Citrus Sinensis ID: 011310

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MLDQNQGSVLNQGRIKVVAAKGKLKMSVNRVTEDSRTRRNVGGRNFKVYSENEMVKEDSNTIKNSVPVKNGAALASASNAKGIVNKMENNKGKDANTASSKVGRKALVDVSNIKGNVPRSVVHDGSKSLKGERSAILQQVSVGSGVRTVNVSSRKSFTGRVRKNISQDVGAIHTSKKDNADVKGSKSSLNDKHTKTKDMGRETVVTANRMSRNPPVPTRKSLPVFKRVNQSITSTSKPIVKTAILASNARGTSKSKCLSSLKKSKSIAATSTKKKKDVVRSSPLENIASVVSHEAIQGKPSIDGNTNSSTNSSDIISKKKSDRRRSYTSLLMAKSKLIDENGEVKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
ccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccEEEEcccccHHHHHHHHHHHHHcccc
ccccccccEEccccEEEEEccccccccccccccccccccEccccEEEEEEccccccccccccEEEEEEcccEEEEcccccccccccEEcccccccccccccccHHHHHEHHccccccccEEEcccccEEEEEEcccccccccccccccccccccccHHHcccccHHcccccccccHHHHHHHcccccccccHHcHHHHccccccccHHHcccccccccccccccHcccccccccccccccccHHHHHHHHHHHHcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHcHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHccHHHHHHHHHHHHHHccc
mldqnqgsvlnqGRIKVVAAKGKLKMSVNrvtedsrtrrnvggrnfkvysenemvkedsntiknsvpvkngaaLASASNAKGIVNKmennkgkdantasskvGRKALVDVsnikgnvprsvvhdgskslkgeRSAILQQVSVgsgvrtvnvssrksftGRVRKNISQdvgaihtskkdnadvkgsksslndkhtktkdmgRETVVTAnrmsrnppvptrkslpvfkrvnqsitstskpIVKTAILasnargtsksKCLSSLKKSKSiaatstkkkkdvvrsspleniasvvsheaiqgkpsidgntnsstnssdiiskkksdrRRSYTSLLMAKSKLidengevkmenlpgidddcnqLEVAEYVDEIYHYYWVMeaqnpplenymssqtditpQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASkyedfwhprvKDLISISETYTRDHMLRMVCILNGLNLF
mldqnqgsvlnqgrikvvaakgklkmsvnrvtedsrtrrnvggrnfkvysenemvkedsntiknsvpvKNGAALASASNAKGIVNkmennkgkdantasskvgrkalvdvsnikgnvprsvvhdgskslkgersailqqvsvgsgvrtvnvssrksftgrvrknisqdvgaihtskkdnadvkgsksslndkhtktkdmgretvvtanrmsrnppvptrkslpvfkrvnqsitstskpivktailasnargtskskclsslkksksiaatstkkkkdvvrsspleniasvvsheaiqgkpsidgntnsstnssdiiskkksdrrrsYTSLLMAksklidengeVKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIsetytrdhMLRMVCILNGLNLF
MLDQNQGSVLNQGRIKVVAAKGKLKMSVNRVTEDSRTRRNVGGRNFKVYSENEMVKEDSNTIKNSVPVKNGAALASASNAKGIVNKMENNKGKDANTASSKVGRKALVDVSNIKGNVPRSVVHDGSKSLKGERSAILQQVSVGSGVRTVNVSSRKSFTGRVRKNISQDVGAIHTSKKDNADVKGSKSSLNDKHTKTKDMGRETVVTANRMSRNPPVPTRKSLPVFKRVNQSITSTSKPIVKTAILASNARGTskskclsslkksksiaatstkkkkDVVRSSPLENIASVVSHEAIQGKPsidgntnsstnssdiiskkksdrrrsytsLLMAKSKLIDENGEVKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************NLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYM**QTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLN**
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************NLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
********VLNQGRIKVVAAKGKLKMSVNRVTEDSRTRRNVGGRNFKVYSENEMVKEDSNTIKNSVPVKNGAALASASNAKGIVNKMENNKGKDANTASSKVGRKALVDVSNIKGNVPRSVVHDGSKSLKGERSAILQQVSVGSGVRTVNVSSRKSFTGRVRKNISQDVGAIH**********************TKDMGRETVVTANRMSRNPPVPTRKSLPVFKRVNQSITSTSKPIVKTAILASN********************************SSPLENIASVVSHEAIQGKPSIDGN********************SYTSLLMAKSKLIDENGEVKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
******GSVLNQGRIKVVAAKGKLK**************NVGGRNFKVYSENEMVKEDSNTIKNSVPVKNGAALASA*********************SSKVGRKALVDVSNIKGNVPRSVVHDGSKSLKGERSAILQQVSV*********************************************************************************************************************************************************************************************************VKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
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MLDQNQGSVLNQGRIKVVAAKGKLKMSVNRVTEDSRTRRNVGGRNFKVYSENEMVKEDSNTIKNSVPVKNGAALASASNAKGIVNKMENNKGKDANTASSKVGRKALVDVSNIKGNVPRSVVHDGSKSLKGERSAILQQVSVGSGVRTVNVSSRKSFTGRVRKNISQDVGAIHTSKKDNADVKGSKSSLNDKHTKTKDMGRETVVTANRMSRNPPVPTRKSLPVFKRVNQSITSTSKPIVKTAILASNARGTSKSKCLSSLKKSKSIAATSTKKKKDVVRSSPLENIASVVSHEAIQGKPSIDGNTNSSTNSSDIISKKKSDRRRSYTSLLMAKSKLIDENGEVKMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVCILNGLNLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
Q9SA32 396 Putative cyclin-B3-1 OS=A no no 0.398 0.492 0.598 1e-63
Q0DH40 449 Cyclin-B1-5 OS=Oryza sati yes no 0.306 0.334 0.461 6e-35
Q0JIF2 449 Cyclin-B1-1 OS=Oryza sati no no 0.343 0.374 0.433 3e-33
P25011 454 G2/mitotic-specific cycli no no 0.429 0.462 0.372 1e-31
P34801 441 G2/mitotic-specific cycli N/A no 0.441 0.489 0.366 3e-30
Q0JNK6 470 Cyclin-B1-3 OS=Oryza sati no no 0.329 0.342 0.425 4e-29
Q39067 445 Cyclin-B1-2 OS=Arabidopsi no no 0.337 0.370 0.418 5e-29
P46277 428 G2/mitotic-specific cycli N/A no 0.288 0.329 0.469 6e-29
Q39069 414 Cyclin-B1-3 OS=Arabidopsi no no 0.335 0.396 0.389 9e-29
Q0D9C7 419 Cyclin-B2-2 OS=Oryza sati no no 0.286 0.334 0.482 1e-28
>sp|Q9SA32|CCB31_ARATH Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 149/197 (75%), Gaps = 2/197 (1%)

Query: 285 ENIASVVSHEAIQGKPSIDGNTNSSTNSSDIISKKKSDRRRSYTSLLMAKSKLIDENGEV 344
           E + +    E  QG+ S  GN + +T   D+ +K KS RR+S+TSLL+  SK  ++NGE 
Sbjct: 63  EKVETKCLEEDTQGESSSSGNKDPTTKVLDVTAKPKSKRRKSFTSLLVNGSKFDEKNGET 122

Query: 345 -KMENLPGIDDDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINW 403
            + E LP IDD+ NQLEVAEYVD+IY +YW  EA NP L +Y+S+  +++P  RGILINW
Sbjct: 123 TEPEKLPSIDDESNQLEVAEYVDDIYQFYWTAEALNPALGHYLSAHAEVSPVTRGILINW 182

Query: 404 LIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKD 463
           LIEVH KFDLM ETLYL + LLDRYLS+V I KNEMQL+GLT+LLLASKYED+WHPR+KD
Sbjct: 183 LIEVHFKFDLMHETLYLTMDLLDRYLSQVPIHKNEMQLIGLTALLLASKYEDYWHPRIKD 242

Query: 464 LISIS-ETYTRDHMLRM 479
           LISIS E+YTR+ +L M
Sbjct: 243 LISISAESYTREQILGM 259

Arabidopsis thaliana (taxid: 3702)
>sp|Q0DH40|CCB15_ORYSJ Cyclin-B1-5 OS=Oryza sativa subsp. japonica GN=CYCB1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q0JIF2|CCB11_ORYSJ Cyclin-B1-1 OS=Oryza sativa subsp. japonica GN=CYCB1-1 PE=2 SV=2 Back     alignment and function description
>sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P34801|CCN2_ANTMA G2/mitotic-specific cyclin-2 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|Q0JNK6|CCB13_ORYSJ Cyclin-B1-3 OS=Oryza sativa subsp. japonica GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q39067|CCB12_ARATH Cyclin-B1-2 OS=Arabidopsis thaliana GN=CYCB1-2 PE=1 SV=2 Back     alignment and function description
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q39069|CCB13_ARATH Cyclin-B1-3 OS=Arabidopsis thaliana GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
297736122 604 unnamed protein product [Vitis vinifera] 0.928 0.751 0.521 1e-117
255549526460 cyclin B, putative [Ricinus communis] gi 0.505 0.536 0.668 2e-87
359494635 673 PREDICTED: putative cyclin-B3-1-like [Vi 0.515 0.374 0.634 5e-84
449524480 629 PREDICTED: putative cyclin-B3-1-like [Cu 0.887 0.689 0.402 6e-82
449444270 594 PREDICTED: putative cyclin-B3-1-like [Cu 0.740 0.609 0.419 3e-75
224098844333 predicted protein [Populus trichocarpa] 0.380 0.558 0.714 6e-74
356523537562 PREDICTED: putative cyclin-B3-1-like [Gl 0.693 0.603 0.429 6e-74
224112315333 predicted protein [Populus trichocarpa] 0.388 0.570 0.711 8e-74
334182617 648 cyclin B3-1 [Arabidopsis thaliana] gi|33 0.883 0.666 0.381 3e-68
147636373396 RecName: Full=Putative cyclin-B3-1; AltN 0.398 0.492 0.598 8e-62
>gi|297736122|emb|CBI24160.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/495 (52%), Positives = 326/495 (65%), Gaps = 41/495 (8%)

Query: 17  VVAAKGKLKMSVNRVTEDSRTRRNVGGRNFKVYSENEMVKEDS------NTIKNSVPVKN 70
           +VA KGKL  + +RV  D + R++VG  +FKVYSENE V   S      ++ + SV    
Sbjct: 1   MVAVKGKLNAAPSRVAGDKKNRKSVG-LSFKVYSENERVNVGSRDSVGTSSTRKSVQFNK 59

Query: 71  GAALASASNAKGIVNKMENNKGKDANTASSKVGRKALVDVSNIKGNVPRSVVHDGSKSLK 130
           G   +++S++KG +   E +K K     SS V RKAL DVSN++GN   + + DGSKS+ 
Sbjct: 60  GTVQSNSSDSKGNLKSFEKDKDK---RNSSFVRRKALADVSNVQGNCSTTSMRDGSKSV- 115

Query: 131 GERSAILQQVSVGSGVRTVNVSSRKSFTGRVRKNISQDVGAIHTSKKDNADVKGSKSSLN 190
                    V++G G  TV  SSRK   G++  NISQ  G  +TSK+  A  K  K+S N
Sbjct: 116 ---------VTLGQGTITVCASSRKPSMGKMGTNISQGAGVCNTSKR--ASAKNLKASSN 164

Query: 191 DKHTKTKDMGRETVVTANRMSRNPPVPTRKSLPVFKRVNQSITSTSK------------P 238
           ++ TK  D GRE+V  A R +R   V TRKSLPV +RVN+   S  K            P
Sbjct: 165 NQMTK--DKGRESVNNAQRTARLSHVLTRKSLPVIRRVNKVDRSDLKLFELFLYFIEIQP 222

Query: 239 IVKTAILASNARG--TSKSKCLSSLKKSKSIAATSTKKKKDVVRSSPLENIASVVSHEAI 296
            ++T +  SN +   T KSK  S L KS S AA S+K K+ +V SS  E+I  V  ++  
Sbjct: 223 TLRTTVKTSNVQTQRTLKSKRTSVLDKSISGAAISSKNKEKLVPSSLPESIGFVGPYQPA 282

Query: 297 QGKPSIDGNTNSSTNSSDIISKKKSDRRRSYTSLLMAKSKLIDENGEV-KMENLPGIDDD 355
           QG+   DGN ++STN+SDI +++KSDRRRS+T  LM +SK ++E+GE  K+E LP IDD+
Sbjct: 283 QGELPPDGNASTSTNTSDINNRRKSDRRRSFTLSLMTRSKQLEEHGEFRKLEKLPSIDDN 342

Query: 356 CNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMP 415
           CN LEVAEYV+EIY YYWV EAQNP ++NYMS Q+DITPQMRGILINWLIEVH KF+LM 
Sbjct: 343 CNHLEVAEYVEEIYQYYWVTEAQNPSMQNYMSIQSDITPQMRGILINWLIEVHYKFELMQ 402

Query: 416 ETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRD 474
           ETLYLMV L DRYLS V IKKN+MQLVGLT+LLLASKYEDFWHPRVKDLISIS E+YTRD
Sbjct: 403 ETLYLMVTLFDRYLSLVPIKKNDMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRD 462

Query: 475 HMLRMV-CILNGLNL 488
            ML M   +LN L  
Sbjct: 463 QMLGMEKVVLNKLKF 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549526|ref|XP_002515815.1| cyclin B, putative [Ricinus communis] gi|223545044|gb|EEF46557.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359494635|ref|XP_002264188.2| PREDICTED: putative cyclin-B3-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449524480|ref|XP_004169250.1| PREDICTED: putative cyclin-B3-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444270|ref|XP_004139898.1| PREDICTED: putative cyclin-B3-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224098844|ref|XP_002311288.1| predicted protein [Populus trichocarpa] gi|222851108|gb|EEE88655.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523537|ref|XP_003530394.1| PREDICTED: putative cyclin-B3-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224112315|ref|XP_002316151.1| predicted protein [Populus trichocarpa] gi|222865191|gb|EEF02322.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334182617|ref|NP_173083.3| cyclin B3-1 [Arabidopsis thaliana] gi|332191315|gb|AEE29436.1| cyclin B3-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147636373|sp|Q9SA32.2|CCB31_ARATH RecName: Full=Putative cyclin-B3-1; AltName: Full=G2/mitotic-specific cyclin-B3-1; Short=CycB3;1 Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2160722 445 CYC1BAT [Arabidopsis thaliana 0.321 0.352 0.426 2.3e-28
TAIR|locus:2126377 428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.304 0.348 0.431 5e-28
TAIR|locus:2043818 387 CYCB1;4 "Cyclin B1;4" [Arabido 0.298 0.377 0.406 2.2e-27
TAIR|locus:2080717 414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.312 0.369 0.415 2.8e-27
TAIR|locus:2014574 431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.282 0.320 0.489 5.6e-26
TAIR|locus:2030482 429 CYCB2;3 "Cyclin B2;3" [Arabido 0.282 0.321 0.462 2.1e-25
TAIR|locus:2057243 429 CYCB2;1 "Cyclin B2;1" [Arabido 0.288 0.328 0.46 3.2e-25
UNIPROTKB|G4MNM0 494 MGG_05646 "G2/mitotic-specific 0.278 0.275 0.420 3.9e-25
TAIR|locus:2127948 429 CYCB2;2 "Cyclin B2;2" [Arabido 0.296 0.337 0.46 4.5e-24
FB|FBgn0000405 530 CycB "Cyclin B" [Drosophila me 0.271 0.250 0.4 2.7e-23
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 312 (114.9 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 70/164 (42%), Positives = 105/164 (64%)

Query:   330 LLMAKSKLIDENGEVKMENLPGID--DDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMS 387
             +L A+SK     G V    +  ID  D  N L   EYVD++Y +Y  +E ++ P + YM 
Sbjct:   148 VLSARSKAAC--GIVNKPKIIDIDESDKDNHLAAVEYVDDMYSFYKEVEKESQP-KMYMH 204

Query:   388 SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSL 447
              QT++  +MR ILI+WL+EVH+KF+L  ETLYL V ++DR+LS   + K E+QLVG+++L
Sbjct:   205 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRELQLVGISAL 264

Query:   448 LLASKYEDFWHPRVKDLISISET-YTRDHMLRMV-CILNGLNLF 489
             L+ASKYE+ W P+V DL+ +++  Y+   +L M   IL  L  +
Sbjct:   265 LIASKYEEIWPPQVNDLVYVTDNAYSSRQILVMEKAILGNLEWY 308
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0010332 "response to gamma radiation" evidence=IEP
GO:0005737 "cytoplasm" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MNM0 MGG_05646 "G2/mitotic-specific cyclin-B" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0000405 CycB "Cyclin B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-51
COG5024 440 COG5024, COG5024, Cyclin [Cell division and chromo 1e-27
cd0004388 cd00043, CYCLIN, Cyclin box fold 7e-21
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-18
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  170 bits (434), Expect = 1e-51
 Identities = 58/123 (47%), Positives = 89/123 (72%), Gaps = 2/123 (1%)

Query: 367 EIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLD 426
           +IY Y   +E ++ P  +Y+  Q DI P+MR ILI+WL+EVH +F L+PETLYL V  LD
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 427 RYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISE-TYTRDHMLRM-VCILN 484
           R+LS+  + + ++QLVG+T LL+A+KYE+ + P V+D + I++  YT++ +LRM + IL+
Sbjct: 61  RFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 485 GLN 487
            LN
Sbjct: 121 TLN 123

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
KOG0653 391 consensus Cyclin B and related kinase-activating p 99.97
COG5024 440 Cyclin [Cell division and chromosome partitioning] 99.96
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 99.95
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.94
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 99.89
KOG0654 359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.83
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.51
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.44
TIGR00569 305 ccl1 cyclin ccl1. University). 99.29
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 98.97
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 98.46
KOG0835 367 consensus Cyclin L [General function prediction on 98.32
KOG0794 264 consensus CDK8 kinase-activating protein cyclin C 98.26
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.24
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.22
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 97.17
PRK00423310 tfb transcription initiation factor IIB; Reviewed 96.87
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 93.27
KOG1674218 consensus Cyclin [General function prediction only 92.73
KOG1597 308 consensus Transcription initiation factor TFIIB [T 89.66
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 86.94
PRK00423310 tfb transcription initiation factor IIB; Reviewed 81.46
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.97  E-value=3.9e-32  Score=280.61  Aligned_cols=140  Identities=45%  Similarity=0.768  Sum_probs=130.0

Q ss_pred             CCCCC--CCCCcchhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 011310          349 LPGID--DDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLD  426 (489)
Q Consensus       349 lpdiD--D~~dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLD  426 (489)
                      +.|+|  |..+|+++.||++|||.||+.+|..+.| ..|+..|+++++.||.+|+|||++||.+|+|.+|||||||+|+|
T Consensus       109 ~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p-~~~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliD  187 (391)
T KOG0653|consen  109 ILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLP-LSYDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLID  187 (391)
T ss_pred             ccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCc-hhhhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHH
Confidence            44555  7789999999999999999999963343 45668899999999999999999999999999999999999999


Q ss_pred             HhhhccccCCCCeeEehhhhhh-hhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310          427 RYLSEVKIKKNEMQLVGLTSLL-LASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF  489 (489)
Q Consensus       427 RYLS~~~V~r~kLQLVGiTCLf-IASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD  489 (489)
                      |||+...|++.+|||||++||| ||+||||.++|.+.||++++ ++||++||++||+ ||++|+|+
T Consensus       188 RfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~  253 (391)
T KOG0653|consen  188 RFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFD  253 (391)
T ss_pred             HHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCee
Confidence            9999988999999999999976 99999999999999999999 9999999999999 99999996

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
1vyw_B 265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 6e-21
1ogu_B 260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 7e-21
4bcq_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 8e-21
4bco_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 8e-21
3ddq_B 269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-21
3ddp_B 268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-21
3bht_B 262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-21
2g9x_B 262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 9e-21
1vin_A 268 Bovine Cyclin A3 Length = 268 9e-21
4bcq_D 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-21
2x1n_B 261 Truncation And Optimisation Of Peptide Inhibitors O 9e-21
1fin_B 260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 9e-21
3dog_B 264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-20
1qmz_B 259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-20
3qhr_B 261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 3e-20
1jst_B 258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 4e-20
1e9h_B 261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 4e-20
3f5x_B 256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 1e-19
4ii5_B 258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 1e-19
4i3z_B 257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 1e-19
2b9r_A 269 Crystal Structure Of Human Cyclin B1 Length = 269 3e-19
2jgz_B 260 Crystal Structure Of Phospho-Cdk2 In Complex With C 2e-18
1w98_B 283 The Structural Basis Of Cdk2 Activation By Cyclin E 4e-09
3g33_B 306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 3e-07
2w9z_A 257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-06
2w96_A 271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-06
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 360 EVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLY 419
           EV +Y ++I+ Y   ME +  P   YM  Q DIT  MR IL++WL+EV  ++ L  ETL+
Sbjct: 7   EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLH 66
Query: 420 LMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLR 478
           L V  +DR+LS + + + ++QLVG  ++LLASK+E+ + P V + + I+ +TYT+  +LR
Sbjct: 67  LAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 126
Query: 479 M 479
           M
Sbjct: 127 M 127
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 7e-61
2f2c_A 254 Cyclin homolog, V-cyclin; small molecule inhibitor 7e-58
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-57
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 2e-55
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-54
1g3n_C 257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-54
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-51
1f5q_B 252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 4e-47
2i53_A 258 Cyclin K; cell cycle, transcription, cyclin BOX, C 8e-14
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 2e-06
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 7e-04
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  199 bits (507), Expect = 7e-61
 Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 360 EVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLY 419
           EV +Y ++I+ Y   ME +  P   YM  Q DIT  MR IL++WL+EV  ++ L  ETL+
Sbjct: 2   EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLH 61

Query: 420 LMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISE-TYTRDHMLR 478
           L V  +DR+LS + + + ++QLVG  ++LLASK+E+ + P V + + I++ TYT+  +LR
Sbjct: 62  LAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121

Query: 479 M-VCILNGLN 487
           M   +L  L 
Sbjct: 122 MEHLVLKVLT 131
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.98
2f2c_A 254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.98
1g3n_C 257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.97
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.97
1f5q_B 252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.97
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.97
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.97
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 99.96
2i53_A 258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.81
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 99.81
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 99.78
1zp2_A 235 RNA polymerase II holoenzyme cyclin-like subunit; 99.77
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.77
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.69
1c9b_A 207 General transcription factor IIB; protein-DNA comp 99.35
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.89
3k7a_M 345 Transcription initiation factor IIB; RNA polymeras 98.17
2pmi_B 293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.81
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 96.58
1ais_B200 TFB TFIIB, protein (transcription initiation facto 93.77
1c9b_A207 General transcription factor IIB; protein-DNA comp 85.99
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=99.98  E-value=3.4e-33  Score=269.51  Aligned_cols=130  Identities=41%  Similarity=0.708  Sum_probs=127.3

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCe
Q 011310          360 EVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEM  439 (489)
Q Consensus       360 ~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kL  439 (489)
                      .|.||++|||.||+++|.++.|.++||..|++|++.||.+++|||++||..|+|.++|+|+||+||||||+...+++.++
T Consensus         2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l   81 (260)
T 2cch_B            2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL   81 (260)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310          440 QLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF  489 (489)
Q Consensus       440 QLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD  489 (489)
                      ||+|+||||||||+||.++|.+.+|++++ +.|++++|++||+ ||++|+|+
T Consensus        82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~  133 (260)
T 2cch_B           82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFD  133 (260)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999 9999999999999 99999996
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 9e-42
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 1e-39
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-39
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 4e-39
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-36
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-22
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 4e-19
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-17
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (361), Expect = 9e-42
 Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 2/123 (1%)

Query: 367 EIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLD 426
           +I+ Y   ME +  P   YM  Q DIT  MR IL++WL+EV  ++ L  ETL+L V  +D
Sbjct: 1   DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 60

Query: 427 RYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISE-TYTRDHMLRM-VCILN 484
           R+LS + + + ++QLVG  ++LLASK+E+ + P V + + I++ TYT+  +LRM   +L 
Sbjct: 61  RFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 485 GLN 487
            L 
Sbjct: 121 VLT 123
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.98
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.74
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.71
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.67
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 95.62
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 94.64
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 89.26
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 85.4
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=261.41  Aligned_cols=133  Identities=26%  Similarity=0.487  Sum_probs=127.9

Q ss_pred             CcchhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhcc-ccC
Q 011310          357 NQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEV-KIK  435 (489)
Q Consensus       357 dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~-~V~  435 (489)
                      .|..+.+|++|||.+|.++|..+.+.++|+..|++|+++||.+++|||+++|..|+|+++|+|+||+||||||+.. .++
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~   82 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV   82 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccccc
Confidence            4677889999999999999999999999999999999999999999999999999999999999999999999865 589


Q ss_pred             CCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310          436 KNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF  489 (489)
Q Consensus       436 r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD  489 (489)
                      ++++||+|+||||||+|+||..+|.+.+|+++| +.|+.+||++||+ ||++|+|+
T Consensus        83 ~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~  138 (140)
T d1w98b2          83 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWR  138 (140)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999999999 9999999999999 99999996
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure