccHHHHHHHHHcCchhHHHHHH
Confidence            6666555544444443 221     111110    00               0000000001123344455554443332


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchh----HHHhhHHHHHHH
Q 011275          294 STLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKAL----LQWSFFSMAVSM  365 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~----~~~~~~~~~~~~  365 (489)
                      ........    .....+.+.++ +..+.+.   +.......++..++.+++|+++||++||+.    .....+...+..
T Consensus       261 ~~~~~~~~----~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~  336 (476)
T PLN00028        261 YGYSFGVE----LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG  336 (476)
T ss_pred             HHHHHHHH----HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            21111111    11222333333 3345553   345566778899999999999999987621    111111111111


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (489)
                      +......  . ...  ....+..++++....... .+..+.+.+|+.| +.|++..|+.+..+++++.+++.+.. ..+.
T Consensus       337 i~~~~~~--~-~~~--~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~  408 (476)
T PLN00028        337 VFCIWLG--R-ANS--LGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSS  408 (476)
T ss_pred             HHHHHhc--c-cch--HHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCC
Confidence            1111111  1 111  111111222222222111 1234456677755 78999999998888888888776543 1122


Q ss_pred             hCCchhHHHHHHHHHHHHHHH
Q 011275          446 LGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .++...|.+.+++.+++.+..
T Consensus       409 ~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        409 YSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             ccHhhHHHHHHHHHHHHHHHH
Confidence            345667777777666665433

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=2.5e-26  Score=227.67  Aligned_cols=356  Identities=17%  Similarity=0.170  Sum_probs=232.6

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHH-
Q 011275           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-  135 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~-  135 (489)
                      ++.++.....++..+.+|. +.+|+|.+.+  +.|+..+.+.+++.+++++.|+++||+|||+++..+.+.+.++.+.. 
T Consensus        22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~--~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (392)
T PRK12382         22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNT--MVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL   99 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            3344444455666777775 5678887644  56899999999999999999999999999999999888877665432 


Q ss_pred             --Hh-----cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011275          136 --AT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       136 --~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr  208 (489)
                        +.     ..+++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..++++++..+.+..+ ||
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~  178 (392)
T PRK12382        100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FA  178 (392)
T ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence              22     35788899999999999998888888889999999999999999999999999888888877666556 68


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011275          209 ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      +.+++..+..++........||++.      ++++          +                     .+.++..+  ..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~---------------------~~~~~~~~--~~~  219 (392)
T PRK12382        179 ALALTTMVLPLLAWAFNGTVRKVPA------HAGE----------R---------------------PSLWSVVG--LIW  219 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC------Cccc----------C---------------------chHHHHHH--HHH
Confidence            8777654433332222222233211      0000          0                     00001110  000


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      .......+....    ......+.+..+++.+.+ .+......+++..++.++.+++.||+|+|+.+..+.....++..+
T Consensus       220 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~  295 (392)
T PRK12382        220 KPGLGLALQGVG----FAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL  295 (392)
T ss_pred             HhHHHHHHHHHH----HhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence            000111111111    111122223333333433 334445566778889999999999999999887776655555443


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ....     .+ .  +.......+...+.+. ..|.......|.+|++.|+++.|+.+...+++..+++.+.+.+.+..|
T Consensus       296 ~~~~-----~~-~--~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        296 LWLA-----PT-A--WVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             HHHc-----cc-H--HHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3221     11 1  1111122222222221 223444567788999999999999999999999999999998889889


Q ss_pred             CchhHHHHHHHHHHHHHHHHh
Q 011275          448 PQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      +...|.+.+++.+++.+....
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             chHHHHHHHHHHHHHHHHHHh
Confidence            988888888777777665543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=9.9e-28  Score=242.99  Aligned_cols=359  Identities=14%  Similarity=0.112  Sum_probs=226.5

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc--chHHHHHHHHHHHhhhccc
Q 011275           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~R~l~G~g~g~  157 (489)
                      |++++  ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++  .++..+++.|+++|++.+.
T Consensus        70 ~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~  147 (465)
T TIGR00894        70 NFKWS--GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS  147 (465)
T ss_pred             CCCCC--HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccc
Confidence            45554  4567899999999999999999999999999999999999999998887543  5688899999999999999


Q ss_pred             ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC-chhHHHHHHHHHHHHHHHHHh-hcccCChHHH
Q 011275          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAM-VFCAESPHWL  235 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~-~~~pEsp~~l  235 (489)
                      ..+....++.|++|+++|++++++...+..+|..++++++..+.+.. + ||+.|++.++..++..+.+ .+.+|+|+. 
T Consensus       148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~-  225 (465)
T TIGR00894       148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSI-  225 (465)
T ss_pred             chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCccc-
Confidence            99999999999999999999999999999999988888877766553 5 7999998766665554444 345666642 


Q ss_pred             HhcCCHHHHH-HHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHH
Q 011275          236 YKKGRTAEAE-AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS  314 (489)
Q Consensus       236 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (489)
                        +.+.++.+ +..++             ..+.++.+.....++++.++++..+......+....    ..+....|.|.
T Consensus       226 --~~~~~~~~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~  286 (465)
T TIGR00894       226 --HPCISKFEKKYINS-------------SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPT  286 (465)
T ss_pred             --CCCCCHHHHHHHHh-------------hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence              11111111 11110             000011111122346677776666555443333222    22333345554


Q ss_pred             HHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHH---HhhHHHHHHH---HHHHHHhhccCCCchhhHH
Q 011275          315 VFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ---WSFFSMAVSM---AIQVAASSSYIPGSASLYL  384 (489)
Q Consensus       315 ~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  384 (489)
                      ++++ .+.+   .+.......++..++.+++|+++||+++|+...   ...+...++.   ......... .....  +.
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~  363 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LSAAF--YL  363 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCch--HH
Confidence            4433 3443   355666678888999999999999986543210   0001111111   111111111 01111  11


Q ss_pred             HHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-CchhHHHHHHHHHH
Q 011275          385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL--G-PQLLYSIFGTFCLM  461 (489)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g-~~~~~~~~~~~~~~  461 (489)
                      .+..+.+.... ..+..+.......|..| +.++...++.+..+.+++.++|.+.+.+.+..  + +...|.+.++++++
T Consensus       364 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i  441 (465)
T TIGR00894       364 TIIILTLANAV-SSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL  441 (465)
T ss_pred             HHHHHHHHHHH-hhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence            11112211111 11112233344557766 58999999999999999999998877665532  2 45567777766666


Q ss_pred             HHHHH
Q 011275          462 AVAFV  466 (489)
Q Consensus       462 ~~~~~  466 (489)
                      +.++.
T Consensus       442 ~~i~~  446 (465)
T TIGR00894       442 CVIFY  446 (465)
T ss_pred             HHHHe
Confidence            65543

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=1.2e-26  Score=229.84  Aligned_cols=361  Identities=14%  Similarity=0.110  Sum_probs=236.3

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ....+++.++.+.+....+..+|.+.+++|++.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVS--SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3455666777788777888899999999988744  56889999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-cCCchhHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICF  211 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~wr~~f  211 (489)
                      .+.+++++++.+++.|+++|++.|...+....++.|++|+++|++..+.......+|..+++.+...+. +..+ ||+.|
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f  165 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVY  165 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHH
Confidence            999999999999999999999999888888899999999999999998888777777666666654433 3334 79999


Q ss_pred             HHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +...+..++..++.++ .+.|+    .++.++          +           + ++..  .+..     .++..+...
T Consensus       166 ~~~~~~~~~~~~~~~~-~~~p~----~~~~~~----------~-----------~-~~~~--~~~~-----~~~~~~~~~  211 (394)
T PRK03699        166 ACIGLVYVAIFILTLF-SEFPA----LGKHAP----------K-----------A-DKPV--AKEK-----WGIGVLFLA  211 (394)
T ss_pred             HHHHHHHHHHHHHHHh-cCCcc----ccccCc----------c-----------c-cCcc--cccc-----CChHHHHHH
Confidence            8765555444333222 22221    000000          0           0 0000  0000     011222222


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      ....++..    .......|.|.+++ ..+.+.   +.......++..+|.++.++++||++||+.+........+....
T Consensus       212 ~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        212 IAALLYIL----AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            22222211    11223344555453 345543   44555667788999999999999999998876654443333222


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ....     .+...  ..+ ..+..+... .+..+....+..|..| +.+++..+......++++.++|.+.+.+.+..|
T Consensus       288 ~~~~-----~~~~~--~~~-~~~~~G~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g  357 (394)
T PRK03699        288 FVNT-----DDPSH--LLY-AILGLGFFS-SAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG  357 (394)
T ss_pred             HHHc-----CCchH--HHH-HHHHHHHHH-HHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence            2111     11111  111 111111111 1122333345667666 446778889999999999999999999988888


Q ss_pred             CchhHHHHHHHHHHHHH
Q 011275          448 PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~  464 (489)
                      +...+.+.+.+++++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        358 LQAALLTANGLYAVVFV  374 (394)
T ss_pred             chhhhhhhHHHHHHHHH
Confidence            87777666666555543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=9.4e-27  Score=230.07  Aligned_cols=341  Identities=19%  Similarity=0.205  Sum_probs=228.7

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      ....+......+...+.+|.+.+|+|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710        11 GCLSILGPLGIDMYLPAFPEIAADLSTPAS--IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            333455566677788899999999988654  568999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      .+++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+.+..+ ||+.|++..+
T Consensus        89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~  167 (385)
T TIGR00710        89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSL  167 (385)
T ss_pred             HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888888877666555 7998887555


Q ss_pred             HHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011275          217 PAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+ ..+..||+++.    ++.++.+             +.              ...+++.+++++++.......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~--------------~~~~~~~~~~~~~~~~~~~~~  216 (385)
T TIGR00710       168 AGILLSALIFFILPETLPY----EARIQIS-------------TY--------------FETFLLLLKSKMFWGYALIYG  216 (385)
T ss_pred             HHHHHHHHHHHhCCCCCCC----cccCCHH-------------HH--------------HHHHHHHHcCchhHHHHHHHH
Confidence            4444333 33456665421    0000000             00              011233444444443332222


Q ss_pred             HHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHH
Q 011275          296 LFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  371 (489)
                      ....    .......+.+..+ +..+.+.   +.......++..++.++.+++.||+|+|+.+..+.....++.......
T Consensus       217 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (385)
T TIGR00710       217 ASFG----GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEIT  292 (385)
T ss_pred             HHHH----HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111    1112222233333 2344443   345566778889999999999999999998877766555554443322


Q ss_pred             hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011275          372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  440 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  440 (489)
                      ....  ... ....+....+++.+... ..+....+..|.+| +.|+++.++.+...+.++.+.+...+
T Consensus       293 ~~~~--~~~-~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       293 AILG--LGS-WAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHhc--cch-HHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  011 11111111222222221 22344456678877 67999999999888877766666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=1.4e-26  Score=229.34  Aligned_cols=353  Identities=21%  Similarity=0.219  Sum_probs=214.9

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHH--HHHHH---HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV--SMCLG---GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--s~~~~---g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      .+.+|...++...+.+.+++..+.++.+.+...  +.+..   +..+++++.|+++||+|||+++..+.+++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            344444445555556666654322222333333  33333   3347999999999999999999999999999999999


Q ss_pred             hcchHH--------HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-------
Q 011275          137 TTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------  201 (489)
Q Consensus       137 ~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-------  201 (489)
                      ++++++        .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..++++++..+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            999876        47889999999999999999999999999999999999999999999888877654322       


Q ss_pred             -cCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHH
Q 011275          202 -EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (489)
Q Consensus       202 -~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (489)
                       +..+ ||+.|++..+..++..+.....||+|++...+++                            +  +....+.++
T Consensus       164 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~--~~~~~~~~~  212 (394)
T TIGR00883       164 LLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------------------H--KKKRGPIRE  212 (394)
T ss_pred             hhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------------------c--ccccCCHHH
Confidence             1234 7999988766555554444556776543111000                            0  000112333


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 011275          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (489)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~  356 (489)
                      .+++++.+ ............. .......+.+.++ +..+.+.   +.......++..++.++.+++.||+|||+.+..
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  290 (394)
T TIGR00883       213 TLTKHRKP-FLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII  290 (394)
T ss_pred             HHHhchHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            44433311 1111111111111 1122223334333 3344433   344556678888999999999999999997664


Q ss_pred             hhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH-HHHHHHH
Q 011275          357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH-WVINFFV  435 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~  435 (489)
                      ......+...........  ...  .+......+........ ..+....+.+|.+|++.|+++.++...+. .+++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~  365 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLD--SGS--FTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA  365 (394)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCc--hHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence            433333222111111110  111  11111222222222222 23445668899999999999999865554 4677788


Q ss_pred             HHHHHHHHHHhC-CchhH
Q 011275          436 GLLFLRLLEQLG-PQLLY  452 (489)
Q Consensus       436 ~~~~~~~~~~~g-~~~~~  452 (489)
                      |.+.+.+.+..| +...+
T Consensus       366 p~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       366 PYIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHHHHHHHHcCcchhHH
Confidence            888888888777 44333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=7.1e-26  Score=222.40  Aligned_cols=352  Identities=16%  Similarity=0.109  Sum_probs=218.3

Q ss_pred             cceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc-----c
Q 011275           66 HLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----R  139 (489)
Q Consensus        66 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~  139 (489)
                      .....++..+.+.+ |+|++.+  +.+++.+++.+++.++.++.|++.||+|.|+++..+.+++++.+++.+++     +
T Consensus        49 ~w~~~~~l~~~~~~~~~~ls~~--q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~  126 (462)
T PRK15034         49 VWMLFSAVTVNLNKIGFNFTTD--QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT  126 (462)
T ss_pred             HHHHHHHHHHHhhhhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            34455666666655 7888755  56899999999999999999999999999999999999999999999987     8


Q ss_pred             hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHH----HHHHhh-ccccc------------
Q 011275          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM----GSLLIG-IPVKE------------  202 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~----~~~~~~-~~~~~------------  202 (489)
                      +++.+++.|++.|++ |..++.....+++++|+++||++.++.....++|..    ++|.+. ..+..            
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g  205 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG  205 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            999999999999998 678888889999999999999999999644445543    333321 11101            


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhcc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011275          203 IAGWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (489)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~~~~~~-pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      ...|||...++-.++.++..++.++. ++.|.     .+.                                +.....+.
T Consensus       206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~--------------------------------~~~~~~~v  248 (462)
T PRK15034        206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRA--------------------------------SIADQLPV  248 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----ccc--------------------------------CHHHHHHH
Confidence            01237777766544444444333332 22211     000                                00112335


Q ss_pred             hhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhH
Q 011275          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG--LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      +++++.|......++    .+..+....++.|.+.+..--...  .......+...+..+++|+++||+|+|+++.+++.
T Consensus       249 lk~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i  324 (462)
T PRK15034        249 LQRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFI  324 (462)
T ss_pred             hCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH
Confidence            555665554433222    222233333344433332110111  12233346667777899999999999999888877


Q ss_pred             HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc---------------------hhhh
Q 011275          360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS---------------------RIRA  418 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~  418 (489)
                      .+.++..........  ............++......++|.+.+. -++++.||+                     +.-|
T Consensus       325 ~~~i~~~~~~l~lp~--~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g  401 (462)
T PRK15034        325 FMAIFSALLFLTLPG--TGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA  401 (462)
T ss_pred             HHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence            666655433222111  1111122222222222223333333333 367777774                     1577


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHH
Q 011275          419 KAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      ...|++..++.+|+++.|..++...+..| +...|.++.+.++++..
T Consensus       402 ~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  448 (462)
T PRK15034        402 AALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL  448 (462)
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            88899999999999999988887777655 34455555555555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=2.4e-26  Score=227.70  Aligned_cols=338  Identities=19%  Similarity=0.192  Sum_probs=214.9

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHH
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~  146 (489)
                      .+...+++|.+.+++|.+.+  +.++..+.+.++..+++++.|+++||+|||+++..+.+++.++..++..+++++.+++
T Consensus        19 ~~~~~~~lp~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~   96 (392)
T PRK10473         19 IDMYLVGLPRIAADLNASEA--QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA   96 (392)
T ss_pred             HHHHhhhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34455789999999887644  5678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH-Hh
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL-AM  225 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~  225 (489)
                      .|+++|++.+...+....++.|++|+++|++..++.+....+|..++++++..+.+..+ ||+.|++..+..++..+ ..
T Consensus        97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473         97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888999999999999999999999888888888888776655555 79988876554444333 34


Q ss_pred             hcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011275          226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       226 ~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      +..||++.    +++.++ .+                           .....++.+++++++.......+.....    
T Consensus       176 ~~~~~~~~----~~~~~~-~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  219 (392)
T PRK10473        176 FILKETRP----ARAPAA-SS---------------------------KPRENSESLLNRFFLSRLVITTLSVTVI----  219 (392)
T ss_pred             HHcCCCCC----cccCCc-cc---------------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHH----
Confidence            55677632    000000 00                           0001122333333332222111111111    


Q ss_pred             HHHHHhHHHH-HHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchh
Q 011275          306 NAIFYFSSSV-FKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  381 (489)
Q Consensus       306 ~~~~~~~~~~-~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      .....+.+.. .+..+.+.   +......+++..++.++.+++.||+|||+....+.....++..........     . 
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~-  293 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH-----A-  293 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH-----H-
Confidence            1111122222 23345543   344566778888999999999999999998877766555554443332111     0 


Q ss_pred             hHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 011275          382 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  457 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  457 (489)
                      .  ..........++..+.+.   ....++.|.+.|+   +...+...++..+++.+.+.+.+..|......+.+.
T Consensus       294 ~--~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        294 V--SLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             H--HHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            1  111111212222222111   2344555655554   333344445556666666666677776543334443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=3.6e-26  Score=222.58  Aligned_cols=340  Identities=27%  Similarity=0.388  Sum_probs=252.6

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHH
Q 011275           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (489)
Q Consensus        56 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~  135 (489)
                      +.+..+..+.+....++..|.+.++++.+.  .+.++..+...++..+++++.|+++||+|||+.+..+.++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSA--SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            344556667777778888899999887654  456889999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011275          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~  215 (489)
                      ..+++++.+++.|++.|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.+++..
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILA  160 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988877766555 799988766


Q ss_pred             HHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011275          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       216 ~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      +..++..+...+.+                                                       +..+.......
T Consensus       161 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~  185 (352)
T cd06174         161 ILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAFF  185 (352)
T ss_pred             HHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHHH
Confidence            55555444333221                                                       00111111111


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhc-CCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCch-hHHHhhHHHHHHHHHHHH
Q 011275          296 LFALQQLSGINAIFYFSSSVFKSA-GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~  370 (489)
                      ..    .........+.+...++. +.+   .+.......++..++.++.+++.||+|||+ .+..+.....++......
T Consensus       186 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         186 LL----SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HH----HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            11    111222223333333332 333   345667778899999999999999999999 877776666665554432


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011275          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  450 (489)
                      ..     +   .+.......+...... ...+....+..|..|++.|++..++.+...+++..+++.+.+.+.+..++..
T Consensus       262 ~~-----~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~  332 (352)
T cd06174         262 AP-----S---LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG  332 (352)
T ss_pred             hc-----c---HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence            21     1   1111122222222222 3356677789999999999999999999999999999999988888888888


Q ss_pred             hHHHHHHHHHHHHHHH
Q 011275          451 LYSIFGTFCLMAVAFV  466 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (489)
                      .+.+.+++.+++.+..
T Consensus       333 ~~~~~~~~~~i~~i~~  348 (352)
T cd06174         333 VFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888887776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=5.8e-26  Score=223.65  Aligned_cols=358  Identities=15%  Similarity=0.118  Sum_probs=228.6

Q ss_pred             HHhhhhccceeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH-hHHHHHHHHHHHH
Q 011275           59 SSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISA  136 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~-~~~~~~i~~~l~~  136 (489)
                      .+++.+...++..+.+|.. .+++|.+.  .+.|++.+.+.++..+.+++.|+++||+|||+.+.. +.++..++.++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARP--AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            3455666667777878764 56788764  456899999999999999999999999999887654 5566667788889


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhh--hhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011275          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~  214 (489)
                      .++|++.+++.|++.|.+.+...+....++.|+.|+++|++.  .+.......+|..++++++..+.+..+ ||+.|++.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~  161 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTA  161 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHH
Confidence            999999999999999988777777777888999888877754  577777788888888888777665555 79999987


Q ss_pred             HHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011275          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++..++..+. .+++||+|+..    +.++.                              ..+.++.+++++++.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~  207 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGA----PGALT------------------------------RLEVRGLLASRDTRLLFVA  207 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCc----ccccC------------------------------cchhhhhhcCcchHHHHHH
Confidence            6655544433 44578876420    00000                              0001112333444433332


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHH
Q 011275          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  370 (489)
                      ..+............+.   ...+..+.+..   .......+...++.++.+++.||+|||+.+..+.....+.......
T Consensus       208 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       208 CTLMWGCNILYIINMPL---LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHHHHHHHHHhhhHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            22221111111111111   22233444433   3333344556677889999999999999876655443332222111


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011275          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  450 (489)
                      ..     +   .+.......+.....+. ..+....+..|..|++ |+++.++.+...+++..+++.+.+.+.+..|+..
T Consensus       285 ~~-----~---~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~  354 (375)
T TIGR00899       285 DN-----S---LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHA  354 (375)
T ss_pred             HH-----H---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            11     1   11111111222222221 2344556778988865 5699999999999999999999888888888888


Q ss_pred             hHHHHHHHHHHHHHHH
Q 011275          451 LYSIFGTFCLMAVAFV  466 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (489)
                      .+.+.+++++++.+..
T Consensus       355 ~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       355 VYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8887777776665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=9.5e-26  Score=224.77  Aligned_cols=373  Identities=17%  Similarity=0.125  Sum_probs=240.9

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchh---HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        55 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      .+.++.++.+...+...+.+|.+.+|+|.+..+.   ..+++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            4455666667777778889999999998875542   2478888999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      ..+.+.+++++.+++.|++.|++.+ ..+....++.|.+|+++|++..+++.....+|..+++.++..+.+..+ ||+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~  175 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF  175 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence            9999999999999999999999865 456667788999999999999999999999998888888777665555 79998


Q ss_pred             HHHHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          212 WVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      ++..+..++..+ ..++.+|.++.   .++ ++ +..             ..              ...+.+++++....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~-------------~~--------------~~~~~~~~~~~~~~  223 (408)
T PRK09874        176 FITASVLFLCFLVTLFCIRENFQP---VSK-KE-MLH-------------MR--------------EVVTSLKNPKLVLS  223 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccc---ccc-hh-hhH-------------HH--------------HHHHhCcCCchHHH
Confidence            876555444333 33445554310   000 00 000             00              01111222222221


Q ss_pred             H-HHHHHHHHHhhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHH
Q 011275          291 F-IGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  366 (489)
                      . ...................|..+..+....   ..+......+++..++.+..+++.||+|||+.+..+.....+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence            1 111111111000001111121111111100   012233345677778888899999999999988776554444333


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011275          367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL  446 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (489)
                      .....     .+ .  +.......+.+.+.+ ...|....+..+..|++.|++..++...+..++..++|.+.+.+.+..
T Consensus       304 ~~~~~-----~~-~--~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~  374 (408)
T PRK09874        304 PMSFV-----QT-P--LQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY  374 (408)
T ss_pred             HHHHh-----cc-H--HHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence            22211     11 1  111111122222221 122334445667789999999999999999999999999888888888


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhc
Q 011275          447 GPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      |+...|.+.+++.+++.++..+..
T Consensus       375 g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        375 GFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877776655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.6e-28  Score=228.20  Aligned_cols=365  Identities=18%  Similarity=0.197  Sum_probs=234.0

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHH
Q 011275           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      +..++++++.+.+...|-..+....+.++..+|++++  ..|++.+.+.+.+.+.+++.|+|+|||.||+++..+..+|+
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s--~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~  109 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDS--ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT  109 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCch--hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence            4456777888888777777677788999999998765  45899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011275          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~  209 (489)
                      ++.++++++..|++++++|.+.|+|.+...++++.+++|.+|..+|+++.++++++..+|..+|.+.|..+.+..+||||
T Consensus       110 ~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  110 LAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHHh-hcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011275          210 CFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~-~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|+..++..++..++. ++++|.++     +..+|...+       .          +..+.........+...+.+.++
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~~-------~----------~~~~~~ts~~kDl~~l~~~~v~v  247 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDGE-------N----------KMVKPFTSVWKDLKVLAKIKVFV  247 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCccc-----ccccccccC-------C----------cCCCCccchHHHHHHHHccCcee
Confidence            9998776666655544 45566432     211111100       0          00000001111122222223333


Q ss_pred             HHHHHHHH--HHHHhhhhHHHHHHhHHHHHHhcCCC--cc-hHHHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHh--
Q 011275          289 VVFIGSTL--FALQQLSGINAIFYFSSSVFKSAGLS--SG-LANVFVGIANLLGSVVAMVLMDKLGRK----ALLQWS--  357 (489)
Q Consensus       289 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~g~~~~g~l~dr~grr----~~~~~~--  357 (489)
                      ...++...  +.+..+....  +-+.+..+...+.+  .+ +.......+..+|.+++|.++||+-|+    ......  
T Consensus       248 ~~sl~~~a~~fv~Gs~sww~--p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~  325 (493)
T KOG1330|consen  248 LSSLGIIAAQFVIGSLSWWA--PAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQL  325 (493)
T ss_pred             eehHHHHHHHHhccccchhh--hhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHH
Confidence            33222222  1112222111  11122222222222  23 344555678888999999999985331    111111  


Q ss_pred             --hHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH
Q 011275          358 --FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  434 (489)
Q Consensus       358 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  434 (489)
                        .+....+..++.....   ......+..+.. +..+... ..+..+ ...+..|+.|+++|+++.++...+..+.+-.
T Consensus       326 ~~~~g~~~s~~~L~~~~~---~~~~s~~~~~il-~~~g~~~~~~~~a~-n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~  400 (493)
T KOG1330|consen  326 SAALGAPLSIPFLFLFPA---FTSSSMIFGLIL-FLVGETISWFNWAT-NNPIFLEVVPPSRRTTAYALDTVFEHIFGDA  400 (493)
T ss_pred             HHhhhhhHHHHHHHHHHh---hhhHHHHHHHHH-HHHHHHHHhccccc-ccceeeEecCcccccHHHHHHHHHHHHhccC
Confidence              1111111111111111   111222222222 2222222 222232 3346789999999999999998886665444


Q ss_pred             -HHHHHHHHHHH
Q 011275          435 -VGLLFLRLLEQ  445 (489)
Q Consensus       435 -~~~~~~~~~~~  445 (489)
                       .|.+.+.+.+.
T Consensus       401 ~~p~ivGilsd~  412 (493)
T KOG1330|consen  401 ASPYIVGILSDK  412 (493)
T ss_pred             CCcceehhHHHH
Confidence             34355555554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=5.8e-26  Score=224.42  Aligned_cols=365  Identities=15%  Similarity=0.082  Sum_probs=230.9

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      .++.++.....+......+.+.+|++.+  +.+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          9 MAAQFFSALADNALLFAAIALLKELHYP--DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            4445555554333445555667787765  34568999999999999999999999999999999999999999988887


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      ++.+.   ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+||.+++.+.+..  |+..+.+...
T Consensus        87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~~~  161 (393)
T PRK11195         87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVCAL  161 (393)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            77664   788999999999999999999999999999999999999999999999999988776532  5666665444


Q ss_pred             HHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011275          217 PAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       217 ~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      ..++..+..+.+||+|...  +++.++..+.             .++..          ...+.+++++..+.......+
T Consensus       162 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~-------------~~~~~----------~~~~~l~~~~~~~~~~~~~~~  216 (393)
T PRK11195        162 IYLLAALFNLFIPRLGARR--PGQSWNPIAL-------------LRDFF----------HACRVLWRDKLGRFSLAGTTL  216 (393)
T ss_pred             HHHHHHHHHhcCCCCcccc--cccCCCHHHH-------------HHHHH----------HHHHHHHhCchhHHHHHHHHH
Confidence            3344444456678875321  1010000000             00000          012334555554443332222


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      ............+.|.+..++......|......+++.+++++..+++.||.++|+.+..+.. .++........     
T Consensus       217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-----  290 (393)
T PRK11195        217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----
Confidence            211111111122233343333333335567777889999999999999999998887666532 22222211111     


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  455 (489)
                       +  ..+..+....+.+.+......|. .....|..|++. ++++.++.+...+++..++..+.. ..+..|....+.+.
T Consensus       291 -~--~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  365 (393)
T PRK11195        291 -H--SLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS-LLVKLGVPVVAVIV  365 (393)
T ss_pred             -h--HHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH-HHHHcCCCHHHHHH
Confidence             1  11111122222223322222333 334567666655 799999999999998888877665 44677777766665


Q ss_pred             HHHHHHHHH
Q 011275          456 GTFCLMAVA  464 (489)
Q Consensus       456 ~~~~~~~~~  464 (489)
                      +...+....
T Consensus       366 ~~~~~~~~~  374 (393)
T PRK11195        366 GFGLLVALA  374 (393)
T ss_pred             HHHHHHHHH
Confidence            554444443

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=223.26  Aligned_cols=335  Identities=20%  Similarity=0.191  Sum_probs=221.1

Q ss_pred             ccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHH
Q 011275           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l  144 (489)
                      ...+++.+.+|.+.+++|.+.+  +.++..+.+.+++.++++++|+++||+|||+++..+.++..++.++++++++++.+
T Consensus        20 ~~~~~~~p~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (401)
T PRK11043         20 LATDMYLPAFKAIQADLQTSAS--AVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQL   97 (401)
T ss_pred             HHHHHHHhhHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            4456677888999999988644  56899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      ++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+..+ ||+.|++..+..++..+.
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043         98 LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Confidence            9999999999887777777889999999999988888888888888888888777666666 799998766666555555


Q ss_pred             hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011275          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (489)
Q Consensus       225 ~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (489)
                      .++++|+++    +++.++.                              ..++++.++++.++...........    .
T Consensus       177 ~~~~~~~~~----~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~  218 (401)
T PRK11043        177 TLRLKPSKK----ARKQSQD------------------------------ALTFKQLLKSKTYLGNVLIFAACSA----A  218 (401)
T ss_pred             HHHcCCCCC----ccccchH------------------------------HHHHHHHHcChhHHHHHHHHHHHHH----H
Confidence            555555532    0000000                              0112333433433322221111111    1


Q ss_pred             HHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchh
Q 011275          305 INAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  381 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      ......+.+.++++.+.+.   +.......++..+|.++.+++.||+++|+.........+++........... .... 
T Consensus       219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  296 (401)
T PRK11043        219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS-HPSL-  296 (401)
T ss_pred             HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcH-
Confidence            1112223344445555553   3344555677888899999999999998876555444444333222211111 1111 


Q ss_pred             hHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          382 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (489)
                       +..+..........+ ...|.......|..| +.|+++.|+.+.++..++..++.+.+.+.+.
T Consensus       297 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        297 -VPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             -HHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence             111111111122211 123333445556666 5799999999999888888888887776553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=9.8e-27  Score=226.86  Aligned_cols=342  Identities=22%  Similarity=0.354  Sum_probs=223.9

Q ss_pred             HHHhhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      ++.++...+.+...+.+| .+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+..
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPS--QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSH--CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            444566666667788888 88889887755  458999999999999999999999999999999999999999977777


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      +++|++.+++.|++.|++.+...+....++.|++|+++|++..++......+|..++++++..+.+..+ ||+.|++.++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~  159 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAI  159 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccc
Confidence            768888999999999999999999999999999999999999999999999999999999888776656 7999988766


Q ss_pred             HHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcch-hHHHhhhccchhHHHHHH
Q 011275          217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIGS  294 (489)
Q Consensus       217 ~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  294 (489)
                      ..++..++ ..+.+|+|+....+++.++.                 .   +    +..+.. .++...+++..+......
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------~---~----~~~~~~~~~~~~~~~~~~~~~~~~~  215 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-----------------S---K----KPKPLKPGFKSLFKNPVLWILLIAF  215 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-----------------c---c----cccccccccccccccchhhhhhhhh
Confidence            66665443 24455443210000000000                 0   0    000001 133444444444222222


Q ss_pred             HHHHHHhhhhHHHHHHhHHHH-HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHH
Q 011275          295 TLFALQQLSGINAIFYFSSSV-FKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      .+.....    .....+.+.+ .+..+.+    .+.......+...++.++.+++.||+++|+..........+......
T Consensus       216 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  216 FLFFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            2221111    1122223322 2233333    23345666677778899999999999998776555444444333322


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011275          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                      .....   . . .........+.+++... ..+....+..|.+|++.|+++.|+.+.+.++++.++|
T Consensus       292 ~~~~~---~-~-~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  292 LLPFS---S-S-PVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CSHHH---C-H-HHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---h-h-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            11110   0 1 11111122222232221 2456667889999999999999999999999888776

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=2.6e-26  Score=231.16  Aligned_cols=372  Identities=16%  Similarity=0.153  Sum_probs=226.5

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHH-
Q 011275           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL-  146 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~-  146 (489)
                      ..++..+|.+.+++|.+.+  +.++..+.+.++..++.++.|+++||+|||++++.+.+++++++++++++++++.+++ 
T Consensus        36 ~~~~~~~~~i~~~~g~s~~--~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYS--ETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLT  113 (455)
T ss_pred             cchhhhHHHHHHHhCcchh--HHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3356678899999998755  4578899999999999999999999999999999999999999999999999998865 


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (489)
                      .|+++|++.|...+....++.|++| ++|+++.++.+.+..+|..++++++..+.+..+ ||+.|++.++..++..+..+
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~  191 (455)
T TIGR00892       114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGA  191 (455)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            5799999998766666778889986 789999999999999998888877766655556 79999987655544433332


Q ss_pred             c-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011275          227 F-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       227 ~-~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      + .++.+..  .+.+ ++.+   ++.......++    .......++..+....+.++++.++.......+.....    
T Consensus       192 ~~~~~~~~~--~~~~-~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  257 (455)
T TIGR00892       192 LMRPVGPSQ--RVSK-SKSK---EGLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGF----  257 (455)
T ss_pred             HhCCCCccc--cccc-cccc---ccCCCCCcccc----ccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHc----
Confidence            2 2322110  0000 0000   00000000000    00000000000000123555555554443322222111    


Q ss_pred             HHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011275          306 NAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .....+.+.+.++.+.+.   +......+++.+++.++.+++.||.  ++|+...........+...+....    ... 
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~-  332 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGD-  332 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hch-
Confidence            112223333444455543   3455566778888888999999984  333333222211111111111110    011 


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHH
Q 011275          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFC  459 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  459 (489)
                       .+..+...+++++.+. ...+....+..|.+|++.+++++|+.+.+..++++++|.+.+.+.+..+ +...|.+.+++.
T Consensus       333 -~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~  410 (455)
T TIGR00892       333 -YTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV  410 (455)
T ss_pred             -HHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence             1111112223333222 2234455678899999999999999999999999999998888877764 666777766665


Q ss_pred             HHHHH
Q 011275          460 LMAVA  464 (489)
Q Consensus       460 ~~~~~  464 (489)
                      +++.+
T Consensus       411 li~~~  415 (455)
T TIGR00892       411 VSAGL  415 (455)
T ss_pred             HHHHH
Confidence            55544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=3.3e-25  Score=224.67  Aligned_cols=370  Identities=16%  Similarity=0.155  Sum_probs=236.1

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhhHH-HHHhHHHHH
Q 011275           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMI  129 (489)
Q Consensus        56 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~-~~~~~~~~~  129 (489)
                      +.+..+..|......+..+|...++.|.+.++.  +.. +.....+ ++.+++|+++||+     |||+. +..+.++.+
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            333445666677777888898988888765533  333 3333333 6889999999999     99986 557777777


Q ss_pred             HHHHHHHhc---chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc-CCc
Q 011275          130 IGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAG  205 (489)
Q Consensus       130 i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~  205 (489)
                      ++..+.++.   .+++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..+
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            777777665   4688888999999999998888899999999999999999999999999998888887777665 345


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011275          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (489)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                       ||..|++.++..++..+..++.||+++.   +++.++.+             +             ....++++.++++
T Consensus       173 -Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~~~-------------~-------------~~~~~l~~~~~~~  222 (491)
T PRK11010        173 -WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKTLE-------------Q-------------AVVAPLRDFFGRN  222 (491)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccchh-------------h-------------hHHHHHHHHHcCc
Confidence             7999998766666555555567886531   00000000             0             0001233445444


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHH-HHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHH
Q 011275          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  361 (489)
                      +.+.......++......   ...+..+...+..|.+..   ... ....++.++|.+++|+++||+|+|+.+..+.+..
T Consensus       223 ~~~~~ll~~~l~~~~~~~---~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        223 NAWLILLLIVLYKLGDAF---AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            444333322222211111   111222222344565543   333 2334688899999999999999988766554444


Q ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011275          362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      ++...........  .... ..+ ....++....+.++. +....+..++.|++.+++..|+.+++..++..+++.+.+.
T Consensus       300 ~l~~l~~~~l~~~--~~~~-~~l-~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~  374 (491)
T PRK11010        300 GVSNAGYWLLSIT--DKNL-YSM-GAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW  374 (491)
T ss_pred             HHHHHHHHHHHhc--cccH-HHH-HHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433222211111  1111 111 111112111122222 2235577888999999999999999999998888888888


Q ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHH
Q 011275          442 LLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       442 ~~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +.+..|+...|.+.+++++.+.+...
T Consensus       375 l~~~~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        375 FVEAHGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            88988988888877777777655554

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=1.5e-24  Score=215.44  Aligned_cols=356  Identities=13%  Similarity=0.087  Sum_probs=221.0

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH---h-cchHHHH
Q 011275           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T-TRNLIGM  144 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~---~-~~~~~~l  144 (489)
                      .....++.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.+++++++.++.   . ..+++.+
T Consensus        31 ~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  108 (402)
T TIGR00897        31 LEQGWLSPFLKALGLSPQ--QSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI  108 (402)
T ss_pred             hHHHhHHHHHHHhCCCHH--HhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence            344456667788887644  568999999999999999999999999999999999999988876653   3 3578888


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHHHHHHH-HH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LC  222 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~  222 (489)
                      ++.|+++|++.+...+....++.|++|+++|++++++++.+..+|. ..+++++..+.+..+| +..+|.......+ ..
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~  187 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE-MNTLWSALAFVLTGGV  187 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHH
Confidence            8999999999888777777788999999999999999999999996 5778777665555553 3333322111111 11


Q ss_pred             HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011275          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +..++.++.++       +++.++       +++.    ++          ....+++++++++++.......+...   
T Consensus       188 ~~~~~~~~~~~-------~~~~~~-------~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (402)
T TIGR00897       188 IALFSNKDIFT-------PQHMQT-------REKF----SE----------LGKAATILFTNPNVLLGGMVRIINTI---  236 (402)
T ss_pred             HHHhccCCCCC-------cccccC-------Ccch----hh----------HHHHHHHHHcChhHHHHHHHHHHHHH---
Confidence            22222333210       000000       0000    00          00113345555555544333222211   


Q ss_pred             hhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHH-HhhHHHHHHHHHHHHHhhccCCC
Q 011275          303 SGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~  378 (489)
                       .......+.|.+.++.+.+..   .......++..++++..|+++||++||+... .+.+...++........... .+
T Consensus       237 -~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~  314 (402)
T TIGR00897       237 -GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF-GH  314 (402)
T ss_pred             -HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc-CC
Confidence             222333455555566665543   3344566888999999999999999888653 22222333222222211111 11


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 011275          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  458 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  458 (489)
                      ..  +......+.++.... +..+.. ....|..| +.|+++.|+.+...++++.++|.+.+.+.+..|+...+.+.+++
T Consensus       315 ~~--~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       315 SF--AVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             cH--HHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            11  111111122222221 122332 34567655 68999999999999999999999999998888887777777777


Q ss_pred             HHHHHHH
Q 011275          459 CLMAVAF  465 (489)
Q Consensus       459 ~~~~~~~  465 (489)
                      .+++.+.
T Consensus       390 ~~i~~~~  396 (402)
T TIGR00897       390 YVVSAFL  396 (402)
T ss_pred             HHHHHHH
Confidence            6665443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.3e-25  Score=219.52  Aligned_cols=326  Identities=17%  Similarity=0.257  Sum_probs=211.9

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHH
Q 011275           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      ..+...+.+|.+.+++|++.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++.+++..++..+++++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAG--SVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            345567889999999988644  568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH-HH
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC-LA  224 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~  224 (489)
                      +.|+++|++.+...+....++.|++|+++|++..++......+|..++++++..+.+..+ ||+.|++..+..++.. +.
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888999999999999999999999999999999988877666555 7999887655544433 33


Q ss_pred             hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011275          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (489)
Q Consensus       225 ~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (489)
                      .++.||+++    +++.++           .+.++              ...++++.+++++.........+.    +.+
T Consensus       163 ~~~~~~~~~----~~~~~~-----------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~  209 (377)
T PRK11102        163 FFFIPETLP----KERRQP-----------FHLRT--------------TIRNFASLFRHKRVLGYMLASGFS----FAG  209 (377)
T ss_pred             HHhCCccCc----ccccCC-----------CChHH--------------HHHHHHHHHcChHHHHHHHHHHHH----HHH
Confidence            455676532    000000           00000              001223344444433322221111    111


Q ss_pred             HHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011275          305 INAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       305 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .+....+.+..+ +..+.+   .+.......++..++.++.+++.||+|||+.+..+.....+...........  ... 
T Consensus       210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-  286 (377)
T PRK11102        210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--DLG-  286 (377)
T ss_pred             HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH--hhh-
Confidence            112222222222 333443   3455566778888999999999999999998877765444333222221111  011 


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHH
Q 011275          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF  433 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  433 (489)
                       .+........+...... ..+....+..|..| +.|+++.++.+......+.
T Consensus       287 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~  336 (377)
T PRK11102        287 -FWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA  336 (377)
T ss_pred             -HHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH
Confidence             11111111122111111 12222335667777 8899999998776554333

>PRK10133 L-fucose transporter; Provisional

Probab=99.95  E-value=4e-25  Score=220.94  Aligned_cols=363  Identities=12%  Similarity=0.093  Sum_probs=228.3

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +.+++..++.+.+....+..+|.+.+++|.+.  .+.++..+.+.+|+.+++++.|+++||+|||+++..+.++++++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~--~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTN--FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34444446666677778888999999998864  4668999999999999999999999999999999999999999998


Q ss_pred             HH---HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc--c------
Q 011275          134 IS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--E------  202 (489)
Q Consensus       134 l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~--~------  202 (489)
                      ++   +.+++++.++++|+++|+|.|...+....++.|+.|+++|++.+++.+..+.+|..++++++..+.  .      
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~  186 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ  186 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence            85   568999999999999999999999999999999888887877888889988899888887764321  0      


Q ss_pred             ----------CCc-------hhHHHHHH-HHHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011275          203 ----------IAG-------WWRICFWV-SIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       203 ----------~~~-------~wr~~f~~-~~~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  263 (489)
                                ..+       .||++|+. ..+..++..+. ....||.+.    +++.+                     
T Consensus       187 ~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~---------------------  241 (438)
T PRK10133        187 DVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSD---------------------  241 (438)
T ss_pred             hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccccc---------------------
Confidence                      011       15666653 22222222222 222344210    00000                     


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HH-hcCCCc---chHHHHHHHHHHHHH
Q 011275          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FK-SAGLSS---GLANVFVGIANLLGS  338 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~i~~~~g~  338 (489)
                           ++......+.+++++++.++...+..+++......    ...|.+.. ++ ..+.+.   +.......++..+|.
T Consensus       242 -----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~  312 (438)
T PRK10133        242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA----CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_pred             -----ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 00000011234556666655443333332221111    11222222 23 345553   456677888999999


Q ss_pred             HHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011275          339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA  418 (489)
Q Consensus       339 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  418 (489)
                      ++++++.||+|+|+++..+.....+.+.+....     +....    +..+.+.+++.+ ...|.......|.+|+ ..+
T Consensus       313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~l~glg~~-~i~P~~~s~a~~~~~~-~~~  381 (438)
T PRK10133        313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHVG----LIALTLCSAFMS-IQYPTIFSLGIKNLGQ-DTK  381 (438)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHH----HHHHHHHHHHHH-HHHHHHHHHHHcccch-hhc
Confidence            999999999999998777655444333322211     11111    111122222222 1234555567777765 466


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHH
Q 011275          419 KAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      ++.++.. +..+++.++|.+.+.+.+..| ....|.+..++.+...+
T Consensus       382 ~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             cchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            7777765 455677888888887777776 45666544444443333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=2.1e-25  Score=218.93  Aligned_cols=332  Identities=18%  Similarity=0.173  Sum_probs=203.9

Q ss_pred             cceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc-hHHH
Q 011275           66 HLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIG  143 (489)
Q Consensus        66 ~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~~  143 (489)
                      ......+..|. +.+++|++.+  +.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.+++++++ +++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~   93 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTA--QLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV   93 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHH--HhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            34446777785 8889988754  568999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc----------CCchhHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----------IAGWWRICFWV  213 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----------~~~~wr~~f~~  213 (489)
                      +++.|+++|++.+. ......+++|++|+++|++..+++.....+|..+++.++..+..          ..+ ||+.|+.
T Consensus        94 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~~~  171 (366)
T TIGR00886        94 LLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAFVI  171 (366)
T ss_pred             HHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhHH
Confidence            99999999998654 45567889999999999999999886666665555544433221          123 7988843


Q ss_pred             --HHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          214 --SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       214 --~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                        ..+..+...+...+.+|+|+.     +.++.+...++    ..           ...++.......+.+++++.+...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T TIGR00886       172 VPAGILLLPALLIFFVGADTPPG-----KPATGKLSFKG----AR-----------WSVGTGALGDQLKVFRDRHTWILA  231 (366)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcc-----cccchhccccc----cc-----------ccccchhHHHHHHHHhccchhhHH
Confidence              233333333444556776531     11110000000    00           000000011334455556555443


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      ....+......    ....+.+.+++ ..+.+   .+.......+..+++.++++++.||+|||+....+......+..+
T Consensus       232 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~  307 (366)
T TIGR00886       232 LLYSVTFGSFL----GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL  307 (366)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHH
Confidence            33222221111    12222232332 23433   344455566788899999999999999988776665544444333


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                      +.....   .. ......+............+.+ ..+...+|+.| +.|+++.|+.+++++++
T Consensus       308 ~~~~~~---~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       308 VVLGLV---SP-LSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHhcCC---Cc-chHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            322111   10 0111112222222233333333 34557788887 69999999998887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=1.4e-24  Score=215.15  Aligned_cols=334  Identities=16%  Similarity=0.165  Sum_probs=212.7

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchH
Q 011275           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL  141 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~  141 (489)
                      ......+...+.+|.+.+++|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+++..++++
T Consensus        19 ~~~~~~~~~~p~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T PRK11652         19 VGQMAQTIYVPAIADMARDLNVREG--AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL   96 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            3334445667788999999988754  56889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011275          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       142 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~  221 (489)
                      +.+++.|++.|++.+...+....+..|.+++++|++..++++.+..+|..++++++..+.+..+ ||+.|++..+..++.
T Consensus        97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~~  175 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            9999999999999888777777888999999999999999999999999888888877666556 799998765544433


Q ss_pred             -HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011275          222 -CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       222 -~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                       .+..++.||+++.   +++.++    .                          ...+++.+++++++........... 
T Consensus       176 ~~~~~~~~~~~~~~---~~~~~~----~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-  221 (394)
T PRK11652        176 TFSMARWMPETRPA---DARRTR----V--------------------------LASYRTLLSNRRFNCYLLMLIGTLA-  221 (394)
T ss_pred             HHHHHHhCCccCcc---ccchhH----H--------------------------HHHHHHHHcChHHHHHHHHHHHHHH-
Confidence             3344567776421   000000    0                          0112233344444433222211111 


Q ss_pred             hhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          301 QLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                         +......+.+..+++ .+.+.   +.......++.++++.+.+++.||++++...  ......+............ 
T Consensus       222 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-  295 (394)
T PRK11652        222 ---GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFG-  295 (394)
T ss_pred             ---HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc-
Confidence               111111122222322 44443   3444455677777888888888888733322  2222222212111111100 


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      ...  .+......+.+..+... ..|....+..|.+| +.++++.++.+....+++.+++.+...+
T Consensus       296 ~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        296 VMN--VWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             ccc--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            011  11111222222222222 23445556778887 6789999999998888888888766544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.1e-24  Score=199.64  Aligned_cols=357  Identities=19%  Similarity=0.207  Sum_probs=234.4

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHH---H
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI---G  143 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~---~  143 (489)
                      ..+.++..+.+.+|+++|.+  |.+++.+.-.+...+.-++.|++.||||.|++...+.++..+-++..+++.+.+   +
T Consensus        30 W~l~s~l~~~i~~~~~LS~~--q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~  107 (417)
T COG2223          30 WTLFSPLGVFIKSDFGLSEG--QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ  107 (417)
T ss_pred             HHHHHHHHhhhccccCCCHH--HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            34455556667789888755  568999999888899999999999999999999999999999999888876555   9


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc--hhHHHHHHHHHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRICFWVSIVPAAIL  221 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~wr~~f~~~~~~~~~~  221 (489)
                      +++.+++.|++ |+..++...++++++||+++|.+++++. ..++|..+..+++..+....+  +||..-.+..++.++.
T Consensus       108 ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~  185 (417)
T COG2223         108 LLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA  185 (417)
T ss_pred             HHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999996 5677788889999999999999999998 666665444444443333344  3888777654444443


Q ss_pred             HH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011275          222 CL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       222 ~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .+ .++...+.|......++                                ..+..++...++++.|.+.+...    .
T Consensus       186 ~v~~~~~~~d~p~~r~~~~~--------------------------------~~~~~~~~v~~~~~~W~lsllY~----~  229 (417)
T COG2223         186 AVLAWLGMNDVPEHRASVKP--------------------------------QLPAQLKAVFSNKDTWLLSLLYF----A  229 (417)
T ss_pred             HHHHHHHhCCChhhhccccc--------------------------------cchhHHHHHhcCcchHHHHHHHH----H
Confidence            33 33333333321000000                                00022344555566665543322    2


Q ss_pred             hhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          301 QLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      ++.++..+..+.+.+++ +.+.+   .+...........+..+++|+++||+|.+|+....+..++++..+.....+...
T Consensus       230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~  309 (417)
T COG2223         230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG  309 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc
Confidence            33333344444444332 34443   344444444555566778999999999999998888888877766554332211


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHH
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~  455 (489)
                      . .......+...+........|.+.+ +-+++.++| +.-+...|++..++.++++..|..+...++..| +...|.++
T Consensus       310 ~-~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~  386 (417)
T COG2223         310 H-GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLL  386 (417)
T ss_pred             c-CcchHHHHHHHHHHHHHhccCcchh-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHH
Confidence            1 1112222222233333444444444 446788887 478889999999999999999999888888877 45667777


Q ss_pred             HHHHHHHHHHH
Q 011275          456 GTFCLMAVAFV  466 (489)
Q Consensus       456 ~~~~~~~~~~~  466 (489)
                      ..+++++.++.
T Consensus       387 ~~~~~~a~v~~  397 (417)
T COG2223         387 LAFYLVALVLT  397 (417)
T ss_pred             HHHHHHHHHHH
Confidence            77766666544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=4.2e-24  Score=240.02  Aligned_cols=330  Identities=13%  Similarity=0.008  Sum_probs=211.3

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH---HHhcchHHHHHHHHHHH
Q 011275           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVV  151 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~  151 (489)
                      +.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++   +..+.+++.++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  113 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL  113 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            444556666555556789999999999999999999999999999999888766555544   34567899999999999


Q ss_pred             hhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--------CchhHHHHHH-HHHHHHHHH
Q 011275          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWV-SIVPAAILC  222 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~wr~~f~~-~~~~~~~~~  222 (489)
                      |++.+...+...+++.|++|+++|+++++++..+..+|.++|++++..+.+.        .+||++.+.+ .....++.+
T Consensus       114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1146)
T PRK08633        114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL  193 (1146)
T ss_pred             HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988776544        2344444433 333333334


Q ss_pred             HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011275          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +..+.+||+|.....+.  ++ ++       ....+    +          ....+..+++++.++...+...++.....
T Consensus       194 ~~~~~~~~~~~~~~~~~--~~-~~-------~~~~~----~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        194 IFAYRLPKVPAAAPEVF--DK-KK-------YLFPK----L----------LWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             HHHhcCcCCCCCCcccc--cc-cc-------cccHH----H----------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            44556788764211000  00 00       00000    0          00123344555555544443333222211


Q ss_pred             hhHHHHHHhHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011275          303 SGINAIFYFSSSVFKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (489)
                      ......+.|   .....+.+    .++.....+++.+++.++.+++.||+++++.+.++.++.+++..++....      
T Consensus       250 ~~~~~~~~~---~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------  320 (1146)
T PRK08633        250 LAQANFPAY---AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP------  320 (1146)
T ss_pred             HHHHhhHHH---HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh------
Confidence            111122222   22223333    34566677788899999999999999998877766665555444333221      


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011275          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  440 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  440 (489)
                        ..+..+...++++++.+.. .+....+..|..|++.|++++|+.+.+.+++..+++.+..
T Consensus       321 --~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        321 --SLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             --hHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence              1111122222222222222 2334567889999999999999999999888766655433

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=9.7e-24  Score=206.20  Aligned_cols=328  Identities=16%  Similarity=0.166  Sum_probs=214.4

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHH
Q 011275           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      ....+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+++ .+++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFS--VAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            4567889999999998754  56899999999999999999999999999999999999888888877 78899999999


Q ss_pred             HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhh
Q 011275          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~  226 (489)
                      |++.|++.+...+....++.|++| ++|+++.+.++....+|..+++.++..+.+..++ ||+.|....+..++.  ...
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~--~~~  170 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA--LLA  170 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHH
Confidence            999999999888888888899886 5899999999999999988888777666544433 898887644333222  222


Q ss_pred             cccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH
Q 011275          227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN  306 (489)
Q Consensus       227 ~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (489)
                      +.||+++      +.++           +             +.  ......++.++++..+.......+...    ...
T Consensus       171 ~~~~~~~------~~~~-----------~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  214 (355)
T TIGR00896       171 WIPQVRR------RVAA-----------N-------------QT--TTRLTPVRIWRSPLAWQVTVFFGLQSG----LYY  214 (355)
T ss_pred             Hhhhhcc------ccCC-----------C-------------CC--CCCCCCchhhcCHhHHHHHHHHHHHHH----HHH
Confidence            3344321      0000           0             00  000112234444444333222111111    112


Q ss_pred             HHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcC-CchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011275          307 AIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLG-RKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      ....+.+.++++.+.+.   +.......++.+++.++.|++.||++ ||+.+..+....+++.........     .. .
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~  288 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HG-L  288 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hH-H
Confidence            22334455555555543   34566677899999999999999994 555555555555554433332211     11 1


Q ss_pred             HHHHHHHHHHHHHHhcCcccccccccc-ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          383 YLSVGGMLMFVLTFALGAGPVPSLLLP-EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ..   ...++..+.. ...|....... +..+++.+++..++.+.++++++.++|.+.+.+.+..|
T Consensus       289 ~~---~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       289 WA---WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HH---HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11   1112222211 11233223333 44456778999999999999999999999888888765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.6e-24  Score=214.77  Aligned_cols=269  Identities=21%  Similarity=0.265  Sum_probs=192.5

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHH
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~  146 (489)
                      .++.++.+..+.+|.+...+  +.+.+.+++++||++|.++++.|.||++-.+.+..+.+++++.++++....|++.+++
T Consensus        62 ~si~~a~l~g~~edl~~~~~--~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ia  139 (495)
T KOG2533|consen   62 SSIVNASLSGLKEDLKLVGN--QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIA  139 (495)
T ss_pred             hcchhHHHcCCccccchhhh--hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34556666566688777655  4578999999999999999999999999999999999999999988888999999999


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc------ccCCchhHHHHHHHHHHHHH
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV------KEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~------~~~~~~wr~~f~~~~~~~~~  220 (489)
                      .|++.|+..+..+|....+++-|+.++|||+.++++..+..+|.++|.++...+      ....+ |||.|++.++..++
T Consensus       140 lr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~G~i~~~  218 (495)
T KOG2533|consen  140 LRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIEGVITLV  218 (495)
T ss_pred             HHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888876653      22334 89999986555555


Q ss_pred             HH-HHhhcccCChH--HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHH
Q 011275          221 LC-LAMVFCAESPH--WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLF  297 (489)
Q Consensus       221 ~~-~~~~~~pEsp~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      .. +..+++|+.|.  |...   ++|.+-..++.+          +..+.+..++.+...+.+.++.+..+...+..++.
T Consensus       219 ~gi~~f~~lp~~P~~~~fl~---~~ek~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~  285 (495)
T KOG2533|consen  219 LGIVVFFFLPDNPSKAWFLT---DEEKELVVERLR----------ESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFL  285 (495)
T ss_pred             HHheEEEEecCChhhccccc---hHHHHHHHHHHH----------hccCCCcccccCHHHHHHHHhchhHHHHHHHHHHH
Confidence            44 45667899986  2211   111110011110          00011111113445567777777766655433332


Q ss_pred             HHHhhhhHHHHHHhHHHHHHh-cCC---CcchHHHHHHHHHHHHHHHHHHHHhh----cCCchhHH
Q 011275          298 ALQQLSGINAIFYFSSSVFKS-AGL---SSGLANVFVGIANLLGSVVAMVLMDK----LGRKALLQ  355 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~~  355 (489)
                      ..    ..+...+|.|.+++. .+.   +++...++..++.+++.+++|+++||    ..+|....
T Consensus       286 ~l----v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~  347 (495)
T KOG2533|consen  286 KL----VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFI  347 (495)
T ss_pred             hh----ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            22    233455666666665 223   34567888999999999999999999    44554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=1.5e-23  Score=207.81  Aligned_cols=358  Identities=14%  Similarity=0.118  Sum_probs=232.6

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +++++..+..|+..++.++.+|.+++++|.+.  .+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++..
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~--~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQAFTLTA--FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            34555666778777888899999999999864  4678999999999999999999999999999999999999999988


Q ss_pred             HHHh---cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-------
Q 011275          134 ISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------  203 (489)
Q Consensus       134 l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-------  203 (489)
                      +...   .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+....+|..+++.++..+...       
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            8543   468999999999999999999999999999999999999999999999999988888776544211       


Q ss_pred             ------------------CchhHHHHHHHHHHHHHHHHHhhc--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011275          204 ------------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       204 ------------------~~~wr~~f~~~~~~~~~~~~~~~~--~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  263 (489)
                                        ...||++|++.++..++..+...+  .||.++       .++ +                  
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~-~------------------  217 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA-K------------------  217 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc-c------------------
Confidence                              012899998755544443333322  333210       000 0                  


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCCcch---HHHHHHHHHHHHH
Q 011275          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLSSGL---ANVFVGIANLLGS  338 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~g~  338 (489)
                           +  .......++.+++++++......+++.......    ..+.+...+..  +.+.+.   .......+..+|.
T Consensus       218 -----~--~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~----~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR  286 (410)
T TIGR00885       218 -----Q--ISFSASLSRLARIRHYREGVIAQFFYVGVQIMC----WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR  286 (410)
T ss_pred             -----c--ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 0  000011234455566555444444433332221    12223322222  222222   2223335677999


Q ss_pred             HHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011275          339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA  418 (489)
Q Consensus       339 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  418 (489)
                      ++++++.||+++|+++.+......+...+....     ++....+.    +.....+.+ ...|..+....+..+++.+.
T Consensus       287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~~~~~~~~----l~~~glf~s-~~fp~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----GGHVGLYC----LTLCSAFMS-LMFPTIYGIALKGLGQDTKY  356 (410)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHHHHH----HHHHHHHHH-HHHHHHHHHHHhhhhhhhhh
Confidence            999999999999998766655555444333221     11111111    111111111 22356666778888877776


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHHHH
Q 011275          419 KAMAVCMSVHWVINFFVGLLFLRLLEQL------GPQLLYSIFGTFCLMA  462 (489)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~  462 (489)
                      .+.+++.++  +|+.+.|.+.+.+.|..      +....|.+...+.+..
T Consensus       357 ~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       357 GAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             hHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            667766655  88999999998888843      3455665544443333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=2.2e-23  Score=206.49  Aligned_cols=356  Identities=14%  Similarity=0.058  Sum_probs=221.5

Q ss_pred             HHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh
Q 011275           59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~  137 (489)
                      .+++.......+.+.++. +.+++|.+  ..+.|+..+.+.++..+.+++.|+++||+|||+++..+.++..++.+++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         18 DNMLVVLGFFVVFPLISIRFVDQLGWA--AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555544 46777776  446688999988898899999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011275          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       138 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~  217 (489)
                      +++++.+++.|+++|++.+...+....++.|++|+++|+++.++......+|..+|++++..+. ..+ ||+.|++..+.
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~  173 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVL  173 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHH
Confidence            9999999999999999988888888889999999999999999999999999999998887766 344 79999886555


Q ss_pred             HHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011275          218 AAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      .++..+. .++.||.+.    +++.++                              ....+++.++++.+.........
T Consensus       174 ~~~~~i~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~  219 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKL----STVRTP------------------------------VREGMTRVLRDKRFVTYVLTLTG  219 (400)
T ss_pred             HHHHHHHHHHhCCcccc----cccchh------------------------------hHHHHHHHHcCchHHHHHHHHHH
Confidence            4443322 334454210    000000                              00112334444444332222221


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHh-hcCCchhHHHhhHHHHHHHHHHHHHh
Q 011275          297 FALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      +.....    ....+.|...++.+.+   .+......+++...+....+++.| |++.++.+..+....+++........
T Consensus       220 ~~~~~~----~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        220 YYMLAV----QVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             HHHHHH----HHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            111111    1112233333332222   233333444444444444455554 56656555555544444433322211


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C
Q 011275          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG----P  448 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~  448 (489)
                           . . . ..+....++..+.. ...|....+..|..|++.|++++|+.+....++..++|.+.+.+.+..+    .
T Consensus       296 -----~-~-~-~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~  366 (400)
T PRK11646        296 -----N-L-Q-QLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQP  366 (400)
T ss_pred             -----h-H-H-HHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCc
Confidence                 1 1 1 11111122222222 1234455678899999999999999999999999999998888877642    2


Q ss_pred             chhHHHHHHHHHHHHHH
Q 011275          449 QLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~  465 (489)
                      ...+...+.++++..+.
T Consensus       367 ~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        367 ELPWMMLGIIGLITLLA  383 (400)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            34554445555554443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.9e-24  Score=209.82  Aligned_cols=356  Identities=17%  Similarity=0.208  Sum_probs=239.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhhccccccccc
Q 011275           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAA  163 (489)
Q Consensus        86 ~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~  163 (489)
                      ++.+.+++.+.+++|+.+++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|++||++.|..++...
T Consensus        71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~  150 (466)
T KOG2532|consen   71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIG  150 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhh
Confidence            455679999999999999999999999999999999999999999999987765  445678999999999999999999


Q ss_pred             chhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHHHHHHHHHHHHHHHHh-hcccCChHHHHhcCCH
Q 011275          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRT  241 (489)
Q Consensus       164 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~-~~~pEsp~~l~~~~~~  241 (489)
                      .+.+.|+|++||++..++...+..+|.+++.++++.+.+. .| |+.+|++.++.+++..+++ ++..|+|.-   +.+.
T Consensus       151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~i  226 (466)
T KOG2532|consen  151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNI  226 (466)
T ss_pred             ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCC
Confidence            9999999999999999999999999998888777777666 55 7999999877777766555 445666642   1111


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC
Q 011275          242 AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL  321 (489)
Q Consensus       242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (489)
                      .  +++++++....          ..+..+.....+++++++++..+..+++.+...........+.+.|..++++..-.
T Consensus       227 s--~~El~~I~~~k----------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~  294 (466)
T KOG2532|consen  227 S--EKELKYIEKGK----------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVR  294 (466)
T ss_pred             C--HHHHHHHHhcc----------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChh
Confidence            1  11222221110          01111111467899999999988887776655443333333333333333333333


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhcCCc--------hhH-HHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHH
Q 011275          322 SSGLANVFVGIANLLGSVVAMVLMDKLGRK--------ALL-QWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMF  392 (489)
Q Consensus       322 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (489)
                      +.|.......+..++..+++|.++||+-+|        +.. .+++.+.++.++.+...     ..... +..+..+.+ 
T Consensus       295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-----~~~~~-~~a~~~l~~-  367 (466)
T KOG2532|consen  295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-----SDEHR-LLAVILLTI-  367 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----CCCcc-hHHHHHHHH-
Confidence            467888888899999999999999998663        111 12233333322222211     11111 111111111 


Q ss_pred             HHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHH
Q 011275          393 VLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---QLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       393 ~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ..++ .|.. ....+..-.- -+++.+..+|+.+.+..+.+++.|.+.+.+..   .-.|...|.+.+++.++..++.
T Consensus       368 ~~~~-~g~~-~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  368 AIGL-SGFN-ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHH-cccc-hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            1111 1111 1111222222 46899999999999999999999998877662   2346778888888877776443

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=1.3e-23  Score=207.85  Aligned_cols=369  Identities=13%  Similarity=0.092  Sum_probs=235.7

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      .+.++.....+...+.+|. +.+++|++.+  +.|+..+.+.++..+++++.|+++||+|||+++..+.++..++.++.+
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVD--LIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            3444444455555666654 4567787644  568999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      ++++++.+++.|++.|.+.+...+....+..|..|+++|++..++......+|..++++++..+.. .+ ||..|++..+
T Consensus        92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~  169 (395)
T PRK10054         92 LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAI  169 (395)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHH
Confidence            999999999999999988777777788889999999999999999999999999989888877654 34 7989987655


Q ss_pred             HHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011275          217 PAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+ ..+++||++.    +++ ++.++                            ..+.++.+++++++.......
T Consensus       170 ~~~i~~i~~~~~~~~~~~----~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~  216 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEK----AIA-TETGS----------------------------VWSPSVLLQDKALLWFTCSGF  216 (395)
T ss_pred             HHHHHHHHHHHHHhcccc----ccc-cchhh----------------------------hhhhhhhccCceehHHHHHHH
Confidence            5444433 3333454421    000 00000                            001123445555554443332


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011275          296 LFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      +..............|.+.. ...+.+.   +.......+...+.....+++.||.++|+.+..+.....++........
T Consensus       217 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  295 (395)
T PRK10054        217 LASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG  295 (395)
T ss_pred             HHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc
Confidence            22211111111112222221 1122222   2233333344445556778999999999987777655555443332211


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Q 011275          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  452 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  452 (489)
                           +..  +........+..+.. ...|....+..+..|++.|++..+..+ .++++..++|.+.+.+.|..|....|
T Consensus       296 -----~~~--~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~  366 (395)
T PRK10054        296 -----NSL--LLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLF  366 (395)
T ss_pred             -----hHH--HHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHH
Confidence                 111  111111222222221 223455567888999999999998754 67789999999999999999888788


Q ss_pred             HHHHHHHHHHHHHHHhhcccC
Q 011275          453 SIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~pet  473 (489)
                      .+++++..++.++....++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~  387 (395)
T PRK10054        367 VILALAIVAAWLLMLKGMRAR  387 (395)
T ss_pred             HHHHHHHHHHHHHHHhccccC
Confidence            777766666655554444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.93  E-value=5.5e-23  Score=203.53  Aligned_cols=362  Identities=14%  Similarity=0.145  Sum_probs=213.3

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHH-HHHHHHHHHHhhhhhhhcchhhHHH-HHhHHHHHHHHHH
Q 011275           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSM-CLGGAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASI  134 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~-~~~~~~~~i~~~l  134 (489)
                      +..++.+...+...+.+|. +.+|+|.+.+  +.|+..+. ...++.++++..++ +||+|||+.+ ..+.++.+++..+
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~   98 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPA--MVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL   98 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence            3356666666666777665 4677887654  55777654 45577778877777 9999999875 4556666677778


Q ss_pred             HHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      .+++++++.+++.+.+.|...+...+....++.|+.++++|  +.++++.+.+..+|..++++++..+.+..+ ||..|+
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~  177 (393)
T PRK15011         99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYL  177 (393)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHH
Confidence            88999999877655554444456667777788888777666  355678888899999999999888776666 799998


Q ss_pred             HHHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011275          213 VSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ..++..++.. ...+++||+|+    +++ ++ ++         .    .   +. .++            ..+......
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~~---------~----~---~~-~~~------------~~~~~~~~~  222 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMRK----ELP-LA-TG---------T----L---EA-PRR------------NRRDTLLLF  222 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccCC----CCc-cc-cc---------c----c---cc-ccc------------ccccHHHHH
Confidence            8665544443 33445777642    100 00 00         0    0   00 000            001111111


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      ........    .......+.+.++ +..+.+.   +.......+..+++.++.|+++||+|||+.+..+.....+....
T Consensus       223 ~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        223 VICTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            11111111    1111112233332 3344443   33334444666788899999999999998766554333332221


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      ....      +......  ....+..+.+... .+....+..|.+|+ .|+++.++.+...+++..+++.+.+.+.+..+
T Consensus       299 ~~~~------~~~~~~l--~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g  368 (393)
T PRK15011        299 MLMA------HSPAILL--GLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN  368 (393)
T ss_pred             HHHH------hhHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111      1111111  1111111111111 11223467899885 59999999999999999999999888888888


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          448 PQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      +...+.+.+++++++.+.. ...||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~-~~~~~~  393 (393)
T PRK15011        369 YHAVFWFALVMIIATLFCL-LRIKDV  393 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence            8777776666666655444 455654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.91  E-value=3.7e-22  Score=198.27  Aligned_cols=363  Identities=17%  Similarity=0.120  Sum_probs=224.1

Q ss_pred             hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhhH-HHHHhHHHHHHHHHH
Q 011275           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIGASI  134 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~-~~~~~~~~~~i~~~l  134 (489)
                      +..|+..+....++|.+.++.|++.++  .|++......  .+.++++|+++||+     |||+ .+..+.++.+++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~--ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTVEGLDIQT--IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            455666777888899999998988664  4666555554  48899999999999     8875 677888888777777


Q ss_pred             HHhc---chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHH
Q 011275          135 SATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRIC  210 (489)
Q Consensus       135 ~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~wr~~  210 (489)
                      .++.   .+++.+.+..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+.+. .+ ||..
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w~~~  163 (402)
T PRK11902         85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-WGNT  163 (402)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-HHHH
Confidence            7776   45777788888888888888888899999999999999999999999999988887776665553 34 7999


Q ss_pred             HHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      |++.++..++..+..++.||+++.   +++.++.++                +          ....++++++++.++..
T Consensus       164 f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~----------------~----------~~~~~~~l~~~~~~~~~  214 (402)
T PRK11902        164 YLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE----------------A----------VVGPLRDFFSRRGAWAL  214 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH----------------H----------HHHHHHHHHhCcCHHHH
Confidence            988655555544445567776431   111000000                0          01124456666666655


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHH---HHH-HHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHH
Q 011275          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANV---FVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  366 (489)
                      .....++........   .+..+...+..|.+......   ..+ ++.+++.++++++.||+|+|+.+..+.....+...
T Consensus       215 l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        215 LLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            544333322211111   11122233445555432222   222 45788999999999999999877655544444333


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHHH--HHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          367 IQVAASSSYIPGSASLYLSVGGMLM--FVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      ........  ++..  +........  +..+... ...+....++.+.+|.+.+    +....+..++...++.+.+.+.
T Consensus       292 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~  363 (402)
T PRK11902        292 GYWVLAVT--PKHL--WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV  363 (402)
T ss_pred             HHHHHHhc--CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            22211111  1111  111111111  1111111 1123344566777776554    4444444455555555677888


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          444 EQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       444 ~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      +..|+...|.+.+.+++++.+..++
T Consensus       364 ~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        364 EAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888777777665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.91  E-value=6.1e-22  Score=197.09  Aligned_cols=370  Identities=14%  Similarity=0.122  Sum_probs=223.0

Q ss_pred             hhhhccceeeccch-hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchh-hHHHHHhHHHHHHHHHHHHhc
Q 011275           61 FLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISATT  138 (489)
Q Consensus        61 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~~~~~~~~~~i~~~l~~~~  138 (489)
                      +.+....++..+.+ +.+.+++|++.  .+.|++.+.+.++..++++++|.++||+|| |+++..+.++.+++..+..+.
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~--~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~   89 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSG--AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV   89 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            34333444444444 44556677764  467999999999999999999999999965 888888888888888888899


Q ss_pred             chHHHHHHHHHHHhhhcccccccccchh----c----ccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011275          139 RNLIGMLLGRFVVGTGMGLGPTVAALYV----T----EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (489)
Q Consensus       139 ~~~~~l~~~R~l~G~g~g~~~~~~~~~i----~----e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~  210 (489)
                      ++++.+++.|++.|++.+...+......    .    |......|.+..+.      +|..+++++++.+.. ...|+. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~-~~~~~~-  161 (418)
T TIGR00889        90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDI-ELSNIQ-  161 (418)
T ss_pred             cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcc-cchhHH-
Confidence            9999999999999998766655444332    1    33333345555542      455555555544322 222454 


Q ss_pred             HHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      |++.++..++..+..+++||+|+   .+++.++   ..+             +         .......+.++++.++..
T Consensus       162 f~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~---~~~-------------~---------~~~~~~~~~~k~~~~~~~  213 (418)
T TIGR00889       162 LYITAGSSALLGVFALTLPDIPV---AKSTAKM---SIK-------------V---------MLGLDAFILFKNKRMAIF  213 (418)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCC---Ccccccc---CHH-------------H---------HhhhhHHHHhcCCCeeeH
Confidence            44444444444445567788753   0111000   000             0         000112334555555444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-----------cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhH
Q 011275          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-----------SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      ....++.....    .....+.+...++.+.+           .+.......+...++.+..+++.||+|||+++..+.+
T Consensus       214 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       214 FFFSMLLGAPL----QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             HHHHHHHHhHH----HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            44333322111    11111222223332211           2444555667788888999999999999999888777


Q ss_pred             HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHH
Q 011275          360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~  438 (489)
                      ..++.........    ......+..+...++.+..+.. ..+....++.|.+|++.|++++|+.+ ....++..++|.+
T Consensus       290 ~~~v~~~l~~~~~----~~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l  364 (418)
T TIGR00889       290 AWALRFGFFAYGD----PEYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL  364 (418)
T ss_pred             HHHHHHHHHHHcC----cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6665543332211    1111111111222233333221 23444557899999999999999997 5567888899998


Q ss_pred             HHHHHHHh------CCchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          439 FLRLLEQL------GPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       439 ~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                      .+.+.+..      |+...|.+.+++.+++.++..+..||++++-
T Consensus       365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            88888874      3567788888888888787888889887754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.91  E-value=7.7e-22  Score=194.59  Aligned_cols=357  Identities=14%  Similarity=0.055  Sum_probs=228.3

Q ss_pred             HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHH----HHhHHHHHHHHH
Q 011275           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIGAS  133 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~----~~~~~~~~i~~~  133 (489)
                      +..+......++..|.+|.+.+|+|.+.  .+.|++.+.+.++..++++++|+++||+|||...    ..+..++.+  .
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~--~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGE--EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            3334444445678888999999988864  4668999999999999999999999999985443    222222222  2


Q ss_pred             HHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      .+..+++++.+++.|.++|.+.+...+....+..|+  +++|++..+......++|..+++++++.+.+..+ ||..|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~  163 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAI  163 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHH
Confidence            445678999999999999999888888887777664  5788999999999999999999998887777667 7998887


Q ss_pred             HHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011275          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       214 ~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ......+. +..+..+|+++    +++.++ +                        ++.....+..+.+++++++.....
T Consensus       164 ~~~~~~~~-~~~~~~~~~~~----~~~~~~-~------------------------~~~~~~~~~~~~l~~~~~~~~l~~  213 (382)
T TIGR00902       164 LTAGLAFM-LIGFLIKPTIP----PKDAIP-E------------------------DESQGDSAFIALLKNPMNLRFLAA  213 (382)
T ss_pred             HHHHHHHH-HHHHHcCCCCC----CCcccc-c------------------------cccccchhHHHHHcChHHHHHHHH
Confidence            54432222 22233344321    000000 0                        000011234566666666655443


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHH
Q 011275          294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  370 (489)
                      ..+.....    .....+.+...++.|.+.   +.......++.+++.++.+++.||+|+|+.+.++.+...+.......
T Consensus       214 ~~l~~~~~----~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~  289 (382)
T TIGR00902       214 VCLIQGAH----AAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA  289 (382)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33322221    112223333445556554   34445566788888889999999999999887777666665544332


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCc
Q 011275          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQLGPQ  449 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~  449 (489)
                      ...        .+..+...++..+.+... .+....++.+. |++.|++++++.+.. ..++..+++.+.+.+.+..|. 
T Consensus       290 ~~~--------~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-  358 (382)
T TIGR00902       290 IEA--------FPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-  358 (382)
T ss_pred             Hhh--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence            111        111112223333333332 22234467787 999999999997654 446777788888888888875 


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 011275          450 LLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~  466 (489)
                      ..|.+.+++.+++.++.
T Consensus       359 ~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       359 GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66777777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.91  E-value=8.7e-22  Score=196.85  Aligned_cols=365  Identities=18%  Similarity=0.114  Sum_probs=203.6

Q ss_pred             eeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH---hcch---
Q 011275           68 GVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---TTRN---  140 (489)
Q Consensus        68 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~---~~~~---  140 (489)
                      +...+.+|...+ ++|++.  .+.|++.+.+.+++.++++++|+++||+|||+++.++..+..++.....   .++.   
T Consensus        27 ~~~~~~~~~~l~~~~g~s~--~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSG--TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY  104 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555544 477764  4678999999999999999999999999999999887666555433221   1111   


Q ss_pred             --HHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH
Q 011275          141 --LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (489)
Q Consensus       141 --~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~  218 (489)
                        ....++++++.|.+.....+....+..+ . +++||+..+.......+|..+++++++.+.+. + |++.|++..+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~  180 (420)
T PRK09528        105 NILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQINFWLGSGSA  180 (420)
T ss_pred             HHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chHhHHHHHHHH
Confidence              1112223333343332222222222221 1 34566677777777778877777777666543 4 789998876665


Q ss_pred             HHHHHHhhcc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHH
Q 011275          219 AILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLF  297 (489)
Q Consensus       219 ~~~~~~~~~~-pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      ++..+..++. +|.++-   +++.++ ++                     ++++........+.+++++++...+.....
T Consensus       181 ~~~~~~~~~~~~~~~~~---~~~~~~-~~---------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~  235 (420)
T PRK09528        181 LILLVLLFFAKPDAPST---AKVANA-LG---------------------ANASAVSLKDALALLKLPKFWFLVLYVIGV  235 (420)
T ss_pred             HHHHHHHhcccccccch---hhhccc-hh---------------------cccccccHHHHHHHccCCCeEeehHHHHHH
Confidence            5554444433 332210   000000 00                     000001111233455556555433322221


Q ss_pred             HHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhc
Q 011275          298 ALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  374 (489)
                      ...........+.|..+.+...+.+.   +.......+...++.++.+++.||+|||+.+..+....++...+....   
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---  312 (420)
T PRK09528        236 ACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---
Confidence            11111111122233333333223322   344455567788999999999999999998777666555544433221   


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Q 011275          375 YIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQLGPQLLYS  453 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  453 (489)
                        .+..  .+ +....+....+... .+....+..|.+|++.|++..+. .+....+++.+++.+.+.+.+..|+...|.
T Consensus       313 --~~~~--~~-~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~  386 (420)
T PRK09528        313 --TGPL--EV-SILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL  386 (420)
T ss_pred             --ccHH--HH-HHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence              1111  11 11111112221111 12233567888999999988766 456677888899998899999889888888


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 011275          454 IFGTFCLMAVAFVKRNVVE  472 (489)
Q Consensus       454 ~~~~~~~~~~~~~~~~~pe  472 (489)
                      +.+++.++..++....+++
T Consensus       387 ~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        387 ILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            8888777666655555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.90  E-value=3.9e-22  Score=223.41  Aligned_cols=342  Identities=12%  Similarity=0.024  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH---hHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccch
Q 011275           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~---~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  165 (489)
                      ..++..+.+.+++++.+++.|+++||+|||+++..   ..+...+....+...+|++.++++|+++|++.+...++..++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            45788889999999999999999999999998633   223333333344455899999999999999999999999999


Q ss_pred             hcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHH
Q 011275          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE  245 (489)
Q Consensus       166 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~  245 (489)
                      +.|++|+++|++++++.+++..+|.++|+++++.+....+ |++.|+...+..++.++..+++||++.   .+.+.....
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  208 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKIDR  208 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCeecc
Confidence            9999999999999999999999999999999988876655 688886555555555555566666531   000000000


Q ss_pred             HHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch
Q 011275          246 AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL  325 (489)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (489)
                      .          .   ..+.          ...++.+.+++.++...+...+..+.........+.|....++......+.
T Consensus       209 ~----------~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  265 (1140)
T PRK06814        209 N----------I---IRST----------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL  265 (1140)
T ss_pred             c----------h---HHHH----------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence            0          0   0000          012344455555555544433332221111122222222222212222356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC-C-----------chhhHHHHHHHHHHH
Q 011275          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP-G-----------SASLYLSVGGMLMFV  393 (489)
Q Consensus       326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~  393 (489)
                      .....+++.++|.++.++++|+.++++.+..+.++.++....+......... .           ....+......++++
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            6677788999999999999998877766555544444433322221000000 0           011111222222222


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Q 011275          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTF  458 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~  458 (489)
                      ++.+.. .+...++..+..|++.||+++|+.+.+..++..+++.+.+.+.+. .+....+.+.+++
T Consensus       346 ~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        346 AAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            222222 223455788999999999999999999999888888877666543 3333444444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.90  E-value=5.2e-21  Score=188.75  Aligned_cols=350  Identities=13%  Similarity=0.088  Sum_probs=216.9

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhh----HHHHHhHHHHHHHHHHHHhcc
Q 011275           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASISATTR  139 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr----~~~~~~~~~~~i~~~l~~~~~  139 (489)
                      ....+++.+.+|.+.+|+|.+.  .+.|+..+.+.++..++++++|+++||+|||    +.+.+...+  ........++
T Consensus        17 ~~~~g~~~p~l~~~l~~~g~s~--~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~   92 (382)
T PRK11128         17 FFAYGVFLPFWSVWLKGQGYTP--ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAH   92 (382)
T ss_pred             HHHHHHHhhhHHHHHHhcCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcc
Confidence            3445678888899999988764  4668999999999999999999999999984    333222221  1223344568


Q ss_pred             hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011275          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      +++.+++.|++.|++.+...+...+++.|+  +++|++..+.......+|..+|++++..+.+..+ ||..|+..++..+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~  169 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHH
Confidence            899999999999999888888777777776  4568888888888889999999999988877666 7999987654444


Q ss_pred             HHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011275          220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (489)
Q Consensus       220 ~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      +..+..++.||.++    +++ ++  +                       .......++++.++++.++.......+...
T Consensus       170 ~~~~~~~~~~~~~~----~~~-~~--~-----------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~  219 (382)
T PRK11128        170 SMLLGQLLRPTIMP----QGE-SR--Q-----------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQG  219 (382)
T ss_pred             HHHHHHHccCCCCC----ccc-cc--c-----------------------ccccccchHHHHHcChhHHHHHHHHHHHHH
Confidence            33333334444311    000 00  0                       000011245667777766655443333322


Q ss_pred             HhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          300 QQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      ....    ...+.+....+.+.+.   +.......++.+++.++.+++.||+++|+.+..+....++........     
T Consensus       220 ~~~~----~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----  290 (382)
T PRK11128        220 SHAA----YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----  290 (382)
T ss_pred             HhHh----HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            2111    1112222334455543   334445556777888899999999999998777766555544332211     


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchhHHHH
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLGPQLLYSIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~  455 (489)
                       +  ..+..+...++.++.+... .+....+..+. |++.+++.++..+.+. .++..+++.+.+.+.+..|. ..|...
T Consensus       291 -~--~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~  364 (382)
T PRK11128        291 -T--ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVM  364 (382)
T ss_pred             -h--hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence             1  1111222233333333322 22333456666 5666788888877554 34557788888888888775 455556


Q ss_pred             HHHHHHHHHH
Q 011275          456 GTFCLMAVAF  465 (489)
Q Consensus       456 ~~~~~~~~~~  465 (489)
                      +.+.+.+...
T Consensus       365 ~~~~~~~~~~  374 (382)
T PRK11128        365 ALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHH
Confidence            6555554433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.89  E-value=1.3e-21  Score=191.28  Aligned_cols=328  Identities=15%  Similarity=0.063  Sum_probs=196.8

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhhHHH-HHhHHHHHHHHHHHHhc--
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAF-QLCALPMIIGASISATT--  138 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~-~~~~~~~~i~~~l~~~~--  138 (489)
                      ..++++.+|.+.+|+|++.+  +.|+.... .+...+ .+++|+++||+     ||||.+ +.+.++.++...+.++.  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~--~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLK--TIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHH--HHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            45567788999999998865  44665433 344444 89999999998     899975 56777777776677776  


Q ss_pred             -chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-------hHHH
Q 011275          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRIC  210 (489)
Q Consensus       139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-------wr~~  210 (489)
                       .+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+....+.       ||..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence             45556777788888888888888889999999999999999999999999998888887665544441       7999


Q ss_pred             HHHHHHHHHHHHHHhh-cccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011275          211 FWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~-~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      |++.++..++..+..+ ..||+++.   +.+.++.++.                          ....+++.++++..+.
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~  210 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQ  210 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchH
Confidence            9987666655544444 34664220   0000000000                          0012333444444222


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---HHHHHH-HHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHH
Q 011275          290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  365 (489)
                      .........+.... ......+.+.+.++.|.+...   .....+ +..+++.++++++.||+|||+.+..+.+..++..
T Consensus       211 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~  289 (356)
T TIGR00901       211 ALLLLLLIVLYKLG-DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN  289 (356)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            21111111111111 111222223333335555433   233233 4667899999999999999998777766655544


Q ss_pred             HHHHHHhhccC-C--CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH
Q 011275          366 AIQVAASSSYI-P--GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW  429 (489)
Q Consensus       366 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  429 (489)
                      ........... .  +....+......++..+... ...+....+..|.+|+++|++.+|+.+++.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       290 AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            43332211110 0  00111111111212122211 1234556789999999999999999887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=9.2e-21  Score=187.99  Aligned_cols=365  Identities=17%  Similarity=0.145  Sum_probs=214.7

Q ss_pred             hhhhccceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH---
Q 011275           61 FLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---  136 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~---  136 (489)
                      ++.....+.+.+.+|.... ++|.+  ..+.|+..+.+.+++.+++++.|+++||+|||+.+..+.....++.....   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   89 (396)
T TIGR00882        12 FLYFFIMSAYFPFFPIWLHDVNGLS--KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV   89 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456666665544 56765  44678999999999999999999999999999999887766655433221   


Q ss_pred             hc-----chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011275          137 TT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       137 ~~-----~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f  211 (489)
                      ..     ..+..+++.|++.|++.+...+....+..|..+  ++++..+.......+|..+++++++.+.+. + ||.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~-~~~~f  165 (396)
T TIGR00882        90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-D-PQIVF  165 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-C-chHHH
Confidence            11     123345677899999888888877777766533  334455666666677877788877766543 4 79999


Q ss_pred             HHHHHHHHHHHHHhhc-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011275          212 WVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      ++..+..++..+..+. .||+|+.       ++.++.    .             + .+.++.+..+..+.+++++++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~-------------~-~~~~~~~~~~~~~~l~~~~~~~~  220 (396)
T TIGR00882       166 WLGSGFALILMLLLMFAKPKAPSS-------ATVANA----L-------------G-ANASAFSLKLALELFRQRKFWMF  220 (396)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc----c-------------c-cccCCCCHHHHHHHHcCCcHHHH
Confidence            8866555554444333 3443320       000000    0             0 00011112245667777766544


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHH
Q 011275          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  367 (489)
                      ....................|....++..+.+   .+.......+...++.+..+++.||+|||+.+.++....++....
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            33222211111111111222333322222222   233444455677788889999999999999887776655554433


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 011275          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQL  446 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  446 (489)
                      ....     .+..  .+ ....++........ ......+..|..|++.++++.+. .+....+++.+++.+.+.+.+..
T Consensus       301 ~~~~-----~~~~--~~-~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~  371 (396)
T TIGR00882       301 SSFA-----TTAL--EV-VILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI  371 (396)
T ss_pred             HHhc-----CChH--HH-HHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence            2211     1111  11 11122222222111 11223356778888999887776 46678889999999999999988


Q ss_pred             CCchhHHHHHHHHHHHHHH
Q 011275          447 GPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~  465 (489)
                      |+...|.+.+++.++....
T Consensus       372 G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       372 GFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            9888888888776665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.89  E-value=2.6e-20  Score=186.90  Aligned_cols=360  Identities=19%  Similarity=0.186  Sum_probs=209.5

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHH
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~  146 (489)
                      ....+..++.+..|+|-+++   ..|+.+...++.+++.++.|.|+|.||||.+++.+.++..+|++.++.++|...+++
T Consensus        60 ~~~~a~~l~~I~~diG~~~~---~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ia  136 (599)
T PF06609_consen   60 LVLPASILPYINADIGGSDN---WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIA  136 (599)
T ss_pred             HhccHHHHHHHHHhcCCCcc---chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHH
Confidence            33445667889999885533   468889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh-
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-  225 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-  225 (489)
                      +-.+.|+|.|.... ....++|..|.+.|+....+...........++.++..+....+ |||.|++..+...+.++.. 
T Consensus       137 g~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  137 GMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHHHHHHH
Confidence            99999999877764 45568999999999877766655544444445555544443444 8999998766555443333 


Q ss_pred             -hcccCChHHHHhcCC---HHHHHHHHHHHhC-----------------CC---chh--HHHHH----------HHhhcc
Q 011275          226 -VFCAESPHWLYKKGR---TAEAEAEFEKLLG-----------------GS---HVK--SSLAE----------LSKLDR  269 (489)
Q Consensus       226 -~~~pEsp~~l~~~~~---~~~~~~~l~~~~~-----------------~~---~~~--~~~~~----------~~~~~~  269 (489)
                       ++.|.+  +-..+++   ..+.-++++.+..                 ..   ..+  +.+..          ..-.+.
T Consensus       215 ~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~  292 (599)
T PF06609_consen  215 FFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW  292 (599)
T ss_pred             HHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence             334433  2221221   1222223332200                 00   000  00000          000010


Q ss_pred             C-CCCcchhHHHhhhc-cchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC------CcchHHHHHHHHHHHHHHHH
Q 011275          270 G-DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL------SSGLANVFVGIANLLGSVVA  341 (489)
Q Consensus       270 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~g~~~~  341 (489)
                      . ...++.--.+++++ |.+...++..++..   +..+....+|.+......+.      ..++...+.+.+...|.++.
T Consensus       293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G---~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~  369 (599)
T PF06609_consen  293 FGAPKDPLFPHRLFKDRRGFAALLVISFISG---MNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL  369 (599)
T ss_pred             hccCCCCcCCHHHhccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH
Confidence            0 00111112345554 22222222222221   11122223444443332222      23566777888888999999


Q ss_pred             HHHHhhcCCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhH
Q 011275          342 MVLMDKLGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA  420 (489)
Q Consensus       342 g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  420 (489)
                      +.+..+++|-| .++++...+.+++.++....  . .+... ......+..+.+++.  .. .......-..|.+.-+++
T Consensus       370 g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--~-~n~~~-~i~~~~l~g~giG~~--~~-~~~~~~ql~~p~~~ig~a  442 (599)
T PF06609_consen  370 GLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--P-DNKNA-AIAFLVLAGFGIGGI--LV-PAIVIAQLIVPDEDIGTA  442 (599)
T ss_pred             HHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--C-CCcch-HHHHHHHHHHhHHHH--HH-HHHHeeEeeeCchHHHHH
Confidence            99998888755 44455555544444333221  1 11111 111111111122211  11 223344556799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011275          421 MAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      .|+..++..+|+.++..++...+
T Consensus       443 ~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  443 TGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999988887765544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=5.4e-20  Score=185.75  Aligned_cols=160  Identities=14%  Similarity=0.157  Sum_probs=131.8

Q ss_pred             HHHHhhhhccceeeccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~  132 (489)
                      ....+...+....+.+.+|.+..+   +|++  +.+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s--~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~   93 (475)
T TIGR00924        16 FFVELWERFSYYGMQGILAVYLVQQAGLGFS--QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH   93 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            334444444444455566666543   6665  4467899999999999999999999999 899999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCccc---chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~  209 (489)
                      ++.+++++++.+.++|++.|+|.|...+....+++|++|+++   |+++.++++.+.++|..+|++++..+.+..+ ||+
T Consensus        94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~  172 (475)
T TIGR00924        94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHV  172 (475)
T ss_pred             HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHH
Confidence            999999999999999999999999999999999999998765   8889999999999999999999888776666 799


Q ss_pred             HHHHHHHHHH
Q 011275          210 CFWVSIVPAA  219 (489)
Q Consensus       210 ~f~~~~~~~~  219 (489)
                      .|++.++..+
T Consensus       173 ~f~~~~~~~~  182 (475)
T TIGR00924       173 GFNLAAVGMV  182 (475)
T ss_pred             HHHHHHHHHH
Confidence            9987654333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.88  E-value=4.4e-22  Score=206.44  Aligned_cols=294  Identities=16%  Similarity=0.177  Sum_probs=191.0

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      ++..+......+.++..++++.++++++..  +.|++.+.+.+|++++.++.++++||+|||+.+.++.+++++++++.+
T Consensus        39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~--~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a  116 (633)
T TIGR00805        39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTS--SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS  116 (633)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhhhhCCCCC--cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence            334444555567888899999999998755  458999999999999999999999999999999999999999999987


Q ss_pred             hcc---------------------------------------------------hHHHHHHHHHHHhhhcccccccccch
Q 011275          137 TTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAALY  165 (489)
Q Consensus       137 ~~~---------------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~~~  165 (489)
                      +.+                                                   .+..++++|+++|+|.+..++....+
T Consensus       117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~  196 (633)
T TIGR00805       117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY  196 (633)
T ss_pred             ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence            652                                                   24567789999999999999999999


Q ss_pred             hcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC------------------ch---hHHHHHHHHHHHHHHHHH
Q 011275          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GW---WRICFWVSIVPAAILCLA  224 (489)
Q Consensus       166 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~------------------~~---wr~~f~~~~~~~~~~~~~  224 (489)
                      +.|++|+++|+++.+++..+..+|+.+|++++..+.+..                  .|   ||..|++.++..++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988876554321                  12   677777766666655555


Q ss_pred             hhcccCCh-HHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhh
Q 011275          225 MVFCAESP-HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLS  303 (489)
Q Consensus       225 ~~~~pEsp-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
                      ++++||+. +.. .+.+.++.++...+ .+......   +   ............+++++++.+....+...+....   
T Consensus       277 l~~~p~~lp~~~-~~~~~~~~~~~~~~-~~~~~~~~---~---~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~---  345 (633)
T TIGR00805       277 FFFFPKALPKEG-KRVNVDVHETEKLE-KSEDKSRK---K---NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA---  345 (633)
T ss_pred             HHhCccccCCcc-cccchhhhhhhccc-ccccccch---h---hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---
Confidence            56666642 100 00000000000000 00000000   0   0000000112355677777666555444333222   


Q ss_pred             hHHHHHHhHHHHHH-hcCCCcchH---HHHHHH-HHHHHHHHHHHHHhhcCCc--hhHHHhhHHHHHH
Q 011275          304 GINAIFYFSSSVFK-SAGLSSGLA---NVFVGI-ANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVS  364 (489)
Q Consensus       304 ~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~i-~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~  364 (489)
                       ......+.|.+++ +.+.+....   .....+ +.++|.+++|+++||++++  +.+..+.....++
T Consensus       346 -~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       346 -FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             -HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence             2233334444443 355554433   333333 5578999999999999854  4555554444444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=9.2e-21  Score=191.36  Aligned_cols=139  Identities=15%  Similarity=0.201  Sum_probs=117.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHHhcchHHH-HHHHHHHHh
Q 011275           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIG-MLLGRFVVG  152 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~-l~~~R~l~G  152 (489)
                      ..+.+++|++.+  +.+++.+.+.....+..+++|+++|| +|||+++..+.+++++++++++++.+... +.++|.++|
T Consensus        39 ~yl~~~lg~~~~--~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~  116 (489)
T PRK10207         39 VFFVKQLGFSQE--QAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA  116 (489)
T ss_pred             HHHHHHcCCCHH--HHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            345667887654  44677888877777778899999999 99999999999999999999999877555 447999999


Q ss_pred             hhcccccccccchhcccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          153 TGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      +|.|...+....+++|.+|+++  |++..++++++.++|..+++.++..+.+..| ||+.|++..+
T Consensus       117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i  181 (489)
T PRK10207        117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGA  181 (489)
T ss_pred             hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHH
Confidence            9999999999999999999874  5778999999999999999999888887777 6999987543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=1.4e-20  Score=189.39  Aligned_cols=333  Identities=17%  Similarity=0.143  Sum_probs=202.2

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc----chh-hHHHHHhHHHHHHHHHHHHhcch------HHH
Q 011275           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN------LIG  143 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GR-r~~~~~~~~~~~i~~~l~~~~~~------~~~  143 (489)
                      +.+.+++|++.  .+.|++.+...+..++..++.|+++||    +|| ||.++.+...++++.+++...++      ...
T Consensus        24 ~~~~~~~g~s~--~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        24 FFYTDVLGLSA--AFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHccCCCH--HHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            34455677764  456899999999999999999999997    788 45677788888888887776654      455


Q ss_pred             HHHHHHHHhhhcccccccccchhcccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc-------cCCchhHHHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWVSI  215 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~~~wr~~f~~~~  215 (489)
                      +++.+++.+++.+.......++..|.. ++++|++..++.+.+..+|..++..+..++.       +..+ ||+.+++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i~~  180 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHHHH
Confidence            677889999888877766677888887 5789999999888877777554443322221       1223 799888765


Q ss_pred             HHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHH
Q 011275          216 VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (489)
Q Consensus       216 ~~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      +..++..+. .+..+|.+.     ++.++.                        +++.+....+++++++++++......
T Consensus       181 ~l~~~~~~~~~~~~~e~~~-----~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYS-----EIPKNI------------------------EKKLSLKQIFKALFKNDQLLILCLAY  231 (437)
T ss_pred             HHHHHHHHHHHcCCEecCC-----CCCccc------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence            555544433 345666531     000000                        00000111244556666666554433


Q ss_pred             HHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhc
Q 011275          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  374 (489)
                      ++.............+|..+.++ .....+.......++.+++.++.+++.||+|+|+.+..+.....++........  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--  308 (437)
T TIGR00792       232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--  308 (437)
T ss_pred             HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--
Confidence            33222211111112222222211 111123344455788889999999999999999988777666555544333211  


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          375 YIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                         ..  .+......++..++... ..+..+.+.+|..|       ++.+|+..|+.+.+..++..+++.+.+.+++..|
T Consensus       309 ---~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       309 ---SN--LPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             ---hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               11  11111111222222211 13445566777754       5668999999999999999999999888887665


Q ss_pred             C
Q 011275          448 P  448 (489)
Q Consensus       448 ~  448 (489)
                      +
T Consensus       383 ~  383 (437)
T TIGR00792       383 Y  383 (437)
T ss_pred             C
Confidence            4

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=8.3e-21  Score=183.04  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=148.2

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      .+++|+..|+.-+=.+ ...+.|.+.+|+|++.++. .|.+.+.++.+|++++++.|+++||+|.|+++..+.+.+++.+
T Consensus        29 ~~~lC~fGF~~e~R~n-~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        29 VLYLCFYGFMAQFRPG-ESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHHhhch-HHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4456666666543322 3446778888999986642 6899999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~  212 (489)
                      ++.++++++..+.+.|++.|++.|+.. ....++..++|+++|+++.++...+..+|.+++++++..+. ..+ ||+.+.
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~  183 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHH
Confidence            999999999999999999999999999 89999999999999999999999999999888888877643 345 676654


Q ss_pred             H---HHHHHHHHHHHhhcccCChHHHHhcC
Q 011275          213 V---SIVPAAILCLAMVFCAESPHWLYKKG  239 (489)
Q Consensus       213 ~---~~~~~~~~~~~~~~~pEsp~~l~~~~  239 (489)
                      +   ......+.+++.+++|..++-++.++
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~  213 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFNR  213 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhcc
Confidence            4   33444445566678886666555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=1.4e-19  Score=182.36  Aligned_cols=371  Identities=18%  Similarity=0.195  Sum_probs=233.2

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh-----cchHH
Q 011275           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLI  142 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~  142 (489)
                      .+...+++-+..++  +.+....+++.....+-..+.+++.|.++||+.||++++.+.++..+..++.++     ..+.+
T Consensus        27 ~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~  104 (524)
T PF05977_consen   27 WMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW  104 (524)
T ss_pred             HHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence            33444555555553  456667788889999999999999999999999999999998877665444332     24778


Q ss_pred             HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011275          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~  222 (489)
                      .+++.-++.|++.+...|...+++.|+.|+++...++++.++..++..++||.+|+.+....| -.+.|++.++..++..
T Consensus       105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i  183 (524)
T PF05977_consen  105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISI  183 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999998889888877655445 3667777654443333


Q ss_pred             HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011275          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +.....++.+     +.+..+.++..             .+++          ..++-...++..+..+....++.+...
T Consensus       184 ~~l~~~~~~~-----~~~~~~~e~~~-------------~~l~----------~G~ryv~~~~~l~~~l~~~~~~~l~~~  235 (524)
T PF05977_consen  184 LALLRWKPPP-----PPSSLPRERFF-------------SALR----------EGLRYVRSSPPLRSVLLRSFLFNLFAS  235 (524)
T ss_pred             HHHHHccccc-----cccccchhhhh-------------hhHH----------HHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence            3222222111     00000000000             0000          012222223344433333333222211


Q ss_pred             hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011275          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .....++++..+.++.....-|+.....++|.++|+++.+++.+|+++++++..+.+..+++...+.....        .
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~--------~  307 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS--------F  307 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH--------H
Confidence            11122223322222222222356777888999999999999999999988877776666555444332211        1


Q ss_pred             HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 011275          383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  462 (489)
                      +.....+++.+.+.... .....+...+..|.+.||+..++...+...+..++..+.+.+.+..|...++.+.++..++.
T Consensus       308 ~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            22222222222222221 12233467788999999999999999988888888888888888888887777666655444


Q ss_pred             HHHH-HhhcccCCCCCH
Q 011275          463 VAFV-KRNVVETKGKSL  478 (489)
Q Consensus       463 ~~~~-~~~~pet~~~~~  478 (489)
                      .++. ...+|+.+..+.
T Consensus       387 ~~~~~~~~l~~~~~~d~  403 (524)
T PF05977_consen  387 ALIALRFPLRQGEELDL  403 (524)
T ss_pred             HHHHHHhcCcccccCCC
Confidence            4333 344666655443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=5.3e-20  Score=169.22  Aligned_cols=143  Identities=24%  Similarity=0.267  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchh
Q 011275           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      ..-.|.+.|+|.+++++.++.+|.++||+|||++++.+++..++...+.+.+.||..++++|++.|+..|-.. +..+++
T Consensus        67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAii  145 (451)
T KOG2615|consen   67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAII  145 (451)
T ss_pred             chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHHH
Confidence            4456899999999999999999999999999999999999999999999999999767777999999987554 677899


Q ss_pred             cccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc---CCchhHHHHH----HHHHHHHH-HHHHhhcccCCh
Q 011275          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFW----VSIVPAAI-LCLAMVFCAESP  232 (489)
Q Consensus       167 ~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~wr~~f~----~~~~~~~~-~~~~~~~~pEsp  232 (489)
                      +|..++++|++.++.++.+..+|.++||.+|+.+.+   ..+  +.+|.    +..+.... ..+..+++|||-
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999998776   222  12222    22222222 445567899994

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=8.4e-19  Score=173.60  Aligned_cols=368  Identities=11%  Similarity=0.016  Sum_probs=214.7

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHH--HHHHHHHHHHHHHhh-hhhhhcchhhHHHHHhHHHH-HHH
Q 011275           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLS-GWIADGVGRRRAFQLCALPM-IIG  131 (489)
Q Consensus        56 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~s~~~~g~~ig~~~~-g~l~Dr~GRr~~~~~~~~~~-~i~  131 (489)
                      +....+..|...++..+.+|.+.+|.|.+.+  +.|+.  .+.......+.++++ ++..||+||||.+++...+. .+.
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~--~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLT--ALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            3334466777778889999999999987755  44665  344455555666666 55789999999976655332 211


Q ss_pred             HHHHH-h--cch-HHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchh
Q 011275          132 ASISA-T--TRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (489)
Q Consensus       132 ~~l~~-~--~~~-~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~w  207 (489)
                      ....+ +  ..+ ...++..-++.++..+...+....+..|..++++++...+....+..+|..++......+.+..+ |
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w  162 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-Q  162 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-H
Confidence            22222 1  222 33444555556666666667777788899999989999988888888898888776666655556 7


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011275          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      |..|++.+...++..+..++.+|++.     ++.++.+                           .+..+.++.++++..
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~~---------------------------~~~~~~~~~l~~~~~  210 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAV-----ASPEAPL---------------------------ARRASLFRFFRRPLA  210 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccch---------------------------hhHHHHHHHHcCcCH
Confidence            99998876555544444444443321     0000000                           000123455665665


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHH---HHHH-HHHHHHHHHHHHHHhhcCCchhHHHhhHHHHH
Q 011275          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN---VFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  363 (489)
                      +......+++......    ...+.+..+++.|.+.....   ...+ ...+++.+++|++.||+|+|+.+..+....++
T Consensus       211 ~~~~~~~~l~~~~~~~----~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       211 WSLLALALLSAMTAVS----GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5444433333221111    11122333444566644322   2233 35567788999999999999988766554433


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          364 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-RIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      .................  ........+..+..+... +.......+..++ +.+++.+++.+++.+++..++|.+.+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l  363 (390)
T TIGR02718       287 LALLWFAQAAFWLAPGI--AVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL  363 (390)
T ss_pred             HHHHHHHHHHcccCCcH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222211111101111  111111111111111111 1222333444554 8999999999999999999999999999


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHH
Q 011275          443 LEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      .+..|+...|.+.+.+.+++.+.
T Consensus       364 ~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       364 TDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHH
Confidence            99888877887777666665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=99.84  E-value=2.4e-18  Score=174.05  Aligned_cols=170  Identities=18%  Similarity=0.073  Sum_probs=124.7

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc------chHHHH
Q 011275           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNLIGM  144 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~------~~~~~l  144 (489)
                      +...|.+.+++|++.++  .+++.+.. ..+.+++++.|+++||+|||+++.++.+++.++.++++++      .+++.+
T Consensus        47 sv~s~~L~~~lgls~~~--l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l  123 (591)
T PTZ00207         47 NLISGAMQARYNLTQRD--LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL  123 (591)
T ss_pred             HHHHHHHHHHhCcCHHH--HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence            34567788999987554  45555542 3445677889999999999999999999999999999987      689999


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHH-HHHHhhcccccCCchhHHHHHHHHHHHHHH-H
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVPAAIL-C  222 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~  222 (489)
                      .+.|++.|+|.+...+.....+.+++| ++||++.++...+..+|.. ++++....+.  .+ |+..|++.++..++. +
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-TSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-HHHHHHHHHHHHHHHHH
Confidence            999999999999888888888999997 7899999999999999975 4555544433  23 566665543333333 3


Q ss_pred             HHhh--cccCChHHHHhcCCHHHHHHH
Q 011275          223 LAMV--FCAESPHWLYKKGRTAEAEAE  247 (489)
Q Consensus       223 ~~~~--~~pEsp~~l~~~~~~~~~~~~  247 (489)
                      +...  ..||.|+|...+++.++.++.
T Consensus       200 l~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        200 LAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HHHhheeCCcchhhcccccCCCHHHHH
Confidence            3333  356666665555544454444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2e-20  Score=173.11  Aligned_cols=345  Identities=16%  Similarity=0.116  Sum_probs=228.2

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Q 011275           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (489)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g  156 (489)
                      -.++...+.++.+.|++.+.+.+.+.+.+++.|++.||+|+|-.+++++..+...+++.++..+++.++++|.+||+|.+
T Consensus        95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen   95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence            34455556667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhcccCCccc-chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCChHHH
Q 011275          157 LGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWL  235 (489)
Q Consensus       157 ~~~~~~~~~i~e~~p~~~-Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l  235 (489)
                      .......++++|.+|++. ||+++++.-.+.++|.++||++|+.+.+..| .+.+|.+.++..++-..+.+++-|..   
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~---  250 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPT---  250 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcc---
Confidence            999999999999999755 7999999999999999999999999988877 59999987777666666655544421   


Q ss_pred             HhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 011275          236 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV  315 (489)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (489)
                        +.+.                            ++..+..+++++++.+..... .....+.-..+.  ..-+.+....
T Consensus       251 --~~~~----------------------------~~~~~~~~~~~Ll~dP~I~~~-agai~~~n~~la--fLePtlslwm  297 (464)
T KOG3764|consen  251 --EMDP----------------------------DSTEQGTPMWSLLMDPYILLI-AGAITFSNSSLA--FLEPTLSLWM  297 (464)
T ss_pred             --ccCc----------------------------cccccCccHHHHHhCchHhhh-hcchhhccchHH--HhCcccHHHH
Confidence              0000                            011122345555554443321 111111111110  0011111122


Q ss_pred             HHh---cCCCcchHHHHHHHHHHHHHHHHHHHHhhcC--CchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          316 FKS---AGLSSGLANVFVGIANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       316 ~~~---~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.   .+...|+..++.++...+|+.+.|.+.||++  |......+.+..+++....-.+     ......++...++.
T Consensus       298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-----~~~~~L~vp~~~l~  372 (464)
T KOG3764|consen  298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-----TSIAQLWVPNFGLG  372 (464)
T ss_pred             HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-----hhHHHHhhhhHHHH
Confidence            222   3334677888889999999999999999999  4333333333333222211111     11112222222222


Q ss_pred             HHHHHHhcCccccccccccccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 011275          391 MFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      +.+...-....|... +..|.-..+   .-+...++....-.++.+++|.+.+.+...+|..|...+.+...++-..
T Consensus       373 ~~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap  448 (464)
T KOG3764|consen  373 FGIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP  448 (464)
T ss_pred             HHHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence            211111112223222 233332223   4567788887777778888888888888899999888888877665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.6e-18  Score=161.74  Aligned_cols=372  Identities=17%  Similarity=0.208  Sum_probs=243.2

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHH-
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-  135 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~-  135 (489)
                      +.--++.|......++.+|.+.+-++++.  .+.+++...++.||.+++++.|.+.+|+|+|+.++.+..++++|+.+. 
T Consensus        19 t~lFfl~G~~~~l~diLip~l~~~f~ls~--~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~   96 (422)
T COG0738          19 TSLFFLWGFITCLNDILIPHLKEVFDLTY--FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW   96 (422)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHhCccH--HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            33335667777778889999999988764  466899999999999999999999999999999999999999999998 


Q ss_pred             --HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC----------
Q 011275          136 --ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI----------  203 (489)
Q Consensus       136 --~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~----------  203 (489)
                        +...+|..++++-++.|.|.|...+.+..|++.+.|+++..+.+++.+..+.+|.+.+|+++..+...          
T Consensus        97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~  176 (422)
T COG0738          97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ  176 (422)
T ss_pred             hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence              46788999999999999999999999999999999998888899999999999999999987654321          


Q ss_pred             --------CchhHHHHHHHHHHHHHHHHHhhc--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCC
Q 011275          204 --------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG  273 (489)
Q Consensus       204 --------~~~wr~~f~~~~~~~~~~~~~~~~--~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  273 (489)
                              ...|+++|...+...+++.+....  .||.+        .++                        +++.+.
T Consensus       177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~--------~~~------------------------~~~~~~  224 (422)
T COG0738         177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ--------VAA------------------------PSLGAS  224 (422)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC--------ccc------------------------cccccc
Confidence                    112566666543333322222211  12210        000                        000001


Q ss_pred             cchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011275          274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGR  350 (489)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~gr  350 (489)
                      +.....+++++++++.-.++.+++.-........+..|..+.   .+.+.   .........+..+|.+++.++..|+..
T Consensus       225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~  301 (422)
T COG0738         225 GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP  301 (422)
T ss_pred             ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            111456788888888777777766655443333333332221   33332   244556668888999999999999988


Q ss_pred             chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH
Q 011275          351 KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV  430 (489)
Q Consensus       351 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  430 (489)
                      .+.+.+..+...+.++......+     ....+    .+.+. ..+.....|..+....+..| ++-..+.++ ..+.-.
T Consensus       302 ~k~Laf~a~~~ill~~~~~l~~g-----~v~~~----~l~~i-g~F~simfPTIfslal~~l~-~~ts~~s~~-l~maiv  369 (422)
T COG0738         302 EKYLAFYALIAILLLLAVALIGG-----VVALY----ALFLI-GLFNSIMFPTIFSLALKNLG-EHTSVGSGL-LVMAIV  369 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-----hHHHH----HHHHH-HHHhHHHHHHHHHHHHhccC-cccccccee-eeehee
Confidence            88765544333332222222221     11111    11111 11222234555556667777 333333332 333446


Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          431 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       431 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                      |+.+.|.+.+.+.|..|....+.....+|.+-.++..+.-...|++.
T Consensus       370 GGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~~~~~~~k~~~  416 (422)
T COG0738         370 GGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRL  416 (422)
T ss_pred             cchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            88899999999999888777766666666665554444443455553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=6.1e-18  Score=171.81  Aligned_cols=139  Identities=18%  Similarity=0.220  Sum_probs=111.1

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHHhcc-hHHHHHHHHHHHhh
Q 011275           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTR-NLIGMLLGRFVVGT  153 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~~R~l~G~  153 (489)
                      .+.+++|++.++  .++..+.+........+++|+++|| +|||+++..+.++++++..+++++. +...+.++|+++|+
T Consensus        47 yl~~~lg~s~~~--a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi  124 (500)
T PRK09584         47 YLVKQLGMSEAD--SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV  124 (500)
T ss_pred             HHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            345788876543  3556665554444556789999999 5999999999999999999998874 45667788999999


Q ss_pred             hcccccccccchhcccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011275          154 GMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~  217 (489)
                      |.|...+....++.|++|+++  |+...++++++.++|..+++++++.+.+..+ ||+.|++..+.
T Consensus       125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~  189 (500)
T PRK09584        125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFALSVVG  189 (500)
T ss_pred             hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHH
Confidence            999988888899999998754  4457788889999999999999888877666 79999886543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.78  E-value=3.3e-16  Score=155.44  Aligned_cols=380  Identities=14%  Similarity=0.126  Sum_probs=216.7

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh----cchhhHHHHHh-HHHHHHHHHHHHhcchHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~~~-~~~~~i~~~l~~~~~~~~~l  144 (489)
                      ..+.++.+.+++|.+.  ...+++.....+...+.+++.|.++|    |+|||+.++.. .+...++..+.+++++...+
T Consensus        23 ~~~~l~~yl~~lg~~~--~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~  100 (477)
T TIGR01301        23 QLSLLTPYVQELGIPH--AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL  100 (477)
T ss_pred             HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence            3334444667778754  45677888888888999999999999    59999999875 55555555666676664322


Q ss_pred             H------------HHHHHH-----hhhcccccccccchhcccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccc--c-
Q 011275          145 L------------LGRFVV-----GTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVK--E-  202 (489)
Q Consensus       145 ~------------~~R~l~-----G~g~g~~~~~~~~~i~e~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~--~-  202 (489)
                      +            +.+++.     .++.....+...++++|.+|+++|  +.+.++.+....+|.++|..+|....  . 
T Consensus       101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~  180 (477)
T TIGR01301       101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI  180 (477)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence            1            123333     346666777788999999999876  57899998888999888888775421  0 


Q ss_pred             -----------CCchhHHHHHHHHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011275          203 -----------IAGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG  270 (489)
Q Consensus       203 -----------~~~~wr~~f~~~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  270 (489)
                                 ....-|+.|++.++..++. .+..+.++|.|-.  ..++.++  ++.++..+               .+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~~~~~~~~---------------~~  241 (477)
T TIGR01301       181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--SEAAPPSK---------------HG  241 (477)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--hhcccccc---------------cc
Confidence                       0113588888865544443 3445567887521  0111000  00000000               00


Q ss_pred             CCCcchhHHHhhhc--cchhHHHHHHHHHHHHhhhhHHHHHHhHHH-----HHHhcCC-----Cc----c-hHHHHHHHH
Q 011275          271 DDGDIVKFEELLYG--RHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGL-----SS----G-LANVFVGIA  333 (489)
Q Consensus       271 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~----~-~~~~~~~i~  333 (489)
                      .......+.+.+++  +.++.+.+.-++.++    ++....+|.++     +++....     +.    | +..+..++.
T Consensus       242 ~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~----a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~  317 (477)
T TIGR01301       242 EEAFFGELFGAFKYLPRPVWILLLVTCLNWI----AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVV  317 (477)
T ss_pred             hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            00000111122221  223333322222222    22222222222     2221110     11    1 234455566


Q ss_pred             HHHHHHHHHHHHhhcCC-chhHHHhhHHHHHHHHHHHHHhhc-----c--------CCCchhhHHHHHHHHHHHHHHhcC
Q 011275          334 NLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSS-----Y--------IPGSASLYLSVGGMLMFVLTFALG  399 (489)
Q Consensus       334 ~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~  399 (489)
                      +.+.+++-.++.+|+|+ |+....+.+..++++....+....     .        .+.....+..+......++.++. 
T Consensus       318 ~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-  396 (477)
T TIGR01301       318 LGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-  396 (477)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-
Confidence            66777777888999985 666577766666666655433320     0        01111112222222223333322 


Q ss_pred             ccccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          400 AGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       400 ~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      ...++++++++..|++  ..|..+|+.+.+-.+.+.+.....+.+.+..|  ....+.+-++..+++.+...+.+|+++.
T Consensus       397 ~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       397 TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            2347888888888854  44999999998888888888876666555555  3466777777888888888888998764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=9.3e-18  Score=168.40  Aligned_cols=372  Identities=17%  Similarity=0.151  Sum_probs=232.0

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHH-HH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL-GR  148 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~-~R  148 (489)
                      +....+.+.++++.+.++  .+|+.++....+.+..++.+.+.||+|.|++.+.+.++..+|.++++++++++++++ .-
T Consensus        65 ~Gv~~~~~~~~f~~s~~~--~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~g  142 (509)
T KOG2504|consen   65 FGLLFEELMDYFGSSSSQ--IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFG  142 (509)
T ss_pred             ehhhHHHHHHHhCCCccH--HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            346678899998877664  679999999888999999999999999999999999999999999999999988775 68


Q ss_pred             HHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhc
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVF  227 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~  227 (489)
                      ++.|+|.|..+......+..+| +++|+.++++...+..+|..+-+.+.-.+.+..| ||+.+++.....+..++. ...
T Consensus       143 vi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  143 VIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGALL  220 (509)
T ss_pred             HHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999988888888665 5579999999999999996655555555556667 577766543333333333 333


Q ss_pred             ccCChHHHHhcCCHHHHHHHHHHHh----------------CCC-chh---HHHHHHHhhccCCC--Ccch-hH---HHh
Q 011275          228 CAESPHWLYKKGRTAEAEAEFEKLL----------------GGS-HVK---SSLAELSKLDRGDD--GDIV-KF---EEL  281 (489)
Q Consensus       228 ~pEsp~~l~~~~~~~~~~~~l~~~~----------------~~~-~~~---~~~~~~~~~~~~~~--~~~~-~~---~~~  281 (489)
                      -|.+++-   +.+ +  ++..+...                +.. ..+   ...++..+.+++..  ..+. ..   .++
T Consensus       221 rp~~~~~---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  294 (509)
T KOG2504|consen  221 RPLSPPK---KPN-E--EKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSL  294 (509)
T ss_pred             CCCCcCC---Cch-h--hhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHH
Confidence            3433210   000 0  00000000                000 000   00001111111000  1111 11   356


Q ss_pred             hhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHH--H
Q 011275          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQ--W  356 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~--~  356 (489)
                      ++++.+.....+..+.    ..+++...++++...+..+.+.   .......++.+.+|.++.|++.|+...++...  +
T Consensus       295 l~~~~fl~~~~~~~~~----~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~  370 (509)
T KOG2504|consen  295 LKDPKFLLLALSNLFA----YLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLL  370 (509)
T ss_pred             HcCchHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHH
Confidence            6665554443333322    2233444455566556666553   35667788999999999999999998544333  3


Q ss_pred             hhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011275          357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                      +.+..+++.......      ........  ..++++...+ ....+....+.|+.+.+.-+.+.|+...+.-++..++|
T Consensus       371 ~ll~~gl~~~~~p~~------~~~~~l~~--~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  371 TLLIAGLARLFLPFA------TTYVGLIV--FSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             HHHHHHHHHHHHHHh------ccHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            333333332111111      11111111  1111111111 11224445788999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CchhHHHHHHHHHHHHH
Q 011275          437 LLFLRLLEQLG-PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       437 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      .+.+.+.|..+ +...|.+.+.+.+++..
T Consensus       442 Piag~~~d~tg~Y~~~f~~~g~~~~~s~~  470 (509)
T KOG2504|consen  442 PIAGLLYDITGNYDHAFYFCGLCFLLSAV  470 (509)
T ss_pred             ccceeeeeccCCeeeehhhcChHHHHHHH
Confidence            88888778776 66677777776666653

>TIGR00788 fbt folate/biopterin transporter

Probab=99.78  E-value=1.8e-17  Score=166.91  Aligned_cols=368  Identities=17%  Similarity=0.152  Sum_probs=210.5

Q ss_pred             HHhhhhccceeeccch-hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hhHHHHHhHHHHH-HH
Q 011275           59 SSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALPMI-IG  131 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~~~~~~~-i~  131 (489)
                      ..+..|.. ......+ +.+.+++|++.++  .+...+...+.+.+-.+ +|+++||++     ||+.++++.++.+ +.
T Consensus        34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~--i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~  109 (468)
T TIGR00788        34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGAR--YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAIL  109 (468)
T ss_pred             HHHHhhHH-HHhhhhhhHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence            34556666 5555454 4455578987654  45678888888888666 999999998     8888877776653 33


Q ss_pred             HHHHHhcchHHHHH-HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHH---HHHHHHHHHhhcccccCCchh
Q 011275          132 ASISATTRNLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT---CLGLMGSLLIGIPVKEIAGWW  207 (489)
Q Consensus       132 ~~l~~~~~~~~~l~-~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~---~~G~~~~~~~~~~~~~~~~~w  207 (489)
                      ....+..++..... +.+++.+++.+..-.....+..|..+ ++++...+.....+   .+|.++++.+++.+.+..+ |
T Consensus       110 ~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~-~  187 (468)
T TIGR00788       110 YGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL-T  187 (468)
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence            22233334544444 48999999999888899999999999 66655544444434   4688888888777666556 7


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011275          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      |..|++.+...++..+...+++|++...  +.+.++.+......    ......+..+       .......+.++++..
T Consensus       188 ~~~f~~~a~l~ll~~~~~~~~~E~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~l~~~l~~~~i  254 (468)
T TIGR00788       188 RILFLITAALLLLQLFVSNLSKERRAFV--RPRIGTYLEMNMAL----LTLGVLANVK-------VQILGLRGAIQLLEI  254 (468)
T ss_pred             chHHHHHHHHHHHHHHHHHhcccccccc--cccccccchhhhhh----hhhhHHHHHH-------HHHHHHHHHHhcHHH
Confidence            9998876555555555566778863100  00100000000000    0000000000       001122333444444


Q ss_pred             hHHHHHHHHHHHHhhhh-HHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHH
Q 011275          288 RVVFIGSTLFALQQLSG-INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  366 (489)
                      +......++. +....+ .+..+++.+..++......|......+++.+++..+.+++.+|++.|+++..+.+...++..
T Consensus       255 ~~~l~fifl~-~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~  333 (468)
T TIGR00788       255 AKPLIFIFLS-YANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL  333 (468)
T ss_pred             HHHHHHHHHH-HhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence            3322222220 111111 11111222222233333456667778899999999999999999999988777665555443


Q ss_pred             HHHHHhhccC--CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          367 IQVAASSSYI--PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       367 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (489)
                      ..........  ......+.......+..+.+.+...|. ..++.++.|++.+++..++..++.+++..+++.+.+.+.+
T Consensus       334 ~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       334 FDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             CceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111000000  000001111111222233333333343 4578899999999999999999999999999977777777


Q ss_pred             HhC
Q 011275          445 QLG  447 (489)
Q Consensus       445 ~~g  447 (489)
                      ..|
T Consensus       413 ~~g  415 (468)
T TIGR00788       413 TIG  415 (468)
T ss_pred             HcC
Confidence            777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.1e-15  Score=138.86  Aligned_cols=349  Identities=18%  Similarity=0.217  Sum_probs=234.5

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHH
Q 011275           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      ..+.+.+.++++..|+|.|.+  ..|++++.-.+.+.+.+++..+++.|+|.++.+..++++.++|..+=... +...++
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s--~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~  103 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFS--VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLF  103 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            356688899999999999865  45899999999999999999999999999999999999999999988777 777889


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~  225 (489)
                      .+-.+.|.|.+......+..+.+.+|++ -+..+++|.+....|..+++.+..++.++.+.||.....=..++++.++.+
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875 678999999999999999988888887776557877665456666665554


Q ss_pred             hcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011275          226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       226 ~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      +  |...     |++ .+.                       .+.   +..+...+++++.-|.+.+   .+..+ ...+
T Consensus       183 l--Pq~~-----r~~-~~~-----------------------~~~---~~~~~~~vw~~~~aW~vtL---fmGlq-S~~~  224 (395)
T COG2807         183 L--PQAL-----REQ-AAS-----------------------IAT---KLVSVRKVWRSPLAWQVTL---FMGLQ-SLLY  224 (395)
T ss_pred             h--hhcc-----ccc-ccc-----------------------ccc---ccccccccccCchhHHHHH---HHHhh-HHHH
Confidence            3  2211     110 000                       000   0011122444444443322   22223 2334


Q ss_pred             HHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchh
Q 011275          306 NAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  381 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      +...-|.|.++.+.|.+.   |.......+..++.++....+.+|. .+|+........+.++.+.+.+.+..    ...
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~----~~~  300 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ----LPI  300 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh----HHH
Confidence            455567788888888874   4455566678888899999999975 45555544444444444443322211    111


Q ss_pred             hHHHHHHHHHH--HHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHH
Q 011275          382 LYLSVGGMLMF--VLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFGTF  458 (489)
Q Consensus       382 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~  458 (489)
                      .+..   ++.+  +..|.++.    ..+....-.++..+.-.|+.+.++++.+..+|.+++.+.|..|. ...+..+..+
T Consensus       301 lw~~---llG~G~G~~F~laL----~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         301 LWAL---LLGLGQGGAFPLAL----TLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             HHHH---HHhCccchHHHHHH----HHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            2211   1111  11111111    11122223467788899999999999999999999999998764 3445555555


Q ss_pred             HHHHHHHHH
Q 011275          459 CLMAVAFVK  467 (489)
Q Consensus       459 ~~~~~~~~~  467 (489)
                      .+...+..+
T Consensus       374 ~i~m~i~Gl  382 (395)
T COG2807         374 TLLMLIFGL  382 (395)
T ss_pred             HHHHHHHHh
Confidence            544444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=3.4e-16  Score=157.56  Aligned_cols=331  Identities=13%  Similarity=0.141  Sum_probs=186.6

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc----chhh-HHHHHhHHHHHHHHHHHHhcch------HHHH
Q 011275           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIGM  144 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr-~~~~~~~~~~~i~~~l~~~~~~------~~~l  144 (489)
                      .+..++|++.  ...|.+.....+..++..++.|.++||    +||| |.++.+.+..++...+....++      ...+
T Consensus        35 ~~t~~~gls~--~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         35 FYTDVFGLSA--AIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHHhcCCCH--HHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            3445667764  456888888888999999999999998    8884 5555676777776665554443      3455


Q ss_pred             HHHHHHHhhhcccccccccchhcccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc----c--CCchhHHHHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E--IAGWWRICFWVSIVP  217 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~----~--~~~~wr~~f~~~~~~  217 (489)
                      ++.-++.+.+.........++.+|+. ++++|.+..++-.....+|..+++.+..++.    .  ....|+..+.+.++.
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii  192 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL  192 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            56666667666566556667889998 5688998888877777776555544332211    1  111267776655444


Q ss_pred             HHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011275          218 AAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      ..+..+. .+..+|.++       +++                         +++......++..+++++++......++
T Consensus       193 ~~v~~~~~~~~~~e~~~-------~~~-------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~  240 (444)
T PRK09669        193 GVVLFFCCFFMTKERYT-------PEV-------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVV  240 (444)
T ss_pred             HHHHHHHHhCCeEEecC-------CCC-------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHH
Confidence            4333332 233333210       000                         0000011234556677777766554333


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      .............||..+..+... ..........+..+++.++.+++.||+|+|+....+.....+.........    
T Consensus       241 ~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----  315 (444)
T PRK09669        241 LLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP----  315 (444)
T ss_pred             HHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC----
Confidence            322221111122233332221100 012233344566778888999999999999988766544443222222111    


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  448 (489)
                      ++..  +......++..++.. ...+..+.+.+|..+       .+..+...++.+.+..++..+++.+.+.+++..|+
T Consensus       316 ~~~~--~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        316 PSNV--WLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             cchH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1111  111112222223222 234667778888875       23345667888888899999999888888876654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.73  E-value=9.7e-15  Score=145.60  Aligned_cols=144  Identities=22%  Similarity=0.231  Sum_probs=110.1

Q ss_pred             eccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhhHHHHHhHHHHHHHHHHHHhcc-hHHHHHH
Q 011275           70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL  146 (489)
Q Consensus        70 ~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~  146 (489)
                      +...+|.+ .+++|++.+  +.+.+.+.+.....+++++.|+++||+ |||+++.++.++.+++.++.+... +...+.+
T Consensus        28 ~~~~L~~yL~~~lgls~~--~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l  105 (493)
T PRK15462         28 MRALLILYLTNQLKYDDN--HAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            33445544 445677644  557788888888889999999999999 999999999999999987776543 2233444


Q ss_pred             HHHHHhhhcccccccccchhcccCCcc--cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      +-.+.++|.|...+....+++|.+|++  +|+...++.....++|..++|++...+.+..+ ||+.|.++++
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaai  176 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAV  176 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHH
Confidence            444455666666677778899999976  79889999999999999999999888876666 7999987654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.73  E-value=5.3e-15  Score=145.00  Aligned_cols=341  Identities=18%  Similarity=0.196  Sum_probs=197.2

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcch-hhHHHHHhHHHHHHHHHHHHhcchHHHHH
Q 011275           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-Rr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      .+...|.++...++.|++.  .|.|.+.+...+...++++++|.++||.+ +|+++.++.++.++...+....++++.++
T Consensus        18 ~G~~~p~~~~~L~~~G~s~--~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~   95 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFSG--TQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3445667777888888764  46799999999999999999999999986 57777777777777666777788998888


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHH-----HhhcccccCCchhHHHHHHHHHHHHH
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-----LIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      +.-++..+...+..|...++..+...++++  --+-+-+..++|...+.     .+.... +..+ ..+.+++.....++
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~--~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~l  171 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGK--DYGRIRLWGSIGFIVAALAFGGLLGGYL-GISG-TSLIFYIAAILSLL  171 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcccccC--CCCcchhhhhHHHHHHHHHHHHHHHhhh-cccc-ccHHHHHHHHHHHH
Confidence            887778877777777777777777653221  12222222333322221     111111 1111 23345554444444


Q ss_pred             HHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011275          221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .....+.+|++|.    +++.++.                         .++....+..+++++++....++..++....
T Consensus       172 l~~~~l~lp~~~~----~~~~~~~-------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  172 LAGFALFLPKTPP----KRSAKES-------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             HHHHHHhCCCCcc----ccccCCC-------------------------cccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence            4444556787751    1110000                         0000111234567766665544443333222


Q ss_pred             hhhhHHHHHHhHHHHHHhcC-CCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011275          301 QLSGINAIFYFSSSVFKSAG-LSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      .    .....|.+..+++.+ .+.   +.......+.+++.-+..+++..|+|.|+++.++.....+=..+......   
T Consensus       223 ~----~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~---  295 (400)
T PF03825_consen  223 H----AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD---  295 (400)
T ss_pred             H----HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            1    112223334455555 332   33333445678888889999999999999887765544433333322211   


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCch
Q 011275          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  450 (489)
                      +...............+..|... ......|+.|..|++.|++++++...+.+ +++.+++.+.+.+.+..|...
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            11111111111122334443322 12334588999999999999999888754 577777778888888877543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.70  E-value=3.9e-14  Score=141.59  Aligned_cols=355  Identities=17%  Similarity=0.202  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhH-HHHHHHHHHHHhc-ch-HHHHHHHHHHHhhhcccccccccchh
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA-LPMIIGASISATT-RN-LIGMLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~-~~~~i~~~l~~~~-~~-~~~l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      .++..++..+-.++-.++.|.++|+-|+||-++... ++..+.+.+..+. ++ ++...+.-++.-++.+.......+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666666777788999999999999887776544 4444455555443 33 33333444444456666777788899


Q ss_pred             cccCCcccc--------------------------hhhhhHHHHHHHHHHHHHHHhhcccccCCc-----h--hHHHHHH
Q 011275          167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----W--WRICFWV  213 (489)
Q Consensus       167 ~e~~p~~~R--------------------------g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~--wr~~f~~  213 (489)
                      .|+.+++.+                          ++.++.-.....+|.++..++...+....+     .  -|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999999988                          888887766666665555554433211111     1  3666655


Q ss_pred             HHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011275          214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++--+++ +...+++||.|+-    +..++..+.+         .....++.+          .+++..+.++....++
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~----~~~~~~~~~~---------~~g~~~l~~----------t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGP----RPLPSGSSYL---------RFGFKRLWR----------TFKEIRKLRQLFLFLI  288 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC----CCCCcchhHH---------HHHHHHHHH----------HHHHHHhChHHHHHHH
Confidence            44333333 3334556665431    0001101000         011111111          1222222333333333


Q ss_pred             HHHHHHHHhhhhHHHHHHhHH-HHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCc--hhHHHhhHHHHHHHH
Q 011275          293 GSTLFALQQLSGINAIFYFSS-SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMA  366 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~  366 (489)
                      +.+++.-    +.+.+..... ...+..+++..   ...+...+..++|+++.+++.||+|.|  +++........+..+
T Consensus       289 a~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  289 AYFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            3333321    2222222111 11224555433   455666788999999999999999999  666555444322222


Q ss_pred             HHHH--Hhhcc-CCCchhhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          367 IQVA--ASSSY-IPGSASLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       367 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      ....  ..... ..+....++.  ..   ..+..+ +..+....+.+|+.|++..+.-.|+....++..++++|.+++.+
T Consensus       365 ~g~~G~~~~~~g~~~~~~f~~~--a~---~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWEFWVL--AV---LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHhhhcccCcccHHHHHHH--HH---HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  11110 1111222211  11   111222 23456778999999999999999999999999999999999998


Q ss_pred             HHHhC-CchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          443 LEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       443 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                      .+..+ .+..+....++.+++.+++ ..+++.|++.
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            88776 4567777777777776665 5677777764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.69  E-value=3e-15  Score=151.81  Aligned_cols=346  Identities=12%  Similarity=0.042  Sum_probs=182.8

Q ss_pred             eeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh----cchh-hHHHHHhHHHHHHHHHHHHhcch--
Q 011275           69 VVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIGASISATTRN--  140 (489)
Q Consensus        69 ~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GR-r~~~~~~~~~~~i~~~l~~~~~~--  140 (489)
                      .+++.++.+.. .+|++  ....|.+....-+--++..++.|.++|    |+|| ||.++.+.+..+++..+.-..++  
T Consensus        24 ~~~~~l~~yyt~v~Gls--~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~  101 (473)
T PRK10429         24 IVYMYLMYYYTDVVGLS--VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFE  101 (473)
T ss_pred             HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence            33444443433 34665  445677777777788899999999999    6799 66666777777776555543331  


Q ss_pred             ----HHHHHHHHHHHhhhcccccccccchhcccC-CcccchhhhhHHHHHHHHHHHHHHHhhccc----c--cCCchhHH
Q 011275          141 ----LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV----K--EIAGWWRI  209 (489)
Q Consensus       141 ----~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~----~--~~~~~wr~  209 (489)
                          +..+++.-++.+++.........++..|+. +++||.+..++-.....+|..+.+.+..++    .  +....|++
T Consensus       102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~  181 (473)
T PRK10429        102 GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQM  181 (473)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence                334555666667777777777778889999 589999988886555555533332222111    1  11112566


Q ss_pred             HHHHHHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011275          210 CFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      ..++.++..++.. +..+..+|.++    ..+.++                       .++++......++.++++++++
T Consensus       182 ~~~i~~~~~~~~~~~~~~~~~e~~~----~~~~~~-----------------------~~~~~~~~~~~~~~~~~n~~~~  234 (473)
T PRK10429        182 FTLVLIAFFIVSTIITLRNVHEVYS----SDNQVS-----------------------AEGSHLTLKDIVALIYKNDQLS  234 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcCceecCC----cccccc-----------------------ccccCCCHHHHHHHHhcCHHHH
Confidence            6555444333322 22333455321    000000                       0000000111233345566665


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHH
Q 011275          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  368 (489)
                      ..+...++.............||..+..+. ....+.......++.+++.++.+++.||+|+|+.+..+.....++....
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            554443333222111111112222211111 0011233344457788888999999999999998877665444443332


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011275          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      ..... ..+..  .+..+....+...+.+. ..+..+.+.+|..+       .+..|...|....+..++..+++.+.+.
T Consensus       314 ~~~~~-~~~~~--~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~  389 (473)
T PRK10429        314 LLMGL-AAPHN--ALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV  389 (473)
T ss_pred             HHHhc-cCchh--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111 11111  11111111222222221 22345567788854       3334557788888888999999988888


Q ss_pred             HHHHhCC
Q 011275          442 LLEQLGP  448 (489)
Q Consensus       442 ~~~~~g~  448 (489)
                      +++..|+
T Consensus       390 ~l~~~Gy  396 (473)
T PRK10429        390 VLGLIGY  396 (473)
T ss_pred             HHHHcCC
Confidence            7776554

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=1.5e-14  Score=145.89  Aligned_cols=328  Identities=14%  Similarity=0.132  Sum_probs=174.4

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc----hhhHHH-HHhHHHHHHHHHHHH-h----cch--HHH
Q 011275           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIGASISA-T----TRN--LIG  143 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~----GRr~~~-~~~~~~~~i~~~l~~-~----~~~--~~~  143 (489)
                      .+.+.+|++  ..+.|.+.+...+..++..++.|.++||.    |||+.+ ..+.+...+...+.. .    ..+  ...
T Consensus        34 y~~~~~gl~--~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         34 YYTDVAGVG--AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            444555765  45678999999999999999999999986    777755 455554444444432 1    111  222


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCCc-ccchhhhhHHHHHHH-----HHHHHHHHhhcccccC-C-ch--hHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATC-----LGLMGSLLIGIPVKEI-A-GW--WRICFWV  213 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~~~~-----~G~~~~~~~~~~~~~~-~-~~--wr~~f~~  213 (489)
                      .+..-++.+++.+...+....+..|..++ ++|.+..++-..+..     ++..++|+++...... . ++  |+..+  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~--  189 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL--  189 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH--
Confidence            34445667777777766666666776654 678887766554323     3444555554322111 1 11  33222  


Q ss_pred             HHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011275          214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                       .+...+. .+.....+|++.    + +.                            ++......++.+++++++.....
T Consensus       190 -~v~~~~~~~~~~~~~~e~~~----~-~~----------------------------~~~~~~~~~~~l~~n~~f~~~~~  235 (448)
T PRK09848        190 -AIAGMVLYFICFKSTRENVV----R-IV----------------------------AQPSLKISLQTLKRNRPLFMLCI  235 (448)
T ss_pred             -HHHHHHHHHHHHcCcEeccC----C-Cc----------------------------cCCCHHHHHHHHhCCchHHHHHH
Confidence             1222222 222233455421    0 00                            00001122455677777766554


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011275          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      ..++............++|..+.++......++......++.+++.++.+++.||+|+|+.+..+.....++...+....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~  315 (448)
T PRK09848        236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS  315 (448)
T ss_pred             HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            44433322222112222333222221111111222333456778888999999999999998888766665554433211


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCch-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR-------IRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (489)
                          ...  .+.......+..++.... .+......+|..|.+       .+|...|+.+....++..+++.+.+.+++.
T Consensus       316 ----~~~--~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        316 ----VWS--LPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             ----chh--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111  111111122222222221 234455667776543       468899999999999999998887777765


Q ss_pred             hCC
Q 011275          446 LGP  448 (489)
Q Consensus       446 ~g~  448 (489)
                      .|+
T Consensus       389 ~G~  391 (448)
T PRK09848        389 SGY  391 (448)
T ss_pred             cCC
Confidence            553

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.68  E-value=2.5e-14  Score=143.31  Aligned_cols=331  Identities=16%  Similarity=0.190  Sum_probs=209.7

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh----cchhhHHHH-HhHHHHHHHHHHHHhc-c-------hHHH
Q 011275           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQ-LCALPMIIGASISATT-R-------NLIG  143 (489)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~-~~~~~~~i~~~l~~~~-~-------~~~~  143 (489)
                      +.+.++++.  ...|.+....-+-.++-.++.|.++|    |+|||+.++ .+.+..+++.++.... +       ....
T Consensus        28 ~~~~~gl~~--~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   28 YTDVLGLSP--ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHcCCCH--HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            344446653  34566666666666788889999999    899776655 5677777777776655 3       2334


Q ss_pred             HHHHHHHHhhhcccccccccchhcccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCc------hhHHHHHHHHH
Q 011275          144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVSIV  216 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~------~wr~~f~~~~~  216 (489)
                      +.+.-++..++.........++..|+.+ +++|.+..++-..+..+|.++...+...+.+..+      .|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            5667777788888888888889999998 5789999999888888887544444333221111      37888776555


Q ss_pred             HHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011275          217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+. .+..+|.+      ++.++                        ++++.+-...+++++++|+++......+
T Consensus       186 v~~v~~~i~~~~~ke~~------~~~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~  235 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERS------VEVTE------------------------QEKKISLRDSLRSLFRNRPFRILLLAFF  235 (428)
T ss_pred             HHHHHhhhhhheeeecc------ccccc------------------------cccccccccchhhhcccchHHHHHHHHH
Confidence            55544333 34455510      00000                        0111112234566777888887776665


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011275          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  375 (489)
                      +.............||..+..+..+ ..+.......++.+++.++.++++||+|+|+....+....+++.........  
T Consensus       236 ~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--  312 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--  312 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence            5544443333444566655555442 2344555667888899999999999999999988887777776665544431  


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-------RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                        +..  +.......+.+++.+ .....++.+.+|+.+.       +..|...|+.+....++..+++.+.+.+++..|
T Consensus       313 --~~~--~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  313 --GSP--WLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             --hhH--HHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence              111  111112222222222 2235677788888863       446888899899999999999988777776554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.3e-15  Score=134.69  Aligned_cols=356  Identities=17%  Similarity=0.092  Sum_probs=192.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHH---hcchHHHHHHHHHH
Q 011275           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISA---TTRNLIGMLLGRFV  150 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~---~~~~~~~l~~~R~l  150 (489)
                      .++.+|.++..+  +..++-+.|.+--.+-.++.|++.|| +|-|..-++-++...+|.++.+   ..+.+|.+.++|++
T Consensus        68 ~~fk~d~ni~~a--kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~  145 (459)
T KOG4686|consen   68 IDFKLDSNIEYA--KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFL  145 (459)
T ss_pred             hhhhccccccee--eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhee
Confidence            344445444433  34577788888888889999999995 7777655555555556666554   57899999999999


Q ss_pred             HhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC----Cch-hHHHHHHHHHHHHHHHHHh
Q 011275          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI----AGW-WRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~-wr~~f~~~~~~~~~~~~~~  225 (489)
                      .|+|.--.......|+.-|+..+|-+.+.++......+|...-..+..++.+.    .+. =+...-+-.......+.. 
T Consensus       146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~-  224 (459)
T KOG4686|consen  146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ-  224 (459)
T ss_pred             eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-
Confidence            99998777778889999999999999999998777777754322221111110    000 000000000000000000 


Q ss_pred             hcccCChHHHHhcCC-HHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhh-hccchhHHHHHHHHHHHHhhh
Q 011275          226 VFCAESPHWLYKKGR-TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLS  303 (489)
Q Consensus       226 ~~~pEsp~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  303 (489)
                           |-.-....+- ++++++.+.+                 ++....+..+..+.. ..+++|.+...++++....+.
T Consensus       225 -----slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fP  282 (459)
T KOG4686|consen  225 -----SLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFP  282 (459)
T ss_pred             -----HHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCcccccccccCccHHHHHHHHHHHHHHHHH
Confidence                 0000000111 1122221111                 111111112222221 236677766666665544332


Q ss_pred             hHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHH-HHHHHHHHHHHhhccCCCchhh
Q 011275          304 GINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .+..-..+.+.-++.+..+++...........+.+++.|.++||+|++...+.+... ..++...+.+.       ...+
T Consensus       283 Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------~lsP  355 (459)
T KOG4686|consen  283 FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------FLSP  355 (459)
T ss_pred             HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------hccH
Confidence            222222222222222333344445555566778888999999999999766544222 22222222211       1112


Q ss_pred             HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C---chhHHHHHHH
Q 011275          383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-P---QLLYSIFGTF  458 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~---~~~~~~~~~~  458 (489)
                      +..   +.+.+..+++-.. .-|..++-+.|.+.-||+.|++.++++++-.+.|.+.+.+.|+-| +   ...|.+.+.+
T Consensus       356 y~~---m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~  431 (459)
T KOG4686|consen  356 YTS---MTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM  431 (459)
T ss_pred             HHH---HHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence            222   2222222222111 124456677899999999999999999999999988777776544 2   2344445555


Q ss_pred             HHHHHHHH
Q 011275          459 CLMAVAFV  466 (489)
Q Consensus       459 ~~~~~~~~  466 (489)
                      ++.....+
T Consensus       432 aL~svgil  439 (459)
T KOG4686|consen  432 ALTSVGIL  439 (459)
T ss_pred             HHHHHHHH
Confidence            55554444

>PRK11462 putative transporter; Provisional

Probab=99.65  E-value=9.1e-14  Score=140.05  Aligned_cols=325  Identities=16%  Similarity=0.106  Sum_probs=175.5

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc----chhhHHHH-HhHHHHHHHHHHHHhcch------HHHHHHHH
Q 011275           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQ-LCALPMIIGASISATTRN------LIGMLLGR  148 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~~~-~~~~~~~i~~~l~~~~~~------~~~l~~~R  148 (489)
                      .+|++  ....|.+....-+--++..++.|.++||    +|||+.++ ++.+.++++..+.-..++      ...+.+.-
T Consensus        39 ~~Gl~--~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~  116 (460)
T PRK11462         39 IFGIP--AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY  116 (460)
T ss_pred             hhCCC--HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            34554  4445666666666667999999999995    79876554 565677776666544442      33445555


Q ss_pred             HHHhhhcccccccccchhcccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCC------chhHHHHHHHHHHHHHH
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------GWWRICFWVSIVPAAIL  221 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~------~~wr~~f~~~~~~~~~~  221 (489)
                      ++..++.........++..|+.+ ++||.+.+++...+..+|..+++++..++....      ..|+....+.+++.++.
T Consensus       117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~  196 (460)
T PRK11462        117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM  196 (460)
T ss_pred             HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            66677777766677778899997 789999999998888887665555433321111      12565555444443333


Q ss_pred             HHH-hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011275          222 CLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       222 ~~~-~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .++ ....+|.++     .+ ++                           +......++..+++++++.......+....
T Consensus       197 ~~i~~~~~kE~~~-----~~-~~---------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~  243 (460)
T PRK11462        197 LAFCFFTTKERVE-----AP-PT---------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNILA  243 (460)
T ss_pred             HHHHHhcceeccC-----CC-cc---------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            322 222333210     00 00                           000011234456666666554433333222


Q ss_pred             hhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011275          301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .........||..+.++... ..+.......++.+++.++++++.||+++|+....+.....+...+.....     ...
T Consensus       244 ~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-----~~~  317 (460)
T PRK11462        244 VCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-----MQA  317 (460)
T ss_pred             HHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-----hhH
Confidence            22222223344443332211 112344556678888999999999999999876544333332222221111     111


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCC-----chhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011275          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-----SRIRAKAM--AVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g  447 (489)
                      .....+ ..++..+.. ....++.+.+.+|...     +..|..+.  +....+.+++..+++.+.+.+++..|
T Consensus       318 ~~~~~~-~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        318 SITMFV-FIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHH-HHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111111 111222221 1223444556666644     33555554  55558888999888888777776544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=1.1e-15  Score=155.85  Aligned_cols=180  Identities=16%  Similarity=0.104  Sum_probs=128.7

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH---HHhcchHHHHHH
Q 011275           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLL  146 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~  146 (489)
                      ...+|.+. +++|++.+  +.++......++..++.++.|+++||+|||+++..+.++..++...   ...+.+...+++
T Consensus       270 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (490)
T PRK10642        270 LTYMPSYLSHNLHYSED--HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA  347 (490)
T ss_pred             HHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34566655 45676543  3456677788899999999999999999999988877654443332   223456777888


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~  225 (489)
                      +|++.|++.+........++.|++|++.||...++ ++.+...|.+.+.+.+ .+.+..++|+.+++...++.++..+..
T Consensus       348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g-~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA-WLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            99999988776666677788999999999998886 6666555544444443 333333346777666556666666666


Q ss_pred             hcccCChHHHHhc-----CCHHHHHHHHHHHhC
Q 011275          226 VFCAESPHWLYKK-----GRTAEAEAEFEKLLG  253 (489)
Q Consensus       226 ~~~pEsp~~l~~~-----~~~~~~~~~l~~~~~  253 (489)
                      +++||||+|+..+     +|.+|+++.+++++.
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            7789999998755     888999999888763

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=7.1e-13  Score=125.72  Aligned_cols=398  Identities=15%  Similarity=0.118  Sum_probs=236.0

Q ss_pred             CCcchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH
Q 011275           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        44 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      +.++++|..++..++-++.-+.+.--+++....+..-++ +.+  ..-|..-+|.+-+..-.+..-|+.||+|-|...++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~--~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSS--AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chH--HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            456666666666666666655544333333333444444 222  23467777888888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcc------hHH--HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHH
Q 011275          124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~~------~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  195 (489)
                      +..+.++|+.+-..+.      .++  ....+..+.+.+.-........+..-|+|+++|..+...-.++..+|...+.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999998866543      334  56678888887776666666678888999999999999988888888777777


Q ss_pred             hhcccccCC-----chhHH--HHHH-HHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 011275          196 IGIPVKEIA-----GWWRI--CFWV-SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (489)
Q Consensus       196 ~~~~~~~~~-----~~wr~--~f~~-~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (489)
                      +...+....     ..|..  +|+. .++..+.+.+..+..+|.|+.     .+..+.+.                    
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~--------------------  249 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAA--------------------  249 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhh--------------------
Confidence            654443222     11443  3442 222222222233334443321     11111000                    


Q ss_pred             ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH---hcCCCcchHHHHHHHHHHHHHHHHHHH
Q 011275          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVL  344 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~g~~~~g~l  344 (489)
                      ++ +..-..+.+++++++++-...+....-    ...++..++.....+.   ..+...|.......++..+++.+.|.+
T Consensus       250 ~~-~~~f~~si~~~~~n~~F~il~~~ygi~----~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  250 LQ-DASFPKSIKSCFKNRQFIILAICYGIG----LGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             hh-cCcHHHHHHHHHcCccHHHHHHHHhhh----HHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence            00 111234567788888776554432221    1112233322221222   233456778888888999999999999


Q ss_pred             HhhcCCchh-HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011275          345 MDKLGRKAL-LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       345 ~dr~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      .||...-+. .........++. +...............+.    .+.....+..+..|+...+..|..-+..=++..|+
T Consensus       325 ~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~~~~viv~~----t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl  399 (480)
T KOG2563|consen  325 ADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFLGDSVIVFT----TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL  399 (480)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccCCceEehhh----hHHHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence            999876443 333333333332 111111111111111111    11222234556778888888888877788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC----CchhHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 011275          424 CMSVHWVINFFVGLLFLRLLEQLG----PQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ  479 (489)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~  479 (489)
                      .+..+.+.+++..+......+..+    +...-..+...++....+..+..|+-|++..|
T Consensus       400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e  459 (480)
T KOG2563|consen  400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE  459 (480)
T ss_pred             EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence            999999988888887777666655    33334455556666666665556655555444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.59  E-value=1e-13  Score=132.04  Aligned_cols=274  Identities=16%  Similarity=0.131  Sum_probs=161.4

Q ss_pred             HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC------------
Q 011275          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------------  203 (489)
Q Consensus       136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~------------  203 (489)
                      +...+|+.++++-++.|.|.+...+....|++++.|++++++.+++.+..+.+|.+++|+++..+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999987654311            


Q ss_pred             ---CchhHHHHHHHHHHHHHHHHHhh--cccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH
Q 011275          204 ---AGWWRICFWVSIVPAAILCLAMV--FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF  278 (489)
Q Consensus       204 ---~~~wr~~f~~~~~~~~~~~~~~~--~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (489)
                         ..+|+++++..+....+..+.+.  -.||..      ++.++  +.                    .+++.   .+.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~--~~--------------------~~~~~---~~~  133 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVA--RV--------------------SSGDT---TQK  133 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------ccccc--cc--------------------ccccc---cch
Confidence               13589998854333232222222  245431      00000  00                    00000   001


Q ss_pred             HHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh---cCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 011275          279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKA  352 (489)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~  352 (489)
                      ++.+++++.+...+..+++.....    ....|.+.++.+   .+.+.   +........+..+|.++++++.||+|+|+
T Consensus       134 ~~~~~~~~~~l~~~~~f~yvg~e~----~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~  209 (310)
T TIGR01272       134 TSAFQFTHLVLGALGIFVYVGAEV----SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR  209 (310)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            123333444433332223221111    122223333322   24432   34556677888899999999999999998


Q ss_pred             hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHH
Q 011275          353 LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN  432 (489)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  432 (489)
                      .+..+.....+...+....     ......+    .....+++. ....|.......+.+|++ .+++.++. ..+.+|+
T Consensus       210 ~l~~~~~l~~~~~~l~~~~-----~~~~~~~----~~~l~g~~~-s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg  277 (310)
T TIGR01272       210 YLAFNAFLAVLLSIGAALT-----HGYVAMW----FVLALGLFN-SIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGG  277 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHH-HHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcc
Confidence            8776655554443222211     1111111    111122111 122344444566666643 45566664 6788899


Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHH
Q 011275          433 FFVGLLFLRLLEQLGPQLLYSIFG  456 (489)
Q Consensus       433 ~~~~~~~~~~~~~~g~~~~~~~~~  456 (489)
                      .+.|.+.+.+.|..|...+|.+..
T Consensus       278 ~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       278 AIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             hHHHHHHHHHHHhccchHHHHHHH
Confidence            999999998888888777765433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.58  E-value=2.2e-14  Score=138.13  Aligned_cols=369  Identities=19%  Similarity=0.196  Sum_probs=183.7

Q ss_pred             ceeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHH--HHHHHH-Hh----c
Q 011275           67 LGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI--IGASIS-AT----T  138 (489)
Q Consensus        67 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~--i~~~l~-~~----~  138 (489)
                      .++..+..+-..+| .|++.+  +.|.+.+...+...+.+++.|.++||.|.|+-++..+.+..  .+.... .+    .
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~--~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGT--EIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHH--HHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566655554 677644  66999999999999999999999999996665544332221  122211 11    1


Q ss_pred             chHH-HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011275          139 RNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       139 ~~~~-~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~  217 (489)
                      .|.. ..+++-+..|+...+..++.-+|+.++...+  +.=-+-.-+..++|..++..+++.+.+..  -+..||+....
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~i~--p~~~fwi~s~~  176 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFNIN--PNIIFWIASAA  176 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeeeeC--ccHHHHHHHHH
Confidence            2221 2223333333333334444444443333211  11122223444455444444444333221  36677775554


Q ss_pred             HHHHHHHhhc-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011275          218 AAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~~~~~-~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      +++..++.++ -|+.++.    .+.+++                     ...++++.+.....++++.++++...+....
T Consensus       177 ~~il~lll~~~~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g  231 (412)
T PF01306_consen  177 AIILLLLLLLLKPDVPPQ----AEVADA---------------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIG  231 (412)
T ss_dssp             HHHHHHHHHSS---SSSS----S-SSTT---------------------SSS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCchh----hhhhcc---------------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence            4444443333 2332210    000000                     0000001111224566777777665432221


Q ss_pred             HHHHhhhhH-HHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011275          297 FALQQLSGI-NAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       297 ~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      ... .+..+ ...+.|....++..+.+   .|.....--+.+.+...+..++.+|+|.|+.++++...+.+=....... 
T Consensus       232 ~~~-~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-  309 (412)
T PF01306_consen  232 VAA-IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-  309 (412)
T ss_dssp             HHH-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHH-HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-
Confidence            111 00000 01111111111111111   2334444557788888899999999999998877655444333222211 


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchh
Q 011275          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~  451 (489)
                          ++   .+.....-++-+..+.+..-.. .-|+++.+|++..++...+.. ....++..+.+...+.++|+.|...+
T Consensus       310 ----~~---~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~t  381 (412)
T PF01306_consen  310 ----TN---PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHT  381 (412)
T ss_dssp             -----S---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cc---hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHH
Confidence                11   1111222233333332221112 238899999999999999874 44666777888888999999999889


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCC
Q 011275          452 YSIFGTFCLMAVAFVKRNVVETKGK  476 (489)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~pet~~~  476 (489)
                      |.+++.+.+...++..+.+++.|..
T Consensus       382 ylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  382 YLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHHheeeecCCCcc
Confidence            9999998887777777777766654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.7e-12  Score=126.41  Aligned_cols=325  Identities=19%  Similarity=0.177  Sum_probs=193.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhc----chhhHH-HHHhHHHHHHHHHHHHhcch------HHHHHHHHHHHhhhc
Q 011275           87 TLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRA-FQLCALPMIIGASISATTRN------LIGMLLGRFVVGTGM  155 (489)
Q Consensus        87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~-~~~~~~~~~i~~~l~~~~~~------~~~l~~~R~l~G~g~  155 (489)
                      ....|.+....-+--++.-++.|.++||    +|||+. ++++.+.+++.+.++-.+++      ....++.-.+.+++.
T Consensus        47 ~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~Y  126 (467)
T COG2211          47 AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGY  126 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHH
Confidence            3344555555555567899999999994    887555 55666888888888877764      334556678888888


Q ss_pred             ccccccccchhcccCC-cccchhhhhHHHHHHHHHHHHHHHh-----hccccc--CCchhHHHHHHHHHHHHHHHHHhh-
Q 011275          156 GLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKE--IAGWWRICFWVSIVPAAILCLAMV-  226 (489)
Q Consensus       156 g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~-----~~~~~~--~~~~wr~~f~~~~~~~~~~~~~~~-  226 (489)
                      ........++.+|+.+ ++||.+..++-..+..+|.++..+.     ...-.+  ..+ |+..-++..+.+++..+..+ 
T Consensus       127 T~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~~vi~~i~~l~~~~  205 (467)
T COG2211         127 TLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVLGVIGVILLLFCFF  205 (467)
T ss_pred             HheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            8877777788899885 6889999999988888885443333     222222  123 45554443333333333322 


Q ss_pred             cccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhcc-CCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011275          227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR-GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       227 ~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      -+.|         |..+...                    .+. .+......+..++++|+++.......+.......-.
T Consensus       206 ~v~E---------R~~~~~~--------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~  256 (467)
T COG2211         206 NVKE---------RVVETQP--------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRG  256 (467)
T ss_pred             Hhhc---------ccCcccc--------------------CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHh
Confidence            2222         2111000                    000 000011123456778887776653333332222212


Q ss_pred             HHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHH
Q 011275          306 NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  385 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                      ....||..+.++...............+.+.+.++..++.+|+|+|++..++.++..++..++.+.+.    +.  ..+.
T Consensus       257 s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~--~~l~  330 (467)
T COG2211         257 SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GS--VVLI  330 (467)
T ss_pred             hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cc--hHHH
Confidence            23345554444443333444555566677777899999999999999999887777777666554431    11  1122


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011275          386 VGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  448 (489)
                      +...++...+ .....+++|.+.+|...       .+.-|...+....+..++..+++++.+..+...|+
T Consensus       331 ~~~~~i~~~g-~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         331 VVALIIAGVG-TGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHH-hhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            2222222222 22346788888888754       33446667778888888999999888887776654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.50  E-value=9.9e-13  Score=128.31  Aligned_cols=152  Identities=22%  Similarity=0.242  Sum_probs=121.0

Q ss_pred             CCCCcchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchh-hHH
Q 011275           42 TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRA  120 (489)
Q Consensus        42 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~  120 (489)
                      .+++||.    +.+..+.+++.+.+.+++.+......++++.+.+..-.|++.++..+|..++++.+|....|.|. |+.
T Consensus        29 ~~t~wrs----i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P  104 (488)
T KOG2325|consen   29 RKTNWRS----IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP  104 (488)
T ss_pred             cCCchHh----HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC
Confidence            3455653    45666777888888888888776667776666666667999999999999999999999999995 666


Q ss_pred             HHHhHHHHHHHHHHHH-h---cc-hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHH
Q 011275          121 FQLCALPMIIGASISA-T---TR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (489)
Q Consensus       121 ~~~~~~~~~i~~~l~~-~---~~-~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~  195 (489)
                      ++.+.++..+|+++.. +   .+ .-+.++++|++.|+|.|... +...|+++-...++|-++.+....+..+|..+||.
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            6688888889988873 2   23 56788999999999977554 67789999999999999999888877777777777


Q ss_pred             hhc
Q 011275          196 IGI  198 (489)
Q Consensus       196 ~~~  198 (489)
                      ++.
T Consensus       184 ~q~  186 (488)
T KOG2325|consen  184 IQL  186 (488)
T ss_pred             HHH
Confidence            654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.47  E-value=5.5e-11  Score=112.53  Aligned_cols=350  Identities=15%  Similarity=0.149  Sum_probs=191.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhH-HHHHHHHHHHHhcch--HHH-HHHHHHHHhhhccccccccc
Q 011275           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA-LPMIIGASISATTRN--LIG-MLLGRFVVGTGMGLGPTVAA  163 (489)
Q Consensus        88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~-~~~~i~~~l~~~~~~--~~~-l~~~R~l~G~g~g~~~~~~~  163 (489)
                      ..++...++..+-.++-+++.|.++|+.|+||...... .+..+...+..++++  ++. .++.-.+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            34566666777777788999999999999877765443 334444444555544  443 44566777788778888888


Q ss_pred             chhcccCCcccchhhhhHHHHHHHHHHHHHHHhh---cccc---------------cCCchhHHHHHHHHHHHHHHHH-H
Q 011275          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG---IPVK---------------EIAGWWRICFWVSIVPAAILCL-A  224 (489)
Q Consensus       164 ~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~---~~~~---------------~~~~~wr~~f~~~~~~~~~~~~-~  224 (489)
                      +++.+..++++-++.++.-.....+|..+..+..   ....               +... =|..+.+.++--++..+ .
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhHH
Confidence            8999999998888877664433333432222221   0001               1111 35555543332222222 2


Q ss_pred             hhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011275          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (489)
Q Consensus       225 ~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (489)
                      ++.+++.++     .+..+. +         ...+...++.          .++++..+.+.....+++.+++.-    +
T Consensus       217 ~~~v~~~~~-----~~~~~~-~---------~l~~g~k~L~----------~t~k~i~~~~~i~~FLiA~~~~~D----G  267 (438)
T COG2270         217 ILNVHDAEK-----ISSPPP-T---------ALRNGFKELK----------STFKEIRGRKNLVLFLIARFFYID----G  267 (438)
T ss_pred             Hhccccccc-----ccccch-H---------HHHHHHHHHH----------HHHHHHhcccchHHHHHHHHHHHh----h
Confidence            223333321     000000 0         0011111111          123333333433333333333221    2


Q ss_pred             HHHHHH----hHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011275          305 INAIFY----FSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       305 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .+.+..    |....++....+..+..+...+..++|+++.|++.||+|.|+++..+.+...+.++......     ...
T Consensus       268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-----~~~  342 (438)
T COG2270         268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-----GEL  342 (438)
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----ccH
Confidence            222222    22222222222334455667788899999999999999999988777665544443332211     111


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHH
Q 011275          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFGTFC  459 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~  459 (489)
                      ..+.  .+++  ...+..+.......|.+++.|++.-++..|+.+..++..++.+|+.+....+..+. ...+....++.
T Consensus       343 ~f~i--~gll--~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll  418 (438)
T COG2270         343 DFWI--LGLL--VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL  418 (438)
T ss_pred             HHHH--HHHH--HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            1111  1111  11122223345677999999999999999999999999999999998887776554 33444444455


Q ss_pred             HHHHHHHHhhcccCCCCC
Q 011275          460 LMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       460 ~~~~~~~~~~~pet~~~~  477 (489)
                      +++.+. +..+|+.++++
T Consensus       419 ~iGl~~-L~~v~~~~~~~  435 (438)
T COG2270         419 LIGLLL-LLRVKVPGRRE  435 (438)
T ss_pred             HhhHhh-EEeecCCCCcc
Confidence            555443 34566654443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.46  E-value=1.8e-13  Score=114.17  Aligned_cols=135  Identities=21%  Similarity=0.362  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCccc
Q 011275           95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV  174 (489)
Q Consensus        95 s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  174 (489)
                      +.+.++..+++++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34566788899999999999999999999999999999988889999999999999999999988889899999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhcccC
Q 011275          175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAE  230 (489)
Q Consensus       175 Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~pE  230 (489)
                      |++..++......+|..+++.++..+.+..+ |++.+++.....++..+. .+..||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999888888877766656 688887755444444333 334454

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.39  E-value=9.8e-12  Score=122.34  Aligned_cols=225  Identities=14%  Similarity=0.112  Sum_probs=136.9

Q ss_pred             CcccchhhhhhccccccCCCCCccchhhhhccc-cCCcc--c-----CCCCCCcchHHHHHHHHHHHHhhhhccceeecc
Q 011275            1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALV-QNGTE--V-----ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNE   72 (489)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   72 (489)
                      ++||++||++.+++-+..++.+....+..+... .+.++  .     ..++++.|+.....+.+.++..++|.+  .+..
T Consensus       214 ~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~--ai~~  291 (485)
T KOG0569|consen  214 KKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGIN--AIFF  291 (485)
T ss_pred             HcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcc--eeHH
Confidence            379999999999988876654432221111111 11111  0     012333333222233333333444433  3444


Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc---hHH------H
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------G  143 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~---~~~------~  143 (489)
                      .-.++.++.|++.++.+  +.......-..+.++++..+.||+||||.++.+..+..+..++.....   +..      .
T Consensus       292 Yst~i~~~aG~~~~~a~--~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~  369 (485)
T KOG0569|consen  292 YSTSIFKTAGFTPEEAQ--YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL  369 (485)
T ss_pred             HHHHHHHHcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            55678888888766543  445555556678999999999999999999999999888877765431   111      1


Q ss_pred             HHHHHHHHhhhccc-ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-
Q 011275          144 MLLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-  221 (489)
Q Consensus       144 l~~~R~l~G~g~g~-~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-  221 (489)
                      .+++.++..++.+. .-|+..-+.+|++|++.|..+.++......+..++-...-.++.+..|.  ..|++..++..+. 
T Consensus       370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~  447 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFL  447 (485)
T ss_pred             HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHH
Confidence            23444444444332 2456677899999999999999998888888766555554455444442  4555544555444 


Q ss_pred             HHHhhcccCC
Q 011275          222 CLAMVFCAES  231 (489)
Q Consensus       222 ~~~~~~~pEs  231 (489)
                      +..+..+|||
T Consensus       448 i~~~~~lPET  457 (485)
T KOG0569|consen  448 IYLYRYLPET  457 (485)
T ss_pred             HHHHHhCccc
Confidence            4456779999

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.39  E-value=1.7e-10  Score=111.75  Aligned_cols=136  Identities=23%  Similarity=0.309  Sum_probs=108.2

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhhccc
Q 011275           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~  157 (489)
                      +|+++++.  .-+.+.|.-=.=+...+.|+++|| .|+|+++..+.+++.+|.++.+.+.  +...+.++-.+.++|.|.
T Consensus        56 Lg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl  133 (498)
T COG3104          56 LGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL  133 (498)
T ss_pred             CCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence            34654432  233333322223567889999998 7999999999999999999999884  788899999999999999


Q ss_pred             ccccccchhcccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011275          158 GPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      .=+....++.|.+|+++  |....+++.++.++|.+.+|++...+.+..+ |+..|.++.+-..
T Consensus       134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~  196 (498)
T COG3104         134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMI  196 (498)
T ss_pred             ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHH
Confidence            99999999999998644  6677888889999999999999888887777 6888887644333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.37  E-value=2.5e-12  Score=134.57  Aligned_cols=139  Identities=14%  Similarity=0.021  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCC
Q 011275           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (489)
Q Consensus        92 ~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p  171 (489)
                      +...+..++.++|.++.|+++||+|||+++..+.++.+++.++.+++++...+++.+++.|++.++..+....+++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44555668889999999999999999999999999999999999999888888899999999888888888899999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCCh
Q 011275          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (489)
Q Consensus       172 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp  232 (489)
                      .++|++++++......+|.+++|++++.+.+..  ...+|++.++..++..++..++|||.
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999998876554322  35677766555565556666779983

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.27  E-value=5.5e-11  Score=117.81  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=115.8

Q ss_pred             chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 011275           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~  151 (489)
                      ..|.+ .++++.+.  .+.++..+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.|++.
T Consensus       238 ~~p~~l~~~~~~~~--~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        238 NMPLFIINELHLPE--KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45544 35566654  3456666666667788999999999999999988777666555544555667888888899999


Q ss_pred             hhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccC
Q 011275          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pE  230 (489)
                      +++.|...+....+..|.+|+ +||+++++++....+|..+++.+++.+.+..+ |+..|++..+..++.++..++.||
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            888777766677788999885 59999999988889999989888887776655 798988776666665555555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.27  E-value=2.1e-11  Score=119.77  Aligned_cols=143  Identities=17%  Similarity=0.073  Sum_probs=115.6

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHH--HHHHHHHHH
Q 011275           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI--GMLLGRFVV  151 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~--~l~~~R~l~  151 (489)
                      .+.+.++++.+.  .+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++..+....++..  .++...++.
T Consensus       228 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       228 YKPYGQSLGLSD--GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            444566777653  3457788888899999999999999999999999999888888888777766432  344668889


Q ss_pred             hhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011275          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      |++.|...+..+.++.|.+|+++|++..++++....+|..+++.+.+.+.+..+ |++.|++.++..+
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~  372 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFAL  372 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHH
Confidence            998888888888899999999999999999999999999999888877766666 6888877544333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.27  E-value=6.7e-11  Score=114.90  Aligned_cols=154  Identities=23%  Similarity=0.340  Sum_probs=130.4

Q ss_pred             eeccchhhhhhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhH-HHHHhHHHHHHHHHHHHhcchHHHHHH
Q 011275           69 VVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATTRNLIGMLL  146 (489)
Q Consensus        69 ~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~-~~~~~~~~~~i~~~l~~~~~~~~~l~~  146 (489)
                      ......|.+.++. |.+  +.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++....++.+.+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  270 (352)
T cd06174         193 GLLTYLPLYLQEVLGLS--AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV  270 (352)
T ss_pred             HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3444566666664 544  445678888999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~  225 (489)
                      ..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.+.+..+ |++.+++..+..++..+..
T Consensus       271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999989888877766555 6888887666655554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.27  E-value=4.8e-11  Score=118.55  Aligned_cols=151  Identities=16%  Similarity=0.088  Sum_probs=117.5

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHh
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      .++.+..+.+.+    +.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++.+.+++.+++.|
T Consensus       238 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        238 FITLYYAARGWD----GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHcccc----cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344444555542    2245566778888899999999999999999999988888888888888888888888999999


Q ss_pred             hhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 011275          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      ++.+...+.....+.|..|+++||+..++++....+|..+++.+.+.+.+..+ |++.|++.....++..+...+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99988887777778899999999999999999999997766666666655556 6888887655555544444333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.26  E-value=2.4e-11  Score=121.14  Aligned_cols=143  Identities=14%  Similarity=0.154  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc----hHHHHHHHHHHHhhhcccccccccc
Q 011275           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~----~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      ..+...+...++..++.++.|+++||+|||+++..+.++.+++..+.....    ++..+++.+++.|++.+...+....
T Consensus       252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~  331 (418)
T TIGR00889       252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV  331 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347778888888889999999999999999999999999888876666532    2456677899999999888888888


Q ss_pred             hhcccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc-----hhHHHHHHHHHHHHHH-HHHhhcccCC
Q 011275          165 YVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSIVPAAIL-CLAMVFCAES  231 (489)
Q Consensus       165 ~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~-----~wr~~f~~~~~~~~~~-~~~~~~~pEs  231 (489)
                      +++|++|+++||+..++++ ....+|..+|+++++.+.+..+     .|+..|++.++..++. .+..++++|+
T Consensus       332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999997 6788899889988887665432     2798887754444433 3444556666

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.25  E-value=1.9e-09  Score=106.84  Aligned_cols=311  Identities=17%  Similarity=0.195  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc--cccccccchhcccCCcccc
Q 011275           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTEVSPPFVR  175 (489)
Q Consensus        98 ~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g--~~~~~~~~~i~e~~p~~~R  175 (489)
                      .+...+.++..|.++||+|||..+.+......+......+.. ++ +++   +.|+..+  .......+|++|....++|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHH
Confidence            456678899999999999999999999888877777666655 33 333   5555443  4556777899999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCC
Q 011275          176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (489)
Q Consensus       176 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~  254 (489)
                      ....++.......+..++|.++..+....+. -.+|.++....++. .....++||+-+   .+.+++   ...++....
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~-a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~---~~~~~~~~~  219 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGI-ALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD---ATLRELTPG  219 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhhccccccC---cccccc---ccccccCCC
Confidence            9999999998888988888888766554443 55666654444443 344567898832   111111   000000000


Q ss_pred             CchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH---HHHHHHHHHHhhhhHH-HHHHhHHHHHHhcCCCcchHHHHH
Q 011275          255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV---FIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFV  330 (489)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  330 (489)
                      .......             ...+....+.++.+..   ....+........+.. ..++|....++......+......
T Consensus       220 ~~~~~~~-------------~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~  286 (463)
T KOG2816|consen  220 SLDSSHV-------------ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLV  286 (463)
T ss_pred             cccchhh-------------hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHH
Confidence            0000000             0001111111111111   1111111111111101 112222222221111122233444


Q ss_pred             HHHHHHHHHHHH-HHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011275          331 GIANLLGSVVAM-VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  409 (489)
Q Consensus       331 ~i~~~~g~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      .+...++.++.. .+...+|-|+.+..|.....+......+...     .+..+...     ....++....|......+
T Consensus       287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~-----~w~~~~~~-----v~~~~~~~~~pa~~s~~s  356 (463)
T KOG2816|consen  287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE-----TWMMFAAG-----VVVALAGIVFPAIRAFAS  356 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc-----chhhhHHH-----HHHHhhcchhHHHHhHHH
Confidence            455556665555 6778889888777776666665555544321     12222211     112233344566667788


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      -+.+++.+|+.+++...+..+.+.+.|..++.++
T Consensus       357 ~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  357 ILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            8889999999999999999999999998877664

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.24  E-value=1e-10  Score=116.50  Aligned_cols=152  Identities=24%  Similarity=0.200  Sum_probs=121.2

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHh
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.++.|.+.+  +.+...+.+.++..++.++.|+++||+|||+.+..+.+...++..+....++.+.+.+.-++.|
T Consensus       242 ~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (406)
T PRK11551        242 WLPSLLVGQGLSRS--QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG  319 (406)
T ss_pred             HHHHHHHhCCCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45777778777644  4577888888899999999999999999999998877776676666677778877778888889


Q ss_pred             hhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011275          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (489)
                      ++.++..+....++.|.+|+++||+..++++....+|..+++.+++.+.+..++|...++......++..+..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            88877777888899999999999999999999999999999998888776655577777665444444434333

>PRK12382 putative transporter; Provisional

Probab=99.22  E-value=8.4e-11  Score=116.53  Aligned_cols=147  Identities=17%  Similarity=0.138  Sum_probs=118.8

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHh
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.++.+.+.    .++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++...+.+.+++.|
T Consensus       238 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        238 FVSLYFASKGWAM----AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3444555555432    345566677788899999999999999999999998888888888888888888888999999


Q ss_pred             hhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      ++.+...+.....+.|.+|+++||+..++++....+|..+++.+.+.+.+..+ |+..|++.....++..+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHH
Confidence            99988888777888999999999999999999999998888888877777666 698888765555444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.22  E-value=2.2e-10  Score=117.27  Aligned_cols=161  Identities=11%  Similarity=0.003  Sum_probs=98.9

Q ss_pred             cchhhhhhhcCCCCchhH---------HHH-HHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc--
Q 011275           72 EPLESISLDLGFNGNTLA---------EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--  139 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~---------~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--  139 (489)
                      ...|.+.++.|++.++..         ... ......++..+|.++.++++||+|||+++..+..+.+++..+.+...  
T Consensus       309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~  388 (502)
T TIGR00887       309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH  388 (502)
T ss_pred             cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            346777778887643210         001 22334456667889999999999999999888877776665554432  


Q ss_pred             --hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC---------chhH
Q 011275          140 --NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------GWWR  208 (489)
Q Consensus       140 --~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~---------~~wr  208 (489)
                        +...+...=+...++..+..+....+.+|.+|.+.|++..++.+....+|.++++.+...+.+..         -++.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  468 (502)
T TIGR00887       389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG  468 (502)
T ss_pred             cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence              11111111111222222334456677899999999999999999999898888877665544421         1124


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCh
Q 011275          209 ICFWVSIVPAAILCLAMVFCAESP  232 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~pEsp  232 (489)
                      ..|++.+...++..+..+++|||.
T Consensus       469 ~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       469 HVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHHHHHheEeccCC
Confidence            455554444444444456779983

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.20  E-value=3.2e-10  Score=115.50  Aligned_cols=158  Identities=17%  Similarity=0.051  Sum_probs=104.4

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc--hHH--HHHH
Q 011275           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI--GMLL  146 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~--~l~~  146 (489)
                      ....|.+.++.|.+.+..  .+......++..++.++.++++||+|||+++..+.++.+++.++.+...  +..  ....
T Consensus       291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344577878888765432  3455556667789999999999999999999999998888877765431  211  2222


Q ss_pred             HHHHHhhhccc-ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhc------ccccCCchhHHHHHHHHHHHH
Q 011275          147 GRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       147 ~R~l~G~g~g~-~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~------~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      .-++.+.+.+. ..+....+++|.+|+++|+.++++......+|..+++.+..      .+.+..+ |++.|++.++..+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~  447 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHH
Confidence            33444444433 23566788999999999999999998888887766543332      2223344 5677766544444


Q ss_pred             HHHH-HhhcccCC
Q 011275          220 ILCL-AMVFCAES  231 (489)
Q Consensus       220 ~~~~-~~~~~pEs  231 (489)
                      +..+ ..++.||+
T Consensus       448 ~~~~~~~~~~~e~  460 (479)
T PRK10077        448 LAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHhccccC
Confidence            4333 34456777

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=3.1e-10  Score=114.57  Aligned_cols=149  Identities=11%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc--chhhHHHHH--hHHHHHHHHHHHHhcchHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr--~GRr~~~~~--~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      ....+|.+.++.|.+.  .+.++..+...++..+++++.|+++||  +++|+...+  +.++.+++.++...+++++.++
T Consensus       260 ~~~~l~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~  337 (455)
T TIGR00892       260 PIIFLVPYAKDKGVDE--YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLV  337 (455)
T ss_pred             hHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            3445666777777653  456788888888889999999999997  344443333  3344445555667788999999


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      +.+++.|++.+...+....++.|.+|+++||+..++++....+|..+|+.+++.+.+..+.|++.|++..+..++
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS  412 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence            999999999998888888899999999999999999999999999999999888776654478888876554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.17  E-value=1e-10  Score=117.06  Aligned_cols=132  Identities=12%  Similarity=0.012  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhc
Q 011275           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (489)
Q Consensus        88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  167 (489)
                      .+.|++.+...++..++.++.|+++||+|||+.+..+.++.+++..+.+++++.+.+.+.+++.|++.+...+....++.
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888888888999999999999999999999999999998888889999999999999999988877777778899


Q ss_pred             ccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011275          168 EVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       168 e~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      |.+|++.|+...+. ++....+|..+++.+++.+.+..| ||..|...++..++
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i  394 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLL  394 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHH
Confidence            99999999877655 567778888888888888777667 69888875444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.16  E-value=4.6e-12  Score=128.57  Aligned_cols=143  Identities=20%  Similarity=0.240  Sum_probs=3.0

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH
Q 011275           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      .+++..+......+.++..++++.++|+++.+  +.|++.+.+-++..+..++..++.+|..|-+.+-.+.+++++|+++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~--~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSS--QSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            34444455556667788889999999998755  5689999999999999999999999988888888899999999887


Q ss_pred             HHhc----c----------------------------------------------hHHHHHHHHHHHhhhcccccccccc
Q 011275          135 SATT----R----------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus       135 ~~~~----~----------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      .++-    .                                              -+..++++.++.|+|....++++.+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            6530    0                                              0234678999999999999999999


Q ss_pred             hhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011275          165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       165 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  199 (489)
                      |+=|..+++.-+.+.+++.....+|+.+|.++|..
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~  199 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF  199 (539)
T ss_dssp             -----------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence            99999999999999999999999999988888753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.16  E-value=1e-07  Score=90.90  Aligned_cols=327  Identities=17%  Similarity=0.122  Sum_probs=177.3

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hhHHHHH-hHHHHHHHHHHHHh-----cc-------
Q 011275           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQL-CALPMIIGASISAT-----TR-------  139 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~-~~~~~~i~~~l~~~-----~~-------  139 (489)
                      ..|+++.  ....+...++..+- ....+.+|+.+|+.+     ||..+++ +.+++..+..+..+     +.       
T Consensus         7 IvEL~vp--A~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    7 IVELGVP--AWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHHhccH--HHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            4466654  22334444544333 356889999999999     7766654 45555554444432     22       


Q ss_pred             hH--H--HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011275          140 NL--I--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       140 ~~--~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~  215 (489)
                      +.  +  .....-.+.|+|.+...+...++++|..|+++|+++.++......+|.+++.+..+.+.+..+--|..-.+..
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            12  2  2234667888888888888889999999999999999999999999988877765544333332344433332


Q ss_pred             HH--HHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011275          216 VP--AAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       216 ~~--~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ..  .+++.++..+-.|.+.       .+..                    ...++++..-...+.++..+++.++.+..
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~-------~~~~--------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~f  216 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRR-------SRRA--------------------AAAERPRPPFREAWRQVWASPQARRFFVF  216 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCC-------cccc--------------------cCCCCCCccHHHHHHHHHhCCChhHHHHH
Confidence            22  2222222333334311       0000                    00011111112335555556665555433


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHh-hcCCchhHHHhhHHHHHHHHHHH
Q 011275          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      .++.....+ ....  ...|+-=+..+++.+   ..+...+.+.++|..+.+++.. |.++++...++.....++..++.
T Consensus       217 l~l~t~a~~-~QD~--iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii  293 (403)
T PF03209_consen  217 LFLGTLAFF-MQDV--ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII  293 (403)
T ss_pred             HHHHHHHHH-hhHH--HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            222211100 0000  111111123445444   3455667888888888888766 67777777777777777666555


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc-ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV-PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (489)
                      ......  + .  +..-..+..+++  +.|...+ .-..+-++.+++..|+.+|.=...+.+...++.+..+...|
T Consensus       294 ~a~~~~--~-~--~~~~~~~~l~G~--g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  294 LAGPLG--S-P--WLFRPGVFLLGL--GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHhcc--c-c--hHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443221  1 1  111122222222  2222111 11245577778889999988777777766666665555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10054 putative transporter; Provisional

Probab=99.14  E-value=1.5e-09  Score=107.51  Aligned_cols=148  Identities=14%  Similarity=0.074  Sum_probs=97.6

Q ss_pred             HhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011275          317 KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       317 ~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      +..|.+.   ++......++..++.+..|+++||+|||+++..+.....++........+      .  +..+.......
T Consensus        36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~g  107 (395)
T PRK10054         36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN------V--TLVVLFFALIN  107 (395)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH------H--HHHHHHHHHHH
Confidence            4455543   45555666788888999999999999999887776666555444332211      1  11111111111


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      .... ...|....+.+|.+|++.|+++.++.....+++..++|.+...+. ..++...|.+.++++++..+.....+||+
T Consensus       108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        108 CAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-MQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1111 224555667899999999999999999999999999988877655 46788888877777666655554445554


Q ss_pred             C
Q 011275          474 K  474 (489)
Q Consensus       474 ~  474 (489)
                      +
T Consensus       186 ~  186 (395)
T PRK10054        186 E  186 (395)
T ss_pred             c
Confidence            3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.13  E-value=3.3e-10  Score=112.83  Aligned_cols=134  Identities=15%  Similarity=0.168  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhccc
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .+.+.+...++..++.+..|+++||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+....++.|.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            35556666778888999999999999999999998888888777777778888888999999999999888888888899


Q ss_pred             CCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       170 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      .|+++||+..+++.....+|..+|+.+++.+.+..+ |++.|++..+..++..+.
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776666 689998765555554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.11  E-value=1e-08  Score=102.22  Aligned_cols=153  Identities=19%  Similarity=0.196  Sum_probs=102.9

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhhHHHHHhHHHHHHHHHHHHhc----chHHHH
Q 011275           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNLIGM  144 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l  144 (489)
                      .+.+.+++|.++++.+  ...+...+.. ..-++.|.++|-+     -||+-++++.++..++....+..    .+....
T Consensus        13 ~~~l~~~l~ls~~~~~--~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQ--RLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHcCCCHHHHH--HHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            4567778898866543  3444444443 3468899999975     36666666776665555544442    346666


Q ss_pred             HHHHHHHhhhcccccccccchhcccCC--cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p--~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~  222 (489)
                      .+.=++..+|....-.++-+.+.|...  ++.||...++......+|.+++..+++++.+..+ .|+.|.+..+...+..
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHH
Confidence            666788888888888888899999884  3447888888888888998888888877766555 5777776544444433


Q ss_pred             -HHhhcccC
Q 011275          223 -LAMVFCAE  230 (489)
Q Consensus       223 -~~~~~~pE  230 (489)
                       ...+..+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence             33344444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00898 2A0119 cation transport protein

Probab=99.10  E-value=4.1e-10  Score=115.53  Aligned_cols=133  Identities=14%  Similarity=0.016  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchH--HHHHHHHHHHhhhcccccccccchhcccCCcc
Q 011275           96 MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (489)
Q Consensus        96 ~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~  173 (489)
                      ...+...++.++.+++.||+|||+.+..+.++.+++.++..+.++.  ....+.-++.+++.+...+....+..|.+|++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            3445667888999999999999999999998888888777766544  44555566777777777778888999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 011275          174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       174 ~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~pEs  231 (489)
                      .|+...++.+....+|.+++|.+.. +.+ .+ +...+++.+...++..+..+++||+
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            9999999999999999888888766 322 22 4556665555555555566778987

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.10  E-value=2.9e-10  Score=112.34  Aligned_cols=143  Identities=20%  Similarity=0.179  Sum_probs=105.7

Q ss_pred             eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH--HHHHh--cchHHHH
Q 011275           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SISAT--TRNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~--~l~~~--~~~~~~l  144 (489)
                      .....|.+. ++++.+.+  +.+.......++..++.++.|+++||+|||+.+.....+..+..  .+...  .++.+.+
T Consensus       238 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       238 ITTYLPTYLTQTLGLSAN--SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            344556665 55666543  45677778888899999999999999999998876555444333  22222  2466667


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~  214 (489)
                      ....++.|++.+...+....++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+..+.|++.++..
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            7788999999888888889999999999999999887 456677788788888877776666467766554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.08  E-value=1e-09  Score=107.92  Aligned_cols=147  Identities=18%  Similarity=0.284  Sum_probs=111.7

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhccc
Q 011275           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~  157 (489)
                      .+++|.+.+  +.++..+.......++.++.|++.||+|||+++..+.++..++..+....++.+.+.+.+++.|++.|.
T Consensus       227 ~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       227 IHELGLPDK--LAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456676543  456666666566677889999999999999999887776666655556667888888899999999888


Q ss_pred             ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 011275          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      ..+....++.|..|+ +|++..++++....+|..+++.+++.+.+..+ |+..|++..+..++..+...++
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence            888788888999876 56799999998888998888888777666656 6888887666555555544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.08  E-value=8.4e-09  Score=102.17  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=107.1

Q ss_pred             HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+.   +.......++..++.++.|++.||+|||+++..+.+..+++..+.....     + ... +. ..
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~~-l~-~~  114 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----S-FSL-LL-IG  114 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----h-HHH-HH-HH
Confidence            344555566554   3444566778888999999999999999998888777766555433221     1 111 11 11


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      -.+.+...+. ..|....+++|.+|++.|+++.++......++..++|.+.+.+.+..+|.+.|.+.++++++..++...
T Consensus       115 r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~  193 (394)
T PRK10213        115 RACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK  193 (394)
T ss_pred             HHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222211 234556678999999999999999999999999999988888888889988888888777766666656


Q ss_pred             hcccCCC
Q 011275          469 NVVETKG  475 (489)
Q Consensus       469 ~~pet~~  475 (489)
                      .+||+++
T Consensus       194 ~~p~~~~  200 (394)
T PRK10213        194 SLPSLPG  200 (394)
T ss_pred             HCCCCCc
Confidence            6788654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.06  E-value=1.5e-09  Score=107.24  Aligned_cols=152  Identities=18%  Similarity=0.164  Sum_probs=100.9

Q ss_pred             ceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhH--HHH------HhHHHHHHHHHHHHh
Q 011275           67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQ------LCALPMIIGASISAT  137 (489)
Q Consensus        67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~--~~~------~~~~~~~i~~~l~~~  137 (489)
                      ....+...|.+.+ +++.+  +.+.++..+...++..++.++.|+++||+|||+  ...      .+.++..+.......
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLS--ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY  308 (399)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            3334445565544 45554  345577888888888999999999999999996  111      111111111111222


Q ss_pred             cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011275          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       138 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~  217 (489)
                      .++.......-++.+.+.+ ..+....++.|.+|+++||+..++.+....+|..+++.+.+.+.+..+.|+..|++..+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~  387 (399)
T TIGR00893       309 VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAAL  387 (399)
T ss_pred             chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHH
Confidence            2344444444445555444 677888899999999999999999999999999999988887777666357777765444


Q ss_pred             HHHH
Q 011275          218 AAIL  221 (489)
Q Consensus       218 ~~~~  221 (489)
                      .++.
T Consensus       388 ~~~~  391 (399)
T TIGR00893       388 ALIG  391 (399)
T ss_pred             HHHH
Confidence            4433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.06  E-value=1.4e-09  Score=110.33  Aligned_cols=148  Identities=18%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH--HHhcchHHHHHH
Q 011275           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI--SATTRNLIGMLL  146 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l--~~~~~~~~~l~~  146 (489)
                      ....+|.+. +++|++..  +.++..+.+.++..+|.++.|+++||+|||+.+.....+..++..+  .....+...+.+
T Consensus       277 ~~~~~p~yl~~~~g~s~~--~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        277 IDNWSPVYAFQELGFSKE--DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344566554 56777644  4567888888899999999999999999998876654444433222  223456666778


Q ss_pred             HHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHH-HHHHHHHhhccccc------------CCchhHHHHHH
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------------IAGWWRICFWV  213 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~~~~~------------~~~~wr~~f~~  213 (489)
                      .+++.|+...+..........|.+|+++||.+.++.+....+ |..+++.+.+.+.+            ..+ |+..|++
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~  433 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAA  433 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHH
Confidence            888888654333333335677999999999999999877775 65555555555444            334 7888876


Q ss_pred             HHHHHHH
Q 011275          214 SIVPAAI  220 (489)
Q Consensus       214 ~~~~~~~  220 (489)
                      ..+..++
T Consensus       434 ~~~~~~~  440 (467)
T PRK09556        434 LDIAAIG  440 (467)
T ss_pred             HHHHHHH
Confidence            5444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.05  E-value=1.7e-08  Score=101.44  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=106.0

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      .+.+.+.++.+.+.   +.......++..++.++.|++.||+|||+.+.++.+..+++..+.....+        .+...
T Consensus        44 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~  115 (434)
T PRK11663         44 AAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--------LWAFA  115 (434)
T ss_pred             HhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH--------HHHHH
Confidence            44566666666653   45556677888899999999999999999988877776666554433211        11111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+..+..+.+ .+....+..|.+|++.|++++++.+....++..+++.+...+.+..++.+.|.+.++++++..+..
T Consensus       116 ~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~  194 (434)
T PRK11663        116 LLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFL  194 (434)
T ss_pred             HHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            1111222222222 344556789999999999999999999999999999888888788898888888777665554444


Q ss_pred             HhhcccC
Q 011275          467 KRNVVET  473 (489)
Q Consensus       467 ~~~~pet  473 (489)
                      ...+||+
T Consensus       195 ~~~~~~~  201 (434)
T PRK11663        195 CWRLRDK  201 (434)
T ss_pred             HHHcCCC
Confidence            4445554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.05  E-value=1.1e-09  Score=112.07  Aligned_cols=140  Identities=16%  Similarity=0.061  Sum_probs=104.3

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc--chHHHHHHH
Q 011275           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG  147 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~  147 (489)
                      ...+|.+. +++|.+.  .+.++..+.+.++..+|.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+.
T Consensus       295 ~~~lp~~l~~~~g~~~--~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKTDLGYDP--HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34566666 4777654  356788899999999999999999999999999988877666655444332  334444455


Q ss_pred             HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      .++.+....+..+..+.++.|.+|+++||+.++++.....+|..+++++++.+.+..+ |+..+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~  437 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALAS  437 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHH
Confidence            5555544444455667789999999999999999998889999899998888877766 5666544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.05  E-value=1.4e-09  Score=110.88  Aligned_cols=284  Identities=18%  Similarity=0.262  Sum_probs=185.6

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ++.+++..+..+...+.++..+.++.+.++++.++  .|++.+.+=+|..+...+..+..-|.-|-+.+-++.+++++++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~--sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ--SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc--ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            44556666777777788889999999999997664  6899999999999999999999999999999999999999999


Q ss_pred             HHHHhc--------------------c------------------------------h-HH-HHHHHHHHHhhhcccccc
Q 011275          133 SISATT--------------------R------------------------------N-LI-GMLLGRFVVGTGMGLGPT  160 (489)
Q Consensus       133 ~l~~~~--------------------~------------------------------~-~~-~l~~~R~l~G~g~g~~~~  160 (489)
                      +++++-                    +                              + ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            998651                    0                              0 12 456799999999999999


Q ss_pred             cccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc----cC-----------Cch---hHHHHHHHHHHHHHHH
Q 011275          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----EI-----------AGW---WRICFWVSIVPAAILC  222 (489)
Q Consensus       161 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~----~~-----------~~~---wr~~f~~~~~~~~~~~  222 (489)
                      .+..|+=|...+++-..+.+++.....+|+++|.++|....    +.           ..|   |+.-|++.....++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988875421    11           123   6666777666666666


Q ss_pred             HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCc-hhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHh
Q 011275          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH-VKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (489)
Q Consensus       223 ~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
                      +.++++|.+..   ...+..+++ +.+....++. .++..    ...+.-..-+...+++++++.+....++..+..   
T Consensus       337 ~p~f~fPk~lp---~~~~~~~~~-~~~~~k~~~~~~~~~~----~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~---  405 (735)
T KOG3626|consen  337 VPLFFFPKELP---KSQKRKRAR-DLHVLKTESGGAKSDK----TFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES---  405 (735)
T ss_pred             HHHHhCcccCc---cccccchhh-hhcccccccccccCCc----chhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH---
Confidence            66777776532   111111110 0000000000 00000    000000001223455666655544443333322   


Q ss_pred             hhhHHHHHHhHHHHH-HhcCCCcchHHHHHHH----HHHHHHHHHHHHHhhcCC
Q 011275          302 LSGINAIFYFSSSVF-KSAGLSSGLANVFVGI----ANLLGSVVAMVLMDKLGR  350 (489)
Q Consensus       302 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i----~~~~g~~~~g~l~dr~gr  350 (489)
                       ..+.....|.|.++ ++.+.+++.++...+.    +..+|.+++|++..|+.-
T Consensus       406 -~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  406 -LAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             -HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence             22333334455444 4577777766655543    344677889999998754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=7.4e-09  Score=102.19  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=107.2

Q ss_pred             HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .|.+.++.+.+.   ++......++..++.++.|++.||+|||+.+..+.....++........     + .  +.....
T Consensus        28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----~-~--~~~~~~   99 (385)
T TIGR00710        28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----N-I--ETLLVL   99 (385)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----c-H--HHHHHH
Confidence            345555556543   4566667788899999999999999999998887766666555443321     1 1  111111


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .++.+.+.+ ...+....+..|.+|++.|++..++......++..+++.+.+.+.+..++...+.+.++++++..+....
T Consensus       100 ~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       100 RFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111 1124455678999999999999999999999999989888877777788888888877777776666666


Q ss_pred             hcccCCCC
Q 011275          469 NVVETKGK  476 (489)
Q Consensus       469 ~~pet~~~  476 (489)
                      ..||++.+
T Consensus       179 ~~~~~~~~  186 (385)
T TIGR00710       179 ILPETLPY  186 (385)
T ss_pred             hCCCCCCC
Confidence            67877554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.05  E-value=1.5e-08  Score=100.99  Aligned_cols=156  Identities=19%  Similarity=0.146  Sum_probs=105.6

Q ss_pred             hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011275          311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.++.+.+.   ++......++..++.+..|++.||+|||+++..+.+...++..+.....+     .. . +.+ 
T Consensus        30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-----~~-~-l~~-  101 (412)
T TIGR02332        30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG-----PE-S-LYL-  101 (412)
T ss_pred             HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-----HH-H-HHH-
Confidence            3444445555543   45566677888899999999999999999988777766666555443211     11 1 111 


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhHHHHHHHHHH
Q 011275          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLM  461 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~  461 (489)
                      .-++.+++.+ +..|....+..|.+|++.|++..++.+....++..+++.+...+.+      ..||++.|.+.++..++
T Consensus       102 ~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~  180 (412)
T TIGR02332       102 LRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI  180 (412)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence            1112222222 1235555678999999999999999999888888888877666553      35888899888887776


Q ss_pred             HHHHHHhhcccCCC
Q 011275          462 AVAFVKRNVVETKG  475 (489)
Q Consensus       462 ~~~~~~~~~pet~~  475 (489)
                      ..+..+..+||++.
T Consensus       181 ~~~~~~~~~~~~p~  194 (412)
T TIGR02332       181 LGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHhhccCCCcc
Confidence            66666667888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.04  E-value=3.6e-09  Score=107.48  Aligned_cols=161  Identities=15%  Similarity=0.016  Sum_probs=112.3

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh-----cc---
Q 011275           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TR---  139 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~---  139 (489)
                      .......|.+.+++|.+.+  +.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++     ..   
T Consensus       301 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (481)
T TIGR00879       301 NAIMYYSPTIFENAGVSTD--HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS  378 (481)
T ss_pred             eehHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            3344556777788887753  3467777788888899999999999999999999888877777666652     11   


Q ss_pred             ---hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          140 ---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       140 ---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                         +...+....++.+.......+....++.|.+|+++|++..++......+|..+++.+...+.+..+ |++.|++.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~  457 (481)
T TIGR00879       379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGG  457 (481)
T ss_pred             cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHH
Confidence               233333333333333333445666778999999999999999999999998888877666655555 6877776554


Q ss_pred             HHHHHHHH-hhcccCC
Q 011275          217 PAAILCLA-MVFCAES  231 (489)
Q Consensus       217 ~~~~~~~~-~~~~pEs  231 (489)
                      ..++..+. .++.||+
T Consensus       458 ~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       458 LNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHHHHHHHHheecccC
Confidence            44444333 3456665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.04  E-value=2e-08  Score=101.94  Aligned_cols=151  Identities=10%  Similarity=0.052  Sum_probs=94.3

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      .+.+.+.++.+.+.   +.......++..++.++.|+++||+|||+++..+.+..+++.++.....     + .....  
T Consensus        57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----s-~~~l~--  128 (476)
T PLN00028         57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----S-ATGFI--  128 (476)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----C-HHHHH--
Confidence            34455666666653   3445556678889999999999999999988776665555544333221     1 11111  


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCchhHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---------QLGPQLLYSIFGT  457 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~  457 (489)
                      ...++.+++.  +..+....+++|.+|++.|+++.|+.+...++++.+++.+.+.+..         ..||++.|.+.++
T Consensus       129 ~~r~l~G~~~--~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~  206 (476)
T PLN00028        129 AVRFFIGFSL--ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGL  206 (476)
T ss_pred             HHHHHHHHHH--HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence            1111122221  1112223467899999999999999988888887777665543322         1368888888888


Q ss_pred             HHHHHHHHHHhhc
Q 011275          458 FCLMAVAFVKRNV  470 (489)
Q Consensus       458 ~~~~~~~~~~~~~  470 (489)
                      ++++..+...+..
T Consensus       207 l~l~~~l~~~~~~  219 (476)
T PLN00028        207 LHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHc
Confidence            7776655544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.04  E-value=2.9e-09  Score=105.09  Aligned_cols=133  Identities=12%  Similarity=0.019  Sum_probs=115.5

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      +....|.+.+|.|.+.+  +.|...+...++..++.++.+++.||+|+|+.+.++.++..+...+.+++++.+.+++.++
T Consensus       224 ~~~~~~~~l~~~g~s~~--~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~  301 (382)
T TIGR00902       224 YYGFSAIYWQAAGISAS--ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHh--HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence            34455666677777644  4577777888888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~  205 (489)
                      ++|+..|...+....++.+. |+++|++..++++ ....+|..+++++++.+.+..+
T Consensus       302 l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       302 LHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998 9999999999986 5778899999999998887766

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.04  E-value=1.7e-09  Score=106.81  Aligned_cols=143  Identities=13%  Similarity=0.106  Sum_probs=110.5

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHh
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      .+|.+.++.|.+.+  +.++..+...++..+++++.|+++||+|||+++..+..+..++.....  . ........++.|
T Consensus       222 ~lp~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        222 LMPLYLNHQGMSDA--SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            46777777676543  457778888889999999999999999999999888777777655443  2 233455778888


Q ss_pred             hhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011275          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~  221 (489)
                      ++.+...+....++.|..|+++++...+.+.....+|..++|.+++.+.++.+ |++.|.+.+...++.
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~  364 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence            88777788888888999999888888888888899999999998888777666 578887654444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.03  E-value=1.1e-08  Score=102.10  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=103.1

Q ss_pred             HHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          314 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+-++.+.+..   .......++..++.++.|+++||+|||+++..+.....++.......      +.... +. ..-+
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~-l~-~~r~  112 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------TSMTQ-FL-IARF  112 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------CCHHH-HH-HHHH
Confidence            34445555433   34455668888899999999999999999888766665555443321      11111 11 1112


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Q 011275          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+++.+ ...+....+..|.+|++.|++.+++......++..+++.+...+.+..+|.+.|.+.+++.++..++....+
T Consensus       113 l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        113 IQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2222211 112344567889999999999999999999999888887776676777888899888887777766656678


Q ss_pred             ccCCC
Q 011275          471 VETKG  475 (489)
Q Consensus       471 pet~~  475 (489)
                      ||++.
T Consensus       192 p~~~~  196 (413)
T PRK15403        192 PETVK  196 (413)
T ss_pred             CCCcc
Confidence            88764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.03  E-value=3.2e-09  Score=105.17  Aligned_cols=159  Identities=17%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc-hHHHHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~~R  148 (489)
                      ....+|.+.++.|.+.+  +.+...+.+.++..+|.++.|++.||+|||+.+..+..+..++..+....+ +...+.  -
T Consensus       224 ~~~~lp~~l~~~g~s~~--~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~  299 (393)
T PRK09705        224 LIAWLPAFYIEIGASAQ--YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--A  299 (393)
T ss_pred             HHHHHHHHHHHcCCChh--hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--H
Confidence            34456667777776644  457888899999999999999999999999999888777777665544333 322222  2


Q ss_pred             HHHhhhcccccccccchhcccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhh
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMV  226 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~  226 (489)
                      ++.|++.+...+.......|..+ +++||+..++.+....++..++|.+.+.+.+..+.|+..|++..+..++. .....
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            46788888777776666667774 67899999999888888888888888877776665788777654443333 33345


Q ss_pred             cccCCh
Q 011275          227 FCAESP  232 (489)
Q Consensus       227 ~~pEsp  232 (489)
                      +.||++
T Consensus       380 ~~~~~~  385 (393)
T PRK09705        380 FAPARF  385 (393)
T ss_pred             hccccc
Confidence            667763

>TIGR00895 2A0115 benzoate transport

Probab=99.03  E-value=8e-09  Score=102.29  Aligned_cols=158  Identities=21%  Similarity=0.222  Sum_probs=107.4

Q ss_pred             HHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHH
Q 011275          308 IFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  384 (489)
Q Consensus       308 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (489)
                      ..++.+.+.+..+.+.   ++......++..++.++.|+++||+|||+.+..+.....++..+.....      ..  ..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~--~~  107 (398)
T TIGR00895        36 MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT------NV--TQ  107 (398)
T ss_pred             HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc------ch--HH
Confidence            3345555556666553   3455666788889999999999999999998887766665554433211      11  11


Q ss_pred             HHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 011275          385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      .....++.+++.+ ...+....+..|.+|++.|+++.++......++..+++.+.+.+.+..++...+.+.++++++..+
T Consensus       108 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       108 LLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             HHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence            1111222222111 223556678899999999999999999999999999998887877778888888777666666655


Q ss_pred             HHHhhcccCC
Q 011275          465 FVKRNVVETK  474 (489)
Q Consensus       465 ~~~~~~pet~  474 (489)
                      .....+||+.
T Consensus       187 ~~~~~~~~~~  196 (398)
T TIGR00895       187 LLMRFLPESI  196 (398)
T ss_pred             HHHHhCCCCC
Confidence            5556677764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.02  E-value=1.2e-08  Score=101.09  Aligned_cols=158  Identities=15%  Similarity=0.099  Sum_probs=105.3

Q ss_pred             HhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ...+.+.++.+.+..   +......++..++.++.|+++||+|||+.+..+.....++..+.....      .... +. 
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~------~~~~-~~-   95 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE------TSSL-FL-   95 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC------cHHH-HH-
Confidence            445566666665543   445566678888999999999999999998887766666555443221      1111 11 


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+...+ ...+....+..|.+|++.|++..++.+....++..++|.+...+.+..++...+.+.+.++++..++.
T Consensus        96 ~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473         96 AGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            11111111111 11234556789999999999999999999888888888776666667788888888887777766666


Q ss_pred             HhhcccCCCC
Q 011275          467 KRNVVETKGK  476 (489)
Q Consensus       467 ~~~~pet~~~  476 (489)
                      ...+||++.+
T Consensus       175 ~~~~~~~~~~  184 (392)
T PRK10473        175 LFILKETRPA  184 (392)
T ss_pred             HHHcCCCCCc
Confidence            5667776543

>PRK03699 putative transporter; Provisional

Probab=99.01  E-value=2.2e-09  Score=106.49  Aligned_cols=154  Identities=12%  Similarity=0.071  Sum_probs=115.3

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      ....|.+. +++|++.+  +.++..+.+.++..+|.++.|+++||+|||+.+.....+..+...+....++...+.+.-+
T Consensus       225 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (394)
T PRK03699        225 ISWVPEYAQKKFGMSLE--DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL  302 (394)
T ss_pred             HHHHHHHHHHHcCCChH--HhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            44566666 45677644  4578888888999999999999999999999998877777776666667778777777888


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      +.|++.+..++....+..|..|. ++++..+.......+|..++|.+.+.+.+..+ |+..++...+..++.......+
T Consensus       303 ~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        303 GLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence            99998887777777777887764 46777788888888898888888877776666 5777776544444443333333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.01  E-value=2.4e-09  Score=106.99  Aligned_cols=158  Identities=13%  Similarity=0.068  Sum_probs=122.8

Q ss_pred             ccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      +...|.+.++ +|.+..  ..+++.+.+.++..++.++.+++.||.++|+.+..+.++..++.++.+..++...+.++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~--~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAA--QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChh--HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3345666666 676543  4678888889999999999999999988888888888888888888888888888888899


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH-HHHHHHHhhcc
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP-AAILCLAMVFC  228 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~-~~~~~~~~~~~  228 (489)
                      +.|++.+...+....++.|..|++.||+..+++.....+|..+|+.+.+.+.+..+ .+..++..+.. .++..+....+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99998887777777889999999999999999999999999888888887776655 35555544333 33333444455


Q ss_pred             cCC
Q 011275          229 AES  231 (489)
Q Consensus       229 pEs  231 (489)
                      +|.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            655

>PRK03545 putative arabinose transporter; Provisional

Probab=99.00  E-value=2.7e-08  Score=98.53  Aligned_cols=154  Identities=16%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             HHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+..   +......++..++.+..|.+.||+|||+++..+.....++........+      ... +.+ .
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~-l~~-~  103 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN------FTV-LLI-S  103 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc------HHH-HHH-H
Confidence            4555566666543   4444566677788888999999999999988887766666554433211      111 111 1


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .++.+...+ ...|....+..|.+|++.|++++|+......++..+++.+...+.+..+|.+.|.+.++++++..+....
T Consensus       104 r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        104 RIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111 1224445678899999999999999999999999888888777777789999998888887777666555


Q ss_pred             hcccCC
Q 011275          469 NVVETK  474 (489)
Q Consensus       469 ~~pet~  474 (489)
                      .+||.+
T Consensus       183 ~~~~~~  188 (390)
T PRK03545        183 LLPLLP  188 (390)
T ss_pred             hCCCCC
Confidence            666643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.99  E-value=6.2e-09  Score=106.24  Aligned_cols=158  Identities=16%  Similarity=0.057  Sum_probs=109.5

Q ss_pred             HhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ...+.+.++.+.+   .++......++..++.++.|+++||+|||+.+..+.....++.......      +...  ..+
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~--~l~   94 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA------PNLE--LMI   94 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc------CCHH--HHH
Confidence            3445555555554   4567777889999999999999999999999888777666655443221      1111  111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+.+. ....|....+..|.+|++.|+++.++......++..+++.+.+.+.+..+|.+.|.+.+.++++..+..
T Consensus        95 ~~~~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711        95 IFRVIQGFGG-GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA  173 (485)
T ss_pred             HHHHHHHhhh-hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence            1112222211 123355667889999999999999999999999998888887777777888888888777776666656


Q ss_pred             HhhcccCCCC
Q 011275          467 KRNVVETKGK  476 (489)
Q Consensus       467 ~~~~pet~~~  476 (489)
                      ....||++.+
T Consensus       174 ~~~~~~~~~~  183 (485)
T TIGR00711       174 FFILPRDKPA  183 (485)
T ss_pred             HHHcCCcccc
Confidence            5667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=1.7e-08  Score=98.81  Aligned_cols=153  Identities=15%  Similarity=0.037  Sum_probs=99.6

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+   .++......++..++.+..|+++||+|||+++.........+. ......     ... ..+. ..
T Consensus        14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~-----~~~-~~l~-~~   85 (368)
T TIGR00903        14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP-----FNY-EWLL-AC   85 (368)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh-----ccH-HHHH-HH
Confidence            34444555544   3455566678888999999999999999987644332222221 111110     111 1111 11


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      -++.+.  +.+..+......+|.+|++.|++++++......++..+++.+...+.+..||+..|.+.+++.++..++.+.
T Consensus        86 R~l~G~--g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903        86 QLLAAL--GQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHh--HhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            111122  222222333456899999999999999999999999999888788878889999998888888777777777


Q ss_pred             hcccCC
Q 011275          469 NVVETK  474 (489)
Q Consensus       469 ~~pet~  474 (489)
                      .+||.+
T Consensus       164 ~lp~~p  169 (368)
T TIGR00903       164 ALPALP  169 (368)
T ss_pred             HcCCCC
Confidence            888864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.97  E-value=2.6e-08  Score=97.33  Aligned_cols=140  Identities=14%  Similarity=0.065  Sum_probs=94.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++......++..++.++.|+++||+|||+++..+.....++..+........ ...  .+.......+...+.+. ..|
T Consensus        36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~g~~~~~-~~~  111 (365)
T TIGR00900        36 LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-GLN--IWQVYVLAGILAIAQAF-FTP  111 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-CCc--HHHHHHHHHHHHHHHHH-HHH
Confidence            35566677788889999999999999999998877666555554443332111 001  11111112222222221 234


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+|.+|++.|++..++......++..+++.+...+.+..++...|.+.++..++..++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            5566889999999999999999999999999999888877788888888777666555554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.96  E-value=4.4e-09  Score=104.47  Aligned_cols=139  Identities=20%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             chhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 011275           73 PLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFV  150 (489)
Q Consensus        73 ~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~-l~~~~~~~~~l~~~R~l  150 (489)
                      ..|.+. +++|++.  .+.+++.+...++..++.++.|+++||+|||+.+..+.++..+... +.....+.+.+.+..++
T Consensus       260 ~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       260 LLPTYLKADLGLSP--HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            344443 4566654  3557888888999999999999999999999999887766533322 33345666667777788


Q ss_pred             HhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      .|+..++..+....++.|.+|+++||++.++.+....+|..+++++++.+.+..+.|+..+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            888777777778889999999999999999999989999888998888877766645665543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.95  E-value=2.7e-08  Score=101.64  Aligned_cols=157  Identities=17%  Similarity=0.066  Sum_probs=105.8

Q ss_pred             hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011275          311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      -.|.+.++.+.+   .++......++...+.+..|+++||+|||+.+..+.....++........     + .  +..+.
T Consensus        28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-----~-~--~~li~   99 (495)
T PRK14995         28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-----T-A--SWLIA   99 (495)
T ss_pred             HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-----C-H--HHHHH
Confidence            345555555543   34566667778888889999999999999999888777776665543321     1 1  11111


Q ss_pred             HHHHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          388 GMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .-.+.+++.+. ..|.......+.+ |++.|+++.|+......++..++|.+.+.+.+..+|++.|.+...++++..++.
T Consensus       100 ~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995        100 TRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence            12222222221 2233333344544 789999999999999999999999988888888899999888877777776666


Q ss_pred             HhhcccCCCC
Q 011275          467 KRNVVETKGK  476 (489)
Q Consensus       467 ~~~~pet~~~  476 (489)
                      .+.+||.+++
T Consensus       179 ~~~l~~~~~~  188 (495)
T PRK14995        179 ARYVPRQAGR  188 (495)
T ss_pred             HHhCCCCCCC
Confidence            6677776443

>PRK09952 shikimate transporter; Provisional

Probab=98.95  E-value=9.3e-09  Score=103.39  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=99.5

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh---c-chHHHHHHHHHHHhh
Q 011275           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLLGRFVVGT  153 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---~-~~~~~l~~~R~l~G~  153 (489)
                      .+++|.+.+.  .............++.++.|+++||+|||+++..+.++..++......   . ++...+++.-++.|+
T Consensus       278 ~~~~g~s~~~--~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        278 TQNLGLPREL--FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHhcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4566665432  223333444555678889999999999999998876665554433222   2 234444456677788


Q ss_pred             hcccccccccchhcccCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCC-chhHHHHHHHHHHHHHHHHHhhcccCC
Q 011275          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~pEs  231 (489)
                      +.+...+....++.|.+|++.|+...++. ..+..+|..++|.+...+.+.. +.|+..+....+..++..+..+..+|+
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            87777777888999999999998888874 4555577777777766654432 336877776555555555554555554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.95  E-value=3.7e-08  Score=98.09  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=102.6

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   +.......++..++.++.|.++||+|||+.+..+.....++........     + ... + +...
T Consensus        37 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~-~~~-l-~~~~  108 (406)
T PRK15402         37 LAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----S-IEQ-F-TLLR  108 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----c-HHH-H-HHHH
Confidence            34445555543   3445566788889999999999999999998877666665554433221     1 111 1 1111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+...+ ...+....+..|.+|++.|.+..++......++..++|.+...+.+..++.+.+.+.++++++..+.....
T Consensus       109 ~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        109 FLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             HHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHh
Confidence            11111111 11244556778999999999999998888777888888777777777788888888888777776666666


Q ss_pred             cccCCC
Q 011275          470 VVETKG  475 (489)
Q Consensus       470 ~pet~~  475 (489)
                      .||+++
T Consensus       188 ~~~~~~  193 (406)
T PRK15402        188 MPETAG  193 (406)
T ss_pred             CCCCCc
Confidence            788764

>TIGR00897 2A0118 polyol permease family

Probab=98.94  E-value=1.1e-08  Score=101.70  Aligned_cols=149  Identities=11%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHH-HhHHHHHHHHHHHHh-----cchHHHH
Q 011275           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-----TRNLIGM  144 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~-~~~~~~~i~~~l~~~-----~~~~~~l  144 (489)
                      ....|.+.+++|.+.+  +.++..+...++..++.++.|+++||+|||+.+. .+.+...++......     .++.+.+
T Consensus       242 ~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       242 AVFLPMFVAELGFSTS--EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHHHHcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            3456777788887654  3467777788899999999999999999988764 333333333333221     3456667


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      .+..++.|++.+...+. ...+.|..| ++||+..++++....+|..++|.+++.+.+..+ |+..|++.++..++..+.
T Consensus       320 ~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       320 LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH
Confidence            77888899887766543 345677655 589999999999999999889988877777767 577777655544444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.93  E-value=4.2e-08  Score=98.39  Aligned_cols=155  Identities=21%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      +..+.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+....+++..+......      .  +...
T Consensus        39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~--~~l~  110 (426)
T PRK12307         39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG------V--IMLT  110 (426)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH------H--HHHH
Confidence            33444445555543   45566677888999999999999999999998887777776655443321      1  1111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ..-.+.+.+.+ +..+....+..|.+|++.|+++.++......++..+++.+.+.+.+..+|.+.|.+... .++...+.
T Consensus       111 ~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~  188 (426)
T PRK12307        111 LSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYI  188 (426)
T ss_pred             HHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHH
Confidence            11111111111 12345556789999999999999999888888888888777666666788777765433 33333333


Q ss_pred             HhhcccCC
Q 011275          467 KRNVVETK  474 (489)
Q Consensus       467 ~~~~pet~  474 (489)
                      ....||++
T Consensus       189 ~~~~p~~~  196 (426)
T PRK12307        189 RARAPESK  196 (426)
T ss_pred             HHHCCCCh
Confidence            44466654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.93  E-value=7.2e-09  Score=86.01  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011275          329 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  408 (489)
Q Consensus       329 ~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (489)
                      ...++..++.++.+++.||+|||+.+..+.....++........     + .  +.............. ...+....+.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~-~--~~~~~~~~~~g~~~~-~~~~~~~~~~   76 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----N-I--TVLIIARFLQGFGAA-FALVAGAALI   76 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----c-H--HHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence            34577888999999999999999988776665555544332211     1 1  111111122222221 1234556678


Q ss_pred             cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      .|.+|++.|++..++.+...+++..+++.+.+.+.+..++...+.+.+.+.++..+......|||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999998888777777777788887777777776666667764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.93  E-value=9.2e-08  Score=96.65  Aligned_cols=158  Identities=15%  Similarity=0.072  Sum_probs=95.7

Q ss_pred             hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011275          311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.+. +.+   .++......++..++.++.|+++||+|||+++..+.++.+++..........  ...  ......
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~  125 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSS--IAVMFV  125 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--ccc--HHHHHH
Confidence            34444444 554   3455666778889999999999999999999888877666665544332110  011  111111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF-LRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...+.++..+.. .|.......|.+|++.|++++++.+....+++.+.+.+. ..+....+|.+.|.+.++++++..++.
T Consensus       126 ~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        126 LLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             HHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            122222322222 233334678899999999999998888777764444332 222223477778888777766655555


Q ss_pred             HhhcccCC
Q 011275          467 KRNVVETK  474 (489)
Q Consensus       467 ~~~~pet~  474 (489)
                      ...+||++
T Consensus       205 ~~~~~~~~  212 (452)
T PRK11273        205 FAMMRDTP  212 (452)
T ss_pred             HHHccCCH
Confidence            55666653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.93  E-value=5.7e-08  Score=95.20  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             HHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011275          315 VFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  391 (489)
Q Consensus       315 ~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      +.++.+.+   .++......++..++.++.|+++||+|||+.+..+.+...++..+......     .  .+......++
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~  100 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-----S--YSVLLLLRLF  100 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-----h--HHHHHHHHHH
Confidence            44455554   356667778889999999999999999999988887777766655433220     1  1111111222


Q ss_pred             HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhH-HHHHHHHH
Q 011275          392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLY-SIFGTFCL  460 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~-~~~~~~~~  460 (489)
                      .+..  .+..+....+.+|.+|++.|++..++.....+++..+++.+.+.+...          .+|.+.+ ...+.+..
T Consensus       101 ~g~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       101 IGIA--GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHh--chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            2222  122233455788999999999999999888888877777666555442          2566666 43344443


Q ss_pred             HHHHHHHhhcccC
Q 011275          461 MAVAFVKRNVVET  473 (489)
Q Consensus       461 ~~~~~~~~~~pet  473 (489)
                      +..+......+|+
T Consensus       179 ~~~~~~~~~~~~~  191 (366)
T TIGR00886       179 LPALLIFFVGADT  191 (366)
T ss_pred             HHHHHHHHhcccC
Confidence            3333333334443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.92  E-value=3.3e-08  Score=99.08  Aligned_cols=138  Identities=12%  Similarity=0.079  Sum_probs=92.3

Q ss_pred             hcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011275          318 SAGLSSG---LANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       318 ~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      ..+.+..   .......+...++.+++|+++||+ |||+.+.++.+...++..++.....    .....+   ..+.+..
T Consensus        39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~----~~~~~~---l~l~li~  111 (493)
T PRK15462         39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI----HPSFLY---LSLAIIV  111 (493)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc----chhHHH---HHHHHHH
Confidence            3455543   344455567778889999999999 9999988887777766544321110    001111   1111111


Q ss_pred             HHHhcCccccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 011275          394 LTFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      .+.+ ...|....+.+|+||++  .|.++.++.....++++.++|.+.+.+.+..|+...|.+.++..+++.
T Consensus       112 iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        112 CGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             Hhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            2211 12355567899999986  799999999999999999999999888888888888877665444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=8.8e-08  Score=91.88  Aligned_cols=151  Identities=18%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011275          311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+++-++.+.+.   |+....++.+..+++++-..+.||+.||++++....++.++..+....++..      . +.+.
T Consensus        35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~------~-Ll~a  107 (394)
T COG2814          35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA------V-LLLA  107 (394)
T ss_pred             chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHH------H-HHHH
Confidence            4566667777764   4566778899999999999999999999999888877777777665543321      1 1111


Q ss_pred             HHHHHHHHHhcC-ccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          388 GMLMFVLTFALG-AGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       388 ~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                         -...+.+.| ..++.....+++.|+++|++++++...-..+...++.-+...+-+.+||+.+|.+.+.+.++..+..
T Consensus       108 ---R~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~  184 (394)
T COG2814         108 ---RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL  184 (394)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence               111111111 1235566889999999999999999987777666666665666678999999999999999999888


Q ss_pred             Hhhcc
Q 011275          467 KRNVV  471 (489)
Q Consensus       467 ~~~~p  471 (489)
                      ...+|
T Consensus       185 ~~~lP  189 (394)
T COG2814         185 WKLLP  189 (394)
T ss_pred             HHhCC
Confidence            88899

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.89  E-value=5.2e-08  Score=96.72  Aligned_cols=148  Identities=16%  Similarity=0.110  Sum_probs=97.4

Q ss_pred             HHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHH
Q 011275          316 FKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMF  392 (489)
Q Consensus       316 ~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (489)
                      .++.+.+.   |+......+...+..++.|+++||+|||+++..+.....++........     + . ..+. ....+.
T Consensus        38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-----~-~-~~l~-~~~~l~  109 (400)
T PRK11646         38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-----E-P-WLLW-LSCILS  109 (400)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-----c-H-HHHH-HHHHHH
Confidence            34455554   3444444566666788899999999999998888777766665543221     1 1 1111 111222


Q ss_pred             HHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Q 011275          393 VLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVE  472 (489)
Q Consensus       393 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pe  472 (489)
                      +...+ ...|....+..|.+|++.|+++.++.....+++..++|.+.+.+. ..++.+.|.+.++.+++..+......||
T Consensus       110 g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        110 GLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            22221 123445567889999999999999999999999999998877776 6788888877777666555444445666


Q ss_pred             C
Q 011275          473 T  473 (489)
Q Consensus       473 t  473 (489)
                      .
T Consensus       188 ~  188 (400)
T PRK11646        188 Y  188 (400)
T ss_pred             c
Confidence            4

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.89  E-value=3.5e-08  Score=93.67  Aligned_cols=157  Identities=14%  Similarity=0.149  Sum_probs=116.9

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      |.+..+.+++.   |.......+..-++.++.|.++||.+.|..+.+++++.++..+++....        ...+.....
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--------s~~~~~~l~  124 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--------SLFLFAVLW  124 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--------HHHHHHHHH
Confidence            44445555553   4566777888889999999999999999999888888888877765443        122333334


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF--LRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .+.+...++|+.|... .+..-||++.||+..++=+..+++|+.+.+.+.  .....+.++...|.+-++++++..++.+
T Consensus       125 ~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         125 VLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             HHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            4445566777666654 577889999999999999999999999999887  6666667888999988888877766554


Q ss_pred             h---hcccCCCCCH
Q 011275          468 R---NVVETKGKSL  478 (489)
Q Consensus       468 ~---~~pet~~~~~  478 (489)
                      +   -.||+.|.+-
T Consensus       204 ~~~rd~Pqs~GLP~  217 (448)
T COG2271         204 FLLRDRPQSEGLPP  217 (448)
T ss_pred             HHhCCCccccCCCC
Confidence            3   3577777654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.89  E-value=1.7e-08  Score=101.26  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhh--HHHHHhHHHHHHHHHHHHh--------cchHHHHH
Q 011275           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASISAT--------TRNLIGML  145 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~~~~~~~~i~~~l~~~--------~~~~~~l~  145 (489)
                      .-.+++|++..+.  ....-...+..++|++++|++.||+|.|  +++..+++++.+..+...+        .++-+.+.
T Consensus       307 ~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~  384 (477)
T PF11700_consen  307 YATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW  384 (477)
T ss_pred             HHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence            3345888876653  3444455667789999999999999999  8998888888666666655        67788888


Q ss_pred             HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011275          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~  225 (489)
                      +.-++.|+..|+.++...++.+|+.|+++.+.+.+++.+..-....+||++-+.+.+..+.-|+.++...+..++.+++.
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998877766655545777665444444444444


Q ss_pred             hcccC
Q 011275          226 VFCAE  230 (489)
Q Consensus       226 ~~~pE  230 (489)
                      +.+++
T Consensus       465 ~~v~~  469 (477)
T PF11700_consen  465 FFVDV  469 (477)
T ss_pred             hhccc
Confidence            44443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.89  E-value=7.7e-08  Score=94.97  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.|.+   .++......++..++.++.|++.||+|||+++..+....+++..+.....     + ... +.+ .
T Consensus        26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-----~-~~~-l~~-~   97 (382)
T PRK10091         26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-----S-YLM-LAI-G   97 (382)
T ss_pred             hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-----c-HHH-HHH-H
Confidence            34444555544   35566777899999999999999999999998888777666655443321     1 111 111 1


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ..+.+.+.+. ..+....+..|.+|++.|++.++.......++..+++.+...+.+..++++.|.+.+++.++..+....
T Consensus        98 r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091         98 RLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            1122221111 123344567899999999999999888888888888777666667778888888888877766665566


Q ss_pred             hcccCCC
Q 011275          469 NVVETKG  475 (489)
Q Consensus       469 ~~pet~~  475 (489)
                      .+||.+.
T Consensus       177 ~lp~~~~  183 (382)
T PRK10091        177 WVPDIRD  183 (382)
T ss_pred             hCCCCCc
Confidence            7888644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.88  E-value=4.5e-08  Score=98.34  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-ccccccccc
Q 011275          330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-AGPVPSLLL  408 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  408 (489)
                      ..++..+|+++.|+++||+|||+.+..+.+..+++..+.....+...........  ...+-+..+.+.| ..|....++
T Consensus        72 ~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~R~l~G~g~g~~~~~~~~~i  149 (432)
T PRK10406         72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPAL--LLLARLFQGLSVGGEYGTSATYM  149 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH--HHHHHHHHHhhhhhhHhhHHHHH
Confidence            3455569999999999999999999888777777666544322110000000111  1112222233332 346667799


Q ss_pred             cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      +|.+|++.|+...++.......+..+++.+...+.        ...||+..|.+.++..++. .+....+||++.
T Consensus       150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~  223 (432)
T PRK10406        150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ  223 (432)
T ss_pred             HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence            99999999999988876555555555444322221        2468888887766666554 344556788754

>PRK10504 putative transporter; Provisional

Probab=98.88  E-value=9.9e-08  Score=97.04  Aligned_cols=156  Identities=14%  Similarity=0.016  Sum_probs=103.7

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011275          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ...+.+.++.+.+.   ++......++..++.++.|+++||+|||+++..+.....++.......      .....  .+
T Consensus        31 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~--l~  102 (471)
T PRK10504         31 TALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS------GTLNE--LL  102 (471)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh------CCHHH--HH
Confidence            34555666666653   345556667888899999999999999998877766555544433221      11111  11


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+++.+. ..|....+..|.+|++.|+++.++.....+++..+++.+.+.+.+..+|.+.|.+...++.+..+..
T Consensus       103 ~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~  181 (471)
T PRK10504        103 LARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT  181 (471)
T ss_pred             HHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            112222222211 2345566788999999999999999999999999999888888888888888877766666665555


Q ss_pred             HhhcccCC
Q 011275          467 KRNVVETK  474 (489)
Q Consensus       467 ~~~~pet~  474 (489)
                      ....|+.+
T Consensus       182 ~~~~~~~~  189 (471)
T PRK10504        182 LMLMPNYT  189 (471)
T ss_pred             HHhCCCcc
Confidence            55555543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.87  E-value=5e-11  Score=120.48  Aligned_cols=156  Identities=17%  Similarity=0.130  Sum_probs=91.8

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHH----hcch------
Q 011275           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA----TTRN------  140 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~----~~~~------  140 (489)
                      ....+.+.++.+.+.+ ...   .....+...++.++...+.||+|||+.++.+..+.+++.+..+    ..++      
T Consensus       273 ~~~~~~i~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  273 FYYSPSIFENAGISNS-FLA---TLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             cccccccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344666666666544 111   1122233446677778999999999999999888877776664    1111      


Q ss_pred             HHHHHHHHHH-HhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011275          141 LIGMLLGRFV-VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       141 ~~~l~~~R~l-~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      ...+...... .+++. +..+....+..|.+|.+.|++..++......++..+++.+...+.+..+.+........+..+
T Consensus       349 ~~~i~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             cccceeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            1222221111 22222 233455678899999999999999888777777666665544444333212222222333344


Q ss_pred             HHHHHhhcccCC
Q 011275          220 ILCLAMVFCAES  231 (489)
Q Consensus       220 ~~~~~~~~~pEs  231 (489)
                      ...+..+++|||
T Consensus       428 ~~i~~~~~lpET  439 (451)
T PF00083_consen  428 AIIFVYFFLPET  439 (451)
T ss_pred             HHhheeEEEeeC
Confidence            444566789999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.87  E-value=1.2e-07  Score=93.92  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=99.9

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++........     + .. .+. ...
T Consensus        32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~-~l~-~~~  103 (394)
T PRK11652         32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----S-LT-VLI-AAS  103 (394)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HH-HHH-HHH
Confidence            44455555553   4555667788889999999999999999998877666665554433221     1 11 111 111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+++.+ ...+....+..|.+|.+.|+.+.++......++..++|.+...+.+..++...|.+.+++.++........
T Consensus       104 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        104 AIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111 11234445678889999999999988877777777788777666667788888887777666555545556


Q ss_pred             cccCCCC
Q 011275          470 VVETKGK  476 (489)
Q Consensus       470 ~pet~~~  476 (489)
                      .||++..
T Consensus       183 ~~~~~~~  189 (394)
T PRK11652        183 MPETRPA  189 (394)
T ss_pred             CCccCcc
Confidence            7886543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=1.2e-08  Score=99.28  Aligned_cols=150  Identities=20%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             HHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          314 SVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+   .++......++..++.++.|+++||+|||+++..+....+++.......     .+..   ..+...+
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~   93 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFW---LLLIARF   93 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHH---HHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHH---HHhhhcc
Confidence            344444544   3456666778899999999999999999998888877777763333321     1111   1112222


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Q 011275          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+.+. ....+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.++++++..++.....
T Consensus        94 l~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen   94 LLGIGS-GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccccc-ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence            222222 1234556678999999999999999999999999999988877766677788888888888887766433334


Q ss_pred             cc
Q 011275          471 VE  472 (489)
Q Consensus       471 pe  472 (489)
                      +|
T Consensus       173 ~~  174 (352)
T PF07690_consen  173 PE  174 (352)
T ss_dssp             --
T ss_pred             hh
Confidence            33

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.86  E-value=5.5e-08  Score=95.79  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   +.......++..++.++.|+++||+|||+.+..+.....++........     + ...  .....
T Consensus        15 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----~-~~~--~~~~~   86 (377)
T PRK11102         15 PVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----T-IDQ--LIYMR   86 (377)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HHH--HHHHH
Confidence            34444455543   4555667788889999999999999999998887776666655543321     1 111  11111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+.+.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.+.++++..++....
T Consensus        87 ~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         87 FLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            22222211 12344556789999999999999999999999999888887777777888888888887777766665566


Q ss_pred             cccCC
Q 011275          470 VVETK  474 (489)
Q Consensus       470 ~pet~  474 (489)
                      +||++
T Consensus       166 ~~~~~  170 (377)
T PRK11102        166 IPETL  170 (377)
T ss_pred             CCccC
Confidence            77764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.85  E-value=4e-08  Score=96.98  Aligned_cols=131  Identities=11%  Similarity=0.024  Sum_probs=106.2

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHh
Q 011275           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.+|.|.+.+  +.|...+...++..++.++.|++.||+|+|+++..+.++.+++.++.+.+++.+.+++..++.|
T Consensus       227 ~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  304 (382)
T PRK11128        227 FSAIYWQAAGYSAS--TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34445567776643  4577777777788889999999999999999999999988888888888899999999999999


Q ss_pred             hhcccccccccchhcccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCch
Q 011275          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW  206 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~  206 (489)
                      ++.+...+....++.+. +++++++..+.+. ....+|..+|+.+++.+.+..++
T Consensus       305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            99998888888888886 5666788888775 66677878888888888776663

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.85  E-value=9.8e-07  Score=85.17  Aligned_cols=180  Identities=16%  Similarity=0.135  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhhhccceeeccch-hhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPL-ESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ..++|+..|+..+.=  .-|.+ |.+.+ |.|++.++... -+.....-.+...-++...+.|..|-||+++++.+...+
T Consensus         7 ~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~-~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~   83 (412)
T PF01770_consen    7 TLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNN-EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII   83 (412)
T ss_pred             HHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345565556554332  11222 33333 36777665432 344555556677788999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHH
Q 011275          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRI  209 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~wr~  209 (489)
                      ...+.-+.++...+-+.-++-|++.+... +..+|+--..|+++--++.+....+..+|-..+.++|-.+....+ ..+.
T Consensus        84 t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~  162 (412)
T PF01770_consen   84 TWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ  162 (412)
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999999999887654 556777777788887888888888888887777777765443221 1466


Q ss_pred             HHHHHHHHHHHHHHHhhcccCChHHHH
Q 011275          210 CFWVSIVPAAILCLAMVFCAESPHWLY  236 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~pEsp~~l~  236 (489)
                      .+++......+.+++.+++|..++-+.
T Consensus       163 L~~isl~~~~~a~~~~~fLP~~~~S~~  189 (412)
T PF01770_consen  163 LNYISLASVSLALLIALFLPMPKRSLF  189 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence            666665555556666677887665444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.84  E-value=2.7e-08  Score=97.74  Aligned_cols=153  Identities=13%  Similarity=0.080  Sum_probs=102.1

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+   .++......++..++.++.|+++||+|||+.+..+.+...++..+......        .+......
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   90 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------LWVMAALW   90 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------HHHHHHHH
Confidence            3444444544   345666778889999999999999999999988887776666555443221        11111112


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGL-LFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+.+.+.+ ...|....+..|.+|++.|++..++......++..+++. ....+.+..++...|.+.+.++++..+....
T Consensus        91 ~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881        91 ALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            22222111 234566678999999999999999999998898888884 4444445667888887777776666555555


Q ss_pred             hcccCC
Q 011275          469 NVVETK  474 (489)
Q Consensus       469 ~~pet~  474 (489)
                      ..||++
T Consensus       170 ~~~~~~  175 (379)
T TIGR00881       170 LLRDSP  175 (379)
T ss_pred             eeCCCc
Confidence            566543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.84  E-value=1.1e-07  Score=95.71  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      ++......++..++.++.|+++||+|||+.+..+.+..+++......... . ..  ..........+.+...+.. .+.
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~l~~~~~l~g~~~g~~-~~~  138 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW-A-TS--SIAIMFVLLFLNGWFQGMG-WPP  138 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc-c-cc--hHHHHHHHHHHHHHHhhcc-hHH
Confidence            45666777888899999999999999999887776666665544322110 0 01  1111111112222222222 233


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      ......|.+|++.|++++++.+....+++.+++.+.....+ ..+|+..|.+.++++++..+.....+||+
T Consensus       139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            44567899999999999999998888888888776554443 35788888888887776655555556664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.83  E-value=2.9e-08  Score=100.77  Aligned_cols=144  Identities=20%  Similarity=0.195  Sum_probs=122.2

Q ss_pred             eccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHH
Q 011275           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      +...+|.+.++ +|.  +....|++.+.+.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-
T Consensus       237 ~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            34456777654 444  455679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~  216 (489)
                      ++.|++.........+.+-+..|++.|||..+++.+....+..+|.++.+.+.+..+- +..+.++++
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~-~~al~~a~~  381 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV-RTALLIAGA  381 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHH
Confidence            9999998888878888899999999999999999999998888888888877776663 666665443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.81  E-value=1.3e-07  Score=93.65  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=89.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      ++......+...+..++.|+++||+|||+++..+....+++.........        ..   ...++.+.+ .....|.
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--------~~---~~r~l~G~~-~a~~~pa  108 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--------PL---LAYGLVGIG-AAAYSPA  108 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHH-HHHHHHH
Confidence            45556677888899999999999999999998887766665544322211        01   111111111 2223466


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCC
Q 011275          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  474 (489)
                      ...+++|++|++.|+++.|+......++..++|.+.+.+.+.. +...+.+.+.+.++. .+..+.+||.+
T Consensus       109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            6778999999999999999999998888888888877766643 333443333333333 33345677654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.80  E-value=5.7e-08  Score=97.74  Aligned_cols=112  Identities=18%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc-chHHHHHHHHHHHhhhcccccccccchhc
Q 011275           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  167 (489)
                      ..++..+...++..++.+++++++||+|||+++..+.++.+++.++..+. .+.+.+.+..++.|++.+...+....+++
T Consensus       258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (437)
T TIGR00792       258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVA  337 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777788889999999999999999999999988888877766654 45666777888999999888888888888


Q ss_pred             ccCC-------cccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          168 EVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       168 e~~p-------~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                      |..+       ++.+|...++++....+|..+++.+.+.+
T Consensus       338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8875       45678999999988888877776665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.79  E-value=1e-06  Score=82.82  Aligned_cols=110  Identities=21%  Similarity=0.201  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      +.+-.+....|..+...+.    .+.+++|++.++  .+.+....+....+...+.|.++||+|||+..+...++.++.+
T Consensus        40 l~vY~La~~aDWLQGpY~Y----~LY~~yg~~~~q--Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc  113 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLY----ALYESYGFSEHQ--IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC  113 (354)
T ss_pred             HHHHHHHHHHHHhhcchhH----HHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            4455666666666554333    345678887554  3444555555666888899999999999999999999998888


Q ss_pred             HHHHhcchHHHHHHHHHHHhhhcccccccccc-hhccc
Q 011275          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEV  169 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~  169 (489)
                      + +-..++++.++++|++.|++......+--. ++.|.
T Consensus       114 l-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen  114 L-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH  150 (354)
T ss_pred             H-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 556789999999999999998887765444 35665

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.78  E-value=3.4e-08  Score=98.04  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcc
Q 011275           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ..|...+...+...++.+..|++.||+|||+.+.++.++.+++..+...++|.+.+++.++++|++..........+..|
T Consensus       255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  334 (396)
T TIGR00882       255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS  334 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777788889999999999999999999999888888887888899989999999999876665566667788


Q ss_pred             cCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011275          169 VSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       169 ~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~  223 (489)
                      ..+++.|+...+. ++....+|..+++++++.+.+..| |+..|.+.++..++..+
T Consensus       335 ~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       335 QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            8888888876665 567888898888888888777666 68888876555544433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.76  E-value=9.7e-08  Score=95.97  Aligned_cols=134  Identities=19%  Similarity=0.113  Sum_probs=88.0

Q ss_pred             eccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHH----HHhcchHHHH
Q 011275           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI----SATTRNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l----~~~~~~~~~l  144 (489)
                      +....|.+.++ +|++.+  +.++....+.++..++.++.|+++||+|||+++..+.++..+...+    ....+++..+
T Consensus       257 ~~~~~p~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAA--DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM  334 (434)
T ss_pred             HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            44456766654 677644  4466777777888899999999999999999987765443332211    1123344444


Q ss_pred             HHHHHHHhhhcccccccccchhcccCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCc
Q 011275          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~  205 (489)
                      .+..++.|++.|...+....++.|.+|+++|+...++. +.+..++..++|.+.+.+.+..+
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            45556666666665555667889999999999999885 44444434445655555555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.76  E-value=4.8e-08  Score=92.90  Aligned_cols=170  Identities=15%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             HHHHhhhhccceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~  135 (489)
                      .-..+.||.+.-+ ... ..+.+ ++|++..  +..+..-...+..++|+++.|+|.||+|-|+++..++++..+.++..
T Consensus       260 A~~~~~DGv~til-~~~-~~fg~~~~gls~~--~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~  335 (438)
T COG2270         260 ARFFYIDGVNTIL-AMG-GVFGAADLGLSST--ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL  335 (438)
T ss_pred             HHHHHHhhHHHHH-HHH-HHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH
Confidence            3334556654422 111 22444 8888644  45566667777888999999999999999999999999999988888


Q ss_pred             HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011275          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~  215 (489)
                      -+...-..+.++-.+.|...|+..+.+..|.++..|+++-+++.++|++..-.+...||.+-..+.+..+.-|.-+....
T Consensus       336 ~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~  415 (438)
T COG2270         336 IFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSII  415 (438)
T ss_pred             HHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            77777777778889999999999999999999999999999999999999998888888876655554444566555433


Q ss_pred             HHHHHHHHHhhcccC
Q 011275          216 VPAAILCLAMVFCAE  230 (489)
Q Consensus       216 ~~~~~~~~~~~~~pE  230 (489)
                      +...+-++....+|+
T Consensus       416 vll~iGl~~L~~v~~  430 (438)
T COG2270         416 VLLLIGLLLLLRVKV  430 (438)
T ss_pred             HHHHhhHhhEEeecC
Confidence            333333333444444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.74  E-value=4.7e-08  Score=91.21  Aligned_cols=143  Identities=16%  Similarity=0.140  Sum_probs=92.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .|.....+++++++.+...|.++||+|||+++.++.++..+...+......          +......-+..+..-|.-.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~----------F~afv~aR~l~Gi~kgnl~  139 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN----------FAAFVLARFLGGIFKGNLS  139 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhccCchH
Confidence            456667788999999999999999999999998887777765444332211          1101111222222233334


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCch-hHHHHHHH-HHHH-HHHHHhhcccCCC
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---QLGPQL-LYSIFGTF-CLMA-VAFVKRNVVETKG  475 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~-~~~~-~~~~~~~~pet~~  475 (489)
                      +..++++|+++++.|+.+++.......+|..++|++.+++..   ..|..+ ++-.+.++ .... ......++|||-.
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            566799999999999999999999988888889988766544   233222 22122222 2222 3344567999944

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.72  E-value=2.3e-07  Score=94.07  Aligned_cols=129  Identities=12%  Similarity=0.055  Sum_probs=91.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-cc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-AG  401 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  401 (489)
                      +.......++..++.+++|+++|| +|||+++..+....+++..+.....     +   .........+  .+.+.| ..
T Consensus        51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~-----~---~~~~~~~~~l--~g~g~g~~~  120 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI-----Y---PDLIFYGLGT--IAVGSGLFK  120 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-----c---HhHHHHHHHH--HHhcccccc
Confidence            455666778889999999999999 8999999888877776665443221     1   1111111222  222222 34


Q ss_pred             ccccccccccCCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 011275          402 PVPSLLLPEIFPSRI---RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       402 ~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  462 (489)
                      |....+.+|.+|++.   |+++.++.....++++.+++.+.+.+.+..++...|.+.++.++++
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            566678889998754   8999999999999999999999888888888888887766554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.72  E-value=5e-07  Score=91.78  Aligned_cols=121  Identities=12%  Similarity=0.066  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011275          330 VGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  408 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (489)
                      .........+++|+++|| +|||+++..+.+...++..........     ..  .......+.+++ .....|....+.
T Consensus        59 ~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~--ll~~~~~l~~ig-~g~~~~~~~~li  130 (489)
T PRK10207         59 FAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-----PD--LIFIALGTIAVG-NGLFKANPASLL  130 (489)
T ss_pred             HHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-----hh--HHHHHHHHHHhc-cccccCCHHHHH
Confidence            334445556789999999 999999999988887776655432210     11  111112222111 112345667789


Q ss_pred             cccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 011275          409 PEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  458 (489)
Q Consensus       409 ~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  458 (489)
                      .|.||++  .|+.+.++.....++++.++|.+.+.+.+..||++.|.+.++.
T Consensus       131 ~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        131 SKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            9999887  4578899999999999999998888888888988888775443

>PRK11043 putative transporter; Provisional

Probab=98.72  E-value=4.7e-07  Score=89.99  Aligned_cols=146  Identities=17%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          314 SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+.   +.......++..++.++.|+++||+|||+.+..+.....++........     + ... + .....
T Consensus        31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~-~~~-l-~~~~~  102 (401)
T PRK11043         31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----S-AAQ-L-LVLRF  102 (401)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----C-HHH-H-HHHHH
Confidence            3445555543   4555666788889999999999999999998877666555544433221     1 111 1 11111


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      +.+.+.. ...+....+..|.+|++.++...+.......++..++|.+...+.+..++...|.+.+++.++..+....
T Consensus       103 l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        103 VQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            2111111 1122334567899999999999998888888888888888877777788888887777766665544433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=9.9e-06  Score=79.63  Aligned_cols=102  Identities=14%  Similarity=-0.050  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcc
Q 011275           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (489)
Q Consensus        94 ~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~  173 (489)
                      .++....+.+..++.+++.|+.|.|..+.++..++.......- -.|-+-+.+.-.+.|+|.+..+.....|++|.++++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            5666677789999999999999999999999998877655553 445666888999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHh
Q 011275          174 VRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       174 ~Rg~~~~~~~~~~~~G~~~~~~~  196 (489)
                      .+.+..++.-.....+.++|.+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHh
Confidence            99999988766666666655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.70  E-value=3.7e-06  Score=83.61  Aligned_cols=119  Identities=10%  Similarity=0.047  Sum_probs=73.1

Q ss_pred             hcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011275          318 SAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  394 (489)
Q Consensus       318 ~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (489)
                      ..+++..   +......++..++.+..|++.||+|.|++..++.+...+............. ++....+.+.  .+.++
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~-~s~~~lli~r--~l~Gi  140 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN-TPFGIFIVIA--LLCGF  140 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC-CCHHHHHHHH--HHHHH
Confidence            3455543   3444555666677788899999999999888877766665554443211111 1121211111  11111


Q ss_pred             HHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011275          395 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       395 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                        ..+..+.....+++.||+++||++.|+....++++..+.+.+.+.
T Consensus       141 --gg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        141 --AGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             --HHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              112233445578899999999999999988888888776665544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.70  E-value=1.6e-07  Score=95.30  Aligned_cols=143  Identities=15%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .+.......++..++.+++|++.||+|||+.+..+.+...++..+.......   . .  ...+..-++.+++ .....|
T Consensus        78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~-~--~~l~~~r~~~G~~-~~~~~~  150 (465)
T TIGR00894        78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG---G-I--ALVVFCRVIQGLA-QGSVSP  150 (465)
T ss_pred             hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc---C-c--hHHHHHHHHHHHh-cccchh
Confidence            3556666778889999999999999999998887766655554443222110   0 1  1111111122221 112345


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhccc
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLMAVAFVKRNVVE  472 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pe  472 (489)
                      ....+.+|.+|++.|++..++......++..+++.+...+.+.. ++...|.+.+++.++..+..+...||
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            66678999999999999999999999999999998888777774 88888888888776665554444444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=6.6e-07  Score=91.87  Aligned_cols=157  Identities=20%  Similarity=0.140  Sum_probs=93.5

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchH--------
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--------  141 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--------  141 (489)
                      .....+++.+..+.+.+.   .+......+...++..+...+.||+|||+.++.+...+.++.++.+.....        
T Consensus       314 ~~~Y~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~  390 (513)
T KOG0254|consen  314 VFYYSTTIFKSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSS  390 (513)
T ss_pred             EEeehHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            444556777777776543   233333444455777778999999999999999999999998887643211        


Q ss_pred             ---HH---HHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH-H
Q 011275          142 ---IG---MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-S  214 (489)
Q Consensus       142 ---~~---l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~-~  214 (489)
                         ..   ....-++..+..| ..++...+.+|.+|.+.|++..++......+....-...........+ +...|.. .
T Consensus       391 ~~~~~~~~~~~~~~v~~f~~g-~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~  468 (513)
T KOG0254|consen  391 KGAGWLAIVFLCLFIFSFAIG-WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFG  468 (513)
T ss_pred             cchhHHHHHHHHHHHHHHhcc-cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHH
Confidence               11   1223333333333 334455788999999999999888766555553322222122211111 1223322 2


Q ss_pred             HHHHHHHH-HHhhcccCC
Q 011275          215 IVPAAILC-LAMVFCAES  231 (489)
Q Consensus       215 ~~~~~~~~-~~~~~~pEs  231 (489)
                      ++..+... +..+++|||
T Consensus       469 ~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  469 GICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHHHHHHHheEEcccC
Confidence            33333333 566789998

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=1.3e-07  Score=87.92  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhh
Q 011275          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG  179 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~  179 (489)
                      .-.-|.++.+++.||+|||+.+..+.++++++.++...+.+-....+.-|..-+...+.+.+.+.|..|.+|...|+...
T Consensus       393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence            34568899999999999999999999999999998877665444443334444445556667888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q 011275          180 AFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       180 ~~~~~~~~~G~~~~~~~~~  198 (489)
                      +.-....-+|.++.|+++.
T Consensus       473 GtcSsmaRIggI~~p~iA~  491 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIAM  491 (528)
T ss_pred             hhhhhHHhhhhhhhhHHHH
Confidence            9999999999999998873

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.68  E-value=9.1e-07  Score=90.32  Aligned_cols=118  Identities=19%  Similarity=0.134  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc
Q 011275          336 LGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS  414 (489)
Q Consensus       336 ~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  414 (489)
                      ...+++|+++|| +|||+.+..+.+...++..+.....     ... . .......+.+++.+. ..|....+..|.+|+
T Consensus        72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~~~-~-~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~  143 (500)
T PRK09584         72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----HDA-G-IVYMGMATIAVGNGL-FKANPSSLLSTCYEK  143 (500)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----ccH-H-HHHHHHHHHHHhhhc-ccCCHHHHHHHhcCC
Confidence            334689999999 5999998888777776654443221     111 1 111112222222221 235555688999986


Q ss_pred             hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 011275          415 RI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  461 (489)
Q Consensus       415 ~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  461 (489)
                      +.  |..+.++.+...++++.++|.+.+.+.+..|+.+.|.+.++..++
T Consensus       144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            43  456788888889999999999988888888988888776653333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.67  E-value=6.3e-07  Score=101.33  Aligned_cols=143  Identities=14%  Similarity=0.095  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccc
Q 011275          325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  404 (489)
Q Consensus       325 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      +......+..++.++++|+++||+|||+++........+..........  . ..  .+..+...++.+++ .....|..
T Consensus        56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--~-~s--~~~l~~~~~l~gi~-~a~~~p~~  129 (1140)
T PRK06814         56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--L-NS--VPLLFAALFLMGIH-SALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--H-hh--HHHHHHHHHHHHHH-HHhhchHH
Confidence            3445566778888999999999999999754322221111111111100  0 11  11111112222222 22345777


Q ss_pred             cccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCC
Q 011275          405 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       405 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  474 (489)
                      ..++.|++|++.|+.++|+..+...++..++|.+.+.+....++...|...+.+.+++ +++...+||++
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  198 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTG  198 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCC
Confidence            8899999999999999999999999999999998888877777777763333333333 33334455543

>TIGR00896 CynX cyanate transporter

Probab=98.67  E-value=9.1e-08  Score=93.43  Aligned_cols=135  Identities=17%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHH
Q 011275           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      ...+|.+.++.|.+.  .+.+...+.+.++..++.++.|+++||+ +||+.+..+.++.+++.++..+..+..... .-+
T Consensus       217 ~~~lp~~~~~~g~~~--~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  293 (355)
T TIGR00896       217 IGWLPAILISHGASA--ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL  293 (355)
T ss_pred             HHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence            345677777777653  3567888899999999999999999999 567777777777777776666655433322 346


Q ss_pred             HHhhhcccccccccchhcccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011275          150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr  208 (489)
                      +.|++.|...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7899998888876666665554 5667888888777777777778877776666555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.66  E-value=2.4e-07  Score=87.79  Aligned_cols=157  Identities=28%  Similarity=0.376  Sum_probs=117.4

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcch-
Q 011275           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-  140 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~-  140 (489)
                      ....+........+.+..+++.+......++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          13 LLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            3335555566677777777654321024578899999999999999999999999998888888776666777777776 


Q ss_pred             -HHHHHHHHHHHhhhcccccccccchhcccCCc-ccchhhhhHHHH-HHHHHHHHHHHhhcccccC-CchhHHHHHHHHH
Q 011275          141 -LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIV  216 (489)
Q Consensus       141 -~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~~~-~~~wr~~f~~~~~  216 (489)
                       ...+++.|+++|++.|...+....++.|+.|+ ++|+...+.... ...+|...+++++..+... ...||+.|.....
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence             88899999999999999999999999999998 678888888877 5777777776655443322 1227886665443


Q ss_pred             HH
Q 011275          217 PA  218 (489)
Q Consensus       217 ~~  218 (489)
                      ..
T Consensus       173 ~~  174 (338)
T COG0477         173 LG  174 (338)
T ss_pred             HH
Confidence            33

>PTZ00207 hypothetical protein; Provisional

Probab=98.66  E-value=3.3e-06  Score=86.35  Aligned_cols=153  Identities=15%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             HHHHhHHHHHHhcCCCcchHHHHHHHHHH--HHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHH
Q 011275          307 AIFYFSSSVFKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  384 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (489)
                      ....+.+.+.+..+.+.........++..  ...+..|++.||+|+|+++.++.+...++.++............... +
T Consensus        45 ~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l  123 (591)
T PTZ00207         45 AFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-L  123 (591)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-H
Confidence            33455666667777765443333333322  34456899999999999999988888887766554322111111111 1


Q ss_pred             HHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 011275          385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      .+ ..++.+.+.+. ..+.....+.+.|| +.||++.|+......+++.+.+.+...+.. .++...+.+.+++.++..+
T Consensus       124 ~l-~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        124 SV-YNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HH-HHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            11 11111111111 11222335678887 789999999999999988876655544433 2344556666665555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.63  E-value=2.1e-07  Score=105.40  Aligned_cols=127  Identities=18%  Similarity=0.142  Sum_probs=106.0

Q ss_pred             chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 011275           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~  151 (489)
                      .+|.+ .+++|.+.. ...+++.+...+|.++|+++.|+++||+++|+++.++.++.+++.++..+..+.+.+++.-++.
T Consensus       254 ~~~~~~~~~~g~s~~-~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        254 NFPAYAKEVLGLDNT-FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             hhHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444 445666543 1457888889999999999999999999999999888888888888888888888888899999


Q ss_pred             hhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                      |++.+...+....++.+..|++.||++.++.++...+|..+++.++..+
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888889999999999999999999988888887777666544

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.62  E-value=1.8e-06  Score=88.06  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             hHHHHHHhcCCCcchHHHHHHHHHH-HHHHHHHHHHhhc-----CCchh-HHHhhHHHHHHHHHHHHHhhccCCCchhhH
Q 011275          311 FSSSVFKSAGLSSGLANVFVGIANL-LGSVVAMVLMDKL-----GRKAL-LQWSFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~i~~~-~g~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      ..+..+++.|.+.........++.. ++.++.+.++||+     |||+. +..+.+...++........    +.....+
T Consensus        34 ~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~----~~~~l~~  109 (491)
T PRK11010         34 TLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE----PGTQLRW  109 (491)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC----CcchHHH
Confidence            3455566677765544333222222 6789999999999     99886 4444444444433332221    1111111


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchhHHHHHHHHHHH
Q 011275          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~  462 (489)
                      +.+. .++.... .....+....+..|.+|+++|+++.++.....+++..+++.+...+.+ ..||...|.+.+++.++.
T Consensus       110 l~~~-~~l~~~~-~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~  187 (491)
T PRK11010        110 LAAL-AVVIAFC-SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPC  187 (491)
T ss_pred             HHHH-HHHHHHH-HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence            1111 1111222 223344556789999999999999999999999998888887777766 468888888888776666


Q ss_pred             HHHHHhhcccCC
Q 011275          463 VAFVKRNVVETK  474 (489)
Q Consensus       463 ~~~~~~~~pet~  474 (489)
                      .+... ..||++
T Consensus       188 ~l~~~-~~~e~~  198 (491)
T PRK11010        188 IIATL-LAPEPT  198 (491)
T ss_pred             HHHHH-hcCCCc
Confidence            44433 467764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.62  E-value=3.2e-07  Score=90.81  Aligned_cols=144  Identities=15%  Similarity=0.004  Sum_probs=101.1

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHH-HHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh------cchHHHHHH
Q 011275           74 LESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGMLL  146 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~-~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~------~~~~~~l~~  146 (489)
                      .+.+.+|.|++.+  +.|+...... .+..+|.++.|++.||+|+|+++..+.++.++.......      ..+...+..
T Consensus       231 ~~~~l~~~G~s~~--~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       231 SKLYLVDAGWPLE--WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             hhHHHHhcCCCHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            3445667787654  4466666554 466788999999999999999998776655333222211      233444455


Q ss_pred             HHHHHhhhcccccccccchhcccCCc-ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011275          147 GRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      .-.+.+++.|...+.....+.+..++ +++|+..++.+....+|..+++.+++.+.+..| ++..|+......++
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~  382 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVL  382 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHH
Confidence            55666777777777777777777766 889999999999999999999999888776656 57888776544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=1.6e-06  Score=86.31  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+   .++......++..++++..+++.||+|||+.+..+....+++..+......   ......+  +..
T Consensus        26 ~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~~~--l~~  100 (410)
T TIGR00885        26 VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYTLF--LVG  100 (410)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHHHH--HHH
Confidence            34445555554   356677788999999999999999999999999888877776655332211   0111111  111


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-----------------------  445 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  445 (489)
                      .++.+.+.+.. .+....+..|+.|++.|++..++.+....++..+++.+...+...                       
T Consensus       101 ~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (410)
T TIGR00885       101 LFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH  179 (410)
T ss_pred             HHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence            12222222211 122334677888999999999999999999999988876655321                       


Q ss_pred             ---hCCchhHHHHHHHHHHHHHHH-HhhcccC
Q 011275          446 ---LGPQLLYSIFGTFCLMAVAFV-KRNVVET  473 (489)
Q Consensus       446 ---~g~~~~~~~~~~~~~~~~~~~-~~~~pet  473 (489)
                         .+++..|.+.+++.++..++. ....||.
T Consensus       180 ~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       180 SDLASVQTPYMIIGAVVLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence               246677877777666554433 2346663

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.2e-07  Score=93.93  Aligned_cols=171  Identities=15%  Similarity=0.170  Sum_probs=137.3

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcch--hhHHHHHhHHHHHHHHHH
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGASI  134 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G--Rr~~~~~~~~~~~i~~~l  134 (489)
                      .++..+...........+|...++.+.+.+  +.....+...+...+|-++.|+++|+..  ++.++.+++++.+++...
T Consensus       304 ~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~--~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~  381 (509)
T KOG2504|consen  304 ALSNLFAYLGFNVPFVYLPSYAKSLGLSSN--DAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF  381 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCChh--hhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence            333333333333455567888888776544  5578899999999999999999999988  667778888888888999


Q ss_pred             HHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011275          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~  214 (489)
                      +.+++++..+...-.+.|++.|.........+.|+.+.++-..+.++......++.+.|+++.+.+.+..+.|...|+.+
T Consensus       382 ~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~  461 (509)
T KOG2504|consen  382 LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC  461 (509)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence            99999999999999999999999988888899999999999999999999999999998888888777776678888876


Q ss_pred             HHHHHHHHHHhhccc
Q 011275          215 IVPAAILCLAMVFCA  229 (489)
Q Consensus       215 ~~~~~~~~~~~~~~p  229 (489)
                      .+..++..+.++..|
T Consensus       462 g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  462 GLCFLLSAVLLLILR  476 (509)
T ss_pred             ChHHHHHHHHHHHhH
Confidence            555555554544444

>PRK09848 glucuronide transporter; Provisional

Probab=98.60  E-value=4.8e-07  Score=91.39  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhhcccccccccchhcc
Q 011275           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ++......++..++.++.++++||+|+|+++..+.++..++.++..+.+  +++.+.+.-++.|+|.+...+......+|
T Consensus       267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~  346 (448)
T PRK09848        267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEAD  346 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3434444567788999999999999999999999988888777766643  56667777889999999988888888899


Q ss_pred             cCCcc-------cchhhhhHHHHHHHHHHHHHHHhh
Q 011275          169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       169 ~~p~~-------~Rg~~~~~~~~~~~~G~~~~~~~~  197 (489)
                      ..|.+       ++|...+.++....+|..+++.+.
T Consensus       347 ~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        347 TVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             hhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            88764       358888999888888876665554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.57  E-value=1.8e-06  Score=84.29  Aligned_cols=156  Identities=15%  Similarity=0.053  Sum_probs=92.2

Q ss_pred             HHHHHHhcCCCcchHHHHH--HHHHHHHHHHHHHHHhhc-----CCchhH-HHhhHHHHHHHHHHHHHhhccCCCchhhH
Q 011275          312 SSSVFKSAGLSSGLANVFV--GIANLLGSVVAMVLMDKL-----GRKALL-QWSFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~--~i~~~~g~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      .+.+.++.|.+........  .+...+ .++.|+++||+     |||+.+ ..+.+..+++...+...     .+....+
T Consensus        11 ~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~-----~~~~~l~   84 (356)
T TIGR00901        11 LPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL-----VPSTDLP   84 (356)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC-----CcchhHH
Confidence            3445566666544333332  233333 78999999998     888874 34444444433333211     1111111


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchhHHHH
Q 011275          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--------PQLLYSIF  455 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~  455 (489)
                      ......++.. .......+....+.+|.+|++.|+.+.++......++..+++.+...+....+        |...|.+.
T Consensus        85 ~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        85 LLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            1111111111 11222244556688999999999999999998888888888887777666666        77788777


Q ss_pred             HHHHHHHHHHHHhhcccCC
Q 011275          456 GTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       456 ~~~~~~~~~~~~~~~pet~  474 (489)
                      +++.++..+...+..||.+
T Consensus       164 ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHhccCCC
Confidence            7766665555444567753

>TIGR01272 gluP glucose/galactose transporter

Probab=98.55  E-value=8.6e-07  Score=84.57  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=97.5

Q ss_pred             ccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHH
Q 011275           71 NEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        71 ~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      +...+.+.+|   +|.+  +.+.++..+.+..++.+|.++.+++.||+|+|+++..+.++.+++.++....++... ..+
T Consensus       160 ~~w~~~yl~~~~~~g~s--~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~  236 (310)
T TIGR01272       160 GSFLVNFLSDPHALGLP--EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWF  236 (310)
T ss_pred             HHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence            3344555543   3554  445678899999999999999999999999999998888887777766655554332 234


Q ss_pred             HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      =++.|++.+..+|.......+..|++ .+...++..+ ..+|..+.|++.+.+.+..+ -+..|++
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~~-~~~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILCL-AIVGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHH-HHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence            55889999999999888888887765 4556666544 44666666665555655555 4666664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.50  E-value=2.2e-06  Score=87.17  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             HHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          313 SSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       313 ~~~~~~~~~~~--~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      +++....|-+.  .+......++..++.++.|+++|.+|||..++.+.++..++.+.....      +....  .+.+..
T Consensus        68 ~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------~~~~~--~iag~~  139 (599)
T PF06609_consen   68 PYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------QNMNT--FIAGMV  139 (599)
T ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------CcHHH--HHHHHH
Confidence            34555544432  356666778888899999999999999999888877777766554322      11222  223344


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 011275          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      +++++.  |...+....++|+.|.+.|..+.++.....-....+++.+...+....+|+|.|.+..+...+++
T Consensus       140 l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  140 LYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            443332  22234445689999999998887766543222222344443333334578888887777655544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.49  E-value=4.2e-07  Score=87.07  Aligned_cols=179  Identities=16%  Similarity=0.057  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHH------H-HHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHh
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE------G-LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC  124 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~-~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~  124 (489)
                      +++..++..|+......-.+.....+.+..++..++...      . +-.-+...++..|..+...+.|++|||+..+.+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G  384 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG  384 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence            345556555554433333444556677766664433221      0 111123445556788888999999999999999


Q ss_pred             HHHHHHHHHHHHhcchH----HHHHHH-HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011275          125 ALPMIIGASISATTRNL----IGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       125 ~~~~~i~~~l~~~~~~~----~~l~~~-R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  199 (489)
                      .+++++..+..+...|.    ..+++. -+.+=++.-+.-.....+.+|.+|.+.||..-++...+.-+|.+++...-.+
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence            99999999888887661    112222 2222233333444556678999999999999999988888888888877666


Q ss_pred             ccc-----CCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 011275          200 VKE-----IAGWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       200 ~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~pEs  231 (489)
                      +.+     ..+ -|+.|++.....++..+..+++|||
T Consensus       465 ~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  465 LTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             hhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence            665     333 5888888766666666777889998

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.7e-07  Score=86.79  Aligned_cols=148  Identities=16%  Similarity=0.107  Sum_probs=112.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCc
Q 011275          321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  400 (489)
Q Consensus       321 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (489)
                      ...|+.+...++.+++.+++.|.+.||+|+|..+++|+..+..+.+++.+..+..        +.+..-.+.+++.+...
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~--------~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP--------MLFVARSLQGVGSAFAD  177 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH--------HHHHHHHHhhhhHHHHH
Confidence            3467788888899999999999999999999999999998888887766543321        11112222333322221


Q ss_pred             cccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          401 GPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       401 ~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                       .....+.++.||.+. |++++|+...+..+|..++|.+.+.+++..|....|.+++.++++...+....++.+|..+
T Consensus       178 -tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  178 -TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence             123347889999877 7999999999999999999998889999999999999999999888776666666555444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.48  E-value=2.7e-06  Score=77.24  Aligned_cols=154  Identities=17%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc-------chHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------RNLI  142 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-------~~~~  142 (489)
                      ++..-|++.+.+|++.++.  ..+...-.+|..+| ++.|.+.|++|+|.++.++.+...+|..+...+       .+++
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            4445577888989876554  46677777787775 888999999999999999999888887665432       4677


Q ss_pred             HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011275          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~  221 (489)
                      .+.+.-++.|.+.+.....+.....+.||. .||.+.++.-....++. +...+......+ +. -+..+.++..+.++.
T Consensus        98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~-~~fll~la~~~~~v~  174 (250)
T PF06813_consen   98 LMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DP-SSFLLFLAVLPAVVC  174 (250)
T ss_pred             HHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-Ch-HHHHHHHHHHHHHHH
Confidence            788888888887666656666666788875 69999999887777764 333433333333 22 355555555666555


Q ss_pred             HHHhhccc
Q 011275          222 CLAMVFCA  229 (489)
Q Consensus       222 ~~~~~~~p  229 (489)
                      ++..+++.
T Consensus       175 l~~~~~vr  182 (250)
T PF06813_consen  175 LVAMFFVR  182 (250)
T ss_pred             HHHhhhee
Confidence            54444443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.47  E-value=9.6e-08  Score=91.67  Aligned_cols=158  Identities=11%  Similarity=0.059  Sum_probs=107.2

Q ss_pred             HhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHH
Q 011275          317 KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF  396 (489)
Q Consensus       317 ~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (489)
                      +......|+......+...+.+++.|++.||+.||.++..|..+-.++.++.....        ..|.....-.+.+++ 
T Consensus        64 ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~--------~Fwq~~l~R~~vGiG-  134 (493)
T KOG1330|consen   64 NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN--------HFWQVLLCRGFVGIG-  134 (493)
T ss_pred             CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccc-
Confidence            33334467888888899999999999999999999998887666666555443321        111111111111111 


Q ss_pred             hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          397 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       397 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      -.+..|+...+++|+||...|++..++.+.....|..++-.....+-+..+ |++.|...+++.++..+++..+++|..+
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            112457777899999999999999999998887776554433333333333 7888888888888888877777887776


Q ss_pred             CCHHHHHH
Q 011275          476 KSLQEIEI  483 (489)
Q Consensus       476 ~~~~e~~~  483 (489)
                      ...+|.++
T Consensus       215 ga~~~~~~  222 (493)
T KOG1330|consen  215 GARDEVDG  222 (493)
T ss_pred             cccccccc
Confidence            55555554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.44  E-value=1.1e-05  Score=80.91  Aligned_cols=162  Identities=13%  Similarity=0.037  Sum_probs=91.3

Q ss_pred             HHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHh----hcCCchhHHHh-hHHHHHHHHHHHHHhhcc---C---CC
Q 011275          313 SSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD----KLGRKALLQWS-FFSMAVSMAIQVAASSSY---I---PG  378 (489)
Q Consensus       313 ~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d----r~grr~~~~~~-~~~~~~~~~~~~~~~~~~---~---~~  378 (489)
                      +.+++..+.+..   .......+..++..++.|+++|    |+|||+..+.. .....++..++.......   .   ..
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            334566666644   4445556777788889999999    59999987664 333333333332221100   0   00


Q ss_pred             c---hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-----
Q 011275          379 S---ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR--AKAMAVCMSVHWVINFFVGLLFLRL--LEQL-----  446 (489)
Q Consensus       379 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----  446 (489)
                      .   ...+..+.++.+..+.......|. .++.+|+.|++.|  +.+.++.+....+|+.+++.+....  .+..     
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~  186 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT  186 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence            0   111222222222223333333344 4689999998865  5688887777777777776654332  1111     


Q ss_pred             --------CCchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          447 --------GPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       447 --------g~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                              +....|.+-+++.++...+.....||.+-
T Consensus       187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence                    22456666666666666667777888653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.43  E-value=1.7e-06  Score=85.23  Aligned_cols=162  Identities=21%  Similarity=0.251  Sum_probs=116.1

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcC-CCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           55 VATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        55 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ...+..++.+...+.++...+...+|.| .+.+  ..+...+...+.-++.-...+++..|+|-|+++.++.+.+++=..
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~--~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~  288 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGS--TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3344445555555555556666677776 4332  234555555556667778899999999999999999999998888


Q ss_pred             HHHhc-chHHHHHH----HHHHHhhhcccccccccchhcccCCcccchhhhhHHHH-HHHHHHHHHHHhhcccccCCch-
Q 011275          134 ISATT-RNLIGMLL----GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGW-  206 (489)
Q Consensus       134 l~~~~-~~~~~l~~----~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~-  206 (489)
                      +.+.. ++.+...+    .-.++|+..|........|+.+..|++.|++..+++.. ...+|..+|..+++.+.+..+- 
T Consensus       289 l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  289 LYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            88777 55444333    35679999999999999999999999999999999875 5678889999888887665442 


Q ss_pred             ----hHHHHHHHHHHH
Q 011275          207 ----WRICFWVSIVPA  218 (489)
Q Consensus       207 ----wr~~f~~~~~~~  218 (489)
                          |...+.+.+...
T Consensus       369 ~~~~~~~~~~v~a~~~  384 (400)
T PF03825_consen  369 GMFDWSAVFLVFAVMA  384 (400)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence                344554443333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.42  E-value=2e-05  Score=75.30  Aligned_cols=153  Identities=17%  Similarity=0.085  Sum_probs=95.5

Q ss_pred             HHHHHhcCCCcchHHHHH---HHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011275          313 SSVFKSAGLSSGLANVFV---GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~---~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.+..+++.+...+..   .+...+..+.-|.+.||+|.|+....+.+...+-++.........  + ...++ +.++
T Consensus        38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~--~-~~~ll-~~gl  113 (417)
T COG2223          38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP--S-TWQLL-VIGL  113 (417)
T ss_pred             hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC--c-hHHHH-HHHH
Confidence            334455666665444444   444555567799999999999988887777776666655543321  1 11222 2222


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHH---
Q 011275          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG---PQLLYSIFGTFCLMAV---  463 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~---  463 (489)
                      ++   +..-+...+...++++-||+|++|.+.|+.. .+|+|..+..++.+.+....+   +..+..++.+..++..   
T Consensus       114 l~---G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         114 LL---GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             HH---hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22   2222223344557899999999999999988 999999999988888877777   5544444444433332   


Q ss_pred             HHHHhhcccC
Q 011275          464 AFVKRNVVET  473 (489)
Q Consensus       464 ~~~~~~~pet  473 (489)
                      .+.....||.
T Consensus       190 ~~~~~d~p~~  199 (417)
T COG2223         190 WLGMNDVPEH  199 (417)
T ss_pred             HHHhCCChhh
Confidence            3333446663

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.42  E-value=2.8e-06  Score=87.53  Aligned_cols=136  Identities=18%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  402 (489)
                      .+......+|..+|+++.|.++||+|||+++..+.+...++.+......+      ...+    ..+-+..++ ..+...
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------~~~~----~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------YWMF----LIFRFLSGFFGSGPLT  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc------HHHH----HHHHHHHHhhccchhH
Confidence            34567778999999999999999999999998888877776655443321      1111    122222222 223345


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      +.+.+..|+++++.|+.+..+ ....+.++.+.+.....+..  +|++.+.+.........++ .+..||.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            677788999999999999999 77778888777776666655  5666666666555555443 4445576

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.41  E-value=1.3e-05  Score=79.77  Aligned_cols=157  Identities=18%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             hHHHHHHhcCCCcchHHHHHH-HHHHHHHHHHHHHHhhc-----CCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhhH
Q 011275          311 FSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKL-----GRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      -.|.++++.|.+.....+... ..-.+..++.|+++||+     |||+ .+..+....+++...+....     .....+
T Consensus        21 ~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~-----~~~~~~   95 (402)
T PRK11902         21 TLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP-----PHAALW   95 (402)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC-----ccchHH
Confidence            345666777776543222111 11257778999999999     8876 45555555555444433221     111111


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHH
Q 011275          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~  462 (489)
                      ......++.. .+.....|....+.+|.+|+++|+++.++......++..+++.+...+.+. .||...|.+.+++.++.
T Consensus        96 ~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~  174 (402)
T PRK11902         96 PLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAG  174 (402)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence            1111111111 223334456667899999999999999999988788888888776666664 48888888877776655


Q ss_pred             HHHHHhhcccCC
Q 011275          463 VAFVKRNVVETK  474 (489)
Q Consensus       463 ~~~~~~~~pet~  474 (489)
                      .+. ....||++
T Consensus       175 ~l~-~~~~~e~~  185 (402)
T PRK11902        175 ALT-TLWAPEPE  185 (402)
T ss_pred             HHH-HHhcCCCc
Confidence            443 34566664

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.39  E-value=4e-06  Score=84.10  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             HHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc
Q 011275           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~  138 (489)
                      ..++........+...+.+.++. ...++ ..+.......++..++.+++++++||+|||+++..+.++.+++.++..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~v-l~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYV-LGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHH-hcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            33444444444555555555543 33232 34667778888999999999999999999999999999999999988877


Q ss_pred             c--hHHHHHHHHHHHhhhcccccccccchhcccCCcc-------cchhhhhHHHHHHHHHHHHHHHh
Q 011275          139 R--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       139 ~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~-------~Rg~~~~~~~~~~~~G~~~~~~~  196 (489)
                      +  |.+.+++.-++.|++.|...+....+++|..+.+       +.|...+..+...-+|..++..+
T Consensus       311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            6  9999999999999999999999999999999743       34677777777777765555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.38  E-value=5.3e-06  Score=86.87  Aligned_cols=121  Identities=19%  Similarity=0.055  Sum_probs=82.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhc---cCC---------------------
Q 011275          322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---YIP---------------------  377 (489)
Q Consensus       322 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------  377 (489)
                      ..|+......++..++.++.+++.||.|||+.+.++.++++++.++.......   +..                     
T Consensus        69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~  148 (633)
T TIGR00805        69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMEN  148 (633)
T ss_pred             cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCC
Confidence            35666777889999999999999999999999988888888887766543200   000                     


Q ss_pred             -----------------C--chhhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHH
Q 011275          378 -----------------G--SASLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGL  437 (489)
Q Consensus       378 -----------------~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~  437 (489)
                                       .  .....+.+.+  -+..+.+. ...++...++.|.+|++.|+...++......++..+++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l  226 (633)
T TIGR00805       149 LTQALRPTQCPSECQKQHKESLMWLLFLVS--QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL  226 (633)
T ss_pred             CCCCccccccccccccccCCCceehhhHHH--HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence                             0  0011111111  11222221 223566779999999999999999999998888888877


Q ss_pred             HHHHHHH
Q 011275          438 LFLRLLE  444 (489)
Q Consensus       438 ~~~~~~~  444 (489)
                      +.+.+.+
T Consensus       227 lgg~l~~  233 (633)
T TIGR00805       227 LGSFCLQ  233 (633)
T ss_pred             HHHHHHh
Confidence            7665553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.36  E-value=3.8e-06  Score=85.41  Aligned_cols=107  Identities=8%  Similarity=0.047  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh-----cchHHHHHHHHHHHhhhcccccccccc
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      .++..+...++..++.+++++++||+|||+.+..+.++.+++.+....     ..+.+.+++.-++.|++.+...+...+
T Consensus       268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~a  347 (473)
T PRK10429        268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVI  347 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666788899999999999999999998888776666555432     345566667778889998888888888


Q ss_pred             hhcccCCc-------ccchhhhhHHHHHHHHHHHHHHHh
Q 011275          165 YVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       165 ~i~e~~p~-------~~Rg~~~~~~~~~~~~G~~~~~~~  196 (489)
                      +++|..+.       +..|...+......-+|..+++.+
T Consensus       348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999662       333457777777666665555444

>PRK09669 putative symporter YagG; Provisional

Probab=98.35  E-value=5.7e-06  Score=83.45  Aligned_cols=108  Identities=16%  Similarity=0.072  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHh--cchHHHHHHHHHHHhhhcccccccccchhcc
Q 011275           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~--~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      +.......+...++.+++++++||+|||+.+..+.++.+++.....+  ..+.+.+++.-++.|++.+...+.....++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566777788999999999999999998887766654433222  3567677888899999999999999999999


Q ss_pred             cCCcc-------cchhhhhHHHHHHHHHHHHHHHhhc
Q 011275          169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       169 ~~p~~-------~Rg~~~~~~~~~~~~G~~~~~~~~~  198 (489)
                      ..+.+       ..|...+..+....+|..+|+.+++
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88632       2355667777666777666655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.29  E-value=6e-05  Score=74.15  Aligned_cols=131  Identities=15%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             HhHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHH
Q 011275          310 YFSSSVFKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  385 (489)
Q Consensus       310 ~~~~~~~~~~~~~----~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                      +..+.+.++.|++    .+........+..+..+.+|++.||+|-|+++..+.+.-.+...+..+..+.        ...
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl--------~~L  118 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV--------WHM  118 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence            3344555555554    3456667778899999999999999999999888777666666555443211        111


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011275          386 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  451 (489)
                      ...-++++++-+.  ....+.++...+|++.|+++.|+..+...+|.++++.+... ....||...
T Consensus       119 ~i~R~llGvaEA~--~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y  181 (511)
T TIGR00806       119 QLMEVFYSVTMAA--RIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY  181 (511)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence            1112222222222  22455688899999999999999999999999999988766 556777543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=98.27  E-value=7.9e-06  Score=82.07  Aligned_cols=131  Identities=15%  Similarity=0.055  Sum_probs=94.0

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccc
Q 011275           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~  158 (489)
                      +.+|.+  +.+.++....+.++..+|.++.+++.||+|||+++..+.++.+++..+..+.++.. .+..=.+.|++.+..
T Consensus       288 ~~~g~s--~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i  364 (438)
T PRK10133        288 EIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQ  364 (438)
T ss_pred             hcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            345665  44568888999999999999999999999999999888877777666665655542 345567899999999


Q ss_pred             cccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011275          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       159 ~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~  214 (489)
                      +|.......|..|++ .+...++..+....|.+++++.| .+.+..+.-|..|++.
T Consensus       365 ~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G-~l~~~~g~~~~~~~v~  418 (438)
T PRK10133        365 YPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMG-FVSDAAGNIPTAELIP  418 (438)
T ss_pred             HHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHH-HHHHhccchHHHHHHH
Confidence            999999999987764 56777777654433344444444 4444443236666653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.7e-05  Score=77.94  Aligned_cols=92  Identities=16%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhhccc
Q 011275           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~  157 (489)
                      ++.++.++....+.......+..++.+++.++++|+|+|+++.++.++.+++..+.-+.+  +...+++..++.++|.+.
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI  343 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence            455666676666677777778888899999999999999999999999999998887765  778888899999999999


Q ss_pred             ccccccchhcccCC
Q 011275          158 GPTVAALYVTEVSP  171 (489)
Q Consensus       158 ~~~~~~~~i~e~~p  171 (489)
                      ..+...+.++|...
T Consensus       344 ~~~l~wam~~d~vD  357 (467)
T COG2211         344 ANPLPWAMVADTVD  357 (467)
T ss_pred             cccccHHHhcchhh
Confidence            99999999998875

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.17  E-value=4.3e-06  Score=81.22  Aligned_cols=132  Identities=15%  Similarity=0.091  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhccc
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .|...+...+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++|.+.+.+.+.+.|+-.+........|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777777777778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011275          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       170 ~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~  222 (489)
                      +|++..+....+ .+.+..+|..+....++.+.+..| .+..|++.+...+...
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~  393 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFT  393 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHH
Confidence            999887665555 356777777666666666666655 4666665444444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.13  E-value=3.8e-05  Score=69.21  Aligned_cols=134  Identities=21%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHH-HHHHHHhcchHHHHHHHHHHHhhh
Q 011275           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-GASISATTRNLIGMLLGRFVVGTG  154 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-~~~l~~~~~~~~~l~~~R~l~G~g  154 (489)
                      -+++.+|+|..+  .+.+.+....-.++.+++.|.++||+||+-..+.+..+..+ +.....++  ++.=..+-.+.|++
T Consensus       290 fF~~rfGlS~~~--a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  290 FFQKRFGLSAVS--AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHHhhCCChhh--ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhh
Confidence            367888887543  35566666566678889999999999999888766544333 33322222  22223445677777


Q ss_pred             cccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch--hHHHHHH
Q 011275          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWV  213 (489)
Q Consensus       155 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--wr~~f~~  213 (489)
                      .........-.++-+.|.++-|.+.++.+...++|..+-+++.+.+.+..+.  |--.|.+
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl  426 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL  426 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence            6665554555678888999999999999999999998888888887776653  4444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.10  E-value=0.0011  Score=69.46  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchhhHHHHHhHHHHHHHHHHHHhcch--------HHHHHHHH
Q 011275           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRN--------LIGMLLGR  148 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~~--------~~~l~~~R  148 (489)
                      .+.+|.+.+.  ...+...+..-.-+.++++|.++| ++||++.+.++.++..+|.++.+++..        ....+++-
T Consensus        15 ~~~lg~~~~~--A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL   92 (654)
T TIGR00926        15 LNFLGFSEST--STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL   92 (654)
T ss_pred             HHHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence            3345665433  334455555555577889999999 599999999999999999888776421        12355677


Q ss_pred             HHHhhhcccccccccchhcccCCccc---chhhhhHHHHHHHHHHHHHHHhhcccccC-------CchhHHHHHHHHHHH
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSIVPA  218 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-------~~~wr~~f~~~~~~~  218 (489)
                      .+..+|.|+.-+...+...|.+++++   |..+..++..+.++|.++++++...+.+.       .+ |...|.+..+..
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i~~i~m  171 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGVPAILM  171 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHHHHHH
Confidence            88888999999999999999998654   44566666777777877776665444321       23 677777654444


Q ss_pred             HHHH
Q 011275          219 AILC  222 (489)
Q Consensus       219 ~~~~  222 (489)
                      ++.+
T Consensus       172 ~ia~  175 (654)
T TIGR00926       172 ILAL  175 (654)
T ss_pred             HHHH
Confidence            4433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.00  E-value=2.4e-05  Score=57.45  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHH
Q 011275           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      .+++.+|.+.+|.++|.+  +.|++.+..++||.+|++...++.++..+++.+..+.+...+....+++.+++..+.
T Consensus        10 ayTplLP~M~~~~~ls~~--~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLS--QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHhHhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            467789999999988755  568999999999999999999999999999999999999999999999998877543

Note that many members are hypothetical proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.00  E-value=3.6e-05  Score=77.95  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=108.7

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc----------chHHHHHHHHH
Q 011275           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGRF  149 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----------~~~~~l~~~R~  149 (489)
                      ++|.+.+  +.|.......++..+|....+++.+|++.|+++.++.++.+++.......          ++.......-+
T Consensus       282 ~lG~s~~--~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       282 CLPGGPS--FSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cCCCCcc--hhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            4566544  55777777888999999999999999999999999999988877554311          33334556678


Q ss_pred             HHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc--------hhHHHHHHHHHHHHHH
Q 011275          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--------WWRICFWVSIVPAAIL  221 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--------~wr~~f~~~~~~~~~~  221 (489)
                      +++++.+........++.+.+|++.+|...++++...++|..+++.+++.+.+..|        -|..+.. ..++.++.
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i-~~~~~l~~  438 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG-HSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH-HHHHHHHH
Confidence            88998888888889999999999999999999999999998888887765543322        1333222 33444444


Q ss_pred             HHHhhcccC
Q 011275          222 CLAMVFCAE  230 (489)
Q Consensus       222 ~~~~~~~pE  230 (489)
                      +.+.+++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            444457775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.00  E-value=6.9e-05  Score=62.80  Aligned_cols=104  Identities=17%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCc
Q 011275           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP  172 (489)
Q Consensus        93 ~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~  172 (489)
                      ..++......+..++.+.+.+++|.|+.+.++.+++.+-... -+-++.+.++.+-.+.|++.+..+.....|+.+...+
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            455556667788899999999999999999999998864443 3567788899999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhh
Q 011275          173 FVRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       173 ~~Rg~~~~~~~~~~~~G~~~~~~~~  197 (489)
                      +.|++..+++-.....+.++|.+..
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887666666666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00033  Score=66.77  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=103.8

Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 011275          316 FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT  395 (489)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (489)
                      ++....++++.......+.+.+++..+++.+|+|.|+-++.++.++++++.+..-.....   ...    ......|..+
T Consensus        43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~---~y~----~FL~~lFila  115 (422)
T COG0738          43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK---SYG----FFLVALFILA  115 (422)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh---hHH----HHHHHHHHHH
Confidence            333344466777888899999999999999999999999999999888887765332211   111    1112223333


Q ss_pred             HhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hCCchhHHHH
Q 011275          396 FALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-------------------LGPQLLYSIF  455 (489)
Q Consensus       396 ~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~g~~~~~~~~  455 (489)
                      .+.+. -.....|+..+.|++..+.-+.+...++.+|+.++|.+...+..+                   ..+...|..+
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~  195 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL  195 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence            33321 122334788888988889999999999999999999887766542                   1245677777


Q ss_pred             HHHHHHHHHHH-HhhcccCCCCCHH
Q 011275          456 GTFCLMAVAFV-KRNVVETKGKSLQ  479 (489)
Q Consensus       456 ~~~~~~~~~~~-~~~~pet~~~~~~  479 (489)
                      +..+++..+.. ....||.+-.+.+
T Consensus       196 ~~~lvll~v~~~~~k~p~~~~~~~~  220 (422)
T COG0738         196 AGLLVLLAVLILLSKLPDLQVAAPS  220 (422)
T ss_pred             HHHHHHHHHHHHhccCCcCCccccc
Confidence            76665554433 3445666544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00025  Score=71.12  Aligned_cols=153  Identities=20%  Similarity=0.149  Sum_probs=100.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++.....+.|.+++.+.++++.||+|-|+++..+.++.++..++.=.....   +   .+..+..-++.+++.+. ..|
T Consensus        75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---~---~~~~~~~R~lqGl~~g~-~~p  147 (466)
T KOG2532|consen   75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---G---FYLLLVLRFLQGLGQGV-LFP  147 (466)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---c---chhhHHHHHHhHHHHhH-HHh
Confidence            3566777889999999999999999999999888776666555443221111   0   01111111222222221 235


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH-HHhh--cccC-CCCC
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAF-VKRN--VVET-KGKS  477 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~--~pet-~~~~  477 (489)
                      ....+.+.-.|++.|++..++..+...++.++.-.+.+.+-++ .||...|.+.|++.++..++ .++.  -|+. +..+
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is  227 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNIS  227 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence            6666788899999999999999998888777666566667676 89999999998887666432 2222  2443 4455


Q ss_pred             HHHHH
Q 011275          478 LQEIE  482 (489)
Q Consensus       478 ~~e~~  482 (489)
                      .+|.+
T Consensus       228 ~~El~  232 (466)
T KOG2532|consen  228 EKELK  232 (466)
T ss_pred             HHHHH
Confidence            56643

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.94  E-value=0.00034  Score=63.66  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=84.0

Q ss_pred             HHHHHhHHHHHHhcCCCcchHHH---HHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011275          306 NAIFYFSSSVFKSAGLSSGLANV---FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      +....|.+++.+..+.+....+.   ...++..+| ++.|.+.|++|.+.++.++.....++..++........+....+
T Consensus        19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            34456888888888887654333   334565554 78899999999999999998888888777665554433222211


Q ss_pred             HHHHHHHHHHHHHHhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          383 YLSVGGMLMFVLTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (489)
                      .+.   +..+..+.+... ....-....+.|| +.||++.|+.-+..-+.+.+...+...+..
T Consensus        98 ~~~---~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   98 LMC---LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHH---HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            111   111111111111 1111123458898 579999999999888888777776655443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.93  E-value=0.00026  Score=66.51  Aligned_cols=146  Identities=16%  Similarity=0.161  Sum_probs=107.3

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      +-.-+|.+..|-|+|..  +.|+..+...+.....++....+++| -.+|+.......++.+|.+...+.+.-..+.. -
T Consensus       227 ~~~WLP~ili~~G~sa~--~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~  303 (395)
T COG2807         227 VIGWLPAILIDRGLSAA--EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-A  303 (395)
T ss_pred             HHHHHHHHHHHcCCCHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-H
Confidence            33457999999998754  56899999999999999999999994 66788888888888777776666665444444 3


Q ss_pred             HHHhhhcccccccccchhcccCCcccc-hhhhhHHHHHHHHH---HHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011275          149 FVVGTGMGLGPTVAALYVTEVSPPFVR-GTYGAFIQIATCLG---LMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~p~~~R-g~~~~~~~~~~~~G---~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~  221 (489)
                      ++.|+|.|+.++.+...+.+-.++.++ ++.++   +.+.+|   ...||.+.+.+.|..|.|+...+......++.
T Consensus       304 ~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSg---maQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         304 LLLGLGQGGAFPLALTLILLRSSDAAIAAALSG---MAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHhCccchHHHHHHHHHHhhcCChHHHHHHHH---HhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999998888765443 44444   444555   34567777777777777888877644444433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.89  E-value=0.013  Score=57.99  Aligned_cols=117  Identities=23%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             HhcCCCcchH---HHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC--chhhHHHHHHHHH
Q 011275          317 KSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG--SASLYLSVGGMLM  391 (489)
Q Consensus       317 ~~~~~~~~~~---~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  391 (489)
                      ...|++....   -....+.++.|+++..++.+|+|..+.=.++.....++..+..........+  .......+.++..
T Consensus       286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~  365 (432)
T PF06963_consen  286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL  365 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence            4446665433   3344567788899999999999987765555444443332222111111111  1122222222222


Q ss_pred             HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH
Q 011275          392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  434 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  434 (489)
                      --++ -++......-+..|..|++.|++..|+-.+.+++.-.+
T Consensus       366 SR~G-LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  366 SRIG-LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHH-HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            1111 12223333447789999999999999999998876543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.87  E-value=9.9e-05  Score=65.96  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             HHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccc-hhcccCCcccchhhh
Q 011275          102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEVSPPFVRGTYG  179 (489)
Q Consensus       102 ~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~~Rg~~~  179 (489)
                      .+...+.|.|+||-|||+..+.-.+.+++++ +.-.+++|-.++++|.+.|++.+..+..--. ++.|.-  ++|+.-.
T Consensus        86 mLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~Feq  161 (454)
T KOG4332|consen   86 MLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQ  161 (454)
T ss_pred             HHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChH
Confidence            3555777899999999998776666555533 4457889999999999999998876654333 456654  4566433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.84  E-value=0.0002  Score=71.48  Aligned_cols=139  Identities=15%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011275          330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  409 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      .++..++.+..-|.++||+|||..+........+.........         .|+.+   +....+...........+.+
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~---~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFL---LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh---hcccccchhhhhhhhhhhee
Confidence            4567778888889999999999988777665555444433322         11110   00001111111223455899


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011275          410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e  480 (489)
                      +....+.|...+|+.+..-..+..++|..........+....+.+-.+..++..++....+||+..++.++
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            99999999999999999888888888888777777777777777777778888888888999998776554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.83  E-value=0.0001  Score=72.26  Aligned_cols=126  Identities=16%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011275          335 LLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  413 (489)
Q Consensus       335 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  413 (489)
                      -+..+++||++|| +|+|+.+..+.+++.++.+++....   .......++.   +.+ +....-..=|+.+....|+||
T Consensus        75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~---L~~-I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIG---LAL-IIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHH---HHH-HHhccccccccHHHHHHHhcC
Confidence            3566889999999 5999999999888888877765432   0111222222   111 122222234778888999997


Q ss_pred             chh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 011275          414 SRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       414 ~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ++.  |..+.++.....++|+++.|.+.+.+-+..|+...|...++-..++.+..+
T Consensus       148 ~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         148 KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            543  777777777788899999999888888888888888888887777765443

>PRK11462 putative transporter; Provisional

Probab=97.76  E-value=0.00049  Score=69.65  Aligned_cols=152  Identities=13%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             hcCCCcchHHH---HHHHHHHHHHHHHHHHHhh----cCCchhHH-HhhHHHHHHHHHHHHHhhccCCCch-hhHHHHHH
Q 011275          318 SAGLSSGLANV---FVGIANLLGSVVAMVLMDK----LGRKALLQ-WSFFSMAVSMAIQVAASSSYIPGSA-SLYLSVGG  388 (489)
Q Consensus       318 ~~~~~~~~~~~---~~~i~~~~g~~~~g~l~dr----~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  388 (489)
                      ..|.+...+..   ..-+...+.-++.|.++||    +|||+..+ ++.+.++++..++...+ . ..... ..++.+ .
T Consensus        39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~-~s~~~~~~y~~~-~  115 (460)
T PRK11462         39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-D-LSMNGKMIYAAI-T  115 (460)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-C-CCcchHHHHHHH-H
Confidence            35565554444   3445555677788999996    58876554 45555666554443222 1 11111 223322 2


Q ss_pred             HHHHHHHHhcCccccccccccccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CchhHHHHHHHHH
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFP-SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-------PQLLYSIFGTFCL  460 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~  460 (489)
                      .+++..++....-|- .++.+|+.+ ++.|++..++-...+.++..+++.+..++....|       +.....+++++.+
T Consensus       116 ~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        116 YTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            233344444433332 236677775 7889999999999888888888777666555443       2233344555554


Q ss_pred             HHHHHHHhhcccC
Q 011275          461 MAVAFVKRNVVET  473 (489)
Q Consensus       461 ~~~~~~~~~~pet  473 (489)
                      ++........+|.
T Consensus       195 i~~~i~~~~~kE~  207 (460)
T PRK11462        195 MMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHhcceec
Confidence            5544444445664

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.67  E-value=0.0015  Score=60.85  Aligned_cols=243  Identities=12%  Similarity=0.082  Sum_probs=139.8

Q ss_pred             HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhh
Q 011275          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG  179 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~  179 (489)
                      .+.++-++.=.+.|..--||+++.-.+...+...+.-+.++.+.+=+.-++.|...+... +.++|+-+..+++++.++.
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yqrvt  132 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEMYKRVT  132 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHHHHHHH
Confidence            344444566678999989999999888888888888899999999999999998766554 5678899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHH-HHHHHHhCCCch
Q 011275          180 AFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE-AEFEKLLGGSHV  257 (489)
Q Consensus       180 ~~~~~~~~~G~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~-~~l~~~~~~~~~  257 (489)
                      +.--.+...|...|...+-.+.+...+ ....-.++.....+..+...++|.-+|-++.+.++++.. .+.+........
T Consensus       133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~  212 (433)
T KOG3810|consen  133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASY  212 (433)
T ss_pred             HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchh
Confidence            998888888877777776554433211 233334443334444555667777665554443333211 111111000000


Q ss_pred             hHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-C----cchHHHHHHH
Q 011275          258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-S----SGLANVFVGI  332 (489)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~i  332 (489)
                      .+.+++...      .-...+.+..++++    ...+.+++....++++-..+|.+..-+...- +    .|..-....+
T Consensus       213 ~~~l~~~~~------~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl  282 (433)
T KOG3810|consen  213 MSYLRGAFV------LLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL  282 (433)
T ss_pred             hHHHHHHHH------HHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence            000000000      00001112222222    2223344444445556666676666555421 1    2333344555


Q ss_pred             HHHHHHHHHHHHHhhcCCchh
Q 011275          333 ANLLGSVVAMVLMDKLGRKAL  353 (489)
Q Consensus       333 ~~~~g~~~~g~l~dr~grr~~  353 (489)
                      .+.++.+..|.+.-++.|+.-
T Consensus       283 LGa~~~~~~g~l~i~w~r~g~  303 (433)
T KOG3810|consen  283 LGAIAALAAGYLNINWNRWGD  303 (433)
T ss_pred             HHHHHHHHHHheeeccchhhH
Confidence            666777888888666666543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.67  E-value=2.9e-05  Score=76.22  Aligned_cols=144  Identities=23%  Similarity=0.165  Sum_probs=112.2

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhccc
Q 011275           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~  157 (489)
                      .+|.+  ..+...|.....-..|-++.-++.+++.+|+|+-+++.+++.++.+=-+.....+|.|..+-.-+++|+..+.
T Consensus       398 led~~--~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~al  475 (618)
T KOG3762|consen  398 LEDLG--GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHAL  475 (618)
T ss_pred             HhhcC--CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHH
Confidence            34544  2333446555555667777778889999999999999999999988888888999999999999999999999


Q ss_pred             ccccccchhcccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          158 GPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      .+.....|+++..||+.|..+.++.+ ....+|--.|.++|+.+....+ -|..|...++..++.+++
T Consensus       476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988875 4445566677777777666555 377777665554444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.45  E-value=0.16  Score=51.06  Aligned_cols=111  Identities=6%  Similarity=-0.080  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHH-HHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc----ch------------------------
Q 011275           90 EGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPMIIGASISATT----RN------------------------  140 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig-~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----~~------------------------  140 (489)
                      ..++-+...+...+. .++.+++++|++|++++......+...-.+.++.    ++                        
T Consensus        45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~  124 (472)
T TIGR00769        45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA  124 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence            345555555555444 8889999999999999988877776665555443    11                        


Q ss_pred             ---HHHHHHHHHHHhhhcccccc-cccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          141 ---LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       141 ---~~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                         .|...+.-...-+-...... .-..+++|.++.+|-.|..++++++.++|.++++.+...+
T Consensus       125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111122222222233333 5667899999999999999999999999988777664443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.43  E-value=0.018  Score=56.00  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhh
Q 011275          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG  179 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~  179 (489)
                      -..+-.++..+..+|+.-+.=...+..+.+++.++.++++|.+.-+++-.+.+++.|.....--.+ +..+++.    ..
T Consensus        71 P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~~----~l  145 (402)
T PF02487_consen   71 PSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGKS----SL  145 (402)
T ss_pred             HHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCcc----cc
Confidence            444555667778887653333445566778888888999999988999999999988877665555 4455543    34


Q ss_pred             hHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHH-HHHHHHHHHHhhcccC
Q 011275          180 AFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVS-IVPAAILCLAMVFCAE  230 (489)
Q Consensus       180 ~~~~~~~~~G~~~~~~~~~~~~~~~~~-wr~~f~~~-~~~~~~~~~~~~~~pE  230 (489)
                      +.+..+...+.++|...-..+.+ .++ -|..+... .+|.+..+..++.+|+
T Consensus       146 ~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  146 SAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             ccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            55555555555555554333333 222 25455443 3443333333334443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.042  Score=52.29  Aligned_cols=143  Identities=12%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh-----cchhhHHHHHhH
Q 011275           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCA  125 (489)
Q Consensus        51 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~  125 (489)
                      ..+.++.+-..+.|...+... ++|.+.+.-|.|.++.  + +.+....-+ .--++|.|+.|     |+|||+..+.-.
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a-~fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--A-IFSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--h-hhhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            344455555566777777777 8898887666665432  1 223322222 23578999999     999999864322


Q ss_pred             -HHHHHHHHHHH-----------hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHH
Q 011275          126 -LPMIIGASISA-----------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS  193 (489)
Q Consensus       126 -~~~~i~~~l~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~  193 (489)
                       .+.+....+.+           -.++...+...-++.=+..+..-.+.-...-.+-.+++-|.++.-..++...|.+++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence             12122222211           122333332233333344444444455566667788889999999888888888777


Q ss_pred             HHhhc
Q 011275          194 LLIGI  198 (489)
Q Consensus       194 ~~~~~  198 (489)
                      ..+-.
T Consensus       186 ~~ifL  190 (510)
T KOG3574|consen  186 NVVFL  190 (510)
T ss_pred             cceee
Confidence            66543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.31  E-value=0.0041  Score=59.91  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=94.6

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchhhHHHHHhHHHHHHHHHH---HHhcchHHHHHHHHHHHhhh
Q 011275           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVVGTG  154 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~G~g  154 (489)
                      +-||++..+  .....+....|..+|-...|++.. |.++|+.-.+++....++-.+   ++...+.+.+...-++.|++
T Consensus       237 ~Vfgmsv~e--TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g  314 (403)
T PF03209_consen  237 EVFGMSVGE--TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG  314 (403)
T ss_pred             HHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            445676554  356778888888999999998777 788887777776666555443   45567788888999999999


Q ss_pred             cccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011275          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       155 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  199 (489)
                      .|.........+-|+.++++-|.+++.++..+.++..++.++|+.
T Consensus       315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~  359 (403)
T PF03209_consen  315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA  359 (403)
T ss_pred             hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888899999999999999999999999987777777654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.0025  Score=61.79  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             HHHHHhhhhhhh----cchhhHHHHHhHHH-HHHHHHHHHhcchHHHHH------------HHHHHHh-----hhccccc
Q 011275          102 FIGSTLSGWIAD----GVGRRRAFQLCALP-MIIGASISATTRNLIGML------------LGRFVVG-----TGMGLGP  159 (489)
Q Consensus       102 ~ig~~~~g~l~D----r~GRr~~~~~~~~~-~~i~~~l~~~~~~~~~l~------------~~R~l~G-----~g~g~~~  159 (489)
                      .+.+++.|..+|    ||||||.++.+... .+++.++.+.+.++..++            +.-++.|     ++.-...
T Consensus        81 ~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q  160 (498)
T KOG0637|consen   81 LLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ  160 (498)
T ss_pred             ceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence            467899999999    59998888766444 455666677766554432            2233333     4444566


Q ss_pred             ccccchhcccCCcccchh-hhhHHHHHHHHHHHHHHHhhc
Q 011275          160 TVAALYVTEVSPPFVRGT-YGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       160 ~~~~~~i~e~~p~~~Rg~-~~~~~~~~~~~G~~~~~~~~~  198 (489)
                      ..+-++.+|.+..+++.+ +++++.....+|..+|-.+|.
T Consensus       161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            678889999997766666 999999999999887777764

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.0023  Score=64.57  Aligned_cols=143  Identities=17%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      +.......++.+++.+.++.+.||++-.+.+....+.-++..++.....+      ...+  ++.-++.++.-+ +..|.
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s------~~~~--ialr~llGl~es-~~wP~  154 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS------FPGL--IALRFLLGLFES-GGWPG  154 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh------hHHH--HHHHHHHHHHhc-ccchH
Confidence            45667778899999999999999999555433322222221111111111      1111  111222233333 33466


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhHHHHHHHHHHHHHHHHhhcccCCC
Q 011275          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~  475 (489)
                      ...+++.-|.++.|+.-+|+-++...+++.+++.+...+..      ..||++.|++-|++.+...+++.+.+|+-.-
T Consensus       155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            66688999999999999999999999999998887655432      3578999999999999998888878776544

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.27  E-value=0.00073  Score=49.22  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=49.5

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHH
Q 011275           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~  128 (489)
                      ..+.+.|.+|...++.|++.  .+.|.+.+...+...++++++|.++||+||++..+....++
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~--~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSP--SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34556777888888878764  46689999999999999999999999999999987765543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.14  E-value=0.0059  Score=59.28  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      .+.+++..+..++-.+.+.|+.||+|-|.....+....+++..+=........++.....+...+-.+-......-.+ +
T Consensus        82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~-l  160 (480)
T KOG2563|consen   82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG-L  160 (480)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc-c
Confidence            467788888889999999999999999999988888887777654443332222222211222222222222111111 1


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  442 (489)
                      +.=...--||+++|+++..+..+.+.+|..++.. .+++
T Consensus       161 PskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l-lppi  198 (480)
T KOG2563|consen  161 PSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL-LPPI  198 (480)
T ss_pred             ccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh-ccce
Confidence            2223445589999999999999888887765554 3443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.00  E-value=0.025  Score=59.44  Aligned_cols=130  Identities=13%  Similarity=0.142  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011275          335 LLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  413 (489)
Q Consensus       335 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  413 (489)
                      -+..+++|+++|+ +||++.+.++.+...++..++...................++. .+....-+.-|...+...|.++
T Consensus        37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa-Lia~G~GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926        37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA-LIALGTGGIKPCVSAFGGDQFE  115 (654)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH-HHHhhccccccCchhhhHhhcC
Confidence            3555778899997 6999988888777777665554322111111111111111111 1112222233667777888886


Q ss_pred             ch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHHHH
Q 011275          414 SR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       414 ~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~  465 (489)
                      .+   .|.....+.....++|+.+++.+.+.+.+..       ++...|.+.+++.+++.+.
T Consensus       116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            43   4778888888889999988888777665333       3556777666666655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.94  E-value=0.0064  Score=60.28  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHH-HhHHHHHHHHHHHH
Q 011275           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISA  136 (489)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~-~~~~~~~i~~~l~~  136 (489)
                      +..+.++...+.+.+.++.+.+++|++.+  +.|.+..+--+-.+++.+++|+++||+-+|+.++ .+.+....++++..
T Consensus        18 ~f~~~~~~~~g~l~pll~vy~kQLGl~p~--~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   18 LFYLFFGARFGSLFPLLAVYFKQLGLNPA--VVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             eeeeeeeecccccchHHHHHHHHcCCCHH--HhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence            34455566677788889999999998765  4577777777777899999999999998766555 45555566666655


Q ss_pred             hc
Q 011275          137 TT  138 (489)
Q Consensus       137 ~~  138 (489)
                      +.
T Consensus        96 fv   97 (618)
T KOG3762|consen   96 FV   97 (618)
T ss_pred             ec
Confidence            43

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.71  E-value=0.21  Score=47.63  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             HHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011275          314 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      ..+++.++...   ..+........+...+.|.+.||+|||+.-+.-.+...++++..-      .+.....   +.+-+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~------~~~~~~L---~~GRv  129 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH------SSNYPVL---LLGRV  129 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh------ccccHHH---HHHHH
Confidence            34566777643   344444455666667778999999999976555555554443211      1111111   11111


Q ss_pred             HHHHHHhcCcc----ccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHH
Q 011275          391 MFVLTFALGAG----PVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQL--GPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       391 ~~~~~~~~~~~----~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~  463 (489)
                      +.++..++-..    =+....-..=+|.+..+...+..... +.+.+.+++.+...+.+..  |+..+|..-.++.+++.
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~  209 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA  209 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            11111110000    00011112235666666666655433 3334555555544455544  44677777666666666


Q ss_pred             HHHHhhcccCCCC
Q 011275          464 AFVKRNVVETKGK  476 (489)
Q Consensus       464 ~~~~~~~pet~~~  476 (489)
                      +++...=+|..|.
T Consensus       210 ~~I~~~W~ENyg~  222 (354)
T PF05631_consen  210 VLILKTWPENYGD  222 (354)
T ss_pred             HHHHhcccccCCC
Confidence            6665555676554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.69  E-value=0.043  Score=55.02  Aligned_cols=155  Identities=21%  Similarity=0.216  Sum_probs=84.9

Q ss_pred             HHhcCCCcchHHHHHHHHHH--HHHHHHHHHHhhcC----Cc-hhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          316 FKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLG----RK-ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~g----rr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+..+.+.........+..+  ...++.|.++|-+.    || +-+.++.++..++...+.......  ......  ...
T Consensus        17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~--~s~~~~--~~~   92 (433)
T PF03092_consen   17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE--SSAAIA--VVL   92 (433)
T ss_pred             HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc--chhhhH--HHH
Confidence            34566666555444444444  44578899999872    44 444455544433333333222111  111111  111


Q ss_pred             HHHHHHHHhcCccccccccccccC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIF---PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      +++...+..+. ..+.-....|..   |.+ |+.-++.+..+..+|+.++..+.+++.+..++...|.+.+.+..+..+.
T Consensus        93 l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   93 LFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            11111111111 112223444544   555 8888889988888888888888888888888888887777776666555


Q ss_pred             HHhhcccCCCC
Q 011275          466 VKRNVVETKGK  476 (489)
Q Consensus       466 ~~~~~pet~~~  476 (489)
                      .....+|.+.+
T Consensus       171 ~~~~~~e~~~~  181 (433)
T PF03092_consen  171 ALFLLEERKVR  181 (433)
T ss_pred             HHHhhhhcccc
Confidence            55566664433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.28  E-value=0.023  Score=55.35  Aligned_cols=107  Identities=20%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHH-----HHHHHHhcchHHHHHHHHHHHhhhcccccccccc
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-----GASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-----~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      .-+....|.+|-.++---...+  |+  |++.+.+.+-..-     ...+.-+.++.+.+++.-+..|+-.|..+.....
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3455555666644442221111  33  4454444333322     2222335688898889999999999999999999


Q ss_pred             hhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       165 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                      .+.|-.|+++|...++..+++..+|..++.+++.++
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.14  E-value=0.02  Score=56.23  Aligned_cols=105  Identities=11%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             HHHHHhHHHHHHHHHHHHhc---ch------HHHHHHHHHHHhhhcccccccccchhcccCCcc---cchhhhhHHHHHH
Q 011275          119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIAT  186 (489)
Q Consensus       119 ~~~~~~~~~~~i~~~l~~~~---~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~---~Rg~~~~~~~~~~  186 (489)
                      +++.++.+++.+|.++..++   .+      ...+.++-++.++|.|+.=+....+.+|.++++   +|..+..++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45677788888888873332   22      256888899999999999999999999999876   3556778889999


Q ss_pred             HHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011275          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       187 ~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~  224 (489)
                      ++|.+++......+.+..+ |.+.|.+..+..++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHH
Confidence            9999999888887777777 688888765544444333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.06  E-value=1.2  Score=45.16  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc---------ch----------------------HHHHHHHH
Q 011275          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RN----------------------LIGMLLGR  148 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~----------------------~~~l~~~R  148 (489)
                      ...+...+..+++++++|.+++......+...-.+.++.         ++                      .|...+.-
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            445666778999999999999988877776655554432         11                      01111111


Q ss_pred             HHHhhhcccccc-cccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011275          149 FVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       149 ~l~G~g~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  200 (489)
                      ++.-+-...... .-..+.+|.++.+|-.|..++++.+.++|.+++......+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111112222 3467889999999999999999999999977665554333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.99  E-value=0.1  Score=52.11  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      |++.....++..+++++.++...|.+. |++++.+.+.+.++.++.....  +.++. ..++...+-  +..+.+.+...
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~--~~~~~-~~y~mL~~R--~l~Gvg~~n~a  148 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALA--YVPNG-VKYLMLVAR--ILTGVGVGNFA  148 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHH--hcccc-hHHHHHHHH--HHcCcCcccHH
Confidence            566667889999999999999999985 6666778887887777653322  12222 233222222  22233334445


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhHHHHHHHHHHHHHHHHh
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--------------PQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ....|.++..-.+.|.++++......-++..++|.+ ...+..++              +..+-.+++++.++..+++..
T Consensus       149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~-q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI-QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH-HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            566788887777888888888776544555555543 22222221              122334556666666666665


Q ss_pred             hcccC
Q 011275          469 NVVET  473 (489)
Q Consensus       469 ~~pet  473 (489)
                      ..+|-
T Consensus       228 ~f~E~  232 (488)
T KOG2325|consen  228 FFKEV  232 (488)
T ss_pred             heeec
Confidence            55554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.90  E-value=0.92  Score=45.22  Aligned_cols=139  Identities=16%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             HHHHhhhhccceeeccchhhhhhh--cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh-----cchhhHHHHHhH----
Q 011275           57 TLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCA----  125 (489)
Q Consensus        57 ~l~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~----  125 (489)
                      .+-.++-|...+.....+|-+.++  -+.+-++.  + +.|....-+. --++|.|+.|     |+|||+..++-.    
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~-~fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--A-IFSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHh--e-eeeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            334466777777766777877776  34443332  2 1222111111 2356666666     899999875432    


Q ss_pred             --HHHHHHHHH----------HHh-------cchHH--HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHH
Q 011275          126 --LPMIIGASI----------SAT-------TRNLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI  184 (489)
Q Consensus       126 --~~~~i~~~l----------~~~-------~~~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~  184 (489)
                        .+..++.-.          -..       ..+..  .+...-++.=+-.+-.-.+.-...-.+..++.++.++.-..+
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence              222222211          000       00111  111111111111222223344555566678889999998888


Q ss_pred             HHHHHHHHHHHhhcc
Q 011275          185 ATCLGLMGSLLIGIP  199 (489)
Q Consensus       185 ~~~~G~~~~~~~~~~  199 (489)
                      +...|.+++..+...
T Consensus       162 G~~~Gyfls~tvFla  176 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLA  176 (544)
T ss_pred             HhhhhHHHHHHHHHh
Confidence            888888777666443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.83  E-value=2  Score=41.88  Aligned_cols=90  Identities=10%  Similarity=-0.036  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhh----cccccCCchhHHHHHHHH
Q 011275          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG----IPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~wr~~f~~~~  215 (489)
                      .|...++.-.+.+++.|..........++. |++.    +..+..+.+++..+..+..    ....+....--..|.++.
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y----tqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~  190 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY----TQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST  190 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH----HHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence            456666777888888888777777766655 4432    2222233333322222221    111121121234455554


Q ss_pred             HHHHHHHHHhhcccCChHH
Q 011275          216 VPAAILCLAMVFCAESPHW  234 (489)
Q Consensus       216 ~~~~~~~~~~~~~pEsp~~  234 (489)
                      +..++..+....+|..|-.
T Consensus       191 ~~~llC~i~y~~l~~lpf~  209 (406)
T KOG1479|consen  191 VILLLCFVLYLVLPKLPFV  209 (406)
T ss_pred             HHHHHHHHHHHHhhcchHH
Confidence            4444444444566777643

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.82  E-value=0.068  Score=38.87  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=35.7

Q ss_pred             HHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHh
Q 011275          309 FYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (489)
Q Consensus       309 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  357 (489)
                      .-|.+..+++.|++..   ......-+..+++.++.|+++||+++++.....
T Consensus        20 ~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   20 YPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            3345556677777754   455555678889999999999999999876443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.71  E-value=0.33  Score=50.20  Aligned_cols=144  Identities=17%  Similarity=0.256  Sum_probs=103.4

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchhhHHHHHhHHHHHHHHHHHHhcch--------
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRN--------  140 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~~--------  140 (489)
                      ..+.+..+..+++.+..  ...-..+.+........+..++++| .+||=+++.++.++..+|.++...+..        
T Consensus        57 ~~nlv~ylt~~~~~~~~--~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGG--GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             hhHHHHHHHHHhccchH--HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            45556667778777653  3345666776677788899999999 589999999999888887554332111        


Q ss_pred             -----------------HHHHHHHHHHHhhhcccccccccchhcccCC---ccc-ch--hhhhHHHHHHHHHHHHHHHhh
Q 011275          141 -----------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PFV-RG--TYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       141 -----------------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p---~~~-Rg--~~~~~~~~~~~~G~~~~~~~~  197 (489)
                                       ...+..+..+..+|.|+.-+....+-+|-++   +++ +.  ....++....++|.+++..+-
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                             1245667777888999988888899999998   322 23  678888899999988887776


Q ss_pred             cccccCCchhHHHHHHHHH
Q 011275          198 IPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       198 ~~~~~~~~~wr~~f~~~~~  216 (489)
                      ....+..+ |.+-|.+...
T Consensus       215 vyiq~~~~-w~lgf~i~~~  232 (571)
T KOG1237|consen  215 VYIQDNVG-WKLGFGIPTV  232 (571)
T ss_pred             Hhhhhccc-ceeeccHHHH
Confidence            66666666 6777766433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.47  E-value=3.2  Score=41.64  Aligned_cols=90  Identities=14%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc----cccCC-chh--HHHHH
Q 011275          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP----VKEIA-GWW--RICFW  212 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~----~~~~~-~~w--r~~f~  212 (489)
                      .+...++.-++.|++.|........+.+ .+|++    .+..+..+.+++.+++.++-..    ..+.. ..+  ...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4666677788899998888877777666 55653    4444445555544433333211    11100 112  23344


Q ss_pred             HHHHHHHHHHHHhhcccCChHH
Q 011275          213 VSIVPAAILCLAMVFCAESPHW  234 (489)
Q Consensus       213 ~~~~~~~~~~~~~~~~pEsp~~  234 (489)
                      ++.+..++.++....++.+|..
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~~  201 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPFA  201 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHH
Confidence            4545455555555567777654

>PRK03612 spermidine synthase; Provisional

Probab=95.33  E-value=0.31  Score=50.01  Aligned_cols=131  Identities=15%  Similarity=0.033  Sum_probs=67.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHH-HHH-HHHHHH----HhcchH-HHHHHHHHHHhhhcc
Q 011275           84 NGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMI-IGASIS----ATTRNL-IGMLLGRFVVGTGMG  156 (489)
Q Consensus        84 ~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~-i~~~l~----~~~~~~-~~l~~~R~l~G~g~g  156 (489)
                      ..+..+++.+.+.++.|.++|+.+.+++.++--|+....-..+ +.+ +...+.    +....+ ..+...-++.|+-.|
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG  125 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566889999999999999999988754433332211111 111 111111    111111 112334556677778


Q ss_pred             cccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcc-cccCCchhHHHHHHHH
Q 011275          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP-VKEIAGWWRICFWVSI  215 (489)
Q Consensus       157 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~wr~~f~~~~  215 (489)
                      +..|....+..+... ++-|+..+-......+|.++|.++..+ +....|-++..+.++.
T Consensus       126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            887776655544322 122344555555666666555555332 2333343555555443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.92  E-value=0.97  Score=41.07  Aligned_cols=51  Identities=10%  Similarity=0.027  Sum_probs=29.9

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhccc---cc-CCchhHHHHHHHHHHHHHHHH
Q 011275          173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE-IAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       173 ~~Rg~~~~~~~~~~~~G~~~~~~~~~~~---~~-~~~~wr~~f~~~~~~~~~~~~  223 (489)
                      ++|+..+.+-..+..+|.++..+.-...   .+ ....|++++.+.++..++-++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLI   56 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLI   56 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778888888888888866554442221   11 112289888775544444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.34  E-value=3.9  Score=40.76  Aligned_cols=138  Identities=13%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHH----HHHHHHHHHHhhccCC---CchhhHHHHHHHHHHHHH---
Q 011275          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM----AVSMAIQVAASSSYIP---GSASLYLSVGGMLMFVLT---  395 (489)
Q Consensus       326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---  395 (489)
                      ..+.-.+..++.+..-|...||..|.+......+..    ++++.++.........   ..............+...   
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L  122 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL  122 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            334455566666677788999999988766553332    2222222221111111   011121111212222221   


Q ss_pred             HhcCcc-ccccccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 011275          396 FALGAG-PVPSLLLPEIF--PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       396 ~~~~~~-~~~~~~~~e~~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      .+.+.. .+-.=++..+.  +++..+...+...-+--+...++|.+.+.+.+..+......+.++..+++.
T Consensus       123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence            111111 01111222233  345556666666666666888899988887776776655555555555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.90  E-value=1.6  Score=40.39  Aligned_cols=107  Identities=24%  Similarity=0.228  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc-Cccc
Q 011275          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL-GAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  402 (489)
                      +.......+....+.++.|.+.||+|||+....+.....++........     ........+. ...  .+... ...+
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~--~g~~~~~~~~  113 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP-----NVGLALLLIL-RLL--QGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHH-HHH--HHhhhHHHHH
Confidence            4555566677777779999999999999776665543222211111111     1011111111 111  11111 2345


Q ss_pred             cccccccccCCc-hhhhhHHHHHHH-HHHHHHHHHHHH
Q 011275          403 VPSLLLPEIFPS-RIRAKAMAVCMS-VHWVINFFVGLL  438 (489)
Q Consensus       403 ~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~  438 (489)
                      ....+..|.+|. +.|+...+.... ...++..+++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLL  151 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666788999987 678888888777 355555555543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=2.2  Score=42.63  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhhhhhh---cchhhHHHHHhHHHHHHHHHHHHhc------------------chHHHHHHHHHHHhhhccc
Q 011275           99 GGAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        99 ~g~~ig~~~~g~l~D---r~GRr~~~~~~~~~~~i~~~l~~~~------------------~~~~~l~~~R~l~G~g~g~  157 (489)
                      +|..++....+.+++   ++||++.+..+.++..++.++.-..                  +++...++.-++.|++-+.
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~  369 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC  369 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence            344455566667765   5899999999888887777776432                  2455667788999999998


Q ss_pred             ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHh
Q 011275          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  196 (489)
                      .......++.+.. +++|..+.+++-.-..++..++...
T Consensus       370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            8888888999999 6778888888877777776665544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.34  E-value=1.2  Score=44.49  Aligned_cols=107  Identities=11%  Similarity=0.039  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhh--HHHH--HhHHHHHHHHHHHHhc---------chHHHHHHHHHHHhhhccc
Q 011275           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQ--LCALPMIIGASISATT---------RNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~--~~~~~~~i~~~l~~~~---------~~~~~l~~~R~l~G~g~g~  157 (489)
                      -.....|.+|-.+|-.+..+.. .-++|  .++.  ++-+++.-.-++|..-         ++-+..++.-++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3566677788888877554321 11222  3332  2333444444455332         4555667778999999999


Q ss_pred             ccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011275          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       158 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~  198 (489)
                      ....+..+..+..+++||..+..+...+..+|...|..++.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888887754

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.27  E-value=6.1  Score=33.18  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccc
Q 011275          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ..........+.+++++.+.+++|.|..+.++.+...+-......      +..   +.....-.+.+++.+.-+ ....
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~---~~l~~~s~l~G~~~a~lW-~aqg  111 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNS---YTLYPASALLGFGAALLW-TAQG  111 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhH---HHHHHHHHHHhhhhHHhh-Hhhh
Confidence            344455667788888899999999999887776554433322211      111   111111122222222211 1223


Q ss_pred             ccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011275          406 LLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       406 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                      .++.+...++.|++-.++...+......+++.+
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            467788888889998888888777665555543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.77  E-value=14  Score=37.38  Aligned_cols=41  Identities=12%  Similarity=-0.119  Sum_probs=36.3

Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (489)
                      +.|.+.+|++..+...+-.++....++++..+++.+...+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999998765544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=90.52  E-value=1.3  Score=43.35  Aligned_cols=114  Identities=12%  Similarity=0.002  Sum_probs=66.9

Q ss_pred             hHHHhhHHHHHHHHHHHHHhhccCC-CchhhHHHHHHHHHHHHHHhcCccccccccccccCCch---hhhhHHHHHHHHH
Q 011275          353 LLQWSFFSMAVSMAIQVAASSSYIP-GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVH  428 (489)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~  428 (489)
                      .+.++.+...++.+++......... ..........++.+ ......+.=|+...+.+|.|+++   .|.+........-
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~l-ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLAL-IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHH-HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHH-HHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4556666666666664433322111 11111112222222 12222234467777888999765   4677777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 011275          429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ++|+.++....+.+.+..++...|.+.++..+++.+..+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            889988888777777788888888888877777765443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.33  E-value=21  Score=35.80  Aligned_cols=111  Identities=9%  Similarity=-0.047  Sum_probs=70.7

Q ss_pred             HHHHHHHHH-HHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc---------chH-------------------
Q 011275           91 GLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RNL-------------------  141 (489)
Q Consensus        91 ~~~~s~~~~-g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~~-------------------  141 (489)
                      .++=..+.+ ...+..++.+++.++.-|.+++......+...-+++++.         +++                   
T Consensus        64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il  143 (509)
T COG3202          64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL  143 (509)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence            444444544 566788899999999999999988888887777776653         110                   


Q ss_pred             ----HHHHHHHHHHhhhcccccc-cccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011275          142 ----IGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (489)
Q Consensus       142 ----~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~  201 (489)
                          |...+.-.+.=+=...... .-.....|.+..+|-.|..+++++..+++.+++..+..++.
T Consensus       144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~  208 (509)
T COG3202         144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS  208 (509)
T ss_pred             eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                1111111111111111111 23446789999999999999999999999776666555443

>PRK03612 spermidine synthase; Provisional

Probab=89.15  E-value=9.2  Score=39.35  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCchhHHHHHHHHHH
Q 011275          417 RAKAMAVCMSVHWVINFFVGLLFLRLL-EQLGPQLLYSIFGTFCLM  461 (489)
Q Consensus       417 r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  461 (489)
                      -+...|-...++.+|+.+++.+.+.++ ..+|......+.+.+.++
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~  188 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL  188 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            356677888888888888888766544 356655454455544433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=88.38  E-value=0.11  Score=49.37  Aligned_cols=106  Identities=18%  Similarity=0.202  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhc-chhhHHHHH--hHHHHHHHHHHHH----------hcchHHHHHHHHHHHhhhccccc
Q 011275           93 VVSMCLGGAFIGSTLSGWIADG-VGRRRAFQL--CALPMIIGASISA----------TTRNLIGMLLGRFVVGTGMGLGP  159 (489)
Q Consensus        93 ~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~--~~~~~~i~~~l~~----------~~~~~~~l~~~R~l~G~g~g~~~  159 (489)
                      ....|.+|-.+|-.+.++.--+ -.+|.++..  .-+++.-.-++|.          ..+|-+..++.=++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4556778888888877653211 134544433  2233322222331          23344556777889999999999


Q ss_pred             ccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011275          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       160 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~  198 (489)
                      .....+..+..++++|..+..+...+..+|...|..++.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             HHHH-----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988999888877754

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=87.79  E-value=0.13  Score=49.07  Aligned_cols=34  Identities=15%  Similarity=0.013  Sum_probs=1.8

Q ss_pred             ccccccccccCCchhhhhHHHHHHHHHHHHHHHH
Q 011275          402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV  435 (489)
Q Consensus       402 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  435 (489)
                      .+...+.++..+++.|-.+..+......+|-.++
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~G  300 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIG  300 (309)
T ss_dssp             HHHH------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567777877777777666555544444333

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=86.96  E-value=8.8  Score=37.59  Aligned_cols=106  Identities=16%  Similarity=0.073  Sum_probs=74.4

Q ss_pred             HHHHHH-HHHHHHHHHHhhhhhhhcchhhHHHHHhHH--HHHHHHHH------HHhcchHHHHHHHHHHHhhhccccccc
Q 011275           91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCAL--PMIIGASI------SATTRNLIGMLLGRFVVGTGMGLGPTV  161 (489)
Q Consensus        91 ~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~--~~~i~~~l------~~~~~~~~~l~~~R~l~G~g~g~~~~~  161 (489)
                      .+.... |.+.-.+|.+...++-++= ||.......+  ++.-.-.+      ...-.+-+++++.-.+.|+..|-....
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            345555 8888888876666665554 3433322211  11111111      123456677888899999999999999


Q ss_pred             ccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhh
Q 011275          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       162 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  197 (489)
                      ...+..+-.|++++-.+..+.......|...|.+++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999988888775

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=85.91  E-value=7.8  Score=28.65  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHH
Q 011275          312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  369 (489)
                      .|.+.++.+++.   ++......++.++|++...++.++..+++.+..+.+...+......
T Consensus        15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen   15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            455666666653   4667778899999999999988887777777776665555544433

Note that many members are hypothetical proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.14  E-value=4  Score=38.19  Aligned_cols=77  Identities=14%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011275          125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (489)
Q Consensus       125 ~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~  201 (489)
                      .+++.+...+..+.++++..++.-+..|+-+|..+....--+.+-.++++|-.+++....+-..|..++..++.++.
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            34455555666788999999999999999999998888777888788899999999999999999988888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-45

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 224/488 (45%), Gaps = 48/488 (9%)
Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 146 LG---------RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196
           L          R + G G+GL   ++ +Y+ E++P  +RG   +F Q A   G +    +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 197 G--IPVKEIAGW-----WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
              I     A W     WR  F    +PA +  + +    ESP WL  +G+  +AE    
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 250 KLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIF 309
           K++G +    ++ E+      D G       L++G    V+ IG  L   QQ  GIN + 
Sbjct: 242 KIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVL 297
Query: 310 YFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366
           Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M 
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 357
Query: 367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS 426
               A  +  PG  +L      ML +V  FA+  GPV  +LL EIFP+ IR KA+A+ ++
Sbjct: 358 SLGTAFYTQAPGIVALL----SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413
Query: 427 VHWVINFFVGXXXXXXXXXXXXXX------XYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
             W+ N+FV                      Y I+G   ++A  F+ + V ETKGK+L+E
Sbjct: 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473
Query: 481 IEIALLPQ 488
           +E    P+
Sbjct: 474 LEALWEPE 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 54/382 (14%), Positives = 103/382 (26%), Gaps = 24/382 (6%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205
           +G F++  G+G   T A  +VT + P           Q     G + +++ G  +     
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181

Query: 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS 265
             +    +  +    L         S    Y              L+    + +    L 
Sbjct: 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLTKFPALQ 235

Query: 266 KLDRGDDGDIVKFEE---LLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGL 321
             +  D            L   RH+R   +    +   Q       I Y    +      
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295

Query: 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 381
            +        +   +G      L+ +     +L            I     S++  G   
Sbjct: 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-----SAFAGGHVG 350

Query: 382 LYLSVGGML----MFVLTFALG 399
           L             +   F+LG
Sbjct: 351 LIALTLCSAFMSIQYPTIFSLG 372

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 53/391 (13%), Positives = 108/391 (27%), Gaps = 57/391 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRR--------AFQLCALPMIIGASISATTRNLI 142
           G++ +     + +   L G ++D +G R+           + A   I           L+
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202
           G ++G   +G     G      ++ +VS       +G           +G+ ++GI    
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE-FGRARMFGCVGWALGASIVGIMFTI 164

Query: 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
              +    FW+    A IL + + F                A      L           
Sbjct: 165 NNQFV---FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL--------- 212

Query: 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
                            EL        + +     +            F +S F +    
Sbjct: 213 ---------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

Query: 323 SGLANVFVGIANLLGSVVAMVLM-------DKLGRKALLQWSFFSMAVSMAIQVAASSSY 375
           + +     G    +G ++   +M       +++G K  L  +   M+V +       SS+
Sbjct: 258 TRV----FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-----SSF 308

Query: 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV 435
              +  + +      + +              +   F  R  A    VC      +    
Sbjct: 309 ATSALEVVIL---KTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364

Query: 436 GLLFL-RLLEQLGPQLLYSIFGTFCLMAVAF 465
             +    + E +G Q  Y + G   L     
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 41/321 (12%), Positives = 90/321 (28%), Gaps = 35/321 (10%)

Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
               + G ++D    R        L A  M+    +   T ++  M +  F+ G   G+G
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218
                  +        RG   +    A  +G     L+ +        W    ++    A
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196

Query: 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278
            ++ L               G     E + +     +          +         +  
Sbjct: 197 ILVALFAFAMMRDTPQ--SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ---------IFM 245

Query: 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGLS---SGLANVFV 330
           + +L  +    + I            +  + Y         + +    +   S  A    
Sbjct: 246 QYVLPNKLLWYIAIA--------NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297

Query: 331 GIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
             A + G+++   + DK+  G +      F ++     I    + +  P    + + V G
Sbjct: 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357

Query: 389 MLMFVLTFALGAGPVPSLLLP 409
            L++     +G       L P
Sbjct: 358 FLIYGPVMLIGL--HALELAP 376

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
                +       G+ L GW++D V  G R A  +  + ++  A+I        + T   
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
           +  +++G  + G  M +G     L+  E++P    GT   F  +   LG  +  S ++G 
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
            V    GW        +V      LA++        + +K R  +   E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.23
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.22
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.02
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.01
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.91
2xut_A	524	Proton/peptide symporter family protein; transport	98.88
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.87

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=8.6e-52  Score=420.88  Aligned_cols=434  Identities=30%  Similarity=0.496  Sum_probs=337.0

Q ss_pred             chHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCC------chhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHH
Q 011275           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (489)
Q Consensus        47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~  120 (489)
                      +..+...++++++.+++|||.++++.++|.+.++++.+.      ++.+.|++.+++.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            333445567788999999999999999999988875421      23446899999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHH------------------hcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHH
Q 011275          121 FQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI  182 (489)
Q Consensus       121 ~~~~~~~~~i~~~l~~------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~  182 (489)
                      +.++.+++.+++++++                  +++|++.++++|+++|+|.|+..+..+.+++|++|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999998                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccc-------CCchhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q 011275          183 QIATCLGLMGSLLIGIPVKE-------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (489)
Q Consensus       183 ~~~~~~G~~~~~~~~~~~~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~  255 (489)
                      +.+..+|.+.+...+.....       ...|||+.+....++.++..+..++.||||+|+..+++.+++++.+++..+++
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            99999998888877654322       12358999998888888888889999999999999999999999888765433


Q ss_pred             chhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHH
Q 011275          256 HVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGI  332 (489)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i  332 (489)
                      ...+...+.++....+ .+.......   ...+..........++++.+.+.+.+|.+..++..+.+..   ......++
T Consensus       248 ~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence            2222221111110000 000111111   2223344444555666777778888888888887776543   34566778


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC
Q 011275          333 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF  412 (489)
Q Consensus       333 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  412 (489)
                      ..++++++++++.||+|||+.+..+...+.+++..+.......  .  .....+...+++...+..+.+|+.+.+.+|++
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f  399 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF  399 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--c--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            8899999999999999999998888777776665544332221  1  12233344556667788888999999999999


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011275          413 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL  486 (489)
Q Consensus       413 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~~  486 (489)
                      |++.|++++|++..++++++++++.+.+.+.+      ..+....|.+++++++++.++.++++||||||++||+|+.|+
T Consensus       400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            99999999999999999999999887765532      345667888999999999999999999999999999999998


Q ss_pred             CC
Q 011275          487 PQ  488 (489)
Q Consensus       487 ~~  488 (489)
                      ++
T Consensus       480 ~~  481 (491)
T 4gc0_A          480 PE  481 (491)
T ss_dssp             --
T ss_pred             CC
Confidence            75

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=6e-33  Score=277.61  Aligned_cols=366  Identities=13%  Similarity=0.092  Sum_probs=262.9

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+++..+..+++.+..++.+|.+.+++|.+.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~  104 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNF--QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34455666677787777888899999999998755  5689999999999999999999999999999999999999999


Q ss_pred             HHHH---HhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-cCCch-
Q 011275          132 ASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGW-  206 (489)
Q Consensus       132 ~~l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~-  206 (489)
                      .+++   +.+++++.++++|+++|++.|...+....+++|++|+++|++..++++.+..+|..++++++..+. +..+. 
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  184 (438)
T 3o7q_A          105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ  184 (438)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999   889999999999999999999999999999999999999999999999999999999999988776 55554 


Q ss_pred             -----------------------hHHHHHHHHHHHHHHHHHhh--cccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 011275          207 -----------------------WRICFWVSIVPAAILCLAMV--FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL  261 (489)
Q Consensus       207 -----------------------wr~~f~~~~~~~~~~~~~~~--~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  261 (489)
                                             ||+.|++.....++..+..+  ..||+++.    .+.                    
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~--------------------  240 (438)
T 3o7q_A          185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHS--------------------  240 (438)
T ss_dssp             CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CCC--------------------
T ss_pred             cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----ccc--------------------
Confidence                                   89999765544444433332  24565320    000                    


Q ss_pred             HHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HHhc-CCCc---chHHHHHHHHHHH
Q 011275          262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSA-GLSS---GLANVFVGIANLL  336 (489)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~~~  336 (489)
                            ++++.....++++.++++.++......++.....    .....+.+.+ .++. +.+.   +.......++..+
T Consensus       241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  310 (438)
T 3o7q_A          241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI  310 (438)
T ss_dssp             ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence                  0011112234556677677666555444333222    2222333444 4443 5553   4556667788899


Q ss_pred             HHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh
Q 011275          337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI  416 (489)
Q Consensus       337 g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  416 (489)
                      +.++.++++||+|||+.+..+.+...++..+.....      .. . . +....+...+.+ ...|....+..|.+|++ 
T Consensus       311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~-~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-  379 (438)
T 3o7q_A          311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GH-V-G-LIALTLCSAFMS-IQYPTIFSLGIKNLGQD-  379 (438)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HH-H-H-HHHHHHHHHHHT-THHHHHHHHHHSSCGGG-
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------Cc-H-H-HHHHHHHHHHHH-HHHHHHHHHHHhhcccc-
Confidence            999999999999999988777666555544332211      11 1 1 111122222222 23456677778999977 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHH
Q 011275          417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       417 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~  465 (489)
                      |+++.++.. .+++++.++|.+.+.+.+..| +...|.+.+++.++..++
T Consensus       380 ~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            889988877 778999999999999999988 888877666555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.1e-34  Score=287.95  Aligned_cols=391  Identities=12%  Similarity=0.065  Sum_probs=268.8

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHH
Q 011275           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        51 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ......+++.+..+++....++.+|.+.+++ .+.+  +.+++.+.+.+++.++++++|+++||+|||+++..+.+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHh--HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            3455666777777888888888999999998 6654  568999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----cchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch
Q 011275          131 GASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (489)
Q Consensus       131 ~~~l~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  206 (489)
                      +.+++++    ++|++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..++++++..+.+..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  184 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  184 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999    999999999999999999999999999999999999999999999999999999998888765444442


Q ss_pred             hHHHHHHHHHHHHHH-HHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011275          207 WRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (489)
Q Consensus       207 wr~~f~~~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+.|++.++..++. ++..+++||+|+....+++.+. +         +..++..++  +.+++...+....++.++++
T Consensus       185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  252 (451)
T 1pw4_A          185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-K---------NDYPDDYNE--KAEQELTAKQIFMQYVLPNK  252 (451)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-C---------CC---------------CCTHHHHHHTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-c---------ccccccchh--hhhcccccccchHHHHHcCH
Confidence            699988876555544 3445678898764211111000 0         000000000  00001111111134555555


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHhhH
Q 011275          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF  359 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~  359 (489)
                      .++......++...    .......+.+.++++ .+.+.   +.......++.+++.++.+++.||+  |||+.+..+..
T Consensus       253 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          253 LLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM  328 (451)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            55544433333222    122333444444444 45553   3556677788999999999999999  99988766554


Q ss_pred             HHH-HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHH
Q 011275          360 SMA-VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGL  437 (489)
Q Consensus       360 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~  437 (489)
                      ... ++..+..     ..+.. ..+......++.+.+.. +..+....+..|.+|++.|+++.|+.+.+.++ ++.+++.
T Consensus       329 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          329 TLVTIATIVYW-----MNPAG-NPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHHHHTT-----SCCTT-CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----Hhccc-CHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            443 2222211     11111 11222222222222211 22344456889999999999999999999999 9999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 011275          438 LFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       438 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +.+.+.+..|+...|.+.+++++++.+...
T Consensus       402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          402 IVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888888877776655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=1.8e-29  Score=256.27  Aligned_cols=390  Identities=15%  Similarity=0.116  Sum_probs=231.5

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhccccc
Q 011275           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP  159 (489)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~  159 (489)
                      +|.+  ..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|...
T Consensus        49 ~~~s--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHIT--RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            7765  4466899999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             ccccchhcccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhc-ccCCh----
Q 011275          160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAESP----  232 (489)
Q Consensus       160 ~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~pEsp----  232 (489)
                      +....+++|++|+++  |+...++++.+..+|..+++.++..+.+..+ ||+.|++.++..++..+...+ .++..    
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY  205 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence            999999999999999  6778888899999999999998887766666 799998865554444333322 12110    


Q ss_pred             HHHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhccCCCCcchhHHHhhhccc-
Q 011275          233 HWLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRH-  286 (489)
Q Consensus       233 ~~l~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-  286 (489)
                      +....+.+.++.++..++                ..+....++....         .....+.......  ....+++. 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  283 (491)
T 4aps_A          206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKV--TSTEHLRVV  283 (491)
T ss_dssp             SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT
T ss_pred             cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccc--cHHHHHHHH
Confidence            000001122222222222                0000000000000         0000000000000  00011111 


Q ss_pred             -hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHH-----HhhHH
Q 011275          287 -FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFS  360 (489)
Q Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~  360 (489)
                       .........++...........+.|..+.++......+.......++.+++.++.+++.||+|||+...     .+...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence             111222222222221111222222222222222234566677778888889999999999999986543     44444


Q ss_pred             HHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 011275          361 MAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF  439 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  439 (489)
                      .+++............ ......+..+...++...+.. ...|....+..|.+|++.|++++|+.+...++++.+++.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333322211100 011111222222223333222 23566677899999999999999999999999999998876


Q ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011275          440 LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       440 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~  477 (489)
                      +.+. ..+....|.+++++++++.+..+...|+++++.
T Consensus       443 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          443 TLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             GGGG-GSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443 445667777888887777777666777777653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=6.3e-30  Score=250.39  Aligned_cols=357  Identities=13%  Similarity=0.106  Sum_probs=242.2

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH
Q 011275           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ..+++..++.+++.+...+.+|.+.+++|.+.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREG--AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTH--HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            345666677777888888899999999887654  568999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011275          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~  213 (489)
                      +.++++|++.+++.|+++|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999887766555 7999987


Q ss_pred             HHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011275          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      ..+..++..+ ..++.||+++.   ++++                              +....++++.++++.++....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~  206 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV---DAPR------------------------------TRLLTSYKTLFGNSGFNCYLL  206 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT---TCCC------------------------------CCTTTCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcccCCC---Cccc------------------------------ccHHHHHHHHhcCcchHHHHH
Confidence            6665555444 44567887531   0000                              001112344555555554443


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHH-HHHHHHHHHHH
Q 011275          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAA  371 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~  371 (489)
                      ...+............+.+..+.++......+.......++.+++.++.+++.||++++..  .+... ...+.......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~  284 (375)
T 2gfp_A          207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPD  284 (375)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence            3333222211111112222223233222233555666778888888888888998877322  22211 11111110100


Q ss_pred             hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011275          372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  451 (489)
                      ...    ....+......++..++... ..|....+..|.+| +.|+++.|+.+...+++..+++.+.+.+.+..++...
T Consensus       285 ~~~----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  358 (375)
T 2gfp_A          285 WFG----VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG  358 (375)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred             hhc----cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence            000    00112222222333333332 34666678899998 8999999999999999999988887777665554444


Q ss_pred             HHH
Q 011275          452 YSI  454 (489)
Q Consensus       452 ~~~  454 (489)
                      +.+
T Consensus       359 ~~~  361 (375)
T 2gfp_A          359 LLM  361 (375)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=6e-27  Score=232.61  Aligned_cols=374  Identities=16%  Similarity=0.074  Sum_probs=213.2

Q ss_pred             eeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHH---HHHhcchHH-
Q 011275           68 GVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNLI-  142 (489)
Q Consensus        68 ~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~---l~~~~~~~~-  142 (489)
                      +...+.+|.. .+++|.+..  +.|++.+.+.+++.++++++|+++||+|||+++..+..+++++..   ..+.+.... 
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKS--DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTT--TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566664 456787654  458999999999999999999999999999999988877655321   112222211 


Q ss_pred             HHHHHHHHHhhhcccccccccchhcccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011275          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      .+..+|.+.|++.|...+.....+.++.++  ++|+...+.......+|..+++.++..+.+. + ||+.|++..++.++
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWLGSGCALI  179 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHHHHHHH
Confidence            234566777766555444444444455443  3455555665555566766667666555432 3 79999876555544


Q ss_pred             HHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011275          221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      ..+..++.+|+|+.   +.+.++          ..           .++.++.....+++.++++.++............
T Consensus       180 ~~~~~~~~~~~~~~---~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          180 LAVLLFFAKTDAPS---SATVAN----------AV-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             HHHHSCSSCCCCSC---SSCSSS----------SS-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccccc---cccccc----------cc-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence            44444444443210   000000          00           0000111112344556655554433322221111


Q ss_pred             hhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011275          301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (489)
                      ........+.|....++..+.   ..+.......++..++.++.++++||+|||+++..+....++......     .. 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-----~~-  309 (417)
T 2cfq_A          236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FA-  309 (417)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-----TC-
T ss_pred             HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-----Hh-
Confidence            111111112222211110000   113344455677888999999999999999988766655544332221     11 


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 011275          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG  456 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  456 (489)
                      ..... + +...++....+. ...+..+.+.+|.+|++.|+++.++. +..+++++.++|.+.+.+.+..|+...|.+++
T Consensus       310 ~~~~~-~-~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          310 TSALE-V-VILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             CSHHH-H-HHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             ccHHH-H-HHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            11111 1 111111111111 11123356899999999999999995 77788999999998888888777777788888


Q ss_pred             HHHHHHHHHHHhhcccCCCCCH
Q 011275          457 TFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       457 ~~~~~~~~~~~~~~pet~~~~~  478 (489)
                      ++++++.+......||+|..++
T Consensus       387 ~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHHHHHHhhhcCCCchHH
Confidence            8888887776677888777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.92  E-value=6.3e-25  Score=224.71  Aligned_cols=151  Identities=17%  Similarity=0.173  Sum_probs=128.2

Q ss_pred             cchh-hhhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhhHHHHHhHHHHHHHHHHHHhcc-hHH
Q 011275           72 EPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI  142 (489)
Q Consensus        72 ~~~~-~i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~  142 (489)
                      +.++ .+.+++|      .+.+  +.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.++.++++ +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGA--VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTT--THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHhccccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            3444 3456777      6544  568999999999999999999999999 999999999999999999999999 999


Q ss_pred             HHHHHHHHHhhhcccccccccchhcccCCcccchhhhhH---HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011275          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~  219 (489)
                      .+++.|++.|++.|...+....++.|++|+++|++..+.   +..+..+|..+++.++..+.+..+ ||+.|++..+..+
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~  189 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887776   888889999999998887766556 7999988766555


Q ss_pred             HHHHHh
Q 011275          220 ILCLAM  225 (489)
Q Consensus       220 ~~~~~~  225 (489)
                      +..+..
T Consensus       190 ~~~~~~  195 (524)
T 2xut_A          190 VATVFF  195 (524)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.23  E-value=1.2e-11  Score=124.79  Aligned_cols=158  Identities=18%  Similarity=0.106  Sum_probs=98.4

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhc-----chHHHH
Q 011275           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~~~~l  144 (489)
                      +....+.+.++.+.+...  .........+...++.++.+++.||+|||+.++.+.....++.+..+..     .+...+
T Consensus       296 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  373 (491)
T 4gc0_A          296 VLYYAPEVFKTLGASTDI--ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  373 (491)
T ss_dssp             HHHHHHHHHHHSSCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhcchHHHHhcCCCccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence            344456677776654332  2344455566778899999999999999999998888877766655432     222222


Q ss_pred             H-HHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC------CchhHHHHHHHHHH
Q 011275          145 L-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------AGWWRICFWVSIVP  217 (489)
Q Consensus       145 ~-~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~------~~~wr~~f~~~~~~  217 (489)
                      . ..-+..+++.+ ..++...+.+|.+|.+.|+...++......+|..+++.....+.+.      .+ +.+.|++.+..
T Consensus       374 ~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~  451 (491)
T 4gc0_A          374 LSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM  451 (491)
T ss_dssp             HHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence            2 22222333332 3345678899999999999999998888888766665543222111      11 23445543333


Q ss_pred             HHH-HHHHhhcccCC
Q 011275          218 AAI-LCLAMVFCAES  231 (489)
Q Consensus       218 ~~~-~~~~~~~~pEs  231 (489)
                      .++ .++.++++|||
T Consensus       452 ~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          452 GVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHheecCC
Confidence            333 34456789999

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.22  E-value=9.2e-11  Score=116.83  Aligned_cols=155  Identities=18%  Similarity=0.178  Sum_probs=122.5

Q ss_pred             eeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcc--hhhHHHHHhHHHHH-HHHHHHHhc--chH
Q 011275           68 GVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI-IGASISATT--RNL  141 (489)
Q Consensus        68 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~--GRr~~~~~~~~~~~-i~~~l~~~~--~~~  141 (489)
                      ..+....|.+.++ +|.+  +.+.++..+...++..++.++.|+++||+  |||+.+..+..+.. ++.++..+.  .+.
T Consensus       269 ~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (451)
T 1pw4_A          269 YGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP  346 (451)
T ss_dssp             HHHHHHHHHHBTTBSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred             HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence            3345566767666 6765  34567888889999999999999999999  99999988877766 666665555  367


Q ss_pred             HHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHH-HHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011275          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       142 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~  220 (489)
                      +.+.+.-++.|++.+...+....++.|.+|+++||++.++++....+ |..+++.+.+.+.+..+ |+..|++..+..++
T Consensus       347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~  425 (451)
T 1pw4_A          347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSIL  425 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence            77788889999998888888888999999999999999999999999 99888888877766666 68888776555544


Q ss_pred             HHHHh
Q 011275          221 LCLAM  225 (489)
Q Consensus       221 ~~~~~  225 (489)
                      ..+..
T Consensus       426 ~~~~~  430 (451)
T 1pw4_A          426 AVILL  430 (451)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.02  E-value=5.4e-10  Score=110.83  Aligned_cols=143  Identities=14%  Similarity=0.020  Sum_probs=110.3

Q ss_pred             eccchhhh-hhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHH
Q 011275           70 VNEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        70 ~~~~~~~i-~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      +....|.+ .++. |.+  +.+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++...+...
T Consensus       277 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (438)
T 3o7q_A          277 CWSYLIRYAVEEIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL  354 (438)
T ss_dssp             HHHHHHHHHHHHSTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            34455655 5554 655  4456788888899999999999999999999999999999999998888888888765555


Q ss_pred             HHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011275          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~  217 (489)
                       ++.|++.+...+....+..|.+|++ |+...++.. ...+|..+++.+.+.+.+..+.++..|++..+.
T Consensus       355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence             8889999988888888989999977 888888776 445777777777666665544346666654333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.01  E-value=3.3e-10  Score=111.83  Aligned_cols=142  Identities=13%  Similarity=-0.008  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhccc
Q 011275           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .++..+...++..++.++.|+++||+|||+++..+.++.+++..+.++.++.+.+++..++.+++.+...+....+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666777778889999999999999999999988888888877778888888888888888887766666667899999


Q ss_pred             CCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q 011275          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAESP  232 (489)
Q Consensus       170 ~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~pEsp  232 (489)
                      +|++.||...++ ++....+|..++|.+++.+.+..+ ++..|++..+..++..+. ....||.+
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999998888 477788888888888777665555 577777655544444333 34455543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.91  E-value=8.9e-09  Score=103.70  Aligned_cols=139  Identities=12%  Similarity=0.180  Sum_probs=96.2

Q ss_pred             cCCCc---chHHHHHHHHHHHHHHHHHHHHhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011275          319 AGLSS---GLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  394 (489)
Q Consensus       319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (489)
                      .+.+.   ++......++..++.++.|+++|| +|||+++..+.+...++..+....     .+ .....  ...++.++
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~--~~~~l~g~  120 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FG-ASALF--GSIILIII  120 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CS-TTHHH--HHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hh-HHHHH--HHHHHHHH
Confidence            45543   456667778899999999999999 899999988877766665544321     11 11111  11222222


Q ss_pred             HHhcCccccccccccccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          395 TFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       395 ~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      +.+ ...|....+.+|.+|++.  |+++.++.+....++..++|.+...+.+..++.+.|.+.++..+++.+..
T Consensus       121 ~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          121 GTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            221 123556678999999988  77788888889999999999988888888898888888776665555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.88  E-value=2.1e-08  Score=101.83  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=93.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  401 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (489)
                      .++......++..++.+++|+++||+ |||+++..+.+...++..+.....     ...  +......++.+++.+ ...
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~l~g~~~~-~~~  127 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----HSV--QGFYTGLFLIALGSG-GIK  127 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----SCH--HHHHHHHHHHHHHHH-TTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----ccH--HHHHHHHHHHHHhcc-ccc
Confidence            34566777788899999999999999 999998887776666555443221     011  111112222222222 234


Q ss_pred             ccccccccccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 011275          402 PVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       402 ~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      |....+.+|.+|++.|++..+.   .....+++..+++.+...+.+..++.+.|.+.+++.++..+..
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            5666789999999999876666   8888888888888887777777888888887777766655544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.87  E-value=2.9e-09  Score=103.32  Aligned_cols=156  Identities=12%  Similarity=0.059  Sum_probs=108.7

Q ss_pred             HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011275          312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++.........        .+.....
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~   94 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--------LTVLIAA   94 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHH
Confidence            344555566554   35566677888899999999999999999998887777776655543321        1111111


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 011275          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .++.+.+.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++...|.+.+++.++..+....
T Consensus        95 ~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A           95 SAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221 1234556688999999999999999999999999999988777666667777888777777776665556


Q ss_pred             hcccCCCC
Q 011275          469 NVVETKGK  476 (489)
Q Consensus       469 ~~pet~~~  476 (489)
                      .+||++.+
T Consensus       174 ~~~~~~~~  181 (375)
T 2gfp_A          174 WMPETRPV  181 (375)
T ss_dssp             SSCCCSTT
T ss_pred             HCcccCCC
Confidence            78887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-16
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-10

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 55/448 (12%), Positives = 131/448 (29%), Gaps = 22/448 (4%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
           G+G       +        RG   +    A  +G     L+ +        W    ++  
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
             A ++ L                   E + ++         +   A+            
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ----------- 239

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335
           +  + +L  +    + I +    L +   ++    +   V   A   S  A      A +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 395
            G+++   + DK+ R         +    M +   A+  Y    A         ++ +  
Sbjct: 300 PGTLLCGWMSDKVFRGNRG----ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG-LLFLRLLEQLGPQLLYSI 454
              G   +  L   E+ P +    A        ++        +    ++  G    + +
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415

Query: 455 FGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                ++AV  +   ++  K +  Q ++
Sbjct: 416 MIGGSILAVILLIVVMIGEKRRHEQLLQ 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 51/421 (12%), Positives = 106/421 (25%), Gaps = 36/421 (8%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
           ++D +G R+        M++  +              +L+G  V G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
                   R +   F +      +  +L   I         +  FW+    A IL + + 
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286
           F                A      L                            EL     
Sbjct: 186 FAKTDAPSSATVANAVGANHSAFSL------------------------KLALELFRQPK 221

Query: 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346
              + +     +            F +S F +    + +      +       +    + 
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE-----LLNASIM 276

Query: 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL 406
                 + +    +  +     ++        + S    V    + +             
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK- 335

Query: 407 LLPEIFPSRIRAKAMAVCMSVHWVINFFVG-LLFLRLLEQLGPQLLYSIFGTFCLMAVAF 465
            +   F  R  A    VC      +      +L   + E +G Q  Y + G   L     
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 466 V 466
            
Sbjct: 396 S 396

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.2
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.98

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-34  Score=287.13  Aligned_cols=410  Identities=12%  Similarity=0.060  Sum_probs=256.0

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...+.++.+....+...++...|.+. |+|++.+  +.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~  103 (447)
T d1pw4a_          27 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  103 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            33344444444445455666777665 5788765  56899999999999999999999999999999999999999999


Q ss_pred             HHHHhc----chHHHHHHHHHHHhhhcccccccccchhcccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011275          133 SISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       133 ~l~~~~----~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr  208 (489)
                      ++++++    .+++.+++.|++.|++.|...+....+++|++|+++|+++.++++.+..+|..++++++.......++||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~  183 (447)
T d1pw4a_         104 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH  183 (447)
T ss_dssp             HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred             hhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccc
Confidence            998876    4778899999999999999999999999999999999999999999999998888877665544444589


Q ss_pred             HHHHHHHHHHHHHH-HHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011275          209 ICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       209 ~~f~~~~~~~~~~~-~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      +.|++..+..++.. +...+.+|+|+..... +.++.++         +..+.  ..++.+++...+....+..++++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
T d1pw4a_         184 AALYMPAFCAILVALFAFAMMRDTPQSCGLP-PIEEYKN---------DYPDD--YNEKAEQELTAKQIFMQYVLPNKLL  251 (447)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC-SCTTTCC---------C---------------CCTHHHHHHTSSCHHH
T ss_pred             ccchhhhhhHHHHHHHHHHhcccchhhcccc-hhhhhhh---------hcccc--hhhccccccchhhHHHHHHHcCchH
Confidence            88887655554443 4445566665431111 1111000         00000  0000111111222233444444444


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHH
Q 011275          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  363 (489)
                      +......++....    .+....+.+..+. ..+.+.   +.......++..++.++++++.||++||+..........+
T Consensus       252 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         252 WYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHH
Confidence            4333322222111    1222233333333 234442   3456667788899999999999999987654443333332


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 011275          364 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~  442 (489)
                      ..........   ......+..+...+..++ ...+..+....+..|.+|++.|+++.|+.+.++++++ .+++.+.+.+
T Consensus       328 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         328 VTIATIVYWM---NPAGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             HHHHHHHTTS---CCTTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---cccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221111   111112222222222221 1222345566788999999999999999999988865 4567777888


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011275          443 LEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL  486 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~~  486 (489)
                      .+..|+...+.+++++++++.++.....++.++| .+|+.++.+
T Consensus       404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~e~~  446 (447)
T d1pw4a_         404 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR-HEQLLQELV  446 (447)
T ss_dssp             HHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGGGSC
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHhCC
Confidence            8888988888777777777666555444444433 344444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.3e-25  Score=214.98  Aligned_cols=388  Identities=13%  Similarity=0.008  Sum_probs=235.2

Q ss_pred             HHHHHHHHhhhhccceeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHH
Q 011275           53 VLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ...+.+..++..+..+...+.+|.. .+++|.+.  .+.|++.+.+.+++.++++++|+++||+|||++++.+..+..++
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~--~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISK--SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            3344555555556666677777764 55678764  46799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHH----HHHHHHhhhcccccccccchhcccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011275          132 ASISATTRNLIGML----LGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       132 ~~l~~~~~~~~~l~----~~R~l~G~g~g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  205 (489)
                      ..+.....+.....    +.+.+.+.+.+...........+..++  +++.+..+........+..+++.++..+.+. +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~  165 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N  165 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-c
Confidence            88888877766543    455555555555544444444433333  2344555666667777777777776655443 3


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011275          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (489)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+..+.......+...+..+..+|+|+.   +.+.++ ++                     +..+........+..+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~---------------------~~~~~~~~~~~~~~~~~~  220 (417)
T d1pv7a_         166 NQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANA-VG---------------------ANHSAFSLKLALELFRQP  220 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSCSS---SCSSHH-HH---------------------SCCCCCCHHHHHHHTTSS
T ss_pred             ccccccchhhHHHHHHHHHHHHhcccccc---hhhhhh-hh---------------------hhcccccccccccccccc
Confidence            34444444445555555556667776531   111111 00                     011111111222222223


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-------cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhh
Q 011275          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-------SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF  358 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  358 (489)
                      ..+.................    .............       .+.......++..++..+.+++.||.++|+.+..+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  296 (417)
T d1pv7a_         221 KLWFLSLYVIGVSCTYDVFD----QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG  296 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHhhh----ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhH
Confidence            33222222111111111101    1111111111111       123345556778888899999999999999887776


Q ss_pred             HHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH-HHHHHHHHHHH
Q 011275          359 FSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS-VHWVINFFVGL  437 (489)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~~~~~~~~  437 (489)
                      ...+++......     .++..   ..+...++.+++.+. ..+....+..|.+|++.|+++.++... ...++..++|.
T Consensus       297 ~~~~~~~~~~~~-----~~~~~---~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  367 (417)
T d1pv7a_         297 TIMSVRIIGSSF-----ATSAL---EVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV  367 (417)
T ss_dssp             HHHHHHHHHHHT-----CCCHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHhhhcccc-----ccccc---hhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555443321     11111   111222222222222 234556688999999999999998765 45678889999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 011275          438 LFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI  481 (489)
Q Consensus       438 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~  481 (489)
                      +.+.+.+..|+...|.++++++++..++..+.+++++..++++.
T Consensus       368 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~  411 (417)
T d1pv7a_         368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR  411 (417)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence            99999999999889999998888887777778888888877443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.4e-11  Score=118.06  Aligned_cols=136  Identities=13%  Similarity=-0.009  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccccccchhcc
Q 011275           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ..+...+...++..++..+.+++.||+|||+++..+.++.+++.++..+.++.+.+.+.-++.|++.+...+....++.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  339 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011275          169 VSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       169 ~~p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~  225 (489)
                      .+|+++||+..+.. +....+|..+++.+.+.+.+..| ++..|++..+..++..++.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~  396 (417)
T d1pv7a_         340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999874 56777888888888777766666 5888877555554444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=3.7e-09  Score=102.38  Aligned_cols=146  Identities=14%  Similarity=0.058  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011275          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++......++..++.++.|+++||+|||+++..+.++.+++..+........  ......+  ...++.+.+.+. ..+
T Consensus        61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~g~~~~~-~~~  135 (447)
T d1pw4a_          61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMF--VLLFLCGWFQGM-GWP  135 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHH--HHHHHHHHHHHH-THH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--hhHHHHH--HHHHHHHHhhhh-hhh
Confidence            45667778889999999999999999999999888777776665544322111  1111111  111122222221 234


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhcccC
Q 011275          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pet  473 (489)
                      ....+.+|.+|++.|++++++.+....++..+++.+........ ++.+.+.+.+.++++..++....++|+
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            45568899999999999999999999998888887766655543 567777777777766666555555544