Citrus Sinensis ID: 011315

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
ccccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEccccccccccccccccccccccHHHHHccccEEEEEEcccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccEEEEEEccccEEEEEcccccccEEEEccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEEEEcccccEEEEEEEccccEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccEEEcccccccccHHHHHHHHHHcc
ccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccEccccccccccccccccccccccHHHHHccccEEEEEEccccccEEEccccccHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEccccccEEEEcccHHHcccccEEEcccccEEEEEEEEEccccEEcHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHcHcHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccHHHHHccccccccHHHHHHHHHHcc
myedpirqeaakktvpverleEKSLVSLAregnfkpskteQDHAFLLQLLFWFKqtfrwvnappcdgcsnetvgqgmgtplpseiQYGAARVELFRCKVcskitrfpryndplklvetkrgrcgewanCFTLYCRAFGYESRLILDFTDhvwtecfsqslgrwmhldpcegiydrpllyekgWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMErdlystddapvslpgrqsgdkewrisrseigsddncslscsscpvrvcIDEHVTTIYNAFSSVLSHfvennvpksgAIELLKILKGILgdlkkspyktrrvslnsvpnngqkiVHQLLPSIGHLLRVLSLKselntdgrvdivlagdpvktslslpVVFKALDDMIHdlnncdnfgkgsfclpllklnrihsgsvlasgeefpfgivtsafdgirpskweDLMAREVVG
myedpirqeaakktvpverleekslVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCskitrfpryndplklvetkrgrcgewANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAiskdgvfdvTKRYTRKwhevlsrrniateqtVSAVLAKMTRECRrsfasetlstledrdkcEREAMErdlystddapvslpgrqsgdkewRISRSeigsddncslsCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVslnsvpnngqKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVlagdpvktslSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNcslscsscPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIEllkilkgilgdlkkSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
******************************************HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTR************************************************************NCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKW**********
MYEDPIRQEAAKKTVPVERLE*********************HAFLLQLLFWFKQTFRWVNAPPCDGCS******************GAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECR********STLEDRDKC**************************************************VRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVS*****NN**KIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVV*
MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSN*******GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLY*************************************SCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
Q9FGY9 721 Peptide-N(4)-(N-acetyl-be yes no 0.983 0.665 0.644 1e-178
Q7F0R1447 Peptide-N(4)-(N-acetyl-be yes no 0.579 0.633 0.720 1e-126
Q503I8644 Peptide-N(4)-(N-acetyl-be yes no 0.592 0.448 0.445 6e-61
Q5ZJM3651 Peptide-N(4)-(N-acetyl-be yes no 0.592 0.443 0.430 2e-59
Q9JI78651 Peptide-N(4)-(N-acetyl-be yes no 0.588 0.440 0.433 1e-58
Q4R6F3654 Peptide-N(4)-(N-acetyl-be N/A no 0.584 0.435 0.433 1e-57
Q96IV0654 Peptide-N(4)-(N-acetyl-be yes no 0.584 0.435 0.433 2e-57
Q5XI55651 Peptide-N(4)-(N-acetyl-be yes no 0.579 0.434 0.436 7e-57
Q6CAX5356 Peptide-N(4)-(N-acetyl-be yes no 0.506 0.693 0.426 6e-53
Q4IR87451 Protein PNG1 OS=Gibberell yes no 0.584 0.631 0.377 4e-52
>sp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  625 bits (1613), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/481 (64%), Positives = 384/481 (79%), Gaps = 1/481 (0%)

Query: 1   MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWV 60
           MYEDP+RQ+AA+KTVP + LEEK+LVSLA+EGNF+PSK E+D+AFLLQLLFWFK++FRWV
Sbjct: 129 MYEDPVRQDAARKTVPKDELEEKALVSLAKEGNFEPSKEERDYAFLLQLLFWFKKSFRWV 188

Query: 61  NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR 120
           N PPCD C N+T+GQGMG PL SE+ YGA RVE++RC +C   TRFPRYNDPLKLVETK+
Sbjct: 189 NEPPCDFCGNKTIGQGMGNPLTSELAYGANRVEIYRCTMCPTTTRFPRYNDPLKLVETKK 248

Query: 121 GRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYE 180
           GRCGEWANCFTLYCR FGY+SRLI+DFTDHVWTEC+S SL RW+HLDPCEG+YD+P+LYE
Sbjct: 249 GRCGEWANCFTLYCRTFGYDSRLIMDFTDHVWTECYSHSLKRWIHLDPCEGVYDKPMLYE 308

Query: 181 KGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFA 240
           KGWNKKLNYVIAISKDGV DVTKRYT+KWHEVLSRR + TE ++   L  +TRE RRS  
Sbjct: 309 KGWNKKLNYVIAISKDGVCDVTKRYTKKWHEVLSRRTLTTESSLQDGLRTLTRERRRSLM 368

Query: 241 SETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCS 300
            E+LS LE RD+ E+E +ER+L+S D+A VSLPGRQSGD+EWRI RSE GSD+N S+S S
Sbjct: 369 FESLSKLELRDRNEQEELERNLHSADNASVSLPGRQSGDREWRIMRSEFGSDENSSVSSS 428

Query: 301 SCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRV 360
           SCPVR C+D+HVT IY++F  +L+ FVE+ +P +   E+LK++K +L DLK +PYKTR+ 
Sbjct: 429 SCPVRKCVDDHVTNIYDSFLPILTQFVEDGLPVARTNEVLKMIKQVLVDLKNAPYKTRKA 488

Query: 361 SLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGR-VDIVLAGDPVKTSLSLPVVFK 419
            L    +N      Q LP++G LL  LSLKSE +T+G+ V I + G   KT+++LPV   
Sbjct: 489 RLTLDSDNSSSFPEQFLPALGDLLLALSLKSERDTNGKSVTISVDGKLTKTAIALPVALD 548

Query: 420 ALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWE 479
           AL +++ DL+   N  K S   PL+K NR+ SGSVLASGEE P GI T+AFDGI+ SKWE
Sbjct: 549 ALRELVADLSKYQNLNKDSLSFPLVKQNRVCSGSVLASGEELPSGIATAAFDGIQESKWE 608

Query: 480 D 480
           +
Sbjct: 609 E 609
Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulun that are exported in the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2
>sp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Oryza sativa subsp. japonica GN=PNG1 PE=2 SV=1 Back     alignment and function description
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Danio rerio GN=ngly1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Gallus gallus GN=NGLY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JI78|NGLY1_MOUSE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus GN=Ngly1 PE=1 SV=2 Back     alignment and function description
>sp|Q4R6F3|NGLY1_MACFA Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Macaca fascicularis GN=NGLY1 PE=2 SV=1 Back     alignment and function description
>sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens GN=NGLY1 PE=1 SV=1 Back     alignment and function description
>sp|Q5XI55|NGLY1_RAT Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2 Back     alignment and function description
>sp|Q6CAX5|PNG1_YARLI Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNG1 PE=3 SV=1 Back     alignment and function description
>sp|Q4IR87|PNG1_GIBZE Protein PNG1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNG1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
225451303 726 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.983 0.661 0.727 0.0
255542316 719 peptide n-glycanase, putative [Ricinus c 0.967 0.656 0.712 0.0
356505935 720 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.973 0.659 0.7 0.0
356573070 715 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.973 0.664 0.7 0.0
357512279 717 Peptide-N(4)-(N-acetyl-beta-glucosaminyl 0.973 0.662 0.679 0.0
449442921 611 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.983 0.785 0.647 0.0
449482972 611 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.983 0.785 0.645 0.0
350539878 725 putative peptide:N-glycanase [Solanum ly 0.983 0.662 0.658 0.0
297795715 721 hypothetical protein ARALYDRAFT_495017 [ 0.983 0.665 0.659 0.0
15240508 721 peptide-N(4)-(N-acetyl-beta-glucosaminyl 0.983 0.665 0.644 1e-176
>gi|225451303|ref|XP_002278422.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Vitis vinifera] gi|298204879|emb|CBI34186.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/480 (72%), Positives = 404/480 (84%)

Query: 1   MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWV 60
           MYEDP RQEAA+KTVPV  LEEK+LVSLA+EGNFKPSKTEQDHAFLLQLLFWFKQ+FRWV
Sbjct: 136 MYEDPKRQEAARKTVPVLELEEKALVSLAKEGNFKPSKTEQDHAFLLQLLFWFKQSFRWV 195

Query: 61  NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR 120
           +APPCD C N+T+  GMG+PLPSE  +G +RVEL+RC  CS ITRFPRYNDPLKLVET++
Sbjct: 196 DAPPCDSCGNQTISYGMGSPLPSEALFGGSRVELYRCNSCSTITRFPRYNDPLKLVETRK 255

Query: 121 GRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYE 180
           GRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFS   GRWMHLDPCE I+D PLLYE
Sbjct: 256 GRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSHCFGRWMHLDPCEAIFDNPLLYE 315

Query: 181 KGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFA 240
           KGWNKKLNY+IAI+KDGV+DVTKRYTRKWHEVLSRRNI TE  +SAVLA +T++CR+ F 
Sbjct: 316 KGWNKKLNYIIAIAKDGVYDVTKRYTRKWHEVLSRRNITTEAELSAVLAIITKDCRKGFT 375

Query: 241 SETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCS 300
           S+ LSTLE+RD+ E EA+ER+ +S D A   LPGRQSGDKEWRISRSE GSDDN SLS S
Sbjct: 376 SQVLSTLEERDRNEMEAIEREYHSKDYASTLLPGRQSGDKEWRISRSEFGSDDNSSLSSS 435

Query: 301 SCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRV 360
           SCPVR+CIDEHVT +YNA   VL  F+ N++ KS A+E+LK+ K I+ +L+ SP++ R+ 
Sbjct: 436 SCPVRMCIDEHVTRVYNALYPVLYSFILNSLSKSRAVEILKMFKRIVVELRDSPFRMRKT 495

Query: 361 SLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKA 420
           S+ S  ++G+  V Q+LPS G LL  LSLKSEL TDGRV+I LAGDPVKTSL+LPVV   
Sbjct: 496 SIKSDSSSGKFFVDQMLPSFGELLEALSLKSELGTDGRVEICLAGDPVKTSLALPVVLDG 555

Query: 421 LDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWED 480
           LDD IH+ +NC+NFGK S  LPL+KLNRI SG VLASGEE PFGI TSAFDGI+ SKWE+
Sbjct: 556 LDDAIHNFSNCENFGKDSLSLPLVKLNRICSGFVLASGEELPFGIATSAFDGIQKSKWEE 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542316|ref|XP_002512221.1| peptide n-glycanase, putative [Ricinus communis] gi|223548182|gb|EEF49673.1| peptide n-glycanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356505935|ref|XP_003521744.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Glycine max] Back     alignment and taxonomy information
>gi|356573070|ref|XP_003554688.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357512279|ref|XP_003626428.1| Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Medicago truncatula] gi|355501443|gb|AES82646.1| Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449442921|ref|XP_004139229.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482972|ref|XP_004156458.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|350539878|ref|NP_001234560.1| putative peptide:N-glycanase [Solanum lycopersicum] gi|303306032|gb|ADM13644.1| putative peptide:N-glycanase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|297795715|ref|XP_002865742.1| hypothetical protein ARALYDRAFT_495017 [Arabidopsis lyrata subsp. lyrata] gi|297311577|gb|EFH42001.1| hypothetical protein ARALYDRAFT_495017 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240508|ref|NP_199768.1| peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Arabidopsis thaliana] gi|75170522|sp|Q9FGY9.1|PNG1_ARATH RecName: Full=Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; AltName: Full=Peptide:N-glycanase; Short=AtPNG1 gi|10177623|dbj|BAB10770.1| unnamed protein product [Arabidopsis thaliana] gi|22655232|gb|AAM98206.1| unknown protein [Arabidopsis thaliana] gi|28059472|gb|AAO30061.1| unknown protein [Arabidopsis thaliana] gi|110736284|dbj|BAF00112.1| hypothetical protein [Arabidopsis thaliana] gi|148589112|emb|CAN87017.1| transglutaminase [Arabidopsis thaliana] gi|332008448|gb|AED95831.1| peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
TAIR|locus:2157869 721 PNG1 "peptide-N-glycanase 1" [ 0.983 0.665 0.619 3.3e-166
UNIPROTKB|E1BKB2657 NGLY1 "Uncharacterized protein 0.674 0.500 0.401 6.2e-62
UNIPROTKB|F1NWD4651 NGLY1 "Peptide-N(4)-(N-acetyl- 0.592 0.443 0.430 1.6e-61
UNIPROTKB|Q5ZJM3651 NGLY1 "Peptide-N(4)-(N-acetyl- 0.592 0.443 0.430 2.7e-61
MGI|MGI:1913276651 Ngly1 "N-glycanase 1" [Mus mus 0.588 0.440 0.436 1.2e-60
UNIPROTKB|E2R815655 NGLY1 "Uncharacterized protein 0.588 0.438 0.440 1.9e-60
UNIPROTKB|F1PRF1578 NGLY1 "Uncharacterized protein 0.588 0.496 0.440 1.9e-60
RGD|1308518651 Ngly1 "N-glycanase 1" [Rattus 0.581 0.436 0.448 3.1e-60
UNIPROTKB|Q4R6F3654 NGLY1 "Peptide-N(4)-(N-acetyl- 0.584 0.435 0.437 5e-60
ZFIN|ZDB-GENE-050522-535644 ngly1 "N-glycanase 1" [Danio r 0.592 0.448 0.445 5e-60
TAIR|locus:2157869 PNG1 "peptide-N-glycanase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1617 (574.3 bits), Expect = 3.3e-166, P = 3.3e-166
 Identities = 298/481 (61%), Positives = 367/481 (76%)

Query:     1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWV 60
             MYEDP+RQ+AA+KTVP + LEEK+LVSLA+EGNF+PSK E+D+AFLLQLLFWFK++FRWV
Sbjct:   129 MYEDPVRQDAARKTVPKDELEEKALVSLAKEGNFEPSKEERDYAFLLQLLFWFKKSFRWV 188

Query:    61 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR 120
             N PPCD C N+T+GQGMG PL SE+ YGA RVE++RC +C   TRFPRYNDPLKLVETK+
Sbjct:   189 NEPPCDFCGNKTIGQGMGNPLTSELAYGANRVEIYRCTMCPTTTRFPRYNDPLKLVETKK 248

Query:   121 GRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYE 180
             GRCGEWANCFTLYCR FGY+SRLI+DFTDHVWTEC+S SL RW+HLDPCEG+YD+P+LYE
Sbjct:   249 GRCGEWANCFTLYCRTFGYDSRLIMDFTDHVWTECYSHSLKRWIHLDPCEGVYDKPMLYE 308

Query:   181 KGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFA 240
             KGWNKKLNYVIAISKDGV DVTKRYT+KWHEVLSRR + TE ++   L  +TRE RRS  
Sbjct:   309 KGWNKKLNYVIAISKDGVCDVTKRYTKKWHEVLSRRTLTTESSLQDGLRTLTRERRRSLM 368

Query:   241 SETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNXXXXXX 300
              E+LS LE RD+ E+E +ER+L+S D+A VSLPGRQSGD+EWRI RSE GSD+N      
Sbjct:   369 FESLSKLELRDRNEQEELERNLHSADNASVSLPGRQSGDREWRIMRSEFGSDENSSVSSS 428

Query:   301 XXPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIEXXXXXXXXXXXXXXSPYKTRRV 360
               PVR C+D+HVT IY++F  +L+ FVE+ +P +   E              +PYKTR+ 
Sbjct:   429 SCPVRKCVDDHVTNIYDSFLPILTQFVEDGLPVARTNEVLKMIKQVLVDLKNAPYKTRKA 488

Query:   361 SLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGR-VDIVLAGDPVKTSLSLPVVFK 419
              L    +N      Q LP++G LL  LSLKSE +T+G+ V I + G   KT+++LPV   
Sbjct:   489 RLTLDSDNSSSFPEQFLPALGDLLLALSLKSERDTNGKSVTISVDGKLTKTAIALPVALD 548

Query:   420 ALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWE 479
             AL +++ DL+   N  K S   PL+K NR+ SGSVLASGEE P GI T+AFDGI+ SKWE
Sbjct:   549 ALRELVADLSKYQNLNKDSLSFPLVKQNRVCSGSVLASGEELPSGIATAAFDGIQESKWE 608

Query:   480 D 480
             +
Sbjct:   609 E 609
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005634 "nucleus" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0000224 "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity" evidence=IGI;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0010188 "response to microbial phytotoxin" evidence=IEP
GO:0010193 "response to ozone" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
UNIPROTKB|E1BKB2 NGLY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWD4 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJM3 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1913276 Ngly1 "N-glycanase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R815 NGLY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRF1 NGLY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308518 Ngly1 "N-glycanase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6F3 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-535 ngly1 "N-glycanase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGY9PNG1_ARATH3, ., 5, ., 1, ., 5, 20.64440.98360.6657yesno
Q7F0R1PNG1_ORYSJ3, ., 5, ., 1, ., 5, 20.72080.57990.6331yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.520.914
3rd Layer3.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
pfam01841108 pfam01841, Transglut_core, Transglutaminase-like s 3e-16
smart0046068 smart00460, TGc, Transglutaminase/protease-like ho 1e-10
pfam03835142 pfam03835, Rad4, Rad4 transglutaminase-like domain 1e-06
TIGR00605713 TIGR00605, rad4, DNA repair protein rad4 3e-04
COG1305319 COG1305, COG1305, Transglutaminase-like enzymes, p 0.003
>gnl|CDD|216735 pfam01841, Transglut_core, Transglutaminase-like superfamily Back     alignment and domain information 
 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 89  AARVELFRCK--VCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILD 146
           A  +  +  K        R P  +D  +++ T +G CG++A+ F    RA G  +R +  
Sbjct: 18  AKAIYDYVRKNITYDAPGRSPGDDDAEEVLFTGKGVCGDFASLFVALLRALGIPARYVTG 77

Query: 147 FTD----------HVWTECFSQSLGRWMHLDP 168
           +            H W E +    G W+ +DP
Sbjct: 78  YLRGPDTVRNGDAHAWVEVYLPGYG-WVPVDP 108

This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. Length = 108
>gnl|CDD|214673 smart00460, TGc, Transglutaminase/protease-like homologues Back     alignment and domain information
>gnl|CDD|217753 pfam03835, Rad4, Rad4 transglutaminase-like domain Back     alignment and domain information
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4 Back     alignment and domain information
>gnl|CDD|224224 COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
KOG0909500 consensus Peptide:N-glycanase [Posttranslational m 100.0
PF03835145 Rad4: Rad4 transglutaminase-like domain; InterPro: 99.87
TIGR00605713 rad4 DNA repair protein rad4. This family is based 99.79
PF01841113 Transglut_core: Transglutaminase-like superfamily; 99.49
smart0046068 TGc Transglutaminase/protease-like homologues. Tra 99.4
COG1305319 Transglutaminase-like enzymes, putative cysteine p 99.26
KOG2179669 consensus Nucleotide excision repair complex XPC-H 99.07
COG5535650 RAD4 DNA repair protein RAD4 [DNA replication, rec 98.11
PF04473153 DUF553: Transglutaminase-like domain; InterPro: IP 97.13
COG5279521 CYK3 Uncharacterized protein involved in cytokines 94.26
PF13369152 Transglut_core2: Transglutaminase-like superfamily 93.33
PF14381204 EDR1: Ethylene-responsive protein kinase Le-CTR1 92.03
PF14402313 7TM_transglut: 7 transmembrane helices usually fus 90.17
PF13471117 Transglut_core3: Transglutaminase-like superfamily 88.88
PF1276046 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int 87.57
COG1571421 Predicted DNA-binding protein containing a Zn-ribb 87.16
COG2816279 NPY1 NTP pyrophosphohydrolases containing a Zn-fin 82.74
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-113  Score=881.39  Aligned_cols=396  Identities=43%  Similarity=0.748  Sum_probs=365.6

Q ss_pred             CCCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHhhcc-CeeecCCCCCCCCCCc-cccCCC
Q 011315            1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNET-VGQGMG   78 (488)
Q Consensus         1 ~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t-~~~g~~   78 (488)
                      +||||.||++||++||||+|+++|++.+++   +.+++.+.|..+..+||+|||++ |+|||+|||+.||++| ...|.+
T Consensus       102 vYEDP~lq~~Als~iPvdEL~~kA~ekla~---~eg~ki~kdy~i~leLL~WFKq~FF~WvN~PpC~~CG~et~~~l~~~  178 (500)
T KOG0909|consen  102 VYEDPVLQAKALSTIPVDELKEKASEKLAK---AEGEKIYKDYLIKLELLNWFKQDFFKWVNNPPCNKCGGETSSGLGNQ  178 (500)
T ss_pred             eecCHHHHHHHHhcCCHHHHHHHHHHhhcc---cchhhhhcchHHHHHHHHHHHHhhheecCCCCcccccccccccccCC
Confidence            699999999999999999999999998876   23445565555557999999998 7999999999999999 567888


Q ss_pred             CCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeCCCeEEEEEEeC
Q 011315           79 TPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQ  158 (488)
Q Consensus        79 ~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~~dHvW~EVy~~  158 (488)
                      +|+.+|.++||++||+|+|+.||+.+||||||||.+||+||+|||||||||||++|||+|++||||||.+||||+|||++
T Consensus       179 ~p~eeE~~~Ga~rVEiy~C~~C~~~~RFPRYNdp~kLLeTRkGRCGEWANCFTllcralg~daR~i~d~tDHVWtEvYS~  258 (500)
T KOG0909|consen  179 PPNEEEKKFGAGRVEIYKCNRCGTETRFPRYNDPIKLLETRKGRCGEWANCFTLLCRALGLDARYIWDRTDHVWTEVYSN  258 (500)
T ss_pred             CCchhHhhcCCceEEEEEecCCCCcccCcccCCHHHHHhhccCccchHHHHHHHHHHHcCCcceEEeecCcchhHHhhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHHHcc
Q 011315          159 SLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRS  238 (488)
Q Consensus       159 ~~~rWIhVDP~e~~iD~Pllye~gwgKklsYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~r~~  238 (488)
                      .++|||||||||+++|+|+||+.||||+|+|||||++|||+||||||+.+|.+++.+|+.|.|+.|+.+|+.||+++|.+
T Consensus       259 ~qqRW~HvDpcE~v~D~PllYe~GW~KklsY~iafgkD~VvDVT~RYi~~h~e~~~~R~~~~E~~l~~~l~~in~~rr~~  338 (500)
T KOG0909|consen  259 AQQRWVHVDPCENVFDKPLLYEIGWGKKLSYCIAFGKDGVVDVTWRYILDHKENLLPRDLCKESVLQQTLQFINKRRRYS  338 (500)
T ss_pred             hhheeEeecccccccccceeeecccCcccceEEEeccCceEeeehhhhccchhhccchhhcchHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHhhhhhhccHHHHHHHHhhccCCCCCCCCCCCCccccHHHHHhhcCCCCCCCCCcCCCCCCceeecccceeeEeec
Q 011315          239 FASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNA  318 (488)
Q Consensus       239 ls~ee~~~Le~Rd~~E~~EL~~~~~~~~~~~~~l~GRqSGs~eWr~aRGE~G~~~~~s~~~s~cp~~~c~d~hv~~iY~a  318 (488)
                      +++++++.|++||.+|+.||.+...+.+++..+||||||||.+||.+|||+|.                   |++ ||+.
T Consensus       339 lt~~r~~~L~~rd~~e~~El~~~~~~~~~~~~~L~GR~SGs~eWr~~RGE~G~-------------------h~~-i~D~  398 (500)
T KOG0909|consen  339 LTDDRKKELAQRDEREQIELIRGKTPETPTKSSLPGRQSGSVEWRAQRGEDGK-------------------HNT-IYDS  398 (500)
T ss_pred             cChHHHHHHHhhhHHHHHHHHhccccCCCCCCCCCCcccccHHHHHhhccccc-------------------cce-ehhh
Confidence            99999999999999999999999999888999999999999999999999998                   887 8877


Q ss_pred             cchhhhccccCCCchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh-hccHHHHHHhhccccccCCCC
Q 011315          319 FSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL-LPSIGHLLRVLSLKSELNTDG  397 (488)
Q Consensus       319 ~~~~ls~~~~~~~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~-lps~~~ll~~lslk~~~~~~g  397 (488)
                      .-       +   |.++||++..|||+++.||||+ |++|.+--+-..++     +.| +-+.+.++.++||+.++.|.|
T Consensus       399 ~~-------~---~~~~~~e~~~i~r~ve~Dw~mt-ylaR~~~~s~~~is-----w~fd~~~~~~~~~~~~l~~~~qtf~  462 (500)
T KOG0909|consen  399 YT-------E---WSAQAFELENIFRKVETDWKMT-YLARLEGDSPGNIS-----WHFDFKLKGLKVKSESLMAEIQTFG  462 (500)
T ss_pred             hh-------h---HHHHHHHHHHHHHHHHhhHHHH-HHHHhcCCCCcccc-----chhhhhhcccHHHHHHHHhhhhhcC
Confidence            65       1   8999999999999999999999 99999865555544     444 338899999999999999998


Q ss_pred             CeEEEecCCCccccchhhHhHHHHHHHHHhcccCcCCCCCcccccccccccccccceeccccccccceeeccccCCCccc
Q 011315          398 RVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSK  477 (488)
Q Consensus       398 ~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~e~~p~g~~~~af~g~~~~k  477 (488)
                      +=             ++||.+||.+.. .++++-.++.                             |+|.+|+|+.-.|
T Consensus       463 ~g-------------~~~v~~D~s~~s-ad~~~a~~l~-----------------------------i~t~~~~g~~~~~  499 (500)
T KOG0909|consen  463 KG-------------CMRVTIDASALS-ADPSNATILK-----------------------------IRTELFSGKGDVK  499 (500)
T ss_pred             CC-------------ceEeeechhccc-CCcccCceee-----------------------------eehhhcCCccccC
Confidence            74             888999999887 7777744331                             9999999999999


Q ss_pred             c
Q 011315          478 W  478 (488)
Q Consensus       478 w  478 (488)
                      |
T Consensus       500 w  500 (500)
T KOG0909|consen  500 W  500 (500)
T ss_pred             C
Confidence            8

>PF03835 Rad4: Rad4 transglutaminase-like domain; InterPro: IPR018325 RAD4/Xp-C proteins contain an ancient transglutaminase fold that is also found in peptide-N-glycanases (PNGases), which remove glycans from glycoproteins during their degradation Back     alignment and domain information
>TIGR00605 rad4 DNA repair protein rad4 Back     alignment and domain information
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i Back     alignment and domain information
>smart00460 TGc Transglutaminase/protease-like homologues Back     alignment and domain information
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2179 consensus Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11 [Replication, recombination and repair] Back     alignment and domain information
>COG5535 RAD4 DNA repair protein RAD4 [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252 Back     alignment and domain information
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13369 Transglut_core2: Transglutaminase-like superfamily Back     alignment and domain information
>PF14381 EDR1: Ethylene-responsive protein kinase Le-CTR1 Back     alignment and domain information
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase Back     alignment and domain information
>PF13471 Transglut_core3: Transglutaminase-like superfamily Back     alignment and domain information
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc Back     alignment and domain information
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] Back     alignment and domain information
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
2f4m_A295 The Mouse Pngase-Hr23 Complex Reveals A Complete Re 5e-56
1x3z_A335 Structure Of A Peptide:n-Glycanase-Rad23 Complex Le 2e-46
1x3w_A335 Structure Of A Peptide:n-Glycanase-Rad23 Complex Le 5e-46
3esw_A355 Complex Of Yeast Pngase With Glcnac2-Iac Length = 3 3e-45
>pdb|2F4M|A Chain A, The Mouse Pngase-Hr23 Complex Reveals A Complete Remodulation Of The Protein-Protein Interface Compared To Its Yeast Orthologs Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (547), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 144/237 (60%), Gaps = 3/237 (1%)
Query: 1   MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLL-FWFKQTF-R 58
           +YE+P+ QE A   +PV  L+ K+   L R           D  FLL  L  WFK+ F R
Sbjct: 18  LYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFR 77
Query: 59  WVNAPPCDGCSNETVGQGMGT-PLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVE 117
           WVN   C  C  ET  +     P   E+++GA  VE   C  C    RFPRYN+P KL+E
Sbjct: 78  WVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLE 137
Query: 118 TKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPL 177
           T+ GRCGEWANCFTL CRA G+E+R + D+TDHVWTE +S S  RW+H D CE + D+PL
Sbjct: 138 TRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPL 197
Query: 178 LYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRE 234
           LYE GW KKL+Y+IA SKD V DVT RY+ K  EV+SRR    E+ +   +  + ++
Sbjct: 198 LYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQ 254
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex Length = 335 Back     alignment and structure
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex Length = 335 Back     alignment and structure
>pdb|3ESW|A Chain A, Complex Of Yeast Pngase With Glcnac2-Iac Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
1x3z_A335 Peptide: N-glycanase; hydrolase-hydrolase inhibito 1e-100
2f4m_A295 Peptide N-glycanase; glycoproteins, ubiquitin-depe 2e-96
2qsf_A533 RAD4, DNA repair protein RAD4; alpha-beta structur 5e-29
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Length = 335 Back     alignment and structure
 Score =  304 bits (780), Expect = e-100
 Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 11/283 (3%)

Query: 1   MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTF-RW 59
           +Y++P       +T+ ++ + +      A++G+ +      D   + +LL +FKQ F +W
Sbjct: 58  VYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTD-YLVKELLRYFKQDFFKW 116

Query: 60  VNAPPCDGCSNET----VGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKL 115
            N P C+ C   T       G   P   E ++    VE+++C  C  ITRFPRYNDP+KL
Sbjct: 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKL 176

Query: 116 VETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDR 175
           +ET++GRCGEW N FTL  ++FG + R + +  DHVW E FS  L RW+H+D CE  +D+
Sbjct: 177 LETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQ 236

Query: 176 PLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTREC 235
           P +Y   WNKK++Y IA  KDGV DV+KRY  +       R+   E+ +  +   +T+  
Sbjct: 237 PYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQNE---LPRDQIKEEDLKFLCQFITKRL 293

Query: 236 RRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSG 278
           R S   + +  L  RD+ E+  + R    T +         S 
Sbjct: 294 RYSLNDDEIYQLACRDEQEQIELIR--GKTQETKSESVSAASK 334
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Length = 295 Back     alignment and structure
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A* Length = 533 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
1x3z_A335 Peptide: N-glycanase; hydrolase-hydrolase inhibito 100.0
2f4m_A295 Peptide N-glycanase; glycoproteins, ubiquitin-depe 100.0
2qsf_A533 RAD4, DNA repair protein RAD4; alpha-beta structur 100.0
3isr_A293 Transglutaminase-like enzymes, putative cysteine; 99.46
2g9g_A221 Pngase, peptide N-glycanase; beta-sandwich, hydrol 99.43
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 98.84
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 98.67
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 98.66
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 98.65
3kd4_A506 Putative protease; structural genomics, joint cent 98.31
2i74_A189 Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A 97.22
4fgq_A193 Periplasmic protein; DUF920, protease, calcium bin 94.26
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-82  Score=638.73  Aligned_cols=258  Identities=36%  Similarity=0.742  Sum_probs=242.7

Q ss_pred             CCCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHhhcc-CeeecCCCCCCCCCCc---cc-c
Q 011315            1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNET---VG-Q   75 (488)
Q Consensus         1 ~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t---~~-~   75 (488)
                      +||||.+|++||++||||+|+++|++...+.++.++++. ++|.+|++||+|||++ |+|||+|||+.||+++   .. +
T Consensus        58 ~Yed~~~~~~al~~iP~d~l~~~a~~~~~~~~~~~~~~~-~~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~  136 (335)
T 1x3z_A           58 VYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENI-YTDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPL  136 (335)
T ss_dssp             HTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCTH-HHHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEE
T ss_pred             HhCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHhcCCEeeCCCCccccCCCcccccccc
Confidence            499999999999999999999999976666665556544 5677999999999998 8999999999999985   55 5


Q ss_pred             CCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeCCCeEEEEE
Q 011315           76 GMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTEC  155 (488)
Q Consensus        76 g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~~dHvW~EV  155 (488)
                      |+.+|+++|+.+||++||+|+|+.||+.+||||||+|.+||+||+|+|+|||+||+++|||+|++||+|+|+++|+|+||
T Consensus       137 g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi~aR~V~~~~~H~W~EV  216 (335)
T 1x3z_A          137 GSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEY  216 (335)
T ss_dssp             EEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEEETTTEEEEEE
T ss_pred             CCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCCCeEEEecCCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHH
Q 011315          156 FSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTREC  235 (488)
Q Consensus       156 y~~~~~rWIhVDP~e~~iD~Pllye~gwgKklsYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~  235 (488)
                      |++..++|||||||++++|+|++|+.||+|+|+|||||++||++|||+||+.+ + . .+|.+|+|+||..+|..||.++
T Consensus       217 ~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DVT~RY~~~-~-~-lrR~rv~e~wl~~~L~~l~~~~  293 (335)
T 1x3z_A          217 FSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQ-N-E-LPRDQIKEEDLKFLCQFITKRL  293 (335)
T ss_dssp             EETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSS-S-B-CCCCSSCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEECHHHhCcC-C-c-cccccCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 4 4 3888999999999999999999


Q ss_pred             HccCCHHHhhhhhhccHHHHHHHHhhc
Q 011315          236 RRSFASETLSTLEDRDKCEREAMERDL  262 (488)
Q Consensus       236 r~~ls~ee~~~Le~Rd~~E~~EL~~~~  262 (488)
                      |.+++++++..|++||+.|..||....
T Consensus       294 r~~~s~~e~~~L~~Rd~~E~~EL~~~~  320 (335)
T 1x3z_A          294 RYSLNDDEIYQLACRDEQEQIELIRGK  320 (335)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHhHHHHHHHhhccC
Confidence            999999999999999999999998543
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Back     alignment and structure
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A* Back     alignment and structure
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii} Back     alignment and structure
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29 Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A Back     alignment and structure
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 488
d1x3za1320 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Bak 1e-104
d2f4ma1287 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {M 2e-98
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 320 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Transglutaminase core
domain: Peptide:N-glycanase 1, PNG1
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  311 bits (799), Expect = e-104
 Identities = 95/265 (35%), Positives = 147/265 (55%), Gaps = 9/265 (3%)

Query: 1   MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRW 59
           +Y++P       +T+ ++ + +      A++G+ +      D   + +LL +FKQ  F+W
Sbjct: 58  VYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTD-YLVKELLRYFKQDFFKW 116

Query: 60  VNAPPCDGCSNET----VGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKL 115
            N P C+ C   T       G   P   E ++    VE+++C  C  ITRFPRYNDP+KL
Sbjct: 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKL 176

Query: 116 VETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDR 175
           +ET++GRCGEW N FTL  ++FG + R + +  DHVW E FS  L RW+H+D CE  +D+
Sbjct: 177 LETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQ 236

Query: 176 PLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTREC 235
           P +Y   WNKK++Y IA  KDGV DV+KRY  +       R+   E+ +  +   +T+  
Sbjct: 237 PYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQNE---LPRDQIKEEDLKFLCQFITKRL 293

Query: 236 RRSFASETLSTLEDRDKCEREAMER 260
           R S   + +  L  RD+ E+  + R
Sbjct: 294 RYSLNDDEIYQLACRDEQEQIELIR 318
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1x3za1320 Peptide:N-glycanase 1, PNG1 {Baker's yeast(Sacchar 100.0
d2f4ma1287 Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) 100.0
d2g9ga1108 Peptide:N-glycanase, PNGase, C-terminal domain {Mo 99.21
d2q3za4316 Transglutaminase catalytic domain {Human (Homo sap 98.53
d1ex0a4320 Transglutaminase catalytic domain {Human (Homo sap 97.76
d1g0da4321 Transglutaminase catalytic domain {Red sea bream ( 97.75
d1vjja4321 Transglutaminase catalytic domain {Human (Homo sap 97.71
d2i74a1180 Peptide:N-glycanase, PNGase, C-terminal domain {Mo 96.94
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Transglutaminase core
domain: Peptide:N-glycanase 1, PNG1
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-88  Score=679.35  Aligned_cols=256  Identities=37%  Similarity=0.748  Sum_probs=246.3

Q ss_pred             CCCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHhhcc-CeeecCCCCCCCCCCcc----cc
Q 011315            1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNETV----GQ   75 (488)
Q Consensus         1 ~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t~----~~   75 (488)
                      +||||.+|++||++|||++|+++|++..+++++..+++.++| .+|++||+|||++ |+|||+|||+.||++|.    .+
T Consensus        58 ~ye~~~~~~~al~~ipl~~i~~~~~~~~~~~~~~~~~~~y~d-~~l~eLl~wFk~~fF~wvn~p~C~~Cg~~t~~~~~~~  136 (320)
T d1x3za1          58 VYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTD-YLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPL  136 (320)
T ss_dssp             HTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCTHHHH-HHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEE
T ss_pred             HhcCHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCccccHHH-HHHHHHHHHHHhhhceecCCCCCCcCCCCcccccccc
Confidence            599999999999999999999999998888888888888775 6999999999998 79999999999999874    56


Q ss_pred             CCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeCCCeEEEEE
Q 011315           76 GMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTEC  155 (488)
Q Consensus        76 g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~~dHvW~EV  155 (488)
                      |+++||++|..+||++||+|+|+.||+.+||||||||.+||+||+||||||||||+++|||+|++||||||++||+|+||
T Consensus       137 g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~LL~tR~GRcgEwan~F~~~~ra~g~~aR~V~~~~DhvW~EV  216 (320)
T d1x3za1         137 GSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEY  216 (320)
T ss_dssp             EEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEEETTTEEEEEE
T ss_pred             cCCCCCchhhcCCCCeEEEEECCCCCCccccCCcCCHHHHHhhcCcchHHHHHHHHHHHHHcCCceEEEEECCCceEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHH
Q 011315          156 FSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTREC  235 (488)
Q Consensus       156 y~~~~~rWIhVDP~e~~iD~Pllye~gwgKklsYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~  235 (488)
                      |++.++||||||||++++|+|++|+.||+|+|+|||||+.||++|||+||+.++.   .||++|+|+||..+|+.+++++
T Consensus       217 ys~~~kRWIhvDpce~~id~P~lye~gw~k~msYVIAf~~dgv~DVT~RY~~k~~---~rR~rv~E~wl~~~L~~l~~~~  293 (320)
T d1x3za1         217 FSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQNE---LPRDQIKEEDLKFLCQFITKRL  293 (320)
T ss_dssp             EETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSSSB---CCCCSSCHHHHHHHHHHHHHHH
T ss_pred             eecccCeEEEEcCCCCccCCcceeccCCCCceEEEEEecCCcceechhhhccccc---CccccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999863   5899999999999999999999


Q ss_pred             HccCCHHHhhhhhhccHHHHHHHHh
Q 011315          236 RRSFASETLSTLEDRDKCEREAMER  260 (488)
Q Consensus       236 r~~ls~ee~~~Le~Rd~~E~~EL~~  260 (488)
                      |.+++++++..|+.||..|..||.+
T Consensus       294 r~~~s~~e~~~L~~RD~~E~~ELl~  318 (320)
T d1x3za1         294 RYSLNDDEIYQLACRDEQEQIELIR  318 (320)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCHHHHHHHHHhHHHHHHHhcc
Confidence            9999999999999999999999974
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g9ga1 b.18.1.29 (A:454-561) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure