Citrus Sinensis ID: 011282

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAESGDHLRDEYDSDSYGEDIAETETDESSGFDTEDEYGDDFIDDDDNEEFYSSVPNSGVVIEEIEDDKPMNGNDQPKRLKKKDVSSESERQIVVKNATGVPELESEDEDGFPISTSHKSKVTSREAQVMADEENGEKTSEDSEKKKASSDQDTGKKRKVKSTGQDEQQERKKKKKKKQKEKGEDEQVYKGITDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGDNLSEKKKRKRKKKKAQENEGNTRTDQTISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
ccEEcEEEccccccccccccccccEEEEEEEEccccccccEEEEEEEcccccEEEEEEcccccccccccEEEccccEEEEEEEcccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccHHHHHHHHHcccccccccccEEEEEEEEccccccccccccEEEEEEEEEEcccccEEccccccccEEEEcccccccccHHHHHcccccccEEEEEEccccccccccccccccccccEEEEEEEEEEc
ccEEEEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEEEccccccccccEEEEEcccEEEEEEEcccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEccccccEccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHEHccccccHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccEEEEEEcccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEEH
mgfwgievkpgkahpyhsdnvpgklHVTQAtlglgssteksilqcsvgdrspiflcsllpnknescplklefdeddvvvfsvkgpqsihlagyfeaesgdhlrdeydsdsygediaetetdessgfdtedeygddfiddddneefyssvpnsgvvieeieddkpmngndqpkrlkkkdvssesERQIVVKNatgvpelesededgfpistshkskvtsreAQVMadeengektsedsekkkassdqdtgkkrkvkstgQDEQQERKKKKKKKqkekgedeqvykgitddetnavldgenkhdlksqnvnqmdldnkaddapgdnlseKKKRKRKKKKAqenegntrtdqTISAVKekkepasatEQVQSEakssqvrtfpnglVIEEVamgkpdgkraspgkqvSVRYIGKLkkngkifdsnvgrapfkfrlgvgevikgwdvgvngmrvgdkrrltippsmgygaegaggkippnswlvfdVELIDVR
mgfwgievkpgkahpyhsdnvpGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLagyfeaesgdHLRDEYDSDSYGEDIaetetdessgfdtEDEYGDDFIDDDDNEEFYSSVPNSGVVIeeieddkpmngndqpkrlkkkdvsseserqivvknatgvpelesededgfpistshkskvtsreaqvmadeengektsedsekkkassdqdtgkkrkvkstgqdeqqerkkkkkkkqkekgedeqvykgitddetnavldgenkhdlksqnvnqmdldnkaddapgdnlsekkkrkrkkkkaqenegntrtdqtisavkekkepasateqvqseakssqvrtfpnGLVIEEVAmgkpdgkraspgkqvsvRYIGKlkkngkifdsnvgrapFKFRLgvgevikgwdvgvngmrvgdkrrltIPPSMGYGaegaggkippnswLVFDVELIDVR
MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLefdeddvvvfSVKGPQSIHLAGYFEAESGDHLRDEYDSDSYGEDIAETETDESSGFdtedeygddfiddddneeFYSSVPNSGVVIEEIEDDKPMNGNDQPKRLKKKDVSSESERQIVVKNATGVPELESEDEDGFPISTSHKSKVTSREAQVMADEENGektsedsekkkassdqdTGKKRKVKSTgqdeqqerkkkkkkkqkekgedeqVYKGITDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGDNLSEkkkrkrkkkkAQENEGNTRTDQTISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
***WGI*****************KLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFE*********************************************************************************************************************************************************************************************************************************************************************************************************************SVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELI***
MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAES*******************************************************************************************************************************************************************************************************************************************************************************************GLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAESGDHLRDEYDSDSYGEDIAETETDESSGFDTEDEYGDDFIDDDDNEEFYSSVPNSGVVIEEIEDDKPMNGND****************QIVVKNATGVPELESEDEDGFPIS***********************************************************************QVYKGITDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGD*****************************************************RTFPNGLVIEEVAMGK**********QVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
*GFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAES**********************************GDDFIDDDDNEEFYSSVPNSGVVIEEIEDD*******************************G********************************************************************************************TDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGDNLSEKKKRKRKKKKAQENEGNTRTDQTISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
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MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLPNKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAESGDHLRDEYDSDSYGEDIAETETDESSGFDTEDEYGDDFIDDDDNEEFYSSVPNSGVVIEEIEDDKPMNGNDQPKRLKKKDVSSESERQIVVKNATGVPELESEDEDGFPISTSHKSKVTSREAQVMADEENGEKTSEDSEKKKASSDQDTGKKRKVKSTGQxxxxxxxxxxxxxxxxxxxxxQVYKGITDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPxxxxxxxxxxxxxxxxxxxxxGNTRTDQTISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
Q93ZG9477 Peptidyl-prolyl cis-trans yes no 0.942 0.966 0.506 1e-111
Q9FLB3143 Peptidyl-prolyl cis-trans no no 0.271 0.930 0.613 3e-39
F4J9Q6499 Peptidyl-prolyl cis-trans no no 0.241 0.236 0.525 4e-32
Q54NB6364 FK506-binding protein 4 O yes no 0.261 0.351 0.486 2e-28
P54397357 39 kDa FK506-binding nucl yes no 0.247 0.338 0.552 1e-27
P0C1J6382 FK506-binding protein 4 O N/A no 0.226 0.290 0.517 5e-27
P0C1B0479 FK506-binding protein 4 O yes no 0.464 0.473 0.353 2e-26
Q4PIN7375 FK506-binding protein 4 O N/A no 0.296 0.386 0.451 2e-26
Q7SCN0467 FK506-binding protein 4 O N/A no 0.249 0.261 0.488 6e-26
O74191361 FK506-binding protein 39 yes no 0.341 0.462 0.430 9e-26
>sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53 OS=Arabidopsis thaliana GN=FKBP53 PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 256/505 (50%), Positives = 340/505 (67%), Gaps = 44/505 (8%)

Query: 1   MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLP 60
           MGFWG+EVKPGK   Y+  N  GK+HVTQATLG G S EKS++QCS+GD++PI LCSLLP
Sbjct: 1   MGFWGLEVKPGKPQAYNPKNEQGKIHVTQATLGTGLSKEKSVIQCSIGDKAPIALCSLLP 60

Query: 61  NKNESCPLKLEFDEDDVVV-FSVKGPQSIHLAGYFEA-ESGDHLRDEYDSDSYGEDIAET 118
           NK E CPL LEFD+DD  V F+V G +SIHL+G+ E  +  +   +  + DS G D+ E+
Sbjct: 61  NKIECCPLNLEFDDDDEPVEFTVTGDRSIHLSGFLEYYQDDEDDYEHDEDDSDGIDVGES 120

Query: 119 ETDESSGFDTE-DEYGDDFID-DDDNEEFY--SSVPNSGVVIEEIEDDKPMNGNDQPKRL 174
           E D+S  +D+E DE  D+F D  D N E Y  ++ P SGV+IEEIED++    +++ K+ 
Sbjct: 121 EEDDSCEYDSEEDEQLDEFEDFLDSNLERYRNAAAPKSGVIIEEIEDEEKPAKDNKAKQT 180

Query: 175 KKKDVSSESE---RQIVVKNATGVPELESEDED--GFPISTSHKSKVTSREAQVMADEEN 229
           KKK  +SE E   +QIV      VP LESEDED  G PI     S+V         +  +
Sbjct: 181 KKKSQASEGENAKKQIVAIEGAHVPVLESEDEDEDGLPIPKGKSSEV---------ENAS 231

Query: 230 GEKTSEDSEKKKASSDQDTGKKRKVKSTGQDEQQERKKKKKKKQKEKGEDEQVYKGITDD 289
           GEK   D++      +Q + KKRK K+  QD+ QE   K KKK+ +K  +++  + + ++
Sbjct: 232 GEKMVVDND------EQGSNKKRKAKAAEQDDGQESANKSKKKKNQK--EKKKGENVLNE 283

Query: 290 ETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGDN-LSEKKKR--KRKKKKAQENEGNTR 346
           E   V  G   + LK Q+++Q+  + KA D   +N +SE  K   K  +KK +  +    
Sbjct: 284 EAGQVQTG---NVLKKQDISQISSNTKAQDGTANNAMSESSKTPDKSAEKKTKNKKKKKP 340

Query: 347 TDQT--ISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQV 404
           +D+   IS   EK+ PA        ++KSSQVRT+PNGL++EE++MGKP+GKRA PGK V
Sbjct: 341 SDEAAEISGTVEKQTPA--------DSKSSQVRTYPNGLIVEELSMGKPNGKRADPGKTV 392

Query: 405 SVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGY 464
           SVRYIGKL+KNGKIFDSN+G++PFKFRLG+G VIKGWDVGVNGMRVGDKR+LTIPPSMGY
Sbjct: 393 SVRYIGKLQKNGKIFDSNIGKSPFKFRLGIGSVIKGWDVGVNGMRVGDKRKLTIPPSMGY 452

Query: 465 GAEGAGGKIPPNSWLVFDVELIDVR 489
           G +GAGG+IPPNSWL FDVELI+V+
Sbjct: 453 GVKGAGGQIPPNSWLTFDVELINVQ 477
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Histone chaperone possibly involved in H3/H4 deposition to the nucleosome. Associates with 18S rDNA chromatin and negatively regulates the level of its expression.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q9FLB3|FK153_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-3 OS=Arabidopsis thaliana GN=FKBP15-3 PE=2 SV=1 Back     alignment and function description
>sp|F4J9Q6|FKB43_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana GN=FKBP43 PE=2 SV=1 Back     alignment and function description
>sp|Q54NB6|FKBP4_DICDI FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1 Back     alignment and function description
>sp|P54397|FKB39_DROME 39 kDa FK506-binding nuclear protein OS=Drosophila melanogaster GN=FK506-bp1 PE=1 SV=2 Back     alignment and function description
>sp|P0C1J6|FKBP4_RHIO9 FK506-binding protein 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP4 PE=3 SV=1 Back     alignment and function description
>sp|P0C1B0|FKBP4_EMENI FK506-binding protein 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fpr4 PE=3 SV=2 Back     alignment and function description
>sp|Q4PIN7|FKBP4_USTMA FK506-binding protein 4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FPR4 PE=3 SV=1 Back     alignment and function description
>sp|Q7SCN0|FKBP4_NEUCR FK506-binding protein 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fpr-4 PE=3 SV=1 Back     alignment and function description
>sp|O74191|FKBP4_SCHPO FK506-binding protein 39 kDa OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fkbp39 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
255539695490 FK506-binding protein, putative [Ricinus 0.973 0.971 0.600 1e-131
356538942503 PREDICTED: uncharacterized protein LOC10 0.979 0.952 0.568 1e-124
449499693471 PREDICTED: peptidyl-prolyl cis-trans iso 0.942 0.978 0.557 1e-123
356497385503 PREDICTED: uncharacterized protein LOC10 0.979 0.952 0.558 1e-123
449460790507 PREDICTED: peptidyl-prolyl cis-trans iso 0.991 0.956 0.547 1e-123
225455553525 PREDICTED: uncharacterized protein LOC10 0.991 0.923 0.543 1e-116
357481299502 FK506-binding protein [Medicago truncatu 0.983 0.958 0.539 1e-115
217074790502 unknown [Medicago truncatula] gi|3885195 0.983 0.958 0.537 1e-114
18416534477 peptidylprolyl isomerase [Arabidopsis th 0.942 0.966 0.506 1e-109
5123924487 putative protein [Arabidopsis thaliana] 0.942 0.946 0.497 1e-107
>gi|255539695|ref|XP_002510912.1| FK506-binding protein, putative [Ricinus communis] gi|223550027|gb|EEF51514.1| FK506-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 302/503 (60%), Positives = 370/503 (73%), Gaps = 27/503 (5%)

Query: 1   MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLP 60
           MGFWGIEVKPGK HP+HSDNV G+L+VTQATLGLG STE+++LQCSVG ++P+FLCSLLP
Sbjct: 1   MGFWGIEVKPGKPHPFHSDNVEGRLYVTQATLGLGPSTERTVLQCSVGHKNPVFLCSLLP 60

Query: 61  NKNESCPLKLEFDEDDVVVFSVKGPQSIHLAGYFEAESGDHLRDEYDSDSYGEDIAETET 120
           ++ ESC L LEF +D++V FSV GP+SIHL+GYF ++ GDHLRD    D  GEDIAETET
Sbjct: 61  DRIESCSLNLEF-KDELVAFSVIGPRSIHLSGYFVSDEGDHLRD----DDSGEDIAETET 115

Query: 121 DESSGFDTEDEYGDDFIDDDDNE-EFYSS--VPNSGVVIEEIEDD-KPMNGNDQPKRLKK 176
           +ESS  D +DEY DDFIDDDD++ E +S   VPNSGVVIEEI DD KP   N+QPK+ KK
Sbjct: 116 EESSECDYDDEYDDDFIDDDDDDLEMFSPSPVPNSGVVIEEIVDDEKP---NNQPKQSKK 172

Query: 177 KDVSSE---SERQIVVKNATGVPELESEDEDGFPISTSHKSKVTSREAQVMADEENGEKT 233
           K    +   S RQ++V+    V  LESEDEDGFPI  S KSK    E ++  D +  ++T
Sbjct: 173 KSNQEDQKNSHRQMLVRRGADVSVLESEDEDGFPIVASQKSKAGVEEPEL--DIQKDKRT 230

Query: 234 SEDSEKKKASSDQDTGKKRKVKSTGQDEQQERKKKKKKKQKEKGEDEQVYKGITDDETN- 292
            E  +K +  +   TGKKRK K T QD +  RKKKKKK++++    + V     DD  N 
Sbjct: 231 KETKKKARDDNSDATGKKRKDKGTDQDGESIRKKKKKKEKEKD---KAVITAEIDDNENK 287

Query: 293 -----AVLDGE-NKHDLKSQNVNQMDLDNKADDAPGDNLSEKKKRKRKKKKAQENEGNTR 346
                A+L  E  K D    N N+  L+  AD+ PG+N S+KKK+K+K KK +++  +  
Sbjct: 288 DLSKDAILQEEVKKQDSPDANSNKRGLNTDADNVPGENTSDKKKKKKKNKKNKDSGEDMS 347

Query: 347 TDQTISAVKEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSV 406
            +QT SAV  + + +  +E  QS AKSS +RTF NGLVIEE+AMGKPDGKRASPG QVS+
Sbjct: 348 KNQTASAVGAEAKTSLGSESNQSAAKSSHIRTFANGLVIEELAMGKPDGKRASPGSQVSM 407

Query: 407 RYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGA 466
            YIGKLKKNGKIFDSNVGRAPFKFRLG+G+VIKGWDVGVNGMRVGDKRRLTIPPSMGYG 
Sbjct: 408 HYIGKLKKNGKIFDSNVGRAPFKFRLGIGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGD 467

Query: 467 EGAGGKIPPNSWLVFDVELIDVR 489
            GAG KIPPNSWLVFDVEL++V+
Sbjct: 468 RGAGPKIPPNSWLVFDVELLNVK 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538942|ref|XP_003537959.1| PREDICTED: uncharacterized protein LOC100792856 [Glycine max] Back     alignment and taxonomy information
>gi|449499693|ref|XP_004160889.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356497385|ref|XP_003517541.1| PREDICTED: uncharacterized protein LOC100789099 [Glycine max] Back     alignment and taxonomy information
>gi|449460790|ref|XP_004148127.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455553|ref|XP_002268439.1| PREDICTED: uncharacterized protein LOC100258340 [Vitis vinifera] gi|296084130|emb|CBI24518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481299|ref|XP_003610935.1| FK506-binding protein [Medicago truncatula] gi|355512270|gb|AES93893.1| FK506-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074790|gb|ACJ85755.1| unknown [Medicago truncatula] gi|388519599|gb|AFK47861.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18416534|ref|NP_567717.1| peptidylprolyl isomerase [Arabidopsis thaliana] gi|75163771|sp|Q93ZG9.1|FKB53_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP53; Short=PPIase FKBP53; AltName: Full=FK506-binding protein 53; Short=AtFKBP53; AltName: Full=Immunophilin FKBP53; AltName: Full=Rotamase gi|15982872|gb|AAL09783.1| AT4g25340/T30C3_20 [Arabidopsis thaliana] gi|23506115|gb|AAN28917.1| At4g25340/T30C3_20 [Arabidopsis thaliana] gi|332659643|gb|AEE85043.1| peptidylprolyl isomerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5123924|emb|CAB45512.1| putative protein [Arabidopsis thaliana] gi|7269385|emb|CAB81345.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2138029477 FKBP53 "AT4G25340" [Arabidopsi 0.938 0.962 0.457 2.1e-100
UNIPROTKB|Q7XUX5525 OSJNBa0027P08.21 "Peptidyl-pro 0.668 0.622 0.418 5.9e-76
TAIR|locus:2092467499 AT3G12340 "AT3G12340" [Arabido 0.388 0.380 0.409 8.7e-65
UNIPROTKB|Q0J2V8416 Os09g0293900 "Peptidyl-prolyl 0.449 0.528 0.324 8.4e-48
DICTYBASE|DDB_G0285357364 DDB_G0285357 "FKBP-type peptid 0.282 0.379 0.480 1.6e-42
UNIPROTKB|Q7SCN0467 fpr-4 "FK506-binding protein 4 0.298 0.312 0.437 4.4e-41
TAIR|locus:2153519143 AT5G05420 "AT5G05420" [Arabido 0.276 0.944 0.617 2.9e-39
POMBASE|SPBC1347.02361 fkbp39 "FKBP-type peptidyl-pro 0.296 0.401 0.468 1.4e-36
UNIPROTKB|A8JAS8104 FKB53 "Peptidyl-prolyl cis-tra 0.212 1.0 0.676 6.5e-35
FB|FBgn0013269357 FK506-bp1 "FK506-binding prote 0.394 0.540 0.398 1.3e-34
TAIR|locus:2138029 FKBP53 "AT4G25340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 232/507 (45%), Positives = 299/507 (58%)

Query:     1 MGFWGIEVKPGKAHPYHSDNVPGKLHVTQATLGLGSSTEKSILQCSVGDRSPIFLCSLLP 60
             MGFWG+EVKPGK   Y+  N  GK+HVTQATLG G S EKS++QCS+GD++PI LCSLLP
Sbjct:     1 MGFWGLEVKPGKPQAYNPKNEQGKIHVTQATLGTGLSKEKSVIQCSIGDKAPIALCSLLP 60

Query:    61 NKNESCPLKLXXXXXXX-XXXSVKGPQSIHLAG---YFEAESGDHLRDEYDSDSYGEDIA 116
             NK E CPL L           +V G +SIHL+G   Y++ +  D+  DE DSD  G D+ 
Sbjct:    61 NKIECCPLNLEFDDDDEPVEFTVTGDRSIHLSGFLEYYQDDEDDYEHDEDDSD--GIDVG 118

Query:   117 ETETDESSGFXXXXXXXXXXXXXXXXXXF--Y--SSVPNSGVVIEEIEDD-KPMNGNDQP 171
             E+E D+S  +                     Y  ++ P SGV+IEEIED+ KP   N + 
Sbjct:   119 ESEEDDSCEYDSEEDEQLDEFEDFLDSNLERYRNAAAPKSGVIIEEIEDEEKPAKDN-KA 177

Query:   172 KRLKKKDVSSESE---RQIVVKNATGVPELESEDED--GFPISTSHKSKV--TSREAQVM 224
             K+ KKK  +SE E   +QIV      VP LESEDED  G PI     S+V   S E  V+
Sbjct:   178 KQTKKKSQASEGENAKKQIVAIEGAHVPVLESEDEDEDGLPIPKGKSSEVENASGEKMVV 237

Query:   225 ADEENGXXXXXXXXXXXXXXXXXTGKKRKVKSTXXXXXXXXXXXXXXXXXXXXXXXXVYK 284
              ++E G                 + KKRK K+                           +
Sbjct:   238 DNDEQG-----------------SNKKRKAKAAEQDDGQESANKSKKKKNQKEKKKG--E 278

Query:   285 GITDDETNAVLDGENKHDLKSQNVNQMDLDNKADDAPGDN-LSEXXXXXXXXXXAQENEG 343
              + ++E   V  G   + LK Q+++Q+  + KA D   +N +SE              E 
Sbjct:   279 NVLNEEAGQVQTG---NVLKKQDISQISSNTKAQDGTANNAMSESSKTPDKSA-----EK 330

Query:   344 NTRTDQTISAVKEKKEPASATE-QVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGK 402
              T+  +      E  E +   E Q  +++KSSQVRT+PNGL++EE++MGKP+GKRA PGK
Sbjct:   331 KTKNKKKKKPSDEAAEISGTVEKQTPADSKSSQVRTYPNGLIVEELSMGKPNGKRADPGK 390

Query:   403 QVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSM 462
              VSVRYIGKL+KNGKIFDSN+G++PFKFRLG+G VIKGWDVGVNGMRVGDKR+LTIPPSM
Sbjct:   391 TVSVRYIGKLQKNGKIFDSNIGKSPFKFRLGIGSVIKGWDVGVNGMRVGDKRKLTIPPSM 450

Query:   463 GYGAEGAGGKIPPNSWLVFDVELIDVR 489
             GYG +GAGG+IPPNSWL FDVELI+V+
Sbjct:   451 GYGVKGAGGQIPPNSWLTFDVELINVQ 477
GO:0000412 "histone peptidyl-prolyl isomerization" evidence=IBA
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0016020 "membrane" evidence=IBA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0005730 "nucleolus" evidence=IDA
GO:0006334 "nucleosome assembly" evidence=IMP
GO:0042393 "histone binding" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
UNIPROTKB|Q7XUX5 OSJNBa0027P08.21 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2092467 AT3G12340 "AT3G12340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0J2V8 Os09g0293900 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285357 DDB_G0285357 "FKBP-type peptidylprolyl cis-trans isomerase (PPIase)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q7SCN0 fpr-4 "FK506-binding protein 4" [Neurospora crassa OR74A (taxid:367110)] Back     alignment and assigned GO terms
TAIR|locus:2153519 AT5G05420 "AT5G05420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1347.02 fkbp39 "FKBP-type peptidyl-prolyl cis-trans isomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|A8JAS8 FKB53 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
FB|FBgn0013269 FK506-bp1 "FK506-binding protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZG9FKB53_ARATH5, ., 2, ., 1, ., 80.50690.94270.9664yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.766
4th Layer5.2.1.80.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT4G25340
immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related; immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related; FUNCTIONS IN- FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN- protein folding; LOCATED IN- nucleolus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro-IPR001179); BEST Arabidopsis thaliana protein match is- immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (TAIR-AT5G05420 [...] (477 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
NAP57
NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase; Encodes a putative pse [...] (565 aa)
   •    0.813
AT2G40360
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (753 aa)
   ••   0.811
AT3G05060
SAR DNA-binding protein, putative; SAR DNA-binding protein, putative, strong similarity to SAR [...] (533 aa)
   •    0.796
AT3G10530
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (536 aa)
   ••   0.794
HDA3
HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding; Enc [...] (245 aa)
   •   •0.790
AT3G07770
ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- protein folding; LOCATED IN- [...] (799 aa)
   •    0.788
AT4G25730
FtsJ-like methyltransferase family protein; FtsJ-like methyltransferase family protein; FUNCTIO [...] (821 aa)
   •    0.787
AT3G58660
60S ribosomal protein-related; 60S ribosomal protein-related; FUNCTIONS IN- structural constitu [...] (446 aa)
   •    0.780
HSP60-3A
HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding; HEAT SHOCK PROTEIN 60-3A (H [...] (572 aa)
   •    0.776
NOP56
NOP56 (Arabidopsis homolog of nucleolar protein Nop56); NOP56-like protein (522 aa)
   •    0.771

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 5e-40
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 4e-34
PRK11570206 PRK11570, PRK11570, peptidyl-prolyl cis-trans isom 9e-17
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 1e-13
COG1047174 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans 7e-08
pfam04615728 pfam04615, Utp14, Utp14 protein 2e-06
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 0.003
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  142 bits (361), Expect = 5e-40
 Identities = 68/166 (40%), Positives = 89/166 (53%), Gaps = 13/166 (7%)

Query: 332 KRKKKKAQENEGNTRTDQTIS----AVKEKKEPASATEQVQ---SEAKSSQVRTFPNGLV 384
               +K    E   R +Q +     A + K   A+A E        AK   V+T P+GL 
Sbjct: 45  LALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLPSGLQ 104

Query: 385 IEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDV 443
            + +  G  DG     G  V+V Y G L  +G +FDS+  R  P +F LG   VI GWD 
Sbjct: 105 YKVLKAG--DGAAPKKGDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDE 159

Query: 444 GVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489
           G+ GM+VG KR+LTIPP + YG  G  G IPPNS LVF+VEL+DV+
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205

Length = 205
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.95
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 99.94
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.93
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.92
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.9
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.9
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.88
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.85
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.77
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.57
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.56
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.49
PRK10737 196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.48
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.77
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 98.73
PRK01490 435 tig trigger factor; Provisional 98.63
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.31
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 96.96
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 96.72
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 86.41
PF10446458 DUF2457: Protein of unknown function (DUF2457); In 85.7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.95  E-value=3.5e-27  Score=222.89  Aligned_cols=119  Identities=50%  Similarity=0.915  Sum_probs=112.4

Q ss_pred             hhhhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHH
Q 011282          366 QVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVG  444 (489)
Q Consensus       366 ~~~~~~k~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~Gleea  444 (489)
                      ....+++...+.++++||+|++++.|  .|..|..++.|.+||+|++ .||++|||++.+ .|+.|.||  .+|+||.+|
T Consensus        86 f~~~~~k~~~v~~~~sgl~y~~~~~G--~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~eg  160 (205)
T COG0545          86 FLEKNAKEKGVKTLPSGLQYKVLKAG--DGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEG  160 (205)
T ss_pred             HHhhhcccCCceECCCCcEEEEEecc--CCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHH
Confidence            34567778899999999999999999  7999999999999999999 899999999987 89999997  999999999


Q ss_pred             hcCCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282          445 VNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR  489 (489)
Q Consensus       445 L~gMkvGek~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr  489 (489)
                      |.+|++|++|+|+|||.+|||..|.++.||||++|+|+|+||+|+
T Consensus       161 l~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         161 LQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             HhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence            999999999999999999999999777799999999999999985

>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 9e-26
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-25
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-25
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 2e-25
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 4e-25
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 7e-25
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 9e-25
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 2e-24
2vn1_A129 Crystal Structure Of The Fk506-Binding Domain Of Pl 1e-20
2ofn_A135 Solution Structure Of Fk506-Binding Domain (Fkbd)of 1e-20
2ki3_A126 Structural And Biochemical Characterization Of Fk50 2e-20
1u79_A129 Crystal Structure Of Atfkbp13 Length = 129 1e-19
1yat_A113 Improved Calcineurin Inhibition By Yeast Fkbp12-Dru 2e-19
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 6e-19
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 3e-18
2lgo_A130 Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol 6e-17
1c9h_A107 Crystal Structure Of Fkbp12.6 In Complex With Rapam 1e-16
1fkk_A107 Atomic Structure Of Fkbp12, An Immunophilin Binding 1e-16
1tco_C107 Ternary Complex Of A Calcineurin A Fragment, Calcin 2e-16
3h9r_B109 Crystal Structure Of The Kinase Domain Of Type I Ac 2e-16
2fap_A107 The Structure Of The Immunophilin-Immunosuppressant 2e-16
1jvw_A167 Trypanosoma Cruzi Macrophage Infectivity Potentiato 2e-16
1fkb_A107 Atomic Structure Of The Rapamycin Human Immunophili 2e-16
2ppp_A107 Crystal Structure Of E60q Mutant Of Fkbp12 Length = 3e-16
3uqi_A108 Crystallographic Structure Of Fkbp12 From Aedes Aeg 3e-16
2ppo_A107 Crystal Structure Of E60a Mutant Of Fkbp12 Length = 4e-16
1bkf_A107 Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX 5e-16
1kt1_A 457 Structure Of The Large Fkbp-Like Protein, Fkbp51, I 9e-16
1kt0_A 457 Structure Of The Large Fkbp-like Protein, Fkbp51, I 1e-15
2pbc_A102 Fk506-Binding Protein 2 Length = 102 1e-15
1eym_A107 Fk506 Binding Protein Mutant, Homodimeric Complex L 1e-15
2dg4_A107 Fk506-Binding Protein Mutant Wf59 Complexed With Ra 1e-15
1bl4_A107 Fkbp Mutant F36v Complexed With Remodeled Synthetic 2e-15
1rot_A149 Structure Of Fkbp59-I, The N-Terminal Domain Of A 5 2e-15
3o5e_A144 Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144 3e-15
3jxv_A 356 Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk 3e-15
3jym_A 377 Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk 3e-15
2dg9_A107 Fk506-Binding Protein Mutant Wl59 Complexed With Ra 3e-15
4drh_A144 Co-crystal Structure Of The Ppiase Domain Of Fkbp51 3e-15
3o5d_A 264 Crystal Structure Of A Fragment Of Fkbp51 Comprisin 5e-15
3o5l_A128 Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le 6e-15
3o5g_A128 Fk1 Domain Of Fkbp51, Crystal Form I Length = 128 7e-15
1n1a_A140 Crystal Structure Of The N-Terminal Domain Of Human 1e-14
1q1c_A 280 Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt 2e-14
4drj_A144 O-crystal Structure Of The Ppiase Domain Of Fkbp52, 2e-14
3oe2_A219 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran 6e-14
1pbk_A116 Homologous Domain Of Human Fkbp25 Length = 116 2e-13
3kz7_A119 C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple 2e-13
1q6u_A245 Crystal Structure Of Fkpa From Escherichia Coli Len 2e-13
1q6h_A224 Crystal Structure Of A Truncated Form Of Fkpa From 2e-13
1r9h_A135 Structural Genomics Of C.Elegans: Fkbp-Type Peptidy 7e-12
3b7x_A134 Crystal Structure Of Human Fk506-Binding Protein 6 1e-08
1fd9_A213 Crystal Structure Of The Macrophage Infectivity Pot 1e-08
2uz5_A137 Solution Structure Of The Fkbp-Domain Of Legionella 5e-08
1ix5_A151 Solution Structure Of The Methanococcus Thermolitho 2e-05
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
           S V T  +GL  E++  G   G  A  G+ VSV Y G L  +G+ FDS+  R  PF+F L
Sbjct: 97  STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFEFVL 153
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDV 488
           G G VIKGWD GV GM+VG  RRLTIPP +GYGA GAGG IPPN+ LVF+VEL+DV
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129 Back     alignment and structure
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135 Back     alignment and structure
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126 Back     alignment and structure
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129 Back     alignment and structure
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130 Back     alignment and structure
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107 Back     alignment and structure
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107 Back     alignment and structure
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107 Back     alignment and structure
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109 Back     alignment and structure
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107 Back     alignment and structure
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167 Back     alignment and structure
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107 Back     alignment and structure
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108 Back     alignment and structure
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107 Back     alignment and structure
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 Back     alignment and structure
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 Back     alignment and structure
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102 Back     alignment and structure
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107 Back     alignment and structure
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107 Back     alignment and structure
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149 Back     alignment and structure
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144 Back     alignment and structure
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356 Back     alignment and structure
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377 Back     alignment and structure
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144 Back     alignment and structure
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264 Back     alignment and structure
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128 Back     alignment and structure
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128 Back     alignment and structure
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140 Back     alignment and structure
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280 Back     alignment and structure
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144 Back     alignment and structure
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219 Back     alignment and structure
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116 Back     alignment and structure
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119 Back     alignment and structure
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245 Back     alignment and structure
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224 Back     alignment and structure
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135 Back     alignment and structure
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134 Back     alignment and structure
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213 Back     alignment and structure
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137 Back     alignment and structure
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus Thermolithotrophicus Fkbp Length = 151 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 6e-54
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 6e-51
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 6e-51
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 1e-49
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 2e-49
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 2e-49
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 1e-48
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 4e-48
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 4e-48
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 1e-47
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 2e-47
2ppn_A107 FK506-binding protein 1A; high resolution protein 4e-47
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 2e-45
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 1e-43
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 1e-41
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 4e-41
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 1e-40
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 3e-40
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 2e-27
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 2e-39
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 6e-39
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-32
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 5e-28
1fd9_A213 Protein (macrophage infectivity potentiator prote; 1e-34
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 3e-34
1jvw_A167 Macrophage infectivity potentiator; chagas disease 3e-33
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 2e-31
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 1e-25
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 1e-18
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 1e-17
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 2e-13
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 2e-13
2kfw_A 196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 7e-13
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 8e-13
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 5e-11
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 8e-11
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 5e-10
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 1e-09
1nlq_A108 Nucleoplasmin-like protein; DNLP, chaperone, histo 2e-08
3prb_A 231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 2e-04
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 2e-04
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
 Score =  176 bits (448), Expect = 6e-54
 Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 371 AKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR---AP 427
            +S         + IE +       ++   G  + V Y G L+K+G +F S        P
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 428 FKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELID 487
             F LG+ E +KGWD G+ GM VG+KR+L IPP++GYG EG G  IPP S L+F+++L++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

Query: 488 VR 489
           +R
Sbjct: 121 IR 122
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151 Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171 Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169 Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Back     alignment and structure
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1 Length = 108 Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
1nlq_A108 Nucleoplasmin-like protein; DNLP, chaperone, histo 99.92
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.91
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.91
1xe0_A114 Nucleophosmin; drosophila nucleoplasmin-like prote 99.91
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.9
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.9
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.9
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.9
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.9
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.89
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.89
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.89
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.89
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.89
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.89
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.89
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.89
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.89
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.88
1k5j_A124 Nucleoplasmin core; beta-barrel, jellyroll, beta-b 99.88
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.88
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.88
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.88
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.87
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.86
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.84
3t30_B110 Nucleoplasmin-2; beta-barrel jelly roll topology, 99.83
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.81
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.78
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.77
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.77
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.74
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.69
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.61
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.61
2kfw_A 196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.6
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.6
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.6
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.59
3prb_A 231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.56
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.54
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.49
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.45
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.26
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.07
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.07
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 97.65
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1 Back     alignment and structure
Probab=99.92  E-value=2.6e-25  Score=191.59  Aligned_cols=95  Identities=19%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             ceEEEEEcCCC-ceeeecCCC---CCeEEEEEEEeCCCCC-CCcEEEEEEe-CCCcceEEEeeCCCCccceeceeeeCCC
Q 011282            2 GFWGIEVKPGK-AHPYHSDNV---PGKLHVTQATLGLGSS-TEKSILQCSV-GDRSPIFLCSLLPNKNESCPLKLEFDED   75 (489)
Q Consensus         2 ~FwG~eVkpgk-~~~~~~~~~---~~~LhLsqa~Lg~~~~-~e~~~v~~~v-~~~~~~~L~tL~~~~~eq~~LdL~F~~~   75 (489)
                      +||||+|++++ +++|+++++   +.+|||+|||||++++ +++++|+|+. ++..+++||||.+++++||+|+|.|. +
T Consensus         5 ~fwG~eLk~~k~~~~f~~~~d~~~eh~L~L~~a~LG~~aK~dE~~vVev~~~~~~~kv~LatLk~~~~~~~~l~l~f~-~   83 (108)
T 1nlq_A            5 SFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIAVLKAGETRAVNPDVEFY-E   83 (108)
T ss_dssp             EEEEEEECSTTCEEEECTTSSCCSCCEEEEEEEEECTTSCBTCEEEEEEEEGGGTEEEEEEEEEBTTBSEECCCEEEE-S
T ss_pred             eEEEEEEcCCCceeEECCCCCcCcccEEEEEEEEcCCCccCCCcEEEEEEeCCCCcEEEEEEECCCCcceEecceEEe-C
Confidence            79999999995 999999775   3499999999999998 8999999998 56678999999999999999999995 4


Q ss_pred             CcEEEEEe-cCccEEEeeeeeec
Q 011282           76 DVVVFSVK-GPQSIHLAGYFEAE   97 (489)
Q Consensus        76 ~~V~f~v~-G~~~VHlsGy~~~~   97 (489)
                      .+|+|+|+ |+||||||||++.+
T Consensus        84 ~pVtf~L~~GsGPVhisG~h~~~  106 (108)
T 1nlq_A           84 SKVTFKLIKGSGPVYIHGHNIKD  106 (108)
T ss_dssp             SCEEEEEEESCCCEEEEEEEECC
T ss_pred             CCEEEEEEecCCCEEEEeEEEec
Confidence            56999985 99999999999864
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 2e-26
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 5e-25
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 1e-23
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 3e-23
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 3e-21
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 9e-21
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 1e-20
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 2e-20
d1nlqa_105 b.121.3.1 (A:) Chromatin decondensation protein 1 6e-20
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 3e-18
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 8e-18
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 1e-17
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 2e-14
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 2e-13
d1ix5a_151 d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu 2e-09
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 2e-26
 Identities = 61/195 (31%), Positives = 84/195 (43%), Gaps = 11/195 (5%)

Query: 300 KHDLKSQNVNQMDLDNKA-----DDAPGDNLSEKKKRKRKKKKAQENEGNTRTDQTISAV 354
           ++ LK Q    + LD         DA  D      +   +  +A E    +     +   
Sbjct: 22  ENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKD 81

Query: 355 KEKKEPASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKK 414
                 A   E  +  AK   V+T   GLV + V  G   G+       V V Y G L  
Sbjct: 82  AADN-EAKGKEYREKFAKEKGVKTSSTGLVYQVVEAG--KGEAPKDSDTVVVNYKGTLI- 137

Query: 415 NGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIP 474
           +GK FD++  R        +  VI GW  G+  ++ G K +L IPP + YG  G  G IP
Sbjct: 138 DGKEFDNSYTR-GEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IP 195

Query: 475 PNSWLVFDVELIDVR 489
           PNS LVFDVEL+DV+
Sbjct: 196 PNSTLVFDVELLDVK 210
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.92
d1nlqa_105 Chromatin decondensation protein 1 (Crp1, Nlp) {Fr 99.92
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.92
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.92
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.92
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.91
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.91
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.91
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.9
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.89
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.85
d1xe0a_108 Nucleophosmin (NO38) {African clawed frog (Xenopus 99.83
d1k5ja_105 Nucleoplasmin core {Xenopus laevis [TaxId: 8355]} 99.82
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.81
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.55
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.46
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 98.86
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 98.8
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=9.9e-26  Score=213.40  Aligned_cols=117  Identities=31%  Similarity=0.650  Sum_probs=108.4

Q ss_pred             hhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhc
Q 011282          368 QSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVN  446 (489)
Q Consensus       368 ~~~~k~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~  446 (489)
                      ..+++.+.++++++||+|++++.|  +|..|..||.|.|||++++ .||++|++++.+ .|+.|.+  +.+|+||++||.
T Consensus        85 ~~~~~~~~v~~~~sGl~y~v~~~G--~G~~p~~~d~v~v~y~g~l-~dg~~f~~s~~~~~p~~~~~--~~~i~G~~e~l~  159 (204)
T d1fd9a_          85 TENKNKPGVVVLPSGLQYKVINSG--NGVKPGKSDTVTVEYTGRL-IDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ  159 (204)
T ss_dssp             HHHHHSTTEEECTTSCEEEEEECC--CSCCCCTTCEEEEEEEEEE-TTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHT
T ss_pred             HhcccCCceEEecCccEEEEeecC--CCcccCCCCEEEEEEEEEE-CCCCEecccccCCCCceecC--CccchhHHHHhc
Confidence            445666799999999999999999  7999999999999999999 799999999865 7888877  579999999999


Q ss_pred             CCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282          447 GMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR  489 (489)
Q Consensus       447 gMkvGek~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr  489 (489)
                      +|++|++++|+|||.+|||..|.++.||||++|+|+|+|++|+
T Consensus       160 ~m~~G~~~~~~iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~  202 (204)
T d1fd9a_         160 LMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  202 (204)
T ss_dssp             TCCTTCEEEEEECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEChHHCcCCCCCCCCcCcCCcEEEEEEEEEEE
Confidence            9999999999999999999999988899999999999999984
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId: 8355]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure