Citrus Sinensis ID: 011334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTNSKSANLTLLSELKEETSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHccccccccccccEEEEEcHHHHHHcccEEEHHccccccHHHHHHHHccccccccEEEEcccccccEEEEEEccccccccccHHHHHHcHHHHHHHHcccccccEEEcccccccEEEEccHHHHHcccccccEEcccccEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mmsgnaftipsslggfvhqeqnpnpnpkpnqaaskkkrnlpgtpdpdaevialspktlmATNRFICEICNkgfqrdqnlqlhrrghnlpwklrqRTNKDVIkkkvyicpektcvhhepsralgdltgikkhfsrkhgekkwkcekcskkyavqsdwkahsktcgtreykcdcgtlfsrkdsfiTHRAFCDALAEESTRLASSVVAAASnlnfrtdhtvnlpqgvpqdvagsisqfgsgfaGLAEMVQIGSvsnnlfgssssnmgnfghqfqgfhksmagattnsksANLTLLSELKEetsclynsdsthenkqlkpvavgpMSATALLQKAAQmgstrsnnnpitsifgngsgfnnvmsssssssnatsynnntslhntnlsgsavtlatsdgvmgssnlrsmntTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDflgmtsgnqvqsvrpflpQELANFasnigsvspiglsqftsnn
Flexible Loop (DISEMBL)
MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLqlhrrghnlpwklrqrtnkdviKKKVYIcpektcvhhepsralgdltgikkhfsrkhgekkwkcekcskkyavqsdwkahsktcgtreykCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTNSKSANLTLLSELKEETSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDFLGMTSGNQVQSVRPFLPQELANFASnigsvspiglsqftsnn
Low Complexity Region (SEG)
MMSGNAFTIPSSLGGFVHQEqnpnpnpkpnqaaskkkRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGekkwkcekcskkYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLassvvaaasNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIgsvsnnlfgssssnmgnfgHQFQGFHKSMAGATTNSKSANltllselkeetsclYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFgngsgfnnvmsssssssnatsynnntslhntnlsGSAVTLATSDGVMGSSNLRSMNttttaaavatSDTLNQLMMMqtrgdqqneqqqqvqLKLTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN
Disordered region (IsUnstruct)
*************************************************VIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIGSVSNNL**********************************************************************************************************************************************************************************************FL*************FL***LANF*******************
Disordered Region (DISOPRED)
*MSGNAFTIPS***************PKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQR*********VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALA****************************************************************************************************************************************KA*****************************************************************************************************************DFLGM***************************************
Disordered Region (DISEMBL)
MMSGNAFTIPSSLGGFVHQE*********************GTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKK*************EKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTNSKSANLTLLSELKEETSCLYNSDSTHENKQLKPVAVGPMSATALL*********RSNNNPITSIFGNGSGFNNV************YNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQT************QLKLTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN
Disordered Region (DISPRO)
****************************************PGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR*************************************************************************************************************************************AQMGS************GN*******************************************************************************************LTRDFLGMTSGNQVQSVRPFLPQELANFASNIG**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFAGLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTNSKSANLTLLSELKEETSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
Q700D2	503	Zinc finger protein JACKD	yes	no	0.909	0.882	0.505	1e-119
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.362	0.349	0.809	1e-92
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.422	0.442	0.689	4e-90
Q943I6	522	Zinc finger protein STOP1	no	no	0.450	0.421	0.298	7e-22
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.297	0.290	0.348	1e-21
Q2QX40	465	Zinc finger protein STAR3	no	no	0.284	0.298	0.333	2e-19
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.286	0.462	0.342	2e-16
O43313	823	ATM interactor OS=Homo sa	yes	no	0.311	0.184	0.299	8e-13
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.245	0.146	0.314	1e-11
Q8BXX2	756	Zinc finger and BTB domai	no	no	0.254	0.164	0.270	3e-07

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 265/524 (50%), Positives = 329/524 (62%), Gaps = 80/524 (15%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPN----------------PNPKPNQAASKKKRNLPGTP 44
           M+ G+ F+I SS+GGFVHQE + +                PN KPN +++KKKRN PGTP
Sbjct: 3   MIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTP 62

Query: 45  DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKK 104
           DPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VIKKK
Sbjct: 63  DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKK 122

Query: 105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCG 164
           VYICP KTCVHH+ SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAH+KTCG
Sbjct: 123 VYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCG 182

Query: 165 TREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLAS----SVVAAASNLNFRTDHTV-- 218
           TREYKCDCGTLFSRKDSFITHRAFCDAL EE  R++S    + V + +NLNF  +  V  
Sbjct: 183 TREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMN 242

Query: 219 --NLPQGVPQ------DVAGSISQFGSGFA---------GLAEMVQIGSVSNNLFGSSSS 261
             NLP G         D+  +ISQFG GF          GL+EMVQ+ S  N+    SSS
Sbjct: 243 NPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSS 302

Query: 262 NMGNFG---HQFQGFHKSMAGATTN----------SKSANLTLLSELKEETSCLYNSDST 308
           +        HQFQ     +   +TN          S+  + +L  +  +++S      S+
Sbjct: 303 SSLPDFSGHHQFQ-----IPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSS 357

Query: 309 HENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNAT 368
            ENKQ KP++  PMSATALLQKAAQMGSTRSN++   S F   +     M+SSS++++  
Sbjct: 358 SENKQNKPLS--PMSATALLQKAAQMGSTRSNSSTAPSFFAGPT-----MTSSSATASPP 410

Query: 369 SYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRG 428
             +++  +    L+     +   +       L         + V+TS   N        G
Sbjct: 411 PRSSSPMMIQQQLNNFNTNVLRENHNRAPPPL---------SGVSTSSVDNNPFQSNRSG 461

Query: 429 DQQNEQQQQVQLKLTRDFLGMTSGNQVQSV--RPFLPQELANFA 470
              N  Q   Q+ LTRDFLG+++ +       RPFLPQELA FA
Sbjct: 462 --LNPAQ---QMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFA 500

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 149/184 (80%), Positives = 166/184 (90%), Gaps = 7/184 (3%)

Query: 35  KKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQ 94
           KKKRNLPG PDP+AEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct: 41  KKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQ 100

Query: 95  RTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 154
           RT+K+V +K+VY+CPEK+CVHH P+RALGDLTGIKKHF RKHGEKKWKCEKC+K+YAVQS
Sbjct: 101 RTSKEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQS 159

Query: 155 DWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR------LASSVVAAAS 208
           DWKAHSKTCGTREY+CDCGT+FSR+DSFITHRAFCDALAEE+ R      L S    A S
Sbjct: 160 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGS 219

Query: 209 NLNF 212
           NLN+
Sbjct: 220 NLNY 223

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  332 bits (851), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 176/222 (79%), Gaps = 16/222 (7%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMA 60
           + SG+ F  P S     H E   NP         KKKRNLPG PDP+AEVIALSP TLMA
Sbjct: 9   ISSGSGFAQPQSSSTLDHDESLINP------PLVKKKRNLPGNPDPEAEVIALSPTTLMA 62

Query: 61  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           TNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL+QRT+K+V +K+VY+CPEKTCVHH  SR
Sbjct: 63  TNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHHHSSR 121

Query: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180
           ALGDLTGIKKHF RKHGEKKW CEKC+K+YAVQSDWKAHSKTCGTREY+CDCGT+FSR+D
Sbjct: 122 ALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRD 181

Query: 181 SFITHRAFCDALAEESTR---------LASSVVAAASNLNFR 213
           SFITHRAFCDALAEE+ +         LA++    + NLN++
Sbjct: 182 SFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQ 223

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 114/251 (45%), Gaps = 31/251 (12%)

Query: 50  VIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQ---RTNKDVIKKKV- 105
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K      + +KD   +   
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 106 ---YICPEKTCV---HHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSDWKA 158
              Y CP   C     H+  + L  +  +K H+ R H +K + C +C +KK++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 159 HSKTCGTREYKCDCGTLFSRKDSFITHRAF----CDALAEESTRL-----------ASSV 203
           H K CG  ++ C CGT FSRKD    H A       AL  +  ++           A + 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTGASEQPQGSEAMNT 447

Query: 204 VAAASNLNF---RTDHTVNLPQGVPQDVAG-SISQFGSGFAGLAEMVQIG-SVSNNLFGS 258
           +  ++  NF    +D   NL   +  D    S   F   F GL +  + G  +S N F  
Sbjct: 448 MVGSAGYNFPGSSSDDIPNLDMKMADDPRYFSPLSFDPCFGGLDDFTRPGFDISENPFSF 507

Query: 259 SSSNMGNFGHQ 269
             S   +FG Q
Sbjct: 508 LPSGSCSFGQQ 518

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 13/158 (8%)

Query: 44  PDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQ---RTNKDV 100
           P    E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      + NK+ 
Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKES 283

Query: 101 IKK------KVYICPEKTCV---HHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKY 150
           +        K Y CP   C     H+  + L  +  +K H+ R H +K + C +C +KK+
Sbjct: 284 VPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKF 343

Query: 151 AVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAF 188
           +V +D K H K CG  ++ C CGT FSRKD    H A 
Sbjct: 344 SVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 50  VIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWK----------LRQRTNKD 99
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +   + 
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 100 VIKKKVYICPEKTCVH---HEPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 155
              ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 156 WKAHSKTCGTREYKCDCGTLFSRKDSFITHRAF 188
            K H K CG   + C CGT FSRKD    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 48  AEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNL-----PWKLRQRTNKDVIK 102
           A  I    + L+    F C +C K F R  NLQ+H  GH       P  L+    + ++ 
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 103 KKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 160
              Y C E  +  + H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 161 KTCGTREYKCDCGTLFSRKDSFITH-RAF 188
           K CG R + C CG+ F  K S   H +AF
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 27  PKPNQAASKKKRNLPGTPDPDA-EVIALSPKTLMATNR--FICEI--CNKGFQRDQNLQL 81
           P+P  A  +     P  P P A E+I  S   L    R   +C +  C K       L +
Sbjct: 49  PRPAGATQQ-----PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNM 103

Query: 82  HR-RGHNLPWKLRQRTNKDVIK--KKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE 138
           H  + H L   +   T +  +K   K Y CP + C    P R     + +K+HF + H E
Sbjct: 104 HLVKSHRLQDGIVNPTIRKDLKTGPKFYCCPIEGCPRG-PERPFSQFSLVKQHFMKMHAE 162

Query: 139 KKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITH 185
           KK KC KCS  Y  + D K H++ CG + ++C CG  ++ + +  +H
Sbjct: 163 KKHKCSKCSNSYGTEWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 64  FICEI--CNKGFQRDQNLQLHR-RGHNLPWKLRQRT-NKDVI-KKKVYICPEKTCVHHEP 118
            +C +  C K       L +H  + H L   +   T  KD+    K Y CP K C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGCPRG-P 138

Query: 119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR 178
            R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 179 KDSFITH 185
           + +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q8BXX2|ZBT49_MOUSE Zinc finger and BTB domain-containing protein 49 OS=Mus musculus GN=Zbtb49 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 35/159 (22%)

Query: 34  SKKKRNLPGTP----DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLP 89
           S ++  LPG P    DP         + L    ++ CE+C K F+   NL+LH+R H   
Sbjct: 360 SSREEELPGAPASWEDPS--------QALQPQKQYACELCGKPFKHPSNLELHKRSHT-- 409

Query: 90  WKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKK 149
                        +K + C    C  H           ++ H  R  GEK + CE C K+
Sbjct: 410 ------------GEKPFEC--NICGKH-----FSQAGNLQTHLRRHSGEKPYICEICGKR 450

Query: 150 YAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHR 186
           +A   D + H     G + + CD CG  FS   +   H+
Sbjct: 451 FAASGDVQRHIIIHSGEKPHLCDTCGRGFSNFSNLKEHK 489

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
359481520	490	PREDICTED: zinc finger protein NUTCRACKE	0.924	0.920	0.586	1e-139
255557032	525	nucleic acid binding protein, putative [	0.905	0.841	0.530	1e-136
297741581	469	unnamed protein product [Vitis vinifera]	0.901	0.938	0.578	1e-136
147783024	474	hypothetical protein VITISV_009698 [Viti	0.840	0.864	0.592	1e-127
357440457	500	Zinc finger protein [Medicago truncatula	0.879	0.858	0.497	1e-122
297806263	505	zinc finger family protein [Arabidopsis	0.879	0.849	0.493	1e-119
356545973	525	PREDICTED: zinc finger protein MAGPIE-li	0.891	0.828	0.513	1e-119
224138662	407	predicted protein [Populus trichocarpa]	0.788	0.945	0.523	1e-119
30679912	503	zinc finger protein JACKDAW [Arabidopsis	0.909	0.882	0.505	1e-117
110737692	497	hypothetical protein [Arabidopsis thalia	0.901	0.885	0.505	1e-116

>gi|359481520|ref|XP_002275477.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 309/527 (58%), Positives = 353/527 (66%), Gaps = 76/527 (14%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMA 60
           MMSG+ F+IPSS+  F    Q+P+ NP   +   KKKRNLPGTPDPDAEVIALSPKTLMA
Sbjct: 1   MMSGDMFSIPSSIRTFA---QDPDANPNNLKPPPKKKRNLPGTPDPDAEVIALSPKTLMA 57

Query: 61  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           TNRFICEICNKGFQRDQNLQLHRRGHNLPWKL+QR+NK+V +KKVYICPEKTCVHH+PSR
Sbjct: 58  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEV-RKKVYICPEKTCVHHDPSR 116

Query: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD
Sbjct: 117 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 176

Query: 181 SFITHRAFCDALAEESTRLASSVVAAASNLNFRTD---HTVNLPQ----------GVPQD 227
           SFITHRAFCDALAEE  R+ S    AA+NLNFR D    TV  PQ          G P D
Sbjct: 177 SFITHRAFCDALAEERARITS---VAATNLNFRNDSMNETVINPQPGLLNGFSGRGGP-D 232

Query: 228 VAGSISQFGSGFA----GLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTN 283
            AG ISQF  GF     GL EMVQ+   ++NLFGSSS  +GNFG   +      + AT+N
Sbjct: 233 AAG-ISQFCPGFGPDLTGLPEMVQV--AASNLFGSSS--VGNFGSCNESPWLDKSSATSN 287

Query: 284 SKSANLTLLS---ELKEE-------TSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQ 333
              ANL+L S    LKEE          L +  S + ++Q  P A  PMSATALLQKAAQ
Sbjct: 288 --GANLSLASLPHALKEEEGNKGSMVETLTSLYSGNHSQQSSPAA--PMSATALLQKAAQ 343

Query: 334 MGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGS-----AVTL 388
           MGSTRSN     S FGN  G  N   S S++ N  ++N N  LH    +G        T 
Sbjct: 344 MGSTRSN----PSFFGNSFGVMNSSGSHSTTLNTLTHNRN-ELHQVFGTGKQHENLMATA 398

Query: 389 ATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQL-------K 441
           + S+GV+          +  ++  +TS+ L Q MMMQT G Q      ++ L        
Sbjct: 399 SLSEGVLA--------GSGLSSLTSTSNNLAQ-MMMQTSGKQTEPVPLKLHLGSNSVENS 449

Query: 442 LTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN 488
           LTRDFLGM  G   +S RPFLPQELA FAS +GS   +GLS FTSN+
Sbjct: 450 LTRDFLGMGGG---ESGRPFLPQELAKFAS-MGSA--MGLSHFTSNH 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557032|ref|XP_002519549.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541412|gb|EEF42963.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/569 (53%), Positives = 352/569 (61%), Gaps = 127/569 (22%)

Query: 1   MMSG---NAFTIPSSLGGFVH---QEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALS 54
           MMSG   +AF+IPSSL GF H   Q+           +A+KKKRNLPGTPDPDAEVIALS
Sbjct: 1   MMSGGHHDAFSIPSSLPGFAHLDQQQNANPNPKPNPNSAAKKKRNLPGTPDPDAEVIALS 60

Query: 55  PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCV 114
           PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL+QRTNK+V KKKVYICPEKTCV
Sbjct: 61  PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV-KKKVYICPEKTCV 119

Query: 115 HHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGT 174
           HH+ SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGT
Sbjct: 120 HHDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGT 179

Query: 175 LFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHT-VNLPQGVP----QDVA 229
           LFSRKDSFITHRAFCDALAEES R  S   A  +NLNFR +++ VNLP G P    QD+A
Sbjct: 180 LFSRKDSFITHRAFCDALAEESARFNS---APPANLNFRNENSVVNLPHGAPGHGVQDIA 236

Query: 230 GSISQF--------------------------------------------------GSGF 239
            SISQF                                                   S  
Sbjct: 237 -SISQFSTSTFRSDVNAMTCVSSDQQKPAGLSLWLNQVNSHMNPADTVANNSSLYASSNS 295

Query: 240 AGLAEMVQIGSVSNNLFGSSSS-NMGNFGHQFQGFHKSMAGATTNSKSANLTLLSELKEE 298
            GL EMVQIG  S+NL+GSSS+ N GN      G    +       K  N+T      + 
Sbjct: 296 TGLPEMVQIG--SSNLYGSSSATNFGNL--TLSGLPHGLKEEEGGDKRTNMT------DS 345

Query: 299 TSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFN--- 355
              LY+ +  H+NKQ KPVA  PMSATALLQKAAQMGSTRS+N    S FG  S +    
Sbjct: 346 LPSLYSDN--HQNKQSKPVA--PMSATALLQKAAQMGSTRSSNQ---SFFGGSSNYGLMS 398

Query: 356 NVMSSSSSSSNATSYNNNTSLH----------NTNLSGSAVTLATSDGVMGSSNLRSMNT 405
           +  SSS++++  +   N   LH           +NL+ S+ ++   D +M          
Sbjct: 399 SSSSSSNTTNLNSLRQNRNELHQVFQNVNKQQESNLTASSCSMPMGDAIM---------- 448

Query: 406 TTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQL-------KLTRDFLGMTSGNQVQSV 458
                 +A S  L+Q+++MQ+ G Q +  Q ++Q         LTRDFLGM+     QS 
Sbjct: 449 ------IAASSGLDQVVLMQSSGKQSDPVQLKLQPGSTSLESGLTRDFLGMSG----QSG 498

Query: 459 RPFLPQELANFASNIGSVSPIGLSQFTSN 487
           RPFLPQE+A FAS + +V  +GLSQFT N
Sbjct: 499 RPFLPQEIAKFAS-MSAV--MGLSQFTGN 524

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741581|emb|CBI32713.3| unnamed protein product [Vitis vinifera]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 298/515 (57%), Positives = 340/515 (66%), Gaps = 75/515 (14%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMA 60
           MMSG+ F+IPSS+  F    Q+P+ NP   +   KKKRNLPGTPDPDAEVIALSPKTLMA
Sbjct: 3   MMSGDMFSIPSSIRTFA---QDPDANPNNLKPPPKKKRNLPGTPDPDAEVIALSPKTLMA 59

Query: 61  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           TNRFICEICNKGFQRDQNLQLHRRGHNLPWKL+QR+NK+V +KKVYICPEKTCVHH+PSR
Sbjct: 60  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEV-RKKVYICPEKTCVHHDPSR 118

Query: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD
Sbjct: 119 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 178

Query: 181 SFITHRAFCDALAEESTRLASSVVAAASNLNFRTD---HTVNLPQ----------GVPQD 227
           SFITHRAFCDALAEE  R+ S    AA+NLNFR D    TV  PQ          G P D
Sbjct: 179 SFITHRAFCDALAEERARITS---VAATNLNFRNDSMNETVINPQPGLLNGFSGRGGP-D 234

Query: 228 VAGSISQFGSGFA----GLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTN 283
            AG ISQF  GF     GL EMVQ+   ++NLFGSSS  +GNFG   +      + AT+N
Sbjct: 235 AAG-ISQFCPGFGPDLTGLPEMVQV--AASNLFGSSS--VGNFGSCNESPWLDKSSATSN 289

Query: 284 SKSANLTLLS---ELKEE-------TSCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQ 333
              ANL+L S    LKEE          L +  S + ++Q  P A  PMSATALLQKAAQ
Sbjct: 290 --GANLSLASLPHALKEEEGNKGSMVETLTSLYSGNHSQQSSPAA--PMSATALLQKAAQ 345

Query: 334 MGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGSAVTLATSDG 393
           MGSTRSN     S FGN  G  N   S S++ N  ++N N  LH                
Sbjct: 346 MGSTRSN----PSFFGNSFGVMNSSGSHSTTLNTLTHNRN-ELHQ--------------- 385

Query: 394 VMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDFLGMTSGN 453
           V G+         T + +  TS    + + ++      +     V+  LTRDFLGM  G 
Sbjct: 386 VFGTGKQHENLMATASLSEGTSGKQTEPVPLKL-----HLGSNSVENSLTRDFLGMGGG- 439

Query: 454 QVQSVRPFLPQELANFASNIGSVSPIGLSQFTSNN 488
             +S RPFLPQELA FAS +GS   +GLS FTSN+
Sbjct: 440 --ESGRPFLPQELAKFAS-MGSA--MGLSHFTSNH 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783024|emb|CAN61309.1| hypothetical protein VITISV_009698 [Vitis vinifera]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 286/483 (59%), Positives = 322/483 (66%), Gaps = 73/483 (15%)

Query: 45  DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKK 104
           DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL+QR+NK+V +KK
Sbjct: 26  DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEV-RKK 84

Query: 105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCG 164
           VYICPEKTCVHH+PSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCG
Sbjct: 85  VYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCG 144

Query: 165 TREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTD---HTVNLP 221
           TREYKCDCGTLFSRKDSFITHRAFCDALAEE  R+ S    AA+NLNFR D    TV  P
Sbjct: 145 TREYKCDCGTLFSRKDSFITHRAFCDALAEERARITS---VAATNLNFRNDSMNETVINP 201

Query: 222 Q----------GVPQDVAGSISQFGSGFA----GLAEMVQIGSVSNNLFGSSSSNMGNFG 267
           Q          G P D AG ISQF  GF     GL EMVQ+   ++NLFGSSS  +GNFG
Sbjct: 202 QPGLLNGFSGRGGP-DAAG-ISQFCPGFGPDLTGLPEMVQV--AASNLFGSSS--VGNFG 255

Query: 268 HQFQGFHKSMAGATTNSKSANLTLLS---ELKEE-------TSCLYNSDSTHENKQLKPV 317
              +      + AT+N   ANL+L S    LKEE          L +  S + ++Q  P 
Sbjct: 256 SCNESPWLDKSSATSN--GANLSLASLPHALKEEEGNKGSMVETLTSLYSGNHSQQSSPA 313

Query: 318 AVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNNNTSLH 377
           A  PMSATALLQKAAQMGSTRSN     S FGN  G  N   S S++ N  ++N N  LH
Sbjct: 314 A--PMSATALLQKAAQMGSTRSN----PSFFGNSFGVMNSSGSHSTTLNTLTHNRN-ELH 366

Query: 378 NTNLSGS-----AVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQN 432
               +G        T + S+GV+  S L S+ +T+   A          MMMQT G Q  
Sbjct: 367 QVFGTGKQHENLMATASLSEGVLAGSXLSSLTSTSNNLAQ---------MMMQTSGKQTE 417

Query: 433 EQQQQVQL-------KLTRDFLGMTSGNQVQSVRPFLPQELANFASNIGSVSPIGLSQFT 485
               ++ L        LTRDFLGM  G   +S RPFLPQELA FAS +GS   +GLS FT
Sbjct: 418 PVPLKLHLGSNSVENSLTRDFLGMGGG---ESGRPFLPQELAKFAS-MGSA--MGLSHFT 471

Query: 486 SNN 488
           SN+
Sbjct: 472 SNH 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440457|ref|XP_003590506.1| Zinc finger protein [Medicago truncatula] gi|355479554|gb|AES60757.1| Zinc finger protein [Medicago truncatula]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/555 (49%), Positives = 330/555 (59%), Gaps = 126/555 (22%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQ-AASKKKRNLPGTPDPDAEVIALSPKTLM 59
           M+ G+ F++ +SLGGF  QEQN NPNPKPN  +  KKKRNLPGTPDPDAEVIALSPKTLM
Sbjct: 3   MIPGDPFSLSTSLGGFTTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLM 62

Query: 60  ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPS 119
           ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQR+NKDVIKKKVYICPEKTCVHH+PS
Sbjct: 63  ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPS 122

Query: 120 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRK 179
           RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH+KTCGTREYKCDCGTLFSRK
Sbjct: 123 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRK 182

Query: 180 DSFITHRAFCDALAEESTRLASSVVAAASNLNFRTD----------HTVN-LPQGVPQDV 228
           DSFITHRAFCDALAEES R+ S      +NLNF+ +          H+ + L  G+ Q++
Sbjct: 183 DSFITHRAFCDALAEESARVTS---VTTTNLNFKNEEGSAMMNPHSHSQHGLSHGILQNI 239

Query: 229 AG-SISQFGS------GFAGLAE---MV-----------------QIGSVSNNLFGSSS- 260
            G    QFGS       F G+     M+                 ++G  SN+LFGSS  
Sbjct: 240 GGIPHPQFGSHGFHHVDFNGIGNKNTMIMEQQRPSLSLWLNQGNHEMGQSSNSLFGSSGL 299

Query: 261 SNMGNFGHQFQGFHK----------SMAG--ATTNSKSANLTLLSELKEETSCLYNSDST 308
           S +   G+     +           SM G  A+ ++ +ANL+L       +         
Sbjct: 300 SEIVQMGNAATNNNNNNALICSSSSSMFGIPASNSTSAANLSLSKPASSGSVT------- 352

Query: 309 HENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNAT 368
                   V+  PMSATALLQKAAQMGSTR                          SN +
Sbjct: 353 --------VSATPMSATALLQKAAQMGSTR--------------------------SNTS 378

Query: 369 SYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTL-NQLMMMQTR 427
           + NNN S+     S S   + +      S+ L + +    A A  +S+++ +Q  M   +
Sbjct: 379 NDNNNPSI----FSSSFGVMTSPSSSTSSAMLGNSSAGAAANANYSSNSIFDQFFMHGPQ 434

Query: 428 GDQQNE--------------QQQQVQLK-LTRDFLGMTSGNQVQSVRPFLPQELANFASN 472
            DQQ +                 QVQ   LTRDFLG++ G +    + FLPQE+A FAS+
Sbjct: 435 SDQQGKLNIMHHGGSGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPPQ-FLPQEIAKFASS 493

Query: 473 IGSVSPIGLSQFTSN 487
           I         QFT N
Sbjct: 494 I---------QFTGN 499

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806263|ref|XP_002871015.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297316852|gb|EFH47274.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 267/541 (49%), Positives = 328/541 (60%), Gaps = 112/541 (20%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQ-------------------AASKKKRNLP 41
           M+ G+ F+I SS+GGFVHQE + +    P Q                   +++KKKRN P
Sbjct: 3   MIPGDPFSISSSMGGFVHQETHLH---HPQQQIPDLNPNSNPNPNVKPNSSSAKKKRNQP 59

Query: 42  GTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVI 101
           GTPDPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VI
Sbjct: 60  GTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVI 119

Query: 102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK 161
           KKKVYICP KTCVHH+ SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAH+K
Sbjct: 120 KKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAK 179

Query: 162 TCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLAS----SVVAAASNLNFRTDHT 217
           TCGTREYKCDCGTLFSRKDSFITHRAFCDAL EE  R++S    + V + +NLNF  D  
Sbjct: 180 TCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNDSN 239

Query: 218 V----NLPQGVPQ------DVAGSISQFGSGFA---------GLAEMVQIGSVSNN-LFG 257
           V    NLP G         D+  +ISQFG GF          GL+EMVQ+ S  N+  F 
Sbjct: 240 VMNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHPFP 299

Query: 258 SSSSNMGNFG--HQFQGFHKSMAGATTN----------SKSANLTLLSELKEETSCLYNS 305
           SSSS++ +F   HQFQ     +   +TN          S+  + +L  +  +++S     
Sbjct: 300 SSSSSLPDFSGHHQFQ-----IPTTSTNPNLTLSSSSTSQQTSASLQHQTLKDSSFSPLF 354

Query: 306 DSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSS 365
            S+ ENKQ KP++  PMSATALLQKAAQMGSTRSN+    S F   +  ++  ++S    
Sbjct: 355 SSSSENKQNKPLS--PMSATALLQKAAQMGSTRSNSTTAPSFFAGPTMTSSSATASPPPP 412

Query: 366 NAT-----------SYNNNTSLHNTNLSG---SAVTLATSDGVMGSSNLRSMNTTTTAAA 411
             +           ++N N S  N NL+    S VT ++ D     SN   +N       
Sbjct: 413 PRSSSPMMIQQQLNNFNTNVSRENPNLAPPPLSGVTTSSVDNNPFQSNRSGLNLVQ---- 468

Query: 412 VATSDTLNQLMMMQTRGDQQNEQQQQVQLKLTRDFLGMTSGNQVQSV--RPFLPQELANF 469
                                      Q+ LTRDFLG+++ +       RPFLPQELA F
Sbjct: 469 ---------------------------QMGLTRDFLGVSNEHHPHQTGRRPFLPQELARF 501

Query: 470 A 470
           A
Sbjct: 502 A 502

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545973|ref|XP_003541407.1| PREDICTED: zinc finger protein MAGPIE-like [Glycine max]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 295/574 (51%), Positives = 350/574 (60%), Gaps = 139/574 (24%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMA 60
           MM G+ F++ +S+GGF   +QN            KKKRNLPGTPDPDAEVIALSPKTLMA
Sbjct: 3   MMPGDPFSLSTSIGGFTQDKQN-TNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMA 61

Query: 61  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQR+NK+V +KKVYICPE+TCVHH+P+R
Sbjct: 62  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEV-RKKVYICPEQTCVHHDPAR 120

Query: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH+KTCGTREYKCDCGTLFSRKD
Sbjct: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKD 180

Query: 181 SFITHRAFCDALAEESTRLASSVVAAASNLNFRTDH----TVNLPQGVP----------- 225
           SFITHRAFCDALAEES RL S      +NLNF+++      +N  Q              
Sbjct: 181 SFITHRAFCDALAEESARLTS---VTTTNLNFKSEEGGNNVMNSQQHGLGGHGLIGAQSL 237

Query: 226 QDVAGSISQFGS-GF--------------------------------------------- 239
           Q+V+G I QFGS GF                                             
Sbjct: 238 QNVSG-IPQFGSHGFRLDFNGMEQQIRPSLSLWLNQGNHQMNSNNNNINSNNNSASDAGP 296

Query: 240 -----AGLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQGFHKSMAGATTNSKSANLTLLSE 294
                +GL E+VQ+   +N L G SSS + NFG    G H   AG+ ++S + +L    E
Sbjct: 297 NYMSSSGLPEIVQMAH-ANALMGCSSSMVSNFG----GVH---AGSNSSSANLSLGKRGE 348

Query: 295 LKEET----SCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGN 350
               T    + +YN +S  +NK  KP +  PMSATALLQKAAQMGSTRS N    SIF  
Sbjct: 349 ACGSTVVDLASIYN-NSEGQNKNSKPAS--PMSATALLQKAAQMGSTRSTN---PSIF-- 400

Query: 351 GSGFNNVMSSSSSSSNATSYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAA 410
            SG   V++S SS +        TSL+N N  G+A+ LA++              T+TAA
Sbjct: 401 -SGSFGVINSPSSQT--------TSLNNNNNGGAAMMLASN--------------TSTAA 437

Query: 411 AVA--------TSDTLNQLMMMQTRGDQQNEQQQQVQLK---------LTRDFLGMTSGN 453
           A A        +S++ +QL +MQT    Q+E    V+LK         LTRDFLG++ G 
Sbjct: 438 ANANDFSSLRHSSNSFDQL-VMQTNAQLQSE---PVKLKLHSNGMENNLTRDFLGVSGGG 493

Query: 454 QVQSVRPFLPQELANFASNIGSVSPIGLSQFTSN 487
                  FLPQEL  FAS +G  SP+GLSQFTSN
Sbjct: 494 GGGGGPQFLPQELGKFAS-MG--SPMGLSQFTSN 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138662|ref|XP_002322870.1| predicted protein [Populus trichocarpa] gi|222867500|gb|EEF04631.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/508 (52%), Positives = 308/508 (60%), Gaps = 123/508 (24%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPNPNPKPNQAASKKKRNLPGTPDPDAEVIALSPKTLMA 60
           MMSG+AF++PS + GF  Q+QN           +K+KRNLPGTPDPDAEVIALSPKTLMA
Sbjct: 3   MMSGDAFSLPSLIAGFA-QDQNNANPKPNPNPVAKRKRNLPGTPDPDAEVIALSPKTLMA 61

Query: 61  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           TNRFICEICNKGFQRDQNLQLHRRGHNLPWKL+QRTNK+V +KKVYICPEKTCVHH+ SR
Sbjct: 62  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV-RKKVYICPEKTCVHHDSSR 120

Query: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD
Sbjct: 121 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKD 180

Query: 181 SFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTVNLPQGVPQDVAGSISQFGSGFA 240
           SFITHRAFCDALA+ES R+ S      ++LNFR D TVNLP                GF+
Sbjct: 181 SFITHRAFCDALADESARITS---VQDTDLNFRND-TVNLPH---------------GFS 221

Query: 241 GLAEMVQIGSVSNNLFGSSSSNMGNFGHQFQ-GFHKSMAGATTNSKSANLTLLSELKEET 299
               +  I  +S                QF  GF    +G T                  
Sbjct: 222 NRPGVPDIAGIS----------------QFSAGFRPDFSGMT------------------ 247

Query: 300 SCLYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMS 359
                             AV PMSATALLQKAAQMGSTRSN       FGN  G  +  S
Sbjct: 248 ------------------AV-PMSATALLQKAAQMGSTRSNQ----PFFGNSYGLMSSSS 284

Query: 360 SSSSSSNATSYNNN-TSLHNT----------NLSGSAVTLATSDGVMGSSNLRSMNTTTT 408
           SSS ++N  S N N   L++           +L+ +  ++A SD VMG            
Sbjct: 285 SSSPTTNPISLNQNPNELYHVFQNVKQPASESLTATYNSVAMSDAVMG------------ 332

Query: 409 AAAVATSDTLNQLMMMQTRGDQQNEQQQ--------QVQLKLTRDFLGMTSGNQVQSVRP 460
                TS  L+QL +MQT G+ QN+  Q          +  LTRDFLGM+S    +S R 
Sbjct: 333 -----TSSNLDQL-VMQTSGNLQNDPTQLKLQRGSNSTESGLTRDFLGMSS----ESGRL 382

Query: 461 FLPQELANFASNIGSVSPIGLSQFTSNN 488
           FLP +LA FAS   ++S    + FT+N+
Sbjct: 383 FLPHDLAKFASISSAMSS---NHFTANH 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679912|ref|NP_195935.2| zinc finger protein JACKDAW [Arabidopsis thaliana] gi|75325688|sp|Q700D2.1|JKD_ARATH RecName: Full=Zinc finger protein JACKDAW; AltName: Full=ID1-like zinc finger protein 3 gi|41059985|emb|CAF18563.1| ID1-like zinc finger protein 3 [Arabidopsis thaliana] gi|45935041|gb|AAS79555.1| C2H2 type zinc finger family protein [Arabidopsis thaliana] gi|46367480|emb|CAG25866.1| hypothetical protein [Arabidopsis thaliana] gi|332003178|gb|AED90561.1| zinc finger protein JACKDAW [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 265/524 (50%), Positives = 329/524 (62%), Gaps = 80/524 (15%)

Query: 1   MMSGNAFTIPSSLGGFVHQEQNPN----------------PNPKPNQAASKKKRNLPGTP 44
           M+ G+ F+I SS+GGFVHQE + +                PN KPN +++KKKRN PGTP
Sbjct: 3   MIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTP 62

Query: 45  DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKK 104
           DPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VIKKK
Sbjct: 63  DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKK 122

Query: 105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCG 164
           VYICP KTCVHH+ SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAH+KTCG
Sbjct: 123 VYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCG 182

Query: 165 TREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLAS----SVVAAASNLNFRTDHTV-- 218
           TREYKCDCGTLFSRKDSFITHRAFCDAL EE  R++S    + V + +NLNF  +  V  
Sbjct: 183 TREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMN 242

Query: 219 --NLPQGVPQ------DVAGSISQFGSGFA---------GLAEMVQIGSVSNNLFGSSSS 261
             NLP G         D+  +ISQFG GF          GL+EMVQ+ S  N+    SSS
Sbjct: 243 NPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSS 302

Query: 262 NMGNFG---HQFQGFHKSMAGATTN----------SKSANLTLLSELKEETSCLYNSDST 308
           +        HQFQ     +   +TN          S+  + +L  +  +++S      S+
Sbjct: 303 SSLPDFSGHHQFQ-----IPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSS 357

Query: 309 HENKQLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNAT 368
            ENKQ KP++  PMSATALLQKAAQMGSTRSN++   S F   +     M+SSS++++  
Sbjct: 358 SENKQNKPLS--PMSATALLQKAAQMGSTRSNSSTAPSFFAGPT-----MTSSSATASPP 410

Query: 369 SYNNNTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRG 428
             +++  +    L+     +   +       L         + V+TS   N        G
Sbjct: 411 PRSSSPMMIQQQLNNFNTNVLRENHNRAPPPL---------SGVSTSSVDNNPFQSNRSG 461

Query: 429 DQQNEQQQQVQLKLTRDFLGMTSGNQVQSV--RPFLPQELANFA 470
              N  Q   Q+ LTRDFLG+++ +       RPFLPQELA FA
Sbjct: 462 --LNPAQ---QMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFA 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737692|dbj|BAF00785.1| hypothetical protein [Arabidopsis thaliana]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/520 (50%), Positives = 326/520 (62%), Gaps = 80/520 (15%)

Query: 5   NAFTIPSSLGGFVHQEQNPN----------------PNPKPNQAASKKKRNLPGTPDPDA 48
           + F+I SS+GGFVHQE + +                PN KPN +++KKKRN PGTPDPDA
Sbjct: 1   DPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTPDPDA 60

Query: 49  EVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYIC 108
           +VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VIKKKVYIC
Sbjct: 61  DVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYIC 120

Query: 109 PEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREY 168
           P KTCVHH+ SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAH+KTCGTREY
Sbjct: 121 PIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREY 180

Query: 169 KCDCGTLFSRKDSFITHRAFCDALAEESTRLAS----SVVAAASNLNFRTDHTV----NL 220
           KCDCGTLFSRKDSFITHRAFCDAL EE  R++S    + V + +NLNF  +  V    NL
Sbjct: 181 KCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMNNPNL 240

Query: 221 PQGVPQ------DVAGSISQFGSGFA---------GLAEMVQIGSVSNNLFGSSSSNMGN 265
           P G         D+  +ISQFG GF          GL+EMVQ+ S  N+    SSS+   
Sbjct: 241 PHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSSSSLP 300

Query: 266 FG---HQFQGFHKSMAGATTN----------SKSANLTLLSELKEETSCLYNSDSTHENK 312
                HQFQ     +   +TN          S+  + +L  +  +++S      S+ ENK
Sbjct: 301 DFSGHHQFQ-----IPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSSSENK 355

Query: 313 QLKPVAVGPMSATALLQKAAQMGSTRSNNNPITSIFGNGSGFNNVMSSSSSSSNATSYNN 372
           Q KP++  PMSATALLQKAAQMGSTRSN++   S F   +     M+SSS++++    ++
Sbjct: 356 QNKPLS--PMSATALLQKAAQMGSTRSNSSTAPSFFAGPT-----MTSSSATASPPPRSS 408

Query: 373 NTSLHNTNLSGSAVTLATSDGVMGSSNLRSMNTTTTAAAVATSDTLNQLMMMQTRGDQQN 432
           +  +    L+     +   +       L         + V+TS   N        G   N
Sbjct: 409 SPMMIQQQLNNFNTNVLRENRNRAPPPL---------SGVSTSSVDNNPFQSNRSG--LN 457

Query: 433 EQQQQVQLKLTRDFLGMTSGNQVQSV--RPFLPQELANFA 470
             Q   Q+ LTRDFLG+++ +       RPFLPQELA FA
Sbjct: 458 PAQ---QMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFA 494

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.489	0.475	0.602	2.4e-100
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.329	0.353	0.807	2.2e-82
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.329	0.360	0.819	2.8e-80
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.329	0.318	0.802	2.8e-80
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.327	0.265	0.776	1.2e-79
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.366	0.445	0.723	1.9e-79
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.327	0.32	0.813	5.9e-78
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.327	0.310	0.751	1.9e-77
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.327	0.353	0.807	3.2e-77
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.329	0.345	0.783	4.6e-76

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
 Identities = 162/269 (60%), Positives = 179/269 (66%)

Query:     1 MMSGNAFTIPSSLGGFVHQEXXXXXXXXXX----------------XXXXXXXRNLPGTP 44
             M+ G+ F+I SS+GGFVHQE                                 RN PGTP
Sbjct:     3 MIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTP 62

Query:    45 DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKK 104
             DPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VIKKK
Sbjct:    63 DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKK 122

Query:   105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCG 164
             VYICP KTCVHH+ SRALGDLTGIKKH+SRKHG            YAVQSDWKAH+KTCG
Sbjct:   123 VYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCG 182

Query:   165 TREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLXXXXXX----XXXNLNFRTDHTV-- 218
             TREYKCDCGTLFSRKDSFITHRAFCDAL EE  R+             NLNF  +  V  
Sbjct:   183 TREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMN 242

Query:   219 --NLPQGVPQ------DVAGSISQFGSGF 239
               NLP G         D+  +ISQFG GF
Sbjct:   243 NPNLPHGFVHRGVHHPDINAAISQFGLGF 271

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 2.2e-82, Sum P(3) = 2.2e-82
 Identities = 130/161 (80%), Positives = 142/161 (88%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RN PG PDP+AEV+ALSPKTLMATNRFICE+CNKGFQRDQNLQLH+RGHNLPWKL+QR+N
Sbjct:    66 RNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSN 125

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             KDV++KKVY+CPE  CVHH PSRALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:   126 KDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWK 185

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AH+KTCGT+EYKCDCGTLFSR+DSFITHRAFCDALAEES R
Sbjct:   186 AHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAR 226

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 132/161 (81%), Positives = 142/161 (88%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RNLPG PDPDAEVIALSP +LM TNRFICE+CNKGF+RDQNLQLHRRGHNLPWKL+QRTN
Sbjct:    42 RNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTN 101

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+ +KKKVYICPEKTCVHH+P+RALGDLTGIKKHFSRKHG            YAV SDWK
Sbjct:   102 KEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWK 161

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AHSK CGT+EY+CDCGTLFSRKDSFITHRAFCDALAEES R
Sbjct:   162 AHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESAR 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 130/162 (80%), Positives = 144/162 (88%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RNLPG PDP+AEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL+QRT+
Sbjct:    44 RNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTS 103

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V +K+VY+CPEK+CVHH P+RALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:   104 KEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWK 162

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRL 199
             AHSKTCGTREY+CDCGT+FSR+DSFITHRAFCDALAEE+ RL
Sbjct:   163 AHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARL 204

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
 Identities = 125/161 (77%), Positives = 141/161 (87%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RN P TP+ DAEVIALSPKTLMATNRFICE+CNKGFQR+QNLQLHRRGHNLPWKL+Q++ 
Sbjct:    55 RNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKST 114

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V K+KVY+CPE +CVHH+PSRALGDLTGIKKH+ RKHG            YAVQSDWK
Sbjct:   115 KEV-KRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWK 173

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AHSKTCGT+EY+CDCGTLFSR+DSFITHRAFCDALA+ES R
Sbjct:   174 AHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESAR 214

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
 Identities = 131/181 (72%), Positives = 142/181 (78%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             R LPG PDPDAEVIALSPKTL+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q+  
Sbjct:    56 RGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNT 115

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+  KKKVY+CPE  C HH PSRALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:   116 KEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWK 175

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRLXXXXXXXXXNLN--FRTD 215
             AH+K CGTR+Y+CDCGTLFSRKD+FITHRAFCDALAEES RL         N N  F+  
Sbjct:   176 AHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHSTSSSNLTNPNPNFQGH 235

Query:   216 H 216
             H
Sbjct:   236 H 236

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
 Identities = 131/161 (81%), Positives = 140/161 (86%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RNLPG PDPDAEVIALSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLRQR+ 
Sbjct:    35 RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRST 94

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V +KKVY+CP   CVHH+PSRALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:    95 KEV-RKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWK 153

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AHSK CGT+EYKCDCGTLFSR+DSFITHRAFCDALAEES +
Sbjct:   154 AHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAK 194

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.9e-77, Sum P(3) = 1.9e-77
 Identities = 121/161 (75%), Positives = 141/161 (87%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RN PG P+PDAEV+ALSPKTLMATNRFIC++CNKGFQR+QNLQLHRRGHNLPWKL+Q++ 
Sbjct:    57 RNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKST 116

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V K+KVY+CPE TCVHH+PSRALGDLTGIKKH+ RKHG            YAVQSDWK
Sbjct:   117 KEV-KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWK 175

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AHSKTCGT+EY+CDCGT+FSR+DS+ITHRAFCDAL +E+ R
Sbjct:   176 AHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETAR 216

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 130/161 (80%), Positives = 143/161 (88%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RNLPG PDP++EVIALSPKTL+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLRQ++N
Sbjct:    37 RNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSN 96

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V KKKVY+CPE +CVHH+PSRALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:    97 KEV-KKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWK 155

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTR 198
             AHSK CGT+EYKCDCGTLFSR+DSFITHRAFCDALAEE+ R
Sbjct:   156 AHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENAR 196

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
 Identities = 127/162 (78%), Positives = 142/162 (87%)

Query:    38 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTN 97
             RNLPG PDP+AEVIALSP TLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL+QRT+
Sbjct:    40 RNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTS 99

Query:    98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWK 157
             K+V +K+VY+CPEKTCVHH  SRALGDLTGIKKHF RKHG            YAVQSDWK
Sbjct:   100 KEV-RKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWK 158

Query:   158 AHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRL 199
             AHSKTCGTREY+CDCGT+FSR+DSFITHRAFCDALAEE+ ++
Sbjct:   159 AHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKI 200

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q700D2	JKD_ARATH	No assigned EC number	0.5057	0.9098	0.8827	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.9
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.75
KOG3576	267	consensus Ovo and related transcription factors [T	99.68
KOG3608	467	consensus Zn finger proteins [General function pre	99.58
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.56
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.43
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.37
KOG3576	267	consensus Ovo and related transcription factors [T	99.35
KOG3608	467	consensus Zn finger proteins [General function pre	99.3
PLN03086	567	PRLI-interacting factor K; Provisional	99.13
PHA00733	128	hypothetical protein	98.95
PLN03086	567	PRLI-interacting factor K; Provisional	98.94
PHA00733	128	hypothetical protein	98.79
PHA02768	55	hypothetical protein; Provisional	98.52
KOG3993	500	consensus Transcription factor (contains Zn finger	98.5
PHA02768	55	hypothetical protein; Provisional	98.46
KOG3993	500	consensus Transcription factor (contains Zn finger	98.35
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.23
PHA00616	44	hypothetical protein	97.79
PHA00732	79	hypothetical protein	97.71
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.67
PHA00616	44	hypothetical protein	97.66
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.6
PHA00732	79	hypothetical protein	97.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.26
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.15
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.14
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.12
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.66
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.64
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.61
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.57
COG5048	467	FOG: Zn-finger [General function prediction only]	96.54
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.39
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.36
smart00355	26	ZnF_C2H2 zinc finger.	95.4
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.4
smart00355	26	ZnF_C2H2 zinc finger.	95.36
COG5048	467	FOG: Zn-finger [General function prediction only]	95.32
KOG1146	1406	consensus Homeobox protein [General function predi	95.31
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.19
PRK04860	160	hypothetical protein; Provisional	95.11
PRK04860	160	hypothetical protein; Provisional	94.69
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.41
KOG1146	1406	consensus Homeobox protein [General function predi	94.38
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.02
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.94
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	92.9
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.11
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.24
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.75
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	90.71
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.67
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	88.62
KOG2893	341	consensus Zn finger protein [General function pred	88.14
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	86.85
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	86.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	84.76
KOG2893	341	consensus Zn finger protein [General function pred	83.19
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	81.77
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	81.68
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	81.28

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=2.9e-25  Score=216.16  Aligned_cols=137  Identities=20%  Similarity=0.429  Sum_probs=127.1

Q ss_pred             CCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334           60 ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus        60 ~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      ...+|+|.+|||.+.+..+|.+|+.+|..           ...++.+.|++|       +|.|...-.|+.|+|+|+  -
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~-----------~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l  186 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRS-----------LDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--L  186 (279)
T ss_pred             cCCceeccccccccccccccchhhccccc-----------ccccccccCCCC-------CceeeehHHHhhHhhccC--C
Confidence            44579999999999999999999999961           124778999998       999999999999999998  6


Q ss_pred             cccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhhchhccccCCCcccccC
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDH  216 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~~~~  216 (488)
                      +++|.+|||.|.+..-|+-|+|+ +|||||.|. |+|.|..+++|+.||++|...+.|+|..|+|.|+..+.|+-|.+.
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            79999999999999999999999 899999999 999999999999999999999999999999999999999977655

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.90  E-value=3.2e-24  Score=208.90  Aligned_cols=134  Identities=23%  Similarity=0.408  Sum_probs=122.7

Q ss_pred             ccCCCCCCCCCCCCchhHhhcCccccC---CCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecC
Q 011334           33 ASKKKRNLPGTPDPDAEVIALSPKTLM---ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICP  109 (488)
Q Consensus        33 ~~k~k~~~p~~~~~~~~~l~~~~k~~~---~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~  109 (488)
                      ..+.++..|++......-+.+|+.+|.   ..+.+.|++|+|.|.....|++|+|+|+                -+++|.
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~----------------l~c~C~  191 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT----------------LPCECG  191 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC----------------CCcccc
Confidence            446678889998888888899988885   4678999999999999999999999996                457888


Q ss_pred             CCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHH
Q 011334          110 EKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRA  187 (488)
Q Consensus       110 ~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r  187 (488)
                      +|       ||.|.+.+-|+-|+|+|||||||.|..|+|.|+.+++|+.|++| .+.|+|+|. |+|+|.+++.|.+|..
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            88       99999999999999999999999999999999999999999999 577999999 9999999999999987


Q ss_pred             Hh
Q 011334          188 FC  189 (488)
Q Consensus       188 ~H  189 (488)
                      .-
T Consensus       265 S~  266 (279)
T KOG2462|consen  265 SA  266 (279)
T ss_pred             hc
Confidence            63

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.75  E-value=5.4e-19  Score=191.81  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=51.1

Q ss_pred             ccCCCCCCCCCCCCchhHhhcCccccCCCCceecCccccccCChHHHHHHHHhcCC
Q 011334           33 ASKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNL   88 (488)
Q Consensus        33 ~~k~k~~~p~~~~~~~~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~   88 (488)
                      --+.+|..|.+.+.....+..|-+.|++++||+|.+||..|.++.+|+.|...|+.
T Consensus       351 ~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e  406 (958)
T KOG1074|consen  351 FFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHRE  406 (958)
T ss_pred             cccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccc
Confidence            34678889999999999999999999999999999999999999999999888763

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.68  E-value=3.1e-17  Score=153.35  Aligned_cols=120  Identities=23%  Similarity=0.530  Sum_probs=108.7

Q ss_pred             CCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334           60 ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus        60 ~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      +...|.|.+|+|.|.....|.+|++-|.              ..|.|.|..|       ||.|.+.-.|++|+|+|+|.+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~--------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHS--------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhcc--------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            4567999999999999999999999997              7788999988       999999999999999999999


Q ss_pred             cccccccCccccchhhhhhhhcc-cC-----------CcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CG-----------TREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~g-----------eKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      ||+|..|+|.|..+-.|..|.+. ||           +|-|.|+ ||.+-.+...+..|++.||...++--+.-
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~SpallKfs  246 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPALLKFS  246 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHHHHHH
Confidence            99999999999999999999887 75           3669999 99999999999999999998776644443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.58  E-value=6.6e-16  Score=154.46  Aligned_cols=183  Identities=16%  Similarity=0.252  Sum_probs=148.9

Q ss_pred             CCCCCCCCCCCCchhHhhcCccccCCCCceecCccccccCChHHHHHHHHhcC----CCccccccccccc----------
Q 011334           35 KKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHN----LPWKLRQRTNKDV----------  100 (488)
Q Consensus        35 k~k~~~p~~~~~~~~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~----~p~~~~~~~~~~~----------  100 (488)
                      ..+-.-|.....++..++.|.+.|.++|...|+.||.-|.++..|-.|.+.-+    .++.|..+.+...          
T Consensus       179 ~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~  258 (467)
T KOG3608|consen  179 MCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVV  258 (467)
T ss_pred             eccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHH
Confidence            34445677777888999999999999999999999999999999999987765    3444443332211          


Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhc-cccCCccccccccCccccchhhhhhhhcccCCcceecC---CCCcc
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD---CGTLF  176 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r-~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~---CgKsF  176 (488)
                      ....-|+|+.|       .......+.|.+|++ +|..+|||+|+.|++.|.+.++|.+|..+|.+-.|+|+   |..+|
T Consensus       259 rHvn~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~  331 (467)
T KOG3608|consen  259 RHVNCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSV  331 (467)
T ss_pred             Hhhhccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHH
Confidence            12346889888       888899999999998 57788999999999999999999999999888889997   99999


Q ss_pred             CChHHHHHHHHHhc-C--CCccchhhhchhccccCCCcccc--cCCCCCCCCC
Q 011334          177 SRKDSFITHRAFCD-A--LAEESTRLASSVVAAASNLNFRT--DHTVNLPQGV  224 (488)
Q Consensus       177 s~ks~L~~H~r~H~-~--~~~~~C~~C~~sf~~~s~L~~~~--~~~~~~~~~~  224 (488)
                      ++...+++|++-+| +  ..+|+|..|.+.|++.-+|..|.  +|...+|.+.
T Consensus       332 r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh  384 (467)
T KOG3608|consen  332 RTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGH  384 (467)
T ss_pred             HHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCC
Confidence            99999999998877 3  45689999999999998888554  4444455543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.56  E-value=1.8e-15  Score=164.71  Aligned_cols=53  Identities=28%  Similarity=0.585  Sum_probs=50.3

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      +++|.+|.|.|...+.|+.|.|.|+              +++||+|.+|       +..|.++.+|+.|..+|+
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHT--------------GERPfqCnvC-------G~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHT--------------GERPFQCNVC-------GNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccC--------------CCCCeeeccc-------ccccccccceeeeeeecc
Confidence            5789999999999999999999998              9999999999       999999999999988776

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.43  E-value=3.4e-14  Score=152.53  Aligned_cols=107  Identities=22%  Similarity=0.511  Sum_probs=94.2

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc------
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH------  136 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht------  136 (488)
                      ...|++|.+.+++...|+.|++.-+.            ..+.-|.|..|       ...|.++..|.+|+.+|.      
T Consensus       210 lltcpycdrgykrltslkeHikyrhe------------kne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa  270 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHE------------KNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQA  270 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHh------------hCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccc
Confidence            36799999999999999999876431            34667889998       899999999999999885      


Q ss_pred             -------CCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHH
Q 011334          137 -------GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       137 -------geKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~  188 (488)
                             .-|.|+|.+|+|.|+.+.+|+.|+|+ .|||||.|+ |+|+|+....+..||-.
T Consensus       271 ~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  271 ISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             ccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence                   24679999999999999999999999 699999999 99999999999999853

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.37  E-value=9e-14  Score=149.36  Aligned_cols=80  Identities=19%  Similarity=0.417  Sum_probs=52.7

Q ss_pred             CccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhhchhccccCCCccccc
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTD  215 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~~~  215 (488)
                      +.+|.|+.|+|.|...+.|.||... +|.|||+|. |.|.|..+.+|..|+|.|.+++||.|..|+|+|.+.+++..|+-
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            4456666666666666666666655 566666666 66666666666666666666666666666666666666666665


Q ss_pred             CC
Q 011334          216 HT  217 (488)
Q Consensus       216 ~~  217 (488)
                      |.
T Consensus       972 HR  973 (1007)
T KOG3623|consen  972 HR  973 (1007)
T ss_pred             cc
Confidence            53

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.35  E-value=9.9e-14  Score=130.04  Aligned_cols=107  Identities=19%  Similarity=0.339  Sum_probs=91.8

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCCh
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRK  179 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~k  179 (488)
                      ....|.|.+|       +|.|....-|.+|++-|...|.|-|..|||.|...-+|++|+|+ +|.|||+|. |+|.|..+
T Consensus       114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            4567999998       99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             HHHHHHHHHhcC-----------CCccchhhhchhccccCCCccccc
Q 011334          180 DSFITHRAFCDA-----------LAEESTRLASSVVAAASNLNFRTD  215 (488)
Q Consensus       180 s~L~~H~r~H~~-----------~~~~~C~~C~~sf~~~s~L~~~~~  215 (488)
                      -.|..|.+..|+           .+.|.|+.|+..-.....+-.|..
T Consensus       187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~  233 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLK  233 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHH
Confidence            999999876554           456789999965444333333433

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.30  E-value=7.7e-13  Score=132.68  Aligned_cols=146  Identities=17%  Similarity=0.291  Sum_probs=92.4

Q ss_pred             ceecCc--cccccCChHHHHHHHHhcCCCcccc---------ccc-------ccccccCceeecCCCcccCCCCCCccCC
Q 011334           63 RFICEI--CNKGFQRDQNLQLHRRGHNLPWKLR---------QRT-------NKDVIKKKVYICPEKTCVHHEPSRALGD  124 (488)
Q Consensus        63 py~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~---------~~~-------~~~~~~~kpy~C~~C~C~~~~c~k~F~~  124 (488)
                      .+.|..  |-+.|..+..|++|.|.|+......         .++       ........+|.|..|       .|.|.+
T Consensus       177 v~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C-------~KrFaT  249 (467)
T KOG3608|consen  177 VTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQC-------FKRFAT  249 (467)
T ss_pred             eeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHH-------HHHHhH
Confidence            467865  9999999999999999998322110         000       000122335555555       566666


Q ss_pred             hhhhhhhhccccCCccccccccCccccchhhhhhhhcc-c-CCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh--
Q 011334          125 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-C-GTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL--  199 (488)
Q Consensus       125 ~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~-geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~--  199 (488)
                      ...|+.|+++|-.  -|+|+.|+.+....+.|.+|++. | ..|||+|+ |.+.|.+.+.|.+|..+|. +..|.|+.  
T Consensus       250 eklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~  326 (467)
T KOG3608|consen  250 EKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPD  326 (467)
T ss_pred             HHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCC
Confidence            6666666666642  36677777777777777777666 3 45777777 7777777777777777665 55667766  


Q ss_pred             hchhccccCCCcccccCCC
Q 011334          200 ASSVVAAASNLNFRTDHTV  218 (488)
Q Consensus       200 C~~sf~~~s~L~~~~~~~~  218 (488)
                      |..+|.....+..|...++
T Consensus       327 C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  327 CHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             CcHHHHHHHHHHHHHHHhc
Confidence            7766666666665554433

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.13  E-value=7.6e-11  Score=127.61  Aligned_cols=81  Identities=20%  Similarity=0.435  Sum_probs=39.7

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccC----------ChHHHHHHH
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFS----------RKDSFITHR  186 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs----------~ks~L~~H~  186 (488)
                      ++.|. ...|..|+++|+  +++.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|.          +...|..|.
T Consensus       460 gk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE  534 (567)
T PLN03086        460 GQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE  534 (567)
T ss_pred             CCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH
Confidence            44443 344555555543  455555 55433 34455555544 455555555 555553          123455555


Q ss_pred             HHhcCCCccchhhhchhcc
Q 011334          187 AFCDALAEESTRLASSVVA  205 (488)
Q Consensus       187 r~H~~~~~~~C~~C~~sf~  205 (488)
                      ..| +.+++.|..|++.+.
T Consensus       535 ~~C-G~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        535 SIC-GSRTAPCDSCGRSVM  552 (567)
T ss_pred             Hhc-CCcceEccccCCeee
Confidence            553 455555555554443

>PHA00733 hypothetical protein

Probab=98.95  E-value=6e-10  Score=99.79  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=68.3

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhh------hhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCC
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIK------KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGT  174 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~------~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgK  174 (488)
                      ..+++.|.+|       .+.|.....|.      +|+. +++++||.|+.|++.|.....|..|++.+ +++|.|. |++
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK  107 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGK  107 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCC
Confidence            5788999998       66665554444      4433 34589999999999999999999999875 5689999 999


Q ss_pred             ccCChHHHHHHHHHhcCCC
Q 011334          175 LFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       175 sFs~ks~L~~H~r~H~~~~  193 (488)
                      .|.....|.+|++..|++.
T Consensus       108 ~F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             ccCCHHHHHHHHHHhcCcc
Confidence            9999999999999988753

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.94  E-value=1.5e-09  Score=117.65  Aligned_cols=104  Identities=22%  Similarity=0.441  Sum_probs=88.3

Q ss_pred             CCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcc
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKK  140 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKp  140 (488)
                      ++.+.|+.|++.|. ...|..|++.|+                ++|.|+ |       ++.+ .+..|..|+.+|..+|+
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H----------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kp  504 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH----------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRL  504 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC----------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCc
Confidence            45689999999996 678999999985                578998 7       7655 67899999999999999


Q ss_pred             ccccccCcccc----------chhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          141 WKCEKCSKKYA----------VQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       141 y~C~~Cgk~F~----------~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      +.|..|++.|.          ....|..|+.++|.+++.|. ||+.|..+ .|..|+..+|.
T Consensus       505 i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        505 ITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            99999999995          24589999999999999999 99988665 67889887765

>PHA00733 hypothetical protein

Probab=98.79  E-value=3.7e-09  Score=94.70  Aligned_cols=97  Identities=15%  Similarity=0.152  Sum_probs=76.6

Q ss_pred             hhHhhcCccccCCCCceecCccccccCChHHHHHH--HHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCCh
Q 011334           48 AEVIALSPKTLMATNRFICEICNKGFQRDQNLQLH--RRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL  125 (488)
Q Consensus        48 ~~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H--~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~  125 (488)
                      .+.+........+.+++.|.+|.+.|.....|..|  ++.|.           .....++|.|+.|       ++.|...
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-----------~~~~~kPy~C~~C-------gk~Fss~   86 (128)
T PHA00733         25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL-----------TSKAVSPYVCPLC-------LMPFSSS   86 (128)
T ss_pred             HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc-----------ccCCCCCccCCCC-------CCcCCCH
Confidence            33444444444557889999999999998888777  33331           0125789999998       9999999


Q ss_pred             hhhhhhhccccCCccccccccCccccchhhhhhhhcc-cC
Q 011334          126 TGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CG  164 (488)
Q Consensus       126 s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~g  164 (488)
                      ..|..|++.|  +++|.|..|++.|.....|.+|+.. |+
T Consensus        87 s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         87 VSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            9999999987  4679999999999999999999987 65

>PHA02768 hypothetical protein; Provisional

Probab=98.52  E-value=2.8e-08  Score=75.50  Aligned_cols=18  Identities=33%  Similarity=0.720  Sum_probs=6.8

Q ss_pred             CCCccCChHHHHHHHHHh
Q 011334          172 CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       172 CgKsFs~ks~L~~H~r~H  189 (488)
                      |||.|.+.++|..|+++|
T Consensus        11 CGK~Fs~~~~L~~H~r~H   28 (55)
T PHA02768         11 CGEIYIKRKSMITHLRKH   28 (55)
T ss_pred             hCCeeccHHHHHHHHHhc
Confidence            333333333333333333

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.50  E-value=1.3e-08  Score=104.87  Aligned_cols=133  Identities=17%  Similarity=0.241  Sum_probs=95.3

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccC-----
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG-----  137 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg-----  137 (488)
                      .|+|..|...|...-.|.+|+-.-.              -.-.|+|++|       +|.|....+|..|+|.|.-     
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI--------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa  325 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI--------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAA  325 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee--------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhh
Confidence            3999999999999999999874432              3456999999       9999999999999999851     


Q ss_pred             ---C-------------------------ccccccccCccccchhhhhhhhcccCCcc----------------------
Q 011334          138 ---E-------------------------KKWKCEKCSKKYAVQSDWKAHSKTCGTRE----------------------  167 (488)
Q Consensus       138 ---e-------------------------Kpy~C~~Cgk~F~~ks~L~~H~rt~geKp----------------------  167 (488)
                         .                         .-|.|.+|+|+|.++..|+.|+.+|...+                      
T Consensus       326 ~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~  405 (500)
T KOG3993|consen  326 KAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQ  405 (500)
T ss_pred             hcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccc
Confidence               1                         13789999999999999998866532110                      


Q ss_pred             -------------------------eecC-CCCccCChHHHHHHHHHhcCCCccchhhhchhccccCCCcccccC
Q 011334          168 -------------------------YKCD-CGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDH  216 (488)
Q Consensus       168 -------------------------y~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~~~~  216 (488)
                                               ..|+ |+-.+..+..--.|.|.-+....|.|++|...|.....|..|...
T Consensus       406 ~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  406 AVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             ccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence                                     1234 555555555555555555566667777777777666666654433

>PHA02768 hypothetical protein; Provisional

Probab=98.46  E-value=8.5e-08  Score=72.84  Aligned_cols=43  Identities=19%  Similarity=0.466  Sum_probs=39.7

Q ss_pred             cccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHH
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFI  183 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~  183 (488)
                      -|+|++||+.|.+.++|..|+++|. ++|+|. |+|.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            3899999999999999999999976 899999 999999988775

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.35  E-value=1.1e-07  Score=98.13  Aligned_cols=144  Identities=17%  Similarity=0.249  Sum_probs=100.2

Q ss_pred             CCCCCCCCchhHhhcCccccCCCCceecCccccccCChHHHHHHHHhcCCCccc---------ccc------------cc
Q 011334           39 NLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL---------RQR------------TN   97 (488)
Q Consensus        39 ~~p~~~~~~~~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~---------~~~------------~~   97 (488)
                      .+|.....+.-.++.|+-...-.--|+|++|+|.|....+|..|+|.|. |..-         ++.            ..
T Consensus       271 qLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK-PR~eaa~a~~~P~k~~~~~rae~~ea~rsg  349 (500)
T KOG3993|consen  271 QLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK-PRPEAAKAGSPPPKQAVETRAEVQEAERSG  349 (500)
T ss_pred             HHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC-CchhhhhcCCCChhhhhhhhhhhhhccccC
Confidence            3444444444455555554444456999999999999999999999996 2110         000            00


Q ss_pred             cccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC---------------------------------------
Q 011334           98 KDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE---------------------------------------  138 (488)
Q Consensus        98 ~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge---------------------------------------  138 (488)
                      .. .....|.|.+|       +|.|.+...|++|+.+|+..                                       
T Consensus       350 ~d-ss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~v  421 (500)
T KOG3993|consen  350 DD-SSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEV  421 (500)
T ss_pred             Cc-ccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccce
Confidence            00 22347999998       99999999999998877620                                       


Q ss_pred             -------ccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          139 -------KKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       139 -------Kpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                             ....|+.|+-.+..+..--.|.+. +.+.-|.|. |--.|.....|.+|...+|-
T Consensus       422 l~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  422 LYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             eeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence                   012356667666666665666665 666779999 99999999999999988764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.23  E-value=3.2e-07  Score=59.41  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=22.6

Q ss_pred             hhhhhhccccCCccccccccCccccc
Q 011334          127 GIKKHFSRKHGEKKWKCEKCSKKYAV  152 (488)
Q Consensus       127 ~L~~H~r~HtgeKpy~C~~Cgk~F~~  152 (488)
                      +|.+|+++|+++|||+|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999998863

...

>PHA00616 hypothetical protein

Probab=97.79  E-value=8.6e-06  Score=59.16  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=26.4

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcCCCccchhhhc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLAS  201 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~  201 (488)
                      ||+|. ||+.|..++.|.+|++.||+++++.|+.--
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y   36 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFY   36 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence            57787 888888888888888888887777776543

>PHA00732 hypothetical protein

Probab=97.71  E-value=1.8e-05  Score=65.12  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=18.6

Q ss_pred             CCccCChhhhhhhhcc-ccCCccccccccCccccchhhhhhhhcc
Q 011334          119 SRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~-HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ++.|.....|+.|++. |+   ++.|+.|++.|.   .|..|.++
T Consensus         8 gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          8 GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            5555555555555543 32   234555555554   34445443

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.67  E-value=1.6e-05  Score=79.67  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=30.2

Q ss_pred             Cccccccc--cCccccchhhhhhhhcc-c-------------------CCcceecC-CCCccCChHHHHHHHH
Q 011334          138 EKKWKCEK--CSKKYAVQSDWKAHSKT-C-------------------GTREYKCD-CGTLFSRKDSFITHRA  187 (488)
Q Consensus       138 eKpy~C~~--Cgk~F~~ks~L~~H~rt-~-------------------geKpy~C~-CgKsFs~ks~L~~H~r  187 (488)
                      +|||+|++  |.|+|+..-.|+.|+.. |                   ..|||+|+ |+|+|..-..|+-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            35555543  55555555555555443 2                   23777777 7777777777777754

>PHA00616 hypothetical protein

Probab=97.66  E-value=1.3e-05  Score=58.29  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             eeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccccc
Q 011334          105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC  146 (488)
Q Consensus       105 py~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~C  146 (488)
                      ||+|..|       |+.|..+..|.+|++.||+++++.|+.-
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            3555555       6666666666666666666666665543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.60  E-value=2.9e-05  Score=50.25  Aligned_cols=24  Identities=4%  Similarity=-0.086  Sum_probs=15.0

Q ss_pred             HHHHHHHhcCCCccchhhhchhcc
Q 011334          182 FITHRAFCDALAEESTRLASSVVA  205 (488)
Q Consensus       182 L~~H~r~H~~~~~~~C~~C~~sf~  205 (488)
                      |.+|+++|.++++|.|++|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            556666666666666666666654

...

>PHA00732 hypothetical protein

Probab=97.41  E-value=9.3e-05  Score=60.89  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             cccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ||+|..|++.|.....|+.|++. |.  ++.|+ |++.|.   .|..|.+....
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccCC
Confidence            68999999999999999999985 54  46899 999998   58899876543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.26  E-value=0.00015  Score=73.01  Aligned_cols=72  Identities=26%  Similarity=0.560  Sum_probs=46.6

Q ss_pred             CCCceecCc--cccccCChHHHHHHHHh-cCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           60 ATNRFICEI--CNKGFQRDQNLQLHRRG-HNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        60 ~~kpy~C~~--CgK~F~~~~~L~~H~r~-H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      ++|||+|++  |.|.|+....|+-|+.- |.              ..+...-+..     +.-..|            -.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~--------------~~~~~~~p~p-----~~~~~F------------~~  394 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQ--------------NQKLHENPSP-----EKMNIF------------SA  394 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhcccc--------------CcccCCCCCc-----cccccc------------cc
Confidence            469999998  99999999999999764 42              1111111111     001122            23


Q ss_pred             CCccccccccCccccchhhhhhhhcc
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ..|||+|++|+|+|+..-.|+.|++.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             cCCceeccccchhhccCccceecccc
Confidence            46788888888888887778777654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.15  E-value=0.00039  Score=52.81  Aligned_cols=47  Identities=21%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             ccccccCccccchhhhhhhhcc-cC--CcceecC-CCCccCChHHHHHHHHHhc
Q 011334          141 WKCEKCSKKYAVQSDWKAHSKT-CG--TREYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       141 y~C~~Cgk~F~~ks~L~~H~rt-~g--eKpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |.|++|++ ......|..|... |.  .+.+.|+ |...+.  ..|..|+..+|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            66777777 4445667777665 42  2457777 776544  36777776655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.14  E-value=0.00029  Score=43.74  Aligned_cols=22  Identities=41%  Similarity=0.763  Sum_probs=16.3

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      |.|+ |++.|.++..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            6677 777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.12  E-value=0.00027  Score=43.88  Aligned_cols=23  Identities=43%  Similarity=0.902  Sum_probs=21.7

Q ss_pred             eecCccccccCChHHHHHHHHhc
Q 011334           64 FICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      |+|++|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.79  E-value=0.0011  Score=40.81  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=16.0

Q ss_pred             eecC-CCCccCChHHHHHHHHHhc
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |.|+ |++.|.++..|..|++.||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            6777 8888888888888877764

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.66  E-value=0.0017  Score=49.36  Aligned_cols=52  Identities=25%  Similarity=0.519  Sum_probs=30.3

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .|.|+.|++. .....|..|....+.            ...+.+.|++|       ...+.  ..|.+|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~------------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR------------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc------------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            3778888884 445677777655431            23345777777       44332  36666666544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.64  E-value=0.0014  Score=40.35  Aligned_cols=24  Identities=42%  Similarity=0.895  Sum_probs=20.4

Q ss_pred             eecCccccccCChHHHHHHHHhcC
Q 011334           64 FICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |.|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999874

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.61  E-value=0.00099  Score=42.98  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=17.0

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      +|.|+ |++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            46777 7777777777777776664

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.61  E-value=0.0014  Score=54.65  Aligned_cols=67  Identities=13%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHh
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      +..|.....|..|+...++-..-    ....+.....+..+.+..-...+.|. |++.|.....|..|++.+
T Consensus         6 ~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    6 DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            89999999999999876653211    11222244444445444333479999 999999999999999975

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.002  Score=71.48  Aligned_cols=54  Identities=19%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             cccccCccccchhhhhhhhcccCCcceecC----CCCccCChHHHHHHHHHhcCCCcc
Q 011334          142 KCEKCSKKYAVQSDWKAHSKTCGTREYKCD----CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       142 ~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~----CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      .|..|...|.....|.+|++.+.+--.-|+    |+.-|.....|..|-|.+|-..++
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~  241 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEE  241 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCccccc
Confidence            466666666666666666665332223331    445566666666666666555554

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.54  E-value=0.0012  Score=68.23  Aligned_cols=138  Identities=17%  Similarity=0.173  Sum_probs=103.3

Q ss_pred             CceecCccccccCChHHHHHHHH--hcCCCcccccccccccccC--ceeecC--CCcccCCCCCCccCChhhhhhhhccc
Q 011334           62 NRFICEICNKGFQRDQNLQLHRR--GHNLPWKLRQRTNKDVIKK--KVYICP--EKTCVHHEPSRALGDLTGIKKHFSRK  135 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r--~H~~p~~~~~~~~~~~~~~--kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~H  135 (488)
                      .++.|..|.+.|.....|.+|.+  .|.              .+  +++.|+  .|       ++.|.....+.+|...|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~--------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS--------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc--------------cccCCceeeeccCC-------CccccccccccCCcccc
Confidence            47899999999999999999999  676              66  899998  56       99999999999999999


Q ss_pred             cCCccccccc--cCccccchhhhhhh----hc-c-cCCcceecC---CCCccCChHHHHHHHHHhcCCC--ccchhhhch
Q 011334          136 HGEKKWKCEK--CSKKYAVQSDWKAH----SK-T-CGTREYKCD---CGTLFSRKDSFITHRAFCDALA--EESTRLASS  202 (488)
Q Consensus       136 tgeKpy~C~~--Cgk~F~~ks~L~~H----~r-t-~geKpy~C~---CgKsFs~ks~L~~H~r~H~~~~--~~~C~~C~~  202 (488)
                      ++.++++|..  |.+.+.....-..+    .. . +..+.+.|.   |-+.+.+...+..|...|-...  .+.+..|.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (467)
T COG5048         347 TSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSK  426 (467)
T ss_pred             cCCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchh
Confidence            9988888744  66665555442111    11 1 455677775   8888888888888888876665  457778888


Q ss_pred             hccccCCCcccccCCCCC
Q 011334          203 VVAAASNLNFRTDHTVNL  220 (488)
Q Consensus       203 sf~~~s~L~~~~~~~~~~  220 (488)
                      .+.....+..+...+...
T Consensus       427 ~~~~~~~~~~~~~~~~~~  444 (467)
T COG5048         427 SFNRHYNLIPHKKIHTNH  444 (467)
T ss_pred             hccCcccccccccccccC
Confidence            887777776555554433

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.39  E-value=0.0021  Score=41.43  Aligned_cols=25  Identities=36%  Similarity=0.700  Sum_probs=23.6

Q ss_pred             ceecCccccccCChHHHHHHHHhcC
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +|+|.+|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999999885

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.36  E-value=0.0017  Score=54.24  Aligned_cols=72  Identities=18%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             ecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccc
Q 011334           65 ICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCE  144 (488)
Q Consensus        65 ~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~  144 (488)
                      +|..|+..|.....|..|+...+.              -.   .+.        ...+.....+..+.+... ...|.|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~--------------~~---~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~   54 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHG--------------FD---IPD--------QKYLVDPNRLLNYLRKKV-KESFRCP   54 (100)
T ss_dssp             --------------------------------------------------------------------------SSEEBS
T ss_pred             Cccccccccccccccccccccccc--------------cc---ccc--------cccccccccccccccccc-CCCCCCC
Confidence            599999999999999999966541              00   000        111222333333333222 2268999


Q ss_pred             ccCccccchhhhhhhhcc
Q 011334          145 KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       145 ~Cgk~F~~ks~L~~H~rt  162 (488)
                      .|++.|.....|..|++.
T Consensus        55 ~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   55 YCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SSS-EESSHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHcC
Confidence            999999999999999987

>smart00355 ZnF_C2H2 zinc finger

Probab=95.40  E-value=0.013  Score=36.27  Aligned_cols=22  Identities=32%  Similarity=0.803  Sum_probs=15.8

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      |.|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            4677 777777777777777755

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.40  E-value=0.0085  Score=44.87  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=13.9

Q ss_pred             CCccccccccCccccchhhhhhhhcc-cCCcc
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTRE  167 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt-~geKp  167 (488)
                      .+.|-.|++|+..+.+..+|++|+.. |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34555566666655555556555554 55443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.36  E-value=0.011  Score=36.56  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             eecCccccccCChHHHHHHHHhcC
Q 011334           64 FICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999874

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.32  E-value=0.0083  Score=61.89  Aligned_cols=148  Identities=18%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCchhHhhcCcc--ccCCC--CceecC--ccccccCChHHHHHHHHhcCCCcccccccccccccCceeec
Q 011334           35 KKKRNLPGTPDPDAEVIALSPK--TLMAT--NRFICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYIC  108 (488)
Q Consensus        35 k~k~~~p~~~~~~~~~l~~~~k--~~~~~--kpy~C~--~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C  108 (488)
                      ...+..+.........+..+..  .|..+  +++.|+  .|++.|.+...+..|...|.              ..+++.|
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT--------------SISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc--------------CCCcccc
Confidence            3555666666666677777777  78888  999999  79999999999999999997              3333333


Q ss_pred             CCCcccCCCCCCccCChhh-----hhhhhccccCCcccccc--ccCccccchhhhhhhhccc-CCc--ceecC-CCCccC
Q 011334          109 PEKTCVHHEPSRALGDLTG-----IKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKTC-GTR--EYKCD-CGTLFS  177 (488)
Q Consensus       109 ~~C~C~~~~c~k~F~~~s~-----L~~H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt~-geK--py~C~-CgKsFs  177 (488)
                      ....|     .+.+.....     ...+.......+.+.|.  .|-..+.....+..|...+ ..+  .+.|. |.+.|.
T Consensus       355 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (467)
T COG5048         355 KLLNS-----SSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFN  429 (467)
T ss_pred             ccccC-----ccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhcc
Confidence            33222     222221111     11111111223344443  2555566666666555542 222  23334 777777


Q ss_pred             ChHHHHHHHHHhcCCCccchhhhc
Q 011334          178 RKDSFITHRAFCDALAEESTRLAS  201 (488)
Q Consensus       178 ~ks~L~~H~r~H~~~~~~~C~~C~  201 (488)
                      ....+..|++.|....+..|..+.
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~  453 (467)
T COG5048         430 RHYNLIPHKKIHTNHAPLLCSILK  453 (467)
T ss_pred             CcccccccccccccCCceeecccc
Confidence            777777777666665555554443

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.31  E-value=0.009  Score=70.10  Aligned_cols=122  Identities=17%  Similarity=0.230  Sum_probs=72.4

Q ss_pred             CCceecCccccccCChHHHHHHHHh-cCCCccccc----------ccccccccCceeecCCCcccCCCCCCccCChhhhh
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRG-HNLPWKLRQ----------RTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIK  129 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~-H~~p~~~~~----------~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~  129 (488)
                      .|.|+|+.|+..|+....|..|||. |.......+          +-.....+.++|.|..|       ...+.....|.
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C-------~~stttng~Ls  535 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC-------NYSTTTNGNLS  535 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee-------eeeeecchHHH
Confidence            4789999999999999999999998 432111100          00011134566677766       77777777777


Q ss_pred             hhhcc--cc-----------------------------------C------CccccccccCccccchhhhhhhhcc-cCC
Q 011334          130 KHFSR--KH-----------------------------------G------EKKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       130 ~H~r~--Ht-----------------------------------g------eKpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      +|+..  |.                                   +      +-+|.|.+|++.-....+|+.|+.. +.-
T Consensus       536 ihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s  615 (1406)
T KOG1146|consen  536 IHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSS  615 (1406)
T ss_pred             HHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCC
Confidence            77642  11                                   0      1135666666666666666666655 222


Q ss_pred             c-ceecC-CCCccCChHHHHHHHHHh
Q 011334          166 R-EYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       166 K-py~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      . |.-|. |.-.+.....+..|.+.+
T Consensus       616 ~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  616 SPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             CChHHHhhhcchhhccccccCcCCCC
Confidence            2 35555 665555555555544443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.19  E-value=0.022  Score=58.31  Aligned_cols=108  Identities=16%  Similarity=0.283  Sum_probs=68.4

Q ss_pred             eecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCcc------CChhhhhhhhccc
Q 011334           64 FICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRAL------GDLTGIKKHFSRK  135 (488)
Q Consensus        64 y~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F------~~~s~L~~H~r~H  135 (488)
                      |.|+.  |......-..|+.|.+..+                ..+.|.+|--  +  .+.|      .+...|+.|...-
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H----------------~~~~C~~C~~--n--Kk~F~~E~~lF~~~~Lr~H~~~G  211 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH----------------GFVLCSECIG--N--KKDFWNEIRLFRSSTLRDHKNGG  211 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc----------------CcEEhHhhhc--C--cccCccceeeeecccccccccCC
Confidence            77875  6655555677888887654                1245665510  0  2223      3445566665543


Q ss_pred             cCCcc----ccccccCccccchhhhhhhhcccCCcceecC-CC----CccCChHHHHHHHHHhcC
Q 011334          136 HGEKK----WKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CG----TLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       136 tgeKp----y~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-Cg----KsFs~ks~L~~H~r~H~~  191 (488)
                      ..+.-    -.|..|.+.|..-..|.+|+|...|+-|.|+ -+    .-|.....|..|.+.-|-
T Consensus       212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy  276 (493)
T COG5236         212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHY  276 (493)
T ss_pred             ccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCce
Confidence            32212    3588899999999999999888666777776 33    347778888888775443

>PRK04860 hypothetical protein; Provisional

Probab=95.11  E-value=0.0092  Score=55.63  Aligned_cols=34  Identities=26%  Similarity=0.791  Sum_probs=17.4

Q ss_pred             cccccccCccccchhhhhhhhcc-cCCcceecC-CCCccC
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFS  177 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs  177 (488)
                      +|.|. |++   ....+++|.++ .++++|.|. |++.|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            45554 554   44445555555 445555555 555554

>PRK04860 hypothetical protein; Provisional

Probab=94.69  E-value=0.012  Score=54.86  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             ceecCCCCccCChHHHHHHHHHhcCCCccchhhhchhcc
Q 011334          167 EYKCDCGTLFSRKDSFITHRAFCDALAEESTRLASSVVA  205 (488)
Q Consensus       167 py~C~CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~  205 (488)
                      +|.|.|++   ....+++|.++|.++++|.|..|+..|.
T Consensus       119 ~Y~C~C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCKCQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcCCCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            45555554   4444555555555555555555555443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.41  E-value=0.039  Score=41.41  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=23.5

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHhcCCCc
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFCDALAE  194 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~  194 (488)
                      -.+.|-.|. |+..+....+|++|+..+|+.++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            356899999 99999999999999999998775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=94.38  E-value=0.053  Score=63.96  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      ..+.|+|+.|       ++.|+....|..|+|..|
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskh  489 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKH  489 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccc
Confidence            3478899998       899999999999999743

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.02  E-value=0.031  Score=35.15  Aligned_cols=23  Identities=43%  Similarity=0.986  Sum_probs=21.5

Q ss_pred             eecCccccccCChHHHHHHHHhc
Q 011334           64 FICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      |.|.+|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999875

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.94  E-value=0.058  Score=33.89  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=13.7

Q ss_pred             eecC-CCCccCChHHHHHHHHH
Q 011334          168 YKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      |.|+ |++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566 66666666666666654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=92.90  E-value=0.094  Score=32.75  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=14.7

Q ss_pred             eecC-CCCccCChHHHHHHHHHhc
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |+|. |..... +..|.+|++.||
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            6777 777776 777777777765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.11  E-value=0.091  Score=33.92  Aligned_cols=22  Identities=27%  Similarity=0.738  Sum_probs=17.2

Q ss_pred             ccccccCccccchhhhhhhhcc
Q 011334          141 WKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       141 y~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.24  E-value=0.1  Score=53.56  Aligned_cols=88  Identities=25%  Similarity=0.513  Sum_probs=61.9

Q ss_pred             eecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccC---------ccccchhhhhhhhcc-cCC---c-ceecC
Q 011334          106 YICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCS---------KKYAVQSDWKAHSKT-CGT---R-EYKCD  171 (488)
Q Consensus       106 y~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cg---------k~F~~ks~L~~H~rt-~ge---K-py~C~  171 (488)
                      |.|+.-.|     .+.......|+.|.+..|+.  +-|.+|-         ....++..|+.|... -.+   | .-.|.
T Consensus       152 F~CP~skc-----~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~  224 (493)
T COG5236         152 FKCPKSKC-----HRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI  224 (493)
T ss_pred             hcCCchhh-----hhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence            56876544     66667788999999976653  5676663         233456778888765 211   1 23699


Q ss_pred             -CCCccCChHHHHHHHHHhcCCCccchhhhchhc
Q 011334          172 -CGTLFSRKDSFITHRAFCDALAEESTRLASSVV  204 (488)
Q Consensus       172 -CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf  204 (488)
                       |.+.|..-+.|.+|+|.-|    .+|.+|++.-
T Consensus       225 FC~~~FYdDDEL~~HcR~~H----E~ChICD~v~  254 (493)
T COG5236         225 FCKIYFYDDDELRRHCRLRH----EACHICDMVG  254 (493)
T ss_pred             hccceecChHHHHHHHHhhh----hhhhhhhccC
Confidence             9999999999999998643    4688887664

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.75  E-value=0.065  Score=34.60  Aligned_cols=23  Identities=30%  Similarity=0.806  Sum_probs=20.8

Q ss_pred             eecCccccccCChHHHHHHHHhc
Q 011334           64 FICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      |.|..|++.|.+...|..|++..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999998753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.71  E-value=0.64  Score=52.18  Aligned_cols=120  Identities=18%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             eecCccccccCChHHHHHHHHhcCCCcccccccccc--------------c--------ccCc----eeecCCCcccCCC
Q 011334           64 FICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKD--------------V--------IKKK----VYICPEKTCVHHE  117 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~--------------~--------~~~k----py~C~~C~C~~~~  117 (488)
                      ..|..| ..|.....|+.|++.-|.-..|..+....              .        ..++    --.|..|      
T Consensus       116 ~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C------  188 (669)
T KOG2231|consen  116 KECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFC------  188 (669)
T ss_pred             CCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhh------
Confidence            478899 88899999999985433222222111100              0        0000    0234444      


Q ss_pred             CCCccCChhhhhhhhccccCCccccccccC------ccccchhhhhhhhcccCCcceecC---CC-Ccc----CChHHHH
Q 011334          118 PSRALGDLTGIKKHFSRKHGEKKWKCEKCS------KKYAVQSDWKAHSKTCGTREYKCD---CG-TLF----SRKDSFI  183 (488)
Q Consensus       118 c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cg------k~F~~ks~L~~H~rt~geKpy~C~---Cg-KsF----s~ks~L~  183 (488)
                       ...|.....|.+|++.++    |.|..|.      .-|....+|..|.|..   .|.|+   |. +.|    .....|+
T Consensus       189 -~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~---HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  189 -HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKG---HFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             -hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhc---CccccccccccceeeehhHHHHHHH
Confidence             899999999999999877    6777774      5577788899998871   25664   43 223    3344555


Q ss_pred             HHHHHhcCCCccchh
Q 011334          184 THRAFCDALAEESTR  198 (488)
Q Consensus       184 ~H~r~H~~~~~~~C~  198 (488)
                      .|.+.+.-++-|.|.
T Consensus       261 ~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  261 AHNRFIQHEKCYICR  275 (669)
T ss_pred             hhccccchheeccCC
Confidence            555444445555553

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.67  E-value=0.21  Score=31.13  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=18.7

Q ss_pred             eecCccccccCChHHHHHHHHhcC
Q 011334           64 FICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |+|+.|..... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999888 899999998864

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=88.62  E-value=0.37  Score=30.84  Aligned_cols=20  Identities=35%  Similarity=0.918  Sum_probs=13.2

Q ss_pred             ecC-CCCccCChHHHHHHHHHh
Q 011334          169 KCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       169 ~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      .|. ||+.| ..+.|.+|++++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHhc
Confidence            566 77777 566677776654

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=88.14  E-value=0.15  Score=49.98  Aligned_cols=37  Identities=30%  Similarity=0.493  Sum_probs=26.1

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhh
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH  159 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H  159 (488)
                      ++.|-+..-|.+|++..|    |+|.+|.|...+--.|..|
T Consensus        17 nrefddekiliqhqkakh----fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   17 NREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceee
Confidence            777777777777766533    7787777776666666666

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=86.85  E-value=0.67  Score=47.73  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=22.4

Q ss_pred             CceecCccccccCChHHHHHHHHhc
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      .+++|-.|.|.|..+..|+.|||.-
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhc
Confidence            3689999999999999999999763

>smart00451 ZnF_U1 U1-like zinc finger

Probab=86.00  E-value=0.59  Score=31.55  Aligned_cols=24  Identities=29%  Similarity=0.801  Sum_probs=21.4

Q ss_pred             ceecCccccccCChHHHHHHHHhc
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      +|.|++|++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            589999999999999999998653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=84.76  E-value=0.73  Score=31.10  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=17.5

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      +|.|+ |++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57788 88888888888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=83.19  E-value=0.36  Score=47.36  Aligned_cols=44  Identities=23%  Similarity=0.625  Sum_probs=35.8

Q ss_pred             CccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHH
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITH  185 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H  185 (488)
                      .||| |.+|.+.|....-|.+|++.   |.|+|. |.|..-+--.|..|
T Consensus         9 ~kpw-cwycnrefddekiliqhqka---khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceee
Confidence            4665 99999999999999999866   669999 99877666666555

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=81.77  E-value=1.2  Score=28.50  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=17.6

Q ss_pred             eecCccccccCChHHHHHHHHh
Q 011334           64 FICEICNKGFQRDQNLQLHRRG   85 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~   85 (488)
                      ..|+.||+.| ....|.+|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 56789999764

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.68  E-value=0.48  Score=45.55  Aligned_cols=82  Identities=20%  Similarity=0.434  Sum_probs=65.1

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-c----------CCcceec
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-C----------GTREYKC  170 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~----------geKpy~C  170 (488)
                      +...+.|++-+|     -+.|.....+..|..+-|+   -.|..|.+.|.+..-|..|+.. |          |..-|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            455688998877     7888888888888765554   3799999999999999999764 4          4445999


Q ss_pred             C---CCCccCChHHHHHHHHHhcC
Q 011334          171 D---CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       171 ~---CgKsFs~ks~L~~H~r~H~~  191 (488)
                      -   |+..|.+...-+.|+-.-|.
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhcc
Confidence            4   99999999999999865443

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.28  E-value=0.45  Score=45.75  Aligned_cols=79  Identities=23%  Similarity=0.435  Sum_probs=62.5

Q ss_pred             CCCceecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc-
Q 011334           60 ATNRFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-  136 (488)
Q Consensus        60 ~~kpy~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht-  136 (488)
                      ..+.|.|.+  |-..|.....+..|..+-+                 .-.|.+|       .|.|.+..-|..|+.--| 
T Consensus        76 ~~~~~~cqvagc~~~~d~lD~~E~hY~~~h-----------------~~sCs~C-------~r~~Pt~hLLd~HI~E~HD  131 (253)
T KOG4173|consen   76 RVPAFACQVAGCCQVFDALDDYEHHYHTLH-----------------GNSCSFC-------KRAFPTGHLLDAHILEWHD  131 (253)
T ss_pred             ccccccccccchHHHHhhhhhHHHhhhhcc-----------------cchhHHH-------HHhCCchhhhhHHHHHHHH
Confidence            345688988  8888988888888875543                 1368887       899999999999986433 


Q ss_pred             ---------CCccccc--cccCccccchhhhhhhhcc
Q 011334          137 ---------GEKKWKC--EKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       137 ---------geKpy~C--~~Cgk~F~~ks~L~~H~rt  162 (488)
                               |.-.|+|  +.|+..|.+..+.++|+-.
T Consensus       132 s~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  132 SLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence                     5557999  5699999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	7e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-05
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	7e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)

Query: 64  FICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRA 121
           F+C    CNK + +  +LQ+H R H         T +     K Y C  K C      R 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH---------TGE-----KPYQCDFKDC-----ERR 47

Query: 122 LGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC---DCGTLF 176
                 +K+H  R+H G K ++C+ C +K++     K H++T  G + + C    C   F
Sbjct: 48  FSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106

Query: 177 SRKDSFITH 185
           +R D  + H
Sbjct: 107 ARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHS 160
           + ++C    C     ++    L+ ++ H SRKH GEK ++C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 161 KT-CGTREYKCD-CGTLFSRKDSFITHR 186
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 21/127 (16%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
            + C++ F   + L  H                    +K ++C    C      R     
Sbjct: 6   WDGCSQEFDSQEQLVHHINSE------HIHGE-----RKEFVCHWGGCS--RELRPFKAQ 52

Query: 126 TGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKC---DCGTLFSR 178
             +  H  R+H GEK  KC  E C K Y+   + K H ++  G + Y C    C   FS 
Sbjct: 53  YMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111

Query: 179 KDSFITH 185
                 H
Sbjct: 112 ASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 22/97 (22%)

Query: 69  CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGI 128
           C K + R +NL+ H R H         T      +K Y+C  + C     S+A  + +  
Sbjct: 75  CRKSYSRLENLKTHLRSH---------TG-----EKPYMCEHEGC-----SKAFSNASDR 115

Query: 129 KKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHSKT 162
            KH +R H  EK + C+   C+K+Y   S  + H KT
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 160
           ++ +   CP K C     ++   D + ++KH    HG +   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 161 KT-CGTREYKC---DCGTLFSRKDSFITH 185
               G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 30/127 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
            + C K F+ +  ++ H   H                 +V++C E  C      +A  + 
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG---------------PRVHVCAE--C-----GKAFVES 47

Query: 126 TGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKC---DCGTLFSR 178
           + +K+H    H GEK ++C  E C K++++  + + H +   G R Y C    C   F++
Sbjct: 48  SKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 179 KDSFITH 185
             +  +H
Sbjct: 107 STNLKSH 113

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 32/132 (24%), Positives = 42/132 (31%), Gaps = 29/132 (21%)

Query: 64  FICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRA 121
           F C+   C KGF    +L  H   H         T      +K + C    C        
Sbjct: 43  FPCKEEGCEKGFTSLHHLTRHSLTH---------TG-----EKNFTCDSDGC-----DLR 83

Query: 122 LGDLTGIKKHFSRKHGEKKW--KC--EKCSKKYAVQSDWKAHSKT-CGTREYKC---DCG 173
                 +KKHF+R H  K     C  E C K +   +  K H  +      Y+C    C 
Sbjct: 84  FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143

Query: 174 TLFSRKDSFITH 185
             FS       H
Sbjct: 144 KRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 33/135 (24%)

Query: 63  RFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSR 120
           R+IC    C   + ++  LQ H   H         T      +K + C E+ C      +
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH---------TG-----EKPFPCKEEGC-----EK 52

Query: 121 ALGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKTCGTRE----YKC--- 170
               L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   
Sbjct: 53  GFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFE 110

Query: 171 DCGTLFSRKDSFITH 185
           +CG  F + +    H
Sbjct: 111 NCGKAFKKHNQLKVH 125

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT 162
           + Y CP ++C      R       + +H  R H G+K ++C  C + ++       H +T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 163 -CGTREYKCD-CGTLFSRKDSFITHR 186
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 25/102 (24%)

Query: 64  FICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRA 121
           + C +  C++ F +  +L  H R H         T +     K + C    C      R 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIH---------TGQ-----KPFQCRI--C-----MRN 43

Query: 122 LGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT 162
                 +  H  R H GEK + C+ C +K+A   + K H+K 
Sbjct: 44  FSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKTC---GTREYKC-DCGTLFSRKDSFITHR 186
               GE  ++C+ CS+ Y   S++  H  T      + Y C  C   F+RKD+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRA 187
                    KC +CS   + ++  + H +  C  R +KC+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.3 bits (111), Expect = 6e-07
 Identities = 24/125 (19%), Positives = 32/125 (25%), Gaps = 50/125 (40%)

Query: 64  FICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALG 123
           F C IC + F R  +L  H R H         T                           
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH---------T--------------------------- 27

Query: 124 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSF 182
                        GEK + C+ C +K+A   + K H           D    L S+    
Sbjct: 28  -------------GEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHL 74

Query: 183 ITHRA 187
               A
Sbjct: 75  ENEVA 79

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 129 KKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKTCGTRE----YKCD-CGTLFSRKDSF 182
                R H GEK ++C  C  ++      K H       E    + C  C T+ +RK   
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDL 61

Query: 183 ITH 185
             H
Sbjct: 62  GVH 64

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 23/102 (22%)

Query: 64  FICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRA 121
             C+   C K + +  +L+ H R H                +K Y C  + C        
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT--------------GEKPYKCTWEGC-----DWR 56

Query: 122 LGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT 162
                 + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 57  FARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 95  RTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYA 151
            +  D+ K++++ C    C     ++     + +K H  R H GEK +KC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 152 VQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHR 186
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 137 GEKKWKCEKCSKKYAVQSDWKAHSKT----CGTREYKCD-CGTLFSRKDSFITHR 186
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 46/99 (46%)

Query: 64  FICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALG 123
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 124 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT 162
                    +      ++ CE C K++       AH   
Sbjct: 31  ---------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
            E C K F++   L++H+  H         T      +  Y CP + C      +     
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH---------TQ-----QLPYECPHEGC-----DKRFSLP 46

Query: 126 TGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSK 161
           + +K+H  + H G    K + CS      + +  H  
Sbjct: 47  SRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSK 161
           +Y+C  + C      +A      +K H    H  +  ++C  E C K++++ S  K H K
Sbjct: 1   MYVCHFENC-----GKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

Query: 162 T-CGTREYKCD-CGTLFSRKDSFITHR 186
              G    K D C  +      ++ H 
Sbjct: 55  VHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.9 bits (110), Expect = 5e-06
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 31/126 (24%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALG 123
           C  C K F R  +L  H+R H         T      +K Y CPE  K+           
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH---------T-----GEKPYKCPECGKSFSDK------K 63

Query: 124 DLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKTCGTRE--YKC-DCGTLFSRK 179
           DLT   +H  R H GEK +KC +C K ++ +++ +AH +T  T E  Y C +CG  FS+ 
Sbjct: 64  DLT---RH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQL 118

Query: 180 DSFITH 185
                H
Sbjct: 119 AHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 31/127 (24%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALG 123
           C  C K F   ++L  H+R H                +K Y CPE  K+           
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT--------------GEKPYKCPECGKSFSQR------A 91

Query: 124 DLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKTCGTRE--YKC-DCGTLFSRK 179
           +L     H  R H GEK + C +C K ++  +  +AH +T  T E  YKC +CG  FSR+
Sbjct: 92  NLR---AH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSRE 146

Query: 180 DSFITHR 186
           D+  TH+
Sbjct: 147 DNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 29/125 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALG 123
           C  C K F +  NL+ H+R H         T +     K Y CPE  K+           
Sbjct: 80  CPECGKSFSQRANLRAHQRTH---------TGE-----KPYACPECGKSFSQL------A 119

Query: 124 DLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKD 180
            L     H  R H GEK +KC +C K ++ + +   H +T  G + YKC +CG  FSR+D
Sbjct: 120 HLR---AH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175

Query: 181 SFITH 185
           +   H
Sbjct: 176 ALNVH 180

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 64  FICEICNKGFQRDQNLQLHRRGHNL--PWKLRQRTNKDVIKKKVYICPEKTCVHHEPS-R 120
              + C++ F     L  H    ++  P            ++  ++C  + C     S +
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGP------------EQNNHVCYWEECPREGKSFK 73

Query: 121 ALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKC---DCG 173
           A   L     H  R H GEK + C    C K +A   + K H +T  G + +KC    C 
Sbjct: 74  AKYKL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129

Query: 174 TLFSRKDSFITH 185
             F+       H
Sbjct: 130 RRFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 24/110 (21%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
           C    K F+    L  H R H         T +     K + CP   C      +     
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH---------TGE-----KPFPCPFPGC-----GKIFARS 105

Query: 126 TGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKCD 171
             +K H  R H GEK +KC  E C +++A  SD K H       +     
Sbjct: 106 ENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 46/135 (34%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
           C  C+K F     L++H R H         T +     K + CP+  C            
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKH---------TGE-----KPFECPK--C------------ 41

Query: 126 TGIKKHFSRK-----H--------GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC- 170
            G  K + RK     H         E+ + C  C + +  + + + H  +  G   YKC 
Sbjct: 42  -G--KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCS 98

Query: 171 DCGTLFSRKDSFITH 185
            C   F +K    +H
Sbjct: 99  SCSQQFMQKKDLQSH 113

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFITHR 186
                +K +KC++C   +  + +  +H     G + Y+C  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 89  PWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH-GEKKWKCEKCS 147
           P  +    N  V K + Y CP ++C      R       + +H  R H G+K ++C  C 
Sbjct: 3   PHPMNNLLNYVVPKMRPYACPVESC-----DRRFSRSDELTRHI-RIHTGQKPFQCRICM 56

Query: 148 KKYAVQSDWKAHSKT 162
           + ++       H +T
Sbjct: 57  RNFSRSDHLTTHIRT 71

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 12/69 (17%)

Query: 130 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFS 177
           K FSRK         H G K +KC+ C    A  S    H +     R +KC  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 178 RKDSFITHR 186
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 137 GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFITHR 186
                KCE C K ++ +   K H +   G + YKC  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD---CGTLFSRKDSFITHR 186
           ++          C K Y   S  KAH +T  G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDL 125
              C K + +  +L+ H R H         T +     K Y C    C            
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH---------TGE-----KPYHCDWDGC-----GWKFARS 50

Query: 126 TGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT 162
             + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 51  DELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 129 KKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFI 183
           K H  R H GEK + C  + C  K+A   +   H +   G R ++C  C   FSR D   
Sbjct: 24  KAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82

Query: 184 THR 186
            H 
Sbjct: 83  LHM 85

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 127 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFI 183
           G     S  H GEK + C +C K ++  S    H +   G + YKC +CG  FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 184 THR 186
            H+
Sbjct: 60  NHQ 62

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFITH 185
            +    +++KC++C K ++  SD   H +T  G + YKC +CG  F ++   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 125 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFI 183
            +G   H   +   +   C+ C  +       K H   CG R   C  CG     KD   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 184 THRAFCD 190
           TH   C 
Sbjct: 60  THPEVCG 66

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 130 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFS 177
           +HF++          H  E+ + C+ C K +  Q   + H       + +KC +CG  F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 178 RKDSFITHR 186
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFITHR 186
                +K++ C+ C + +    +   H +T    R Y C  C   F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC-DCGTLFSRKDSFITH 185
             H   + + C+ C K++  +SD K H+    G + +KC  CG  FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKT-----CGTREYKC-DCGTLFSRKDSFITH 185
           R H GEK + C  C K +  +     H K           + C  CG  F+R+++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 126 TGIKKHFSRKHGEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKCD---CGTLFSRK 179
           +G           +   C    C K Y   S  KAH++T  G + + C    C   F+R 
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62

Query: 180 DSFITHR 186
           D    HR
Sbjct: 63  DELSRHR 69

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 140 KWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRA 187
           K+ CE+C  +    S  K H +T    R Y C  C   F  K +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.89
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.78
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.74
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.65
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.64
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.63
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.6
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.59
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.56
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.55
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.52
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.48
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.47
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.45
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.45
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.44
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.41
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.4
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.38
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.37
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.36
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.36
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.34
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.34
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.33
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.28
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.28
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.24
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.23
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.17
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.17
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.15
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.14
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.1
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.03
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.01
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.0
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.98
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.96
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.94
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.94
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.94
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.94
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.89
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.88
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.85
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.83
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.83
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.82
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.82
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.82
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.81
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.8
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.8
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.8
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.8
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.78
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.78
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.78
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.76
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.76
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.73
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.72
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.71
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.69
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.67
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.66
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.65
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.65
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.63
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.63
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.62
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.59
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.59
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.59
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.59
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.58
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.57
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.56
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.56
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.56
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.56
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.54
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.54
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.53
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.5
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.5
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.42
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.36
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.33
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.31
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.26
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.25
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.18
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.16
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.15
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.1
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.04
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.03
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.95
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.92
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.92
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.88
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.86
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.85
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.85
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.84
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.83
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.83
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.83
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.8
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.8
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.79
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.79
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.79
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.77
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.74
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.74
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.71
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.9
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.68
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.86
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.64
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.64
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.6
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.6
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.76
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.56
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.52
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.65
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.5
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.47
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.41
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.39
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.5
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.34
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.34
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.25
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.22
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.17
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.24
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.1
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.02
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.8
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.49
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.48
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.3
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.47
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.4
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.06
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.02
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.71
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	89.87
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	84.01

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=3.5e-28  Score=226.33  Aligned_cols=164  Identities=24%  Similarity=0.471  Sum_probs=143.6

Q ss_pred             cCCCCCCCCCCCCchhHhhcCccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcc
Q 011334           34 SKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTC  113 (488)
Q Consensus        34 ~k~k~~~p~~~~~~~~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C  113 (488)
                      .+..+..|+..+.....+..|.+.|.++++|.|++|++.|.....|..|++.|.              ++++|.|++|  
T Consensus        20 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C--   83 (190)
T 2i13_A           20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT--------------GEKPYKCPEC--   83 (190)
T ss_dssp             -----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH--------------CCCCEECTTT--
T ss_pred             CCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC--------------CCCCccCccc--
Confidence            457889999999999999999999999999999999999999999999999996              7889999998  


Q ss_pred             cCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          114 VHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       114 ~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                           ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|..|+++|++
T Consensus        84 -----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           84 -----GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             -----CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             -----CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence                 99999999999999999999999999999999999999999999 799999999 99999999999999999999


Q ss_pred             CCccchhhhchhccccCCCcccccCCC
Q 011334          192 LAEESTRLASSVVAAASNLNFRTDHTV  218 (488)
Q Consensus       192 ~~~~~C~~C~~sf~~~s~L~~~~~~~~  218 (488)
                      +++|.|.+|++.|.....|..|...+.
T Consensus       159 ~~~~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          159 EKPYKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTTC-
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHhcC
Confidence            999999999999999999998776543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.91  E-value=7.9e-26  Score=210.40  Aligned_cols=147  Identities=24%  Similarity=0.502  Sum_probs=116.3

Q ss_pred             HhhcCccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhh
Q 011334           50 VIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIK  129 (488)
Q Consensus        50 ~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~  129 (488)
                      .+..+...+.++++|.|++|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|.
T Consensus         8 ~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~   66 (190)
T 2i13_A            8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT--------------GEKPYKCPEC-------GKSFSDKKDLT   66 (190)
T ss_dssp             -----------------------CCSSHHHHHGGGCC-----------------CCEECTTT-------CCEESSHHHHH
T ss_pred             cchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcC--------------CCCCccCCCc-------CchhCCHHHHH
Confidence            34456667788899999999999999999999999997              7889999998       99999999999


Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhhchhcccc
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAA  207 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~  207 (488)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+...|..|+++|+++++|.|.+|++.|...
T Consensus        67 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  146 (190)
T 2i13_A           67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE  146 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred             HHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCH
Confidence            999999999999999999999999999999999 789999999 999999999999999999999999999999999999


Q ss_pred             CCCcccccCC
Q 011334          208 SNLNFRTDHT  217 (488)
Q Consensus       208 s~L~~~~~~~  217 (488)
                      ..|..|....
T Consensus       147 ~~L~~H~~~H  156 (190)
T 2i13_A          147 DNLHTHQRTH  156 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998776543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=1.9e-24  Score=201.05  Aligned_cols=161  Identities=19%  Similarity=0.258  Sum_probs=140.8

Q ss_pred             ccCCCC--CCCCCCCCchhHhhcCccccCCCCceec--CccccccCChHHHHHHHHhcCCCcccccccccccccCceeec
Q 011334           33 ASKKKR--NLPGTPDPDAEVIALSPKTLMATNRFIC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYIC  108 (488)
Q Consensus        33 ~~k~k~--~~p~~~~~~~~~l~~~~k~~~~~kpy~C--~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C  108 (488)
                      ..+..+  ..|+..+.....+..|.+.|.++++|.|  ++|++.|.....|..|+++|.              ++++|.|
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C   75 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT--------------GEKNFTC   75 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT--------------TCCCEEC
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc--------------CCCceeC
Confidence            345666  6799999999999999999999999999  889999999999999999996              7889999


Q ss_pred             C--CCcccCCCCCCccCChhhhhhhh-ccc-cCCccccc--cccCccccchhhhhhhhcc-cCCcceec--C-CCCccCC
Q 011334          109 P--EKTCVHHEPSRALGDLTGIKKHF-SRK-HGEKKWKC--EKCSKKYAVQSDWKAHSKT-CGTREYKC--D-CGTLFSR  178 (488)
Q Consensus       109 ~--~C~C~~~~c~k~F~~~s~L~~H~-r~H-tgeKpy~C--~~Cgk~F~~ks~L~~H~rt-~geKpy~C--~-CgKsFs~  178 (488)
                      +  .|       ++.|.....|.+|+ +.| .++++|+|  +.|++.|.....|..|+++ +++++|.|  + |++.|.+
T Consensus        76 ~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~  148 (190)
T 1tf6_A           76 DSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL  148 (190)
T ss_dssp             CSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS
T ss_pred             CCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC
Confidence            8  66       99999999999999 666 46789999  8899999999999999998 68899999  5 9999999


Q ss_pred             hHHHHHHHHHhcCCCccchhh---hchhccccCCCcccccCC
Q 011334          179 KDSFITHRAFCDALAEESTRL---ASSVVAAASNLNFRTDHT  217 (488)
Q Consensus       179 ks~L~~H~r~H~~~~~~~C~~---C~~sf~~~s~L~~~~~~~  217 (488)
                      +..|..|+++|++   +.|.+   |++.|.....|..|....
T Consensus       149 ~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h  187 (190)
T 1tf6_A          149 PSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC  187 (190)
T ss_dssp             HHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhh
Confidence            9999999999887   88888   999999988888776543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=3.9e-24  Score=191.82  Aligned_cols=140  Identities=22%  Similarity=0.408  Sum_probs=127.7

Q ss_pred             CCceecCccccccCChHHHHHHHH---hcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRR---GHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r---~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      +.+|.|++|++.|.+...|..|++   +|.              ++++|.|++|+|  ..|++.|.....|.+|+++|++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~--------------~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~   64 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG--------------ERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTG   64 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS--------------CSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC--------------CCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCC
Confidence            357999999999999999999998   454              788999998754  4567999999999999999999


Q ss_pred             Cccccccc--cCccccchhhhhhhhcc-cCCcceecC---CCCccCChHHHHHHH-HHhcCCCccchhh--hchhccccC
Q 011334          138 EKKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKCD---CGTLFSRKDSFITHR-AFCDALAEESTRL--ASSVVAAAS  208 (488)
Q Consensus       138 eKpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C~---CgKsFs~ks~L~~H~-r~H~~~~~~~C~~--C~~sf~~~s  208 (488)
                      ++||+|++  |++.|.....|.+|+++ +++++|.|+   |++.|.++..|..|+ ++|.++++|.|.+  |++.|....
T Consensus        65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  144 (155)
T 2gli_A           65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS  144 (155)
T ss_dssp             CCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHH
T ss_pred             CCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHH
Confidence            99999985  99999999999999999 788999997   999999999999998 8899999999999  999999999


Q ss_pred             CCcccccC
Q 011334          209 NLNFRTDH  216 (488)
Q Consensus       209 ~L~~~~~~  216 (488)
                      .|..|+..
T Consensus       145 ~L~~H~~~  152 (155)
T 2gli_A          145 SLRKHVKT  152 (155)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98877654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=2.6e-23  Score=193.39  Aligned_cols=140  Identities=19%  Similarity=0.420  Sum_probs=128.0

Q ss_pred             CCCCceec--CccccccCChHHHHHHHHhcCCCcccccccccccccCceeec--CCCcccCCCCCCccCChhhhhhhhcc
Q 011334           59 MATNRFIC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYIC--PEKTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        59 ~~~kpy~C--~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C--~~C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      ...++|.|  ++|++.|.....|..|++.|.              ++++|.|  +.|       ++.|.....|.+|+++
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~   66 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHT--------------GEKPFPCKEEGC-------EKGFTSLHHLTRHSLT   66 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHH--------------CCCSSCCSSTTC-------CCCCSSHHHHHHHHTT
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcC--------------CCCCccCCCCCC-------ChhhCCHHHHHHHHHH
Confidence            45688999  689999999999999999996              7899999  777       9999999999999999


Q ss_pred             ccCCcccccc--ccCccccchhhhhhhhc-cc--CCcceec--C-CCCccCChHHHHHHHHHhcCCCccchhh--hchhc
Q 011334          135 KHGEKKWKCE--KCSKKYAVQSDWKAHSK-TC--GTREYKC--D-CGTLFSRKDSFITHRAFCDALAEESTRL--ASSVV  204 (488)
Q Consensus       135 HtgeKpy~C~--~Cgk~F~~ks~L~~H~r-t~--geKpy~C--~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~--C~~sf  204 (488)
                      |+++++|.|+  .|++.|.....|.+|++ .|  ++++|.|  + |++.|.+...|..|+++|+++++|.|.+  |++.|
T Consensus        67 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F  146 (190)
T 1tf6_A           67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF  146 (190)
T ss_dssp             TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBC
T ss_pred             ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchh
Confidence            9999999999  89999999999999994 46  5789999  8 9999999999999999999999999988  99999


Q ss_pred             cccCCCcccccCCCC
Q 011334          205 AAASNLNFRTDHTVN  219 (488)
Q Consensus       205 ~~~s~L~~~~~~~~~  219 (488)
                      .....|..|...+..
T Consensus       147 ~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          147 SLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSHHHHHHHHTSSCS
T ss_pred             cCHHHHHHHHHHhCC
Confidence            999999988765443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=6.3e-22  Score=170.31  Aligned_cols=112  Identities=22%  Similarity=0.505  Sum_probs=104.3

Q ss_pred             CCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcc---c
Q 011334           59 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSR---K  135 (488)
Q Consensus        59 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~---H  135 (488)
                      .++++|+|++|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|.+|++.   |
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~   61 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT--------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMN   61 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS--------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC--------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcC
Confidence            45688999999999999999999999997              7889999998       9999999999999985   6


Q ss_pred             cCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          136 HGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       136 tgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      .++++|.|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|.+|++.+|.
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            789999999999999999999999999 789999999 99999999999999986543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=3.3e-22  Score=171.08  Aligned_cols=110  Identities=29%  Similarity=0.691  Sum_probs=104.1

Q ss_pred             CCCCceecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecC--CCcccCCCCCCccCChhhhhhhhcc
Q 011334           59 MATNRFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICP--EKTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        59 ~~~kpy~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      .++++|.|.+  |++.|.....|..|++.|.              ++++|.|+  .|       ++.|.....|..|+++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~   60 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT--------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRR   60 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH--------------TTCCEECCSTTC-------CCEESSHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC--------------CCCCccCCCCCC-------cCccCCHHHHHHHHHH
Confidence            3568999997  9999999999999999996              78899999  57       9999999999999999


Q ss_pred             ccCCccccccccCccccchhhhhhhhcc-cCCcceec--C-CCCccCChHHHHHHHHHh
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC--D-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C--~-CgKsFs~ks~L~~H~r~H  189 (488)
                      |+++++|+|++|++.|.....|.+|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999999999 79999999  7 999999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=8e-22  Score=170.40  Aligned_cols=114  Identities=24%  Similarity=0.546  Sum_probs=101.6

Q ss_pred             CCCceecC--ccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334           60 ATNRFICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus        60 ~~kpy~C~--~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      ++++|.|+  .|++.|.....|..|+++|               ++++|.|++|       ++.|.....|..|+++|++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH---------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG---------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc---------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCC
Confidence            46789999  8999999999999999998               3678999998       9999999999999999999


Q ss_pred             Cccccccc--cCccccchhhhhhhhcc-cCCcceec--C-CCCccCChHHHHHHHHHhcCCCcc
Q 011334          138 EKKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKC--D-CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       138 eKpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C--~-CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      +++|.|.+  |++.|.....|.+|+++ +++++|.|  + |++.|.++..|..|+++|++++++
T Consensus        60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            99999986  99999999999999999 78999999  6 999999999999999999988764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=9.7e-22  Score=176.60  Aligned_cols=126  Identities=20%  Similarity=0.313  Sum_probs=109.1

Q ss_pred             CCCceecCccccccCChHHHHHHHHh-cCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334           60 ATNRFICEICNKGFQRDQNLQLHRRG-HNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        60 ~~kpy~C~~CgK~F~~~~~L~~H~r~-H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      ++.+|.|.+|++.|.+...|..|++. |......      .......|.|++|       ++.|.....|..|+++|+++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~------~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   88 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ------NNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGE   88 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC------SSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc------CCccccccCCCCc-------ccccCCHHHHHHHHHhcCCC
Confidence            45789999999999999999999998 5411000      0001123788888       99999999999999999999


Q ss_pred             ccccccc--cCccccchhhhhhhhcc-cCCcceecC---CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          139 KKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKCD---CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       139 Kpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C~---CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      ++|+|.+  |++.|.....|.+|+++ +++++|.|+   |++.|.++..|.+|+++|+++++|.|.
T Consensus        89 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999998  99999999999999999 789999997   999999999999999999999999884

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=4.4e-22  Score=177.45  Aligned_cols=105  Identities=21%  Similarity=0.367  Sum_probs=79.7

Q ss_pred             CccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhc
Q 011334           54 SPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFS  133 (488)
Q Consensus        54 ~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r  133 (488)
                      +..++.++++|+|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|..|++
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C-------~k~F~~~~~L~~H~~   71 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS--------------WEKKYPCRYC-------EKVFPLAEYRTKHEI   71 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH--------------CCSCEECSSS-------SCEESSHHHHHHHHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC--------------CCCCeeCCcc-------Ceecccccchhhhcc
Confidence            3445667778888888888888888888888875              6777888877       788888888888888


Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCC------cceecC-CCCccCCh
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT------REYKCD-CGTLFSRK  179 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge------Kpy~C~-CgKsFs~k  179 (488)
                      +|++++||.|++|++.|..+..|..|+++ |++      ++|+|. |++.|.+.
T Consensus        72 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           72 HHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             ccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            88888888888888888888888888777 554      347777 77777543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=3e-21  Score=172.88  Aligned_cols=136  Identities=22%  Similarity=0.382  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCCchhHhhcCcc---ccCCCCceecCcc-----ccccCChHHHHHHHHhcCCCcccccccccccccCcee
Q 011334           35 KKKRNLPGTPDPDAEVIALSPK---TLMATNRFICEIC-----NKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVY  106 (488)
Q Consensus        35 k~k~~~p~~~~~~~~~l~~~~k---~~~~~kpy~C~~C-----gK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy  106 (488)
                      +.++..|+..+.....+..|..   .+.++++|.|++|     ++.|.....|..|++.|.              ++++|
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~--------------~~~~~   68 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT--------------GEKPH   68 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH--------------CCCCC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC--------------CCCCc
Confidence            4577889999999999999987   7888999998753     499999999999999996              78999


Q ss_pred             ecCC--CcccCCCCCCccCChhhhhhhhccccCCccccccc--cCccccchhhhhhhh-cc-cCCcceecC---CCCccC
Q 011334          107 ICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS-KT-CGTREYKCD---CGTLFS  177 (488)
Q Consensus       107 ~C~~--C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~--Cgk~F~~ks~L~~H~-rt-~geKpy~C~---CgKsFs  177 (488)
                      .|++  |       ++.|.....|..|+++|+++++|+|++  |++.|.....|.+|+ ++ .++++|.|+   |++.|.
T Consensus        69 ~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           69 KCTFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT  141 (155)
T ss_dssp             CCCSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEES
T ss_pred             cCCCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccC
Confidence            9986  6       999999999999999999999999998  999999999999998 66 678999994   999999


Q ss_pred             ChHHHHHHHHHhcC
Q 011334          178 RKDSFITHRAFCDA  191 (488)
Q Consensus       178 ~ks~L~~H~r~H~~  191 (488)
                      ++..|..|+++|++
T Consensus       142 ~~~~L~~H~~~hhg  155 (155)
T 2gli_A          142 DPSSLRKHVKTVHG  155 (155)
T ss_dssp             SHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999999975

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=1.5e-21  Score=173.95  Aligned_cols=99  Identities=24%  Similarity=0.391  Sum_probs=92.6

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCC
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSR  178 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~  178 (488)
                      .|+++|+|++|       ++.|.....|.+|+++|++++||+|++|++.|.....|..|+++ ++++||.|+ |++.|.+
T Consensus        18 ~Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           18 DGRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             TTEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred             CCCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence            38999999999       99999999999999999999999999999999999999999999 699999999 9999999


Q ss_pred             hHHHHHHHHHhcCCC------ccchhhhchhccc
Q 011334          179 KDSFITHRAFCDALA------EESTRLASSVVAA  206 (488)
Q Consensus       179 ks~L~~H~r~H~~~~------~~~C~~C~~sf~~  206 (488)
                      +..|..|+++||+++      +|+|.+|++.|..
T Consensus        91 ~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             HHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            999999999998764      4789999987754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.7e-20  Score=161.25  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=103.6

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc----cCCcceecC-CCCc
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT----CGTREYKCD-CGTL  175 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt----~geKpy~C~-CgKs  175 (488)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|.+|++.    .++++|.|+ |++.
T Consensus         3 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPTC-------HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTTT-------CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCE
T ss_pred             CCCCCCCCCCC-------CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCc
Confidence            36789999998       99999999999999999999999999999999999999999985    477999999 9999


Q ss_pred             cCChHHHHHHHHHhcCCCccchhhhchhccccCCCcccccCCC
Q 011334          176 FSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTV  218 (488)
Q Consensus       176 Fs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~~~~~~  218 (488)
                      |.+...|..|+++|+++++|.|.+|++.|.....|..|+...+
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             ESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999998875433

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.78  E-value=5.1e-20  Score=157.41  Aligned_cols=107  Identities=21%  Similarity=0.471  Sum_probs=101.1

Q ss_pred             cCceeecCC--CcccCCCCCCccCChhhhhhhhccccCCcccccc--ccCccccchhhhhhhhcc-cCCcceecC-CCCc
Q 011334          102 KKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTL  175 (488)
Q Consensus       102 ~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKs  175 (488)
                      ++++|.|.+  |       ++.|.....|..|+++|+++++|+|+  .|++.|.....|.+|+++ +++++|.|+ |++.
T Consensus         3 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGC-------NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTS-------CCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCeeeeCCCCCC-------cchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            678999997  6       99999999999999999999999999  799999999999999999 789999999 9999


Q ss_pred             cCChHHHHHHHHHhcCCCccch--hhhchhccccCCCccccc
Q 011334          176 FSRKDSFITHRAFCDALAEEST--RLASSVVAAASNLNFRTD  215 (488)
Q Consensus       176 Fs~ks~L~~H~r~H~~~~~~~C--~~C~~sf~~~s~L~~~~~  215 (488)
                      |.+...|..|+++|+++++|.|  .+|++.|.....|..|..
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHh
Confidence            9999999999999999999999  899999999988876653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.74  E-value=1.8e-18  Score=149.19  Aligned_cols=107  Identities=21%  Similarity=0.406  Sum_probs=97.8

Q ss_pred             cCceeecC--CCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC---CCCc
Q 011334          102 KKKVYICP--EKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD---CGTL  175 (488)
Q Consensus       102 ~~kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~---CgKs  175 (488)
                      ..++|.|+  .|       ++.|.....|..|+++| ++++|.|++|++.|.....|.+|+++ +++++|.|.   |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            2 EPRTIACPHKGC-------TKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             ---CEECCSTTC-------CCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CCCcccCCCCCC-------cCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            46789998  66       99999999999999999 89999999999999999999999999 788999994   9999


Q ss_pred             cCChHHHHHHHHHhcCCCccchh--hhchhccccCCCcccccC
Q 011334          176 FSRKDSFITHRAFCDALAEESTR--LASSVVAAASNLNFRTDH  216 (488)
Q Consensus       176 Fs~ks~L~~H~r~H~~~~~~~C~--~C~~sf~~~s~L~~~~~~  216 (488)
                      |.+...|..|+++|+++++|.|.  .|++.|.....|..|...
T Consensus        74 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  116 (124)
T 1ubd_C           74 FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT  116 (124)
T ss_dssp             ESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH
Confidence            99999999999999999999995  599999999999977654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.74  E-value=4.7e-18  Score=152.45  Aligned_cols=118  Identities=20%  Similarity=0.293  Sum_probs=108.8

Q ss_pred             ccCCCCCCCCCCCCchhHhhcCccc-cCCCCc--------eecCccccccCChHHHHHHHHhcCCCcccccccccccccC
Q 011334           33 ASKKKRNLPGTPDPDAEVIALSPKT-LMATNR--------FICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKK  103 (488)
Q Consensus        33 ~~k~k~~~p~~~~~~~~~l~~~~k~-~~~~kp--------y~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~  103 (488)
                      ....++..|+..+.....+..|.+. |..+++        |.|.+|++.|.....|..|++.|+              ++
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~   88 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT--------------GE   88 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH--------------CC
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC--------------CC
Confidence            4567889999999999999999887 766654        899999999999999999999996              78


Q ss_pred             ceeecCC--CcccCCCCCCccCChhhhhhhhccccCCccccccc--cCccccchhhhhhhhcc-cCCcceecC
Q 011334          104 KVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       104 kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      ++|.|++  |       ++.|.....|.+|+++|++++||+|.+  |++.|..+..|.+|+++ +++++|.|.
T Consensus        89 ~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           89 KPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999998  7       999999999999999999999999997  99999999999999999 799999985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=6.6e-18  Score=141.92  Aligned_cols=90  Identities=20%  Similarity=0.448  Sum_probs=85.3

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCC
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSR  178 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~  178 (488)
                      ..+++|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |++.|.+
T Consensus        13 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence            36789999998       99999999999999999999999999999999999999999999 788999999 9999999


Q ss_pred             hHHHHHHHHHhcCCCccch
Q 011334          179 KDSFITHRAFCDALAEEST  197 (488)
Q Consensus       179 ks~L~~H~r~H~~~~~~~C  197 (488)
                      ...|..|+++|++++++.+
T Consensus        86 ~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           86 SRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHhCCCCCCcC
Confidence            9999999999999988754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=1e-17  Score=140.72  Aligned_cols=91  Identities=24%  Similarity=0.519  Sum_probs=85.5

Q ss_pred             CCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334           59 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        59 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      ..+++|.|.+|++.|.....|..|++.|+              ++++|.|++|       ++.|.....|.+|+++|+++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   71 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT--------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKE   71 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC--------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC--------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCC
Confidence            34578999999999999999999999997              7899999998       99999999999999999999


Q ss_pred             ccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      ++|+|.+|++.|.....|.+|+++ +++++|.+
T Consensus        72 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            999999999999999999999999 68888865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.1e-17  Score=137.96  Aligned_cols=88  Identities=18%  Similarity=0.298  Sum_probs=83.2

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCC
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSR  178 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~  178 (488)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |++.|.+
T Consensus         4 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            4 GSSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            36789999998       99999999999999999999999999999999999999999999 788999999 9999999


Q ss_pred             hHHHHHHHHHhcCCCcc
Q 011334          179 KDSFITHRAFCDALAEE  195 (488)
Q Consensus       179 ks~L~~H~r~H~~~~~~  195 (488)
                      ...|..|+++|++++..
T Consensus        77 ~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           77 SSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            99999999999987654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.9e-18  Score=147.62  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=89.6

Q ss_pred             HHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcc--ccCCcccc-ccccCccc--c
Q 011334           77 QNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSR--KHGEKKWK-CEKCSKKY--A  151 (488)
Q Consensus        77 ~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~--HtgeKpy~-C~~Cgk~F--~  151 (488)
                      ..|..|+++|+              ++++|.|++|       ++.|.....|..|+++  |.+++++. |++|++.|  .
T Consensus         5 ~~l~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            5 SSGKLYGSIFT--------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCC--------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             hhhhhheeeeC--------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            45778888886              7899999998       9999999999999999  88888765 99999999  9


Q ss_pred             chhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          152 VQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       152 ~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      .+..|.+|+++ +++++|.|+ |++.|.++..|.+|++.|+......+
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            99999999999 689999999 99999999999999999987665443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=1.2e-17  Score=135.73  Aligned_cols=85  Identities=24%  Similarity=0.586  Sum_probs=78.1

Q ss_pred             cCceeecC--CCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccC
Q 011334          102 KKKVYICP--EKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFS  177 (488)
Q Consensus       102 ~~kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs  177 (488)
                      ++++|.|+  .|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            36789998  46       99999999999999999999999999999999999999999999 799999999 999999


Q ss_pred             ChHHHHHHHHHhcCCC
Q 011334          178 RKDSFITHRAFCDALA  193 (488)
Q Consensus       178 ~ks~L~~H~r~H~~~~  193 (488)
                      ++..|..|+++|++++
T Consensus        74 ~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           74 RSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SHHHHHHHHGGGGC--
T ss_pred             CHHHHHHHHHHhcccC
Confidence            9999999999998865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.5e-17  Score=135.73  Aligned_cols=90  Identities=27%  Similarity=0.477  Sum_probs=83.8

Q ss_pred             cCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334           58 LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus        58 ~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      ..++++|.|.+|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|.+|+++|++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT--------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCC--------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcC--------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            356789999999999999999999999997              7889999998       9999999999999999999


Q ss_pred             CccccccccCccccchhhhhhhhcc-cCCcce
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKT-CGTREY  168 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy  168 (488)
                      +++|+|++|++.|.....|.+|+++ +++++.
T Consensus        62 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999 666543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.4e-17  Score=139.69  Aligned_cols=102  Identities=13%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             hHhhcCccccCCCCceecCccccccCChHHHHHHHHh--cCCCcccccccccccccCce-eecCCCcccCCCCCCcc--C
Q 011334           49 EVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRG--HNLPWKLRQRTNKDVIKKKV-YICPEKTCVHHEPSRAL--G  123 (488)
Q Consensus        49 ~~l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~--H~~p~~~~~~~~~~~~~~kp-y~C~~C~C~~~~c~k~F--~  123 (488)
                      ..+..|.+.|.++++|.|++|++.|.....|..|++.  |.              +.++ +.|++|       ++.|  .
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~--------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY--------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC--------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc--------------ccCCCccCCCC-------Ccccccc
Confidence            3456788899999999999999999999999999998  64              4444 459998       7877  8


Q ss_pred             ChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          124 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       124 ~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      ....|.+|+++|++++||+|++|++.|..+..|.+|+++ +......+.
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999999999999999999999999998 555544443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=3.4e-17  Score=138.29  Aligned_cols=93  Identities=17%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             ccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcc
Q 011334           55 PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        55 ~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      .+.+.++++|.|++|++.|.....|..|+++|.                ++|.|++|       ++.|.....|.+|++ 
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~----------------~~~~C~~C-------~~~f~~~~~l~~H~~-   63 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR----------------NAAVCPYC-------SLRFFSPELKQEHES-   63 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH----------------HSBCCTTT-------CCCBSSHHHHHHHHH-
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC----------------CCccCCCC-------CCccCCHHHHHHHHH-
Confidence            445677788888888888888888888888873                46888887       888888888888885 


Q ss_pred             ccCCccccccccCccccchhhhhhhhc-c-cCCcceecC
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSK-T-CGTREYKCD  171 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~r-t-~geKpy~C~  171 (488)
                      |++++||+|++|++.|..+..|++|++ + .++++|.|.
T Consensus        64 H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            888888888888888888888888886 4 466777764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.67  E-value=2.8e-17  Score=131.05  Aligned_cols=80  Identities=24%  Similarity=0.531  Sum_probs=76.4

Q ss_pred             eeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHH
Q 011334          105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSF  182 (488)
Q Consensus       105 py~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L  182 (488)
                      ||.|++|       ++.|.....|..|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |++.|.++..|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5889998       99999999999999999999999999999999999999999999 799999999 99999999999


Q ss_pred             HHHHHHhcC
Q 011334          183 ITHRAFCDA  191 (488)
Q Consensus       183 ~~H~r~H~~  191 (488)
                      ..|+++|++
T Consensus        74 ~~H~~~H~g   82 (82)
T 2kmk_A           74 ITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhCC
Confidence            999999964

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.1e-17  Score=138.57  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCCh
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRK  179 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~k  179 (488)
                      .++++|.|++|       ++.|.....|..|+++|  +++|+|.+|++.|.....|.+|++.+++++|.|+ |++.|.++
T Consensus        12 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A           12 ENKEVYQCRLC-------NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCBCTTT-------CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSH
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCH
Confidence            37889999998       99999999999999998  4799999999999999999999954688999999 99999999


Q ss_pred             HHHHHHHH-HhcCCCccchh
Q 011334          180 DSFITHRA-FCDALAEESTR  198 (488)
Q Consensus       180 s~L~~H~r-~H~~~~~~~C~  198 (488)
                      ..|..|++ +|.++++|.|.
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            99999997 88888888764

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.2e-16  Score=131.31  Aligned_cols=85  Identities=22%  Similarity=0.456  Sum_probs=78.7

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCC--cceecC-CCCcc
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT--REYKCD-CGTLF  176 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge--Kpy~C~-CgKsF  176 (488)
                      .++++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|.....|.+|+++ +++  ++|.|. |++.|
T Consensus         3 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            3 SGSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            36889999999       99999999999999999999999999999999999999999999 665  899999 99999


Q ss_pred             CChHHHHHHHH-HhcCC
Q 011334          177 SRKDSFITHRA-FCDAL  192 (488)
Q Consensus       177 s~ks~L~~H~r-~H~~~  192 (488)
                      .++..|..|++ +|.++
T Consensus        76 ~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSHHHHHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHHhcCCC
Confidence            99999999986 56543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=7.8e-17  Score=130.92  Aligned_cols=85  Identities=25%  Similarity=0.538  Sum_probs=78.5

Q ss_pred             CCceecC--ccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334           61 TNRFICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        61 ~kpy~C~--~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      +++|.|+  .|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT--------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH--------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC--------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCC
Confidence            5789998  69999999999999999996              7889999998       99999999999999999999


Q ss_pred             ccccccccCccccchhhhhhhhcc-cCCc
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGTR  166 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~geK  166 (488)
                      ++|+|++|++.|..+..|.+|+++ +++|
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999999999 5654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1e-16  Score=135.61  Aligned_cols=84  Identities=26%  Similarity=0.590  Sum_probs=80.0

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCC
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSR  178 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~  178 (488)
                      .++++|.| +|       ++.|.....|.+|++.|+++++|+|.+|++.|.....|.+|+++ +++++|.|+ |++.|.+
T Consensus         6 ~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            6 SGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            37899999 88       99999999999999999999999999999999999999999999 788999999 9999999


Q ss_pred             hHHHHHHHHHhcCC
Q 011334          179 KDSFITHRAFCDAL  192 (488)
Q Consensus       179 ks~L~~H~r~H~~~  192 (488)
                      +..|.+|++.|+..
T Consensus        78 ~~~l~~H~~~~~~~   91 (110)
T 2csh_A           78 RDSFHRHVTSCTKS   91 (110)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccc
Confidence            99999999999763

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=129.90  Aligned_cols=86  Identities=24%  Similarity=0.483  Sum_probs=80.1

Q ss_pred             CCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334           59 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        59 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      .++++|.|.+|++.|.....|..|++.|+              ++++|.|++|       ++.|.....|.+|+++|+++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS--------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC--------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC--------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCC
Confidence            45789999999999999999999999997              7899999998       99999999999999999997


Q ss_pred             --ccccccccCccccchhhhhhhhcc-cCC
Q 011334          139 --KKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       139 --Kpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                        ++|+|.+|++.|..+..|.+|++. |..
T Consensus        62 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CCSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCCceECCCccchhCCHHHHHHHHHHhcCC
Confidence              999999999999999999999974 643

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.3e-16  Score=135.07  Aligned_cols=85  Identities=19%  Similarity=0.418  Sum_probs=81.2

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .|.++++|.| +|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|.+|+++|+
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~   61 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL--------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHT   61 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS--------------CCCSEECTTT-------SCEESSSHHHHHHHTTTC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC--------------CCcCccCCCC-------CcccCCHHHHHHHHHHcC
Confidence            5778899999 99999999999999999997              7889999998       999999999999999999


Q ss_pred             CCccccccccCccccchhhhhhhhccc
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      ++++|+|++|++.|..+..|.+|+++|
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           62 GIKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            999999999999999999999999984

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.63  E-value=1.2e-16  Score=127.34  Aligned_cols=80  Identities=31%  Similarity=0.578  Sum_probs=76.9

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccc
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWK  142 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~  142 (488)
                      ||.|++|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|.+|+++|+++++|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~   59 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS--------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHK   59 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH--------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEE
T ss_pred             CccCCCCcccccCchhHHHHHHHcC--------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCc
Confidence            5999999999999999999999996              7889999998       999999999999999999999999


Q ss_pred             ccccCccccchhhhhhhhccc
Q 011334          143 CEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       143 C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      |++|++.|..+..|.+|+++|
T Consensus        60 C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           60 CQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CTTTSCEESSHHHHHHHHHHH
T ss_pred             CCCcchhhCChHHHHHHHHhh
Confidence            999999999999999999884

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=4.2e-16  Score=125.49  Aligned_cols=78  Identities=19%  Similarity=0.419  Sum_probs=72.5

Q ss_pred             hhhhhhccccCCccccccccCccccchhhhhhhhcc-cCC----cceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          127 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT----REYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       127 ~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge----Kpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|.+|+++|++++||+|.+|++.|.....|.+|+++ +.+    ++|.|+ |++.|.++..|..|+++|+++.++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            467899999999999999999999999999999987 554    789999 99999999999999999999999999999


Q ss_pred             chhc
Q 011334          201 SSVV  204 (488)
Q Consensus       201 ~~sf  204 (488)
                      +..+
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.59  E-value=1e-15  Score=126.67  Aligned_cols=86  Identities=24%  Similarity=0.584  Sum_probs=78.8

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccc--ccCccccchhhhhhhhcc-cCCcceecC-CCCcc
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLF  176 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsF  176 (488)
                      ..+++|.|++..|     ++.|.....|.+|+++|+++++|+|.  .|++.|.....|.+|+++ +++++|.|+ |++.|
T Consensus        11 ~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           11 EKRRIHYCDYPGC-----TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             CSCCCEECCSSSC-----CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred             ccCcceEcCCCCC-----CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence            4678899997212     99999999999999999999999996  699999999999999999 789999999 99999


Q ss_pred             CChHHHHHHHHHhcC
Q 011334          177 SRKDSFITHRAFCDA  191 (488)
Q Consensus       177 s~ks~L~~H~r~H~~  191 (488)
                      .+...|..|+++|.+
T Consensus        86 ~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           86 SRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999999964

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.57  E-value=1e-16  Score=130.81  Aligned_cols=84  Identities=21%  Similarity=0.323  Sum_probs=77.8

Q ss_pred             CceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHH
Q 011334          103 KKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDS  181 (488)
Q Consensus       103 ~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~  181 (488)
                      +++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.....|.+|++++..++|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999998       99999999999999999999999999999999999999999999656999999 9999999999


Q ss_pred             HHHHHHHhcCCC
Q 011334          182 FITHRAFCDALA  193 (488)
Q Consensus       182 L~~H~r~H~~~~  193 (488)
                      |..|++.+|+..
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999999887643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.57  E-value=1.6e-15  Score=122.80  Aligned_cols=81  Identities=25%  Similarity=0.549  Sum_probs=76.2

Q ss_pred             cCceeecCC--CcccCCCCCCccCChhhhhhhhccccCCcccccc--ccCccccchhhhhhhhcc-cCCcceecC-CCCc
Q 011334          102 KKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTL  175 (488)
Q Consensus       102 ~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKs  175 (488)
                      +.++|.|++  |       ++.|.....|..|+++|+++++|+|+  .|++.|.....|.+|+++ +++++|.|+ |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            356799998  7       99999999999999999999999997  699999999999999999 799999999 9999


Q ss_pred             cCChHHHHHHHHHh
Q 011334          176 FSRKDSFITHRAFC  189 (488)
Q Consensus       176 Fs~ks~L~~H~r~H  189 (488)
                      |.+...|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999988

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.56  E-value=2.3e-15  Score=121.86  Aligned_cols=82  Identities=22%  Similarity=0.579  Sum_probs=77.3

Q ss_pred             CCceecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecC--CCcccCCCCCCccCChhhhhhhhcccc
Q 011334           61 TNRFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICP--EKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        61 ~kpy~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .++|.|++  |++.|.....|..|++.|.              ++++|.|+  .|       ++.|.....|.+|+++|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT--------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC--------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC--------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcC
Confidence            46799999  9999999999999999997              78999997  47       999999999999999999


Q ss_pred             CCccccccccCccccchhhhhhhhccc
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      ++++|+|++|++.|.....|..|+++|
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           62 GHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            999999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.56  E-value=2.9e-15  Score=123.91  Aligned_cols=84  Identities=20%  Similarity=0.508  Sum_probs=78.0

Q ss_pred             CCCCceecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecC--CCcccCCCCCCccCChhhhhhhhcc
Q 011334           59 MATNRFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICP--EKTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        59 ~~~kpy~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~--~C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      ...++|.|.+  |++.|.....|..|++.|.              ++++|.|+  .|       ++.|.....|.+|+++
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~   69 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT--------------GEKPYKCTWEGC-------DWRFARSDELTRHYRK   69 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHS--------------CCCCEECCSSSC-------CCEESSHHHHHHHHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhC--------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHH
Confidence            3457899997  9999999999999999997              78899997  46       9999999999999999


Q ss_pred             ccCCccccccccCccccchhhhhhhhccc
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      |+++++|+|++|++.|..+..|.+|+++|
T Consensus        70 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           70 HTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             HTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             hCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            99999999999999999999999999885

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.55  E-value=2.2e-16  Score=137.59  Aligned_cols=121  Identities=14%  Similarity=0.210  Sum_probs=91.6

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .+.+.++|.|..++...  ...+..|.+.|...           ..++.+.|++|. ..-.+.+.|.....|..|+ +|+
T Consensus         6 ~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l~-----------~~~~~~~c~~~~-~~~~~~~~~~~~~~l~~h~-~h~   70 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFI--HVTLEELKRYHQLT-----------PEQKRLIRAIVK-TLIHNPQLLDESSYLYRLL-ASK   70 (129)
T ss_dssp             CCTTCCGGGGCSSCEEE--ECCHHHHHHHTTSC-----------HHHHHHHHHHHH-HHHHCGGGTTTHHHHHHHH-HHH
T ss_pred             hcccccccccccCCeee--eecHHhhhccccCC-----------hhhCcccchhhh-cccCCCcccCCHHHHHHHH-HhC
Confidence            45677889887755432  22345565555311           245677888871 1111134555777788887 699


Q ss_pred             CCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      +++||+|++|++.|.....|.+|+++| ++||.|+ |++.|.++..|.+|+++|+++.
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            999999999999999999999999999 9999999 9999999999999999998863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.55  E-value=2e-15  Score=116.37  Aligned_cols=55  Identities=25%  Similarity=0.512  Sum_probs=39.4

Q ss_pred             CccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ||||+|.+|++.|.....|.+|+++ .++|||.|+ ||+.|.+++.|.+|+++|.++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            5677777777777777777777777 567777777 777777777777777777654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.6e-15  Score=124.67  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCcccc-chhhhhhhhcc-cC-CcceecC-CCCccCChHHHHHHHHHhcCCCc
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA-VQSDWKAHSKT-CG-TREYKCD-CGTLFSRKDSFITHRAFCDALAE  194 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~-~ks~L~~H~rt-~g-eKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~  194 (488)
                      ...+.....+.+|+++|+++++|+|++|++.|. .+..|++|+++ ++ +++|.|+ |+|.|.++..|.+|+++|+++++
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            445667778899999999999999999999999 99999999999 66 8999999 99999999999999999998877


Q ss_pred             cc
Q 011334          195 ES  196 (488)
Q Consensus       195 ~~  196 (488)
                      ..
T Consensus        83 ~~   84 (98)
T 2gqj_A           83 SD   84 (98)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=2.2e-15  Score=122.76  Aligned_cols=80  Identities=21%  Similarity=0.332  Sum_probs=76.1

Q ss_pred             CCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcc
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKK  140 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKp  140 (488)
                      +++|.|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|.+|+++|++ ++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~   58 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT--------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LP   58 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH--------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC--------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Cc
Confidence            478999999999999999999999996              7899999998       9999999999999999985 89


Q ss_pred             ccccccCccccchhhhhhhhcc
Q 011334          141 WKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       141 y~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |.|+.|++.|.....|..|++.
T Consensus        59 ~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           59 ILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.48  E-value=1.9e-14  Score=110.81  Aligned_cols=57  Identities=25%  Similarity=0.589  Sum_probs=35.1

Q ss_pred             CCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      ||||+|++|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|.+|+++|+||
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht--------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL--------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH--------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC--------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCC
Confidence            456666666666666666666666664              5566666665       66666666666666666654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.1e-14  Score=112.95  Aligned_cols=70  Identities=21%  Similarity=0.503  Sum_probs=51.8

Q ss_pred             CCCceecCc--cccccCChHHHHHHHH-hcCCCcccccccccccccCceeecCC--CcccCCCCCCccCChhhhhhhhcc
Q 011334           60 ATNRFICEI--CNKGFQRDQNLQLHRR-GHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        60 ~~kpy~C~~--CgK~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      ++++|.|..  |++.|.....|..|++ .|.              ++++|.|++  |       ++.|.....|.+|+++
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~--------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI--------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGG--------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhC--------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            456677775  7777777777777777 564              667777776  6       7777777777777777


Q ss_pred             ccCCccccccccCccc
Q 011334          135 KHGEKKWKCEKCSKKY  150 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F  150 (488)
                      |++++||+|++|++.|
T Consensus        63 H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHTSCCCSCCSSSCCC
T ss_pred             hCCCCCeeCCCCCCCC
Confidence            7777777777777776

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.9e-14  Score=113.24  Aligned_cols=67  Identities=28%  Similarity=0.657  Sum_probs=54.8

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      +...+.++++|+|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|.+|+++|+++++|.|
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44566778888888888888888888888888 577888888 88888888888888888888888876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=3.3e-14  Score=112.90  Aligned_cols=67  Identities=19%  Similarity=0.390  Sum_probs=60.7

Q ss_pred             hhhhhhccccCCccccccccCccccchhhhhhhhcc-cC--CcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          127 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CG--TREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       127 ~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~g--eKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      .|.+|+++|++++||+|++|++.|..+..|.+|++. |.  +++|.|+ |++.|.++..|..|++.||...
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            367899999999999999999999999999999984 54  3899999 9999999999999999987654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3.3e-14  Score=119.20  Aligned_cols=77  Identities=14%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccc-cchhhhhhhhcccCCcceecC-CCCccCChHHHHHH-HHHhcCCCcc
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKY-AVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITH-RAFCDALAEE  195 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F-~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H-~r~H~~~~~~  195 (488)
                      ...|.....|..|++.|+++++|+|++|++.| ..+..|+.|+++|++++|.|+ |+|.|.++..|+.| +++|.++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            35677788899999999999999999999999 999999999999988999999 99999999999999 8888765433

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1e-13  Score=111.31  Aligned_cols=83  Identities=17%  Similarity=0.322  Sum_probs=65.8

Q ss_pred             hhcCccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhh
Q 011334           51 IALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKK  130 (488)
Q Consensus        51 l~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~  130 (488)
                      +..|.++|.++++|.|.+|++.|.....|..|++.|+...          ..+++|.|++|       ++.|.....|.+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~----------~~~~~~~C~~C-------~~~f~~~~~L~~   65 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN----------FVPAAFVCSKC-------GKTFTRRNTMAR   65 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS----------CCCCCEECSSS-------CCEESCHHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc----------CCCcceECCCC-------CChhCCHHHHHH
Confidence            3457778888889999999999999999999988776100          01368888888       888888888888


Q ss_pred             hhccccCCccccccccCccc
Q 011334          131 HFSRKHGEKKWKCEKCSKKY  150 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F  150 (488)
                      |+++|++++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            88888888888888888765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.2e-13  Score=109.54  Aligned_cols=66  Identities=26%  Similarity=0.451  Sum_probs=52.6

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .+.++++|.|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|.+|+++|+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHT--------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC--------------CSCSEECSSS-------CCEESSHHHHHHHGGGSC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcC--------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhC
Confidence            3445677888888888888888888888886              6778888887       788888888888888888


Q ss_pred             CCccccc
Q 011334          137 GEKKWKC  143 (488)
Q Consensus       137 geKpy~C  143 (488)
                      +++||+|
T Consensus        71 ~~~p~~C   77 (77)
T 2cot_A           71 GSGPSSG   77 (77)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            8888877

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=7.8e-14  Score=109.41  Aligned_cols=63  Identities=29%  Similarity=0.593  Sum_probs=59.0

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      +.++|++++||+|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|.+|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            56789999999999999999999999999999 789999999 9999999999999999998764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.4e-14  Score=111.11  Aligned_cols=68  Identities=22%  Similarity=0.438  Sum_probs=47.0

Q ss_pred             cCceeecCC--CcccCCCCCCccCChhhhhhhhc-cccCCccccccc--cCccccchhhhhhhhcc-cCCcceecC-CCC
Q 011334          102 KKKVYICPE--KTCVHHEPSRALGDLTGIKKHFS-RKHGEKKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKCD-CGT  174 (488)
Q Consensus       102 ~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r-~HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgK  174 (488)
                      ++++|.|..  |       ++.|.....|.+|++ .|+++++|+|++  |++.|..+..|.+|+++ +++++|.|+ |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            456666665  4       677777777777776 577777777766  77777777777777766 566777777 777


Q ss_pred             cc
Q 011334          175 LF  176 (488)
Q Consensus       175 sF  176 (488)
                      .|
T Consensus        77 ~F   78 (79)
T 2dlk_A           77 SS   78 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            66

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=8.8e-14  Score=111.15  Aligned_cols=77  Identities=23%  Similarity=0.543  Sum_probs=70.9

Q ss_pred             eeec--CCCcccCCCCCCccCChhhhhhhhccccCCccccccc--cCccccchhhhhhhhcccCCcceecC----CCCcc
Q 011334          105 VYIC--PEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKTCGTREYKCD----CGTLF  176 (488)
Q Consensus       105 py~C--~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt~geKpy~C~----CgKsF  176 (488)
                      ||.|  +.|       ++.|.....|..|+++|++++||+|++  |++.|.....|.+|+++|..  |.|.    |++.|
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCcc
Confidence            5888  777       999999999999999999999999988  99999999999999999433  9994    99999


Q ss_pred             CChHHHHHHHHHhc
Q 011334          177 SRKDSFITHRAFCD  190 (488)
Q Consensus       177 s~ks~L~~H~r~H~  190 (488)
                      .+...|..|+++||
T Consensus        72 ~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           72 KTWTLYLKHVAECH   85 (85)
T ss_dssp             SSHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.42  E-value=8.2e-14  Score=111.34  Aligned_cols=77  Identities=26%  Similarity=0.595  Sum_probs=72.9

Q ss_pred             ceec--CccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCC--CcccCCCCCCccCChhhhhhhhccccCC
Q 011334           63 RFIC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus        63 py~C--~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      ||+|  ++|++.|.....|..|+++|.              ++++|.|++  |       ++.|.....|.+|+++|++ 
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~-   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT--------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG-   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH--------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS-
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC--------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC-
Confidence            6999  999999999999999999996              789999988  8       9999999999999999998 


Q ss_pred             ccccccc---cCccccchhhhhhhhccc
Q 011334          139 KKWKCEK---CSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       139 Kpy~C~~---Cgk~F~~ks~L~~H~rt~  163 (488)
                        |+|.+   |++.|.....|.+|+++|
T Consensus        59 --~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           59 --YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             --EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             --CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence              99999   999999999999999873

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=1.9e-13  Score=107.60  Aligned_cols=62  Identities=24%  Similarity=0.664  Sum_probs=54.6

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      .+.++++|+|++|++.|..+..|.+|+++ +++++|.|. |++.|.++..|.+|+++|+++++|
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            46678899999999999999999999988 678899999 999999999999999999888765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.3e-13  Score=105.91  Aligned_cols=61  Identities=30%  Similarity=0.577  Sum_probs=55.8

Q ss_pred             hccccCCccccccccCccccchhhhhhhhcc-c--CCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-C--GTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~--geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +++|++++||+|++|++.|.....|.+|+++ |  ++++|.|+ |++.|.+++.|..|++.||++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999998 6  78999999 999999999999999999864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2e-13  Score=106.25  Aligned_cols=62  Identities=18%  Similarity=0.384  Sum_probs=56.2

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      .|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|.+|+++|+++++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            47789999999999999999999999999 688999999 999999999999999999987764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.3e-13  Score=117.33  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=57.1

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-c----CCcceecC-CCCccCChHHHHHH-HHHhcCCCccchhhhc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-C----GTREYKCD-CGTLFSRKDSFITH-RAFCDALAEESTRLAS  201 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~----geKpy~C~-CgKsFs~ks~L~~H-~r~H~~~~~~~C~~C~  201 (488)
                      ..+|++||+|++|++.|..+..|.+|+++ |    +++||.|+ |++.|.++..|..| +++|.++++|.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            34678889999999999988889988874 5    47889998 99999999999999 7888888999888754

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.3e-15  Score=115.65  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=65.6

Q ss_pred             hhhhhhhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          125 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       125 ~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      ...|..|+++|++++||.|++|++.|.....|..      +++|.|+ |++.|.+...|..|+++|+++++|.|.+|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4578899999999999999999999999998886      7899999 99999999999999999999999999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-13  Score=115.32  Aligned_cols=79  Identities=16%  Similarity=0.350  Sum_probs=71.3

Q ss_pred             ccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccC-ChhhhhhhhccccC-CccccccccCcc
Q 011334           72 GFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALG-DLTGIKKHFSRKHG-EKKWKCEKCSKK  149 (488)
Q Consensus        72 ~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~-~~s~L~~H~r~Htg-eKpy~C~~Cgk~  149 (488)
                      .+.....+..|+++|.              ++++|.|++|       ++.|. ....|++|+++|++ ++||+|.+|++.
T Consensus         5 s~~~~~~~~~h~~~h~--------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIH--------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCSCSHHHHTTT--------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCcHHHHHHHhc--------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            4555566789999997              7899999998       99999 99999999999999 999999999999


Q ss_pred             ccchhhhhhhhcc-cCCcceecC
Q 011334          150 YAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       150 F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |..+..|++|+++ |+++|+..+
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999998 888886654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=5.2e-13  Score=113.65  Aligned_cols=72  Identities=15%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             cCCCCceecCccccccCChHHHHHHHH-hcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhh-hccc
Q 011334           58 LMATNRFICEICNKGFQRDQNLQLHRR-GHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKH-FSRK  135 (488)
Q Consensus        58 ~~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H-~r~H  135 (488)
                      ..+++||.|++|++.|.....|..|++ .|.+.           .++++|.|++|       ++.|.....|.+| +++|
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~-----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV-----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC-----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTS
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC-----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhc
Confidence            456778888888888888888888887 47310           15678888887       8888888888888 7888


Q ss_pred             cCCccccccccC
Q 011334          136 HGEKKWKCEKCS  147 (488)
Q Consensus       136 tgeKpy~C~~Cg  147 (488)
                      ++++||+|.++.
T Consensus        75 tgekpy~C~~~~   86 (102)
T 2ghf_A           75 PGEENFKLTMVK   86 (102)
T ss_dssp             TTCCCEEEEECC
T ss_pred             CCCCCeeCCccc
Confidence            888888887754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=8.1e-13  Score=103.95  Aligned_cols=64  Identities=23%  Similarity=0.445  Sum_probs=51.0

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcccc
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKH  136 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Ht  136 (488)
                      .+.++++|+|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|.+|+++|+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHT--------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC--------------CCCSEECTTT-------CCEESCHHHHHHHHHHHC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcC--------------CCCCEECCCC-------CchhCCHHHHHHHHHhcC
Confidence            4456677888888888888888888888886              6778888887       888888888888888888


Q ss_pred             CCccc
Q 011334          137 GEKKW  141 (488)
Q Consensus       137 geKpy  141 (488)
                      +++||
T Consensus        70 ~~kp~   74 (74)
T 2lce_A           70 GEKPY   74 (74)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            88775

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=5.5e-13  Score=111.70  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             cccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCcc-CChhhhhhhhccccCCccccccccCcc
Q 011334           71 KGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRAL-GDLTGIKKHFSRKHGEKKWKCEKCSKK  149 (488)
Q Consensus        71 K~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F-~~~s~L~~H~r~HtgeKpy~C~~Cgk~  149 (488)
                      ..|.....|..|++.|.              ++++|.|++|       ++.| .....|+.|+++| +++||+|.+|+|.
T Consensus        14 ~~~~~~~~~~~~~~~~~--------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~   71 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV--------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQ   71 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH--------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCC
T ss_pred             CCCCCchHHHHHHHHhc--------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCe
Confidence            45677788999999996              7899999998       9999 9999999999999 9999999999999


Q ss_pred             ccchhhhhhh-hcccCCcce
Q 011334          150 YAVQSDWKAH-SKTCGTREY  168 (488)
Q Consensus       150 F~~ks~L~~H-~rt~geKpy  168 (488)
                      |..+..|++| +++|.++||
T Consensus        72 F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           72 LRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSHHHHHHHHHHHTCCCSS
T ss_pred             eCCHHHHHHHhHHhcCCCCC
Confidence            9999999999 777777775

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.33  E-value=7.5e-13  Score=98.40  Aligned_cols=55  Identities=25%  Similarity=0.483  Sum_probs=44.2

Q ss_pred             CCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |++||+|.+|++.|.....|.+|+++ +++++|.|+ |++.|.++..|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46788898899999888889888888 678889998 99999999999999888864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.29  E-value=7.5e-14  Score=121.41  Aligned_cols=110  Identities=11%  Similarity=0.009  Sum_probs=85.2

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCcccc------chhhhhhhhcccCCcceecC-CC
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA------VQSDWKAHSKTCGTREYKCD-CG  173 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~------~ks~L~~H~rt~geKpy~C~-Cg  173 (488)
                      .+.++|.|..+++     ...|.....+..| .....++++.|++|.+.|.      ....|..|++.++++||.|+ |+
T Consensus         8 ~~~k~~~~~~k~~-----~~~~s~ee~~~~~-~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~   81 (129)
T 2wbt_A            8 SGSKKYLSNHKGI-----FIHVTLEELKRYH-QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCL   81 (129)
T ss_dssp             TTCCGGGGCSSCE-----EEECCHHHHHHHT-TSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTC
T ss_pred             ccccccccccCCe-----eeeecHHhhhccc-cCChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCC
Confidence            4788999887644     3334332222222 2334567899999887766      67778888866899999999 99


Q ss_pred             CccCChHHHHHHHHHhcCCCccchhhhchhccccCCCcccccCCC
Q 011334          174 TLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFRTDHTV  218 (488)
Q Consensus       174 KsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~~~~~~  218 (488)
                      +.|.+...|..|+++|  +++|.|.+|++.|.....|..|....+
T Consensus        82 k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           82 MPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             CEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             cccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            9999999999999998  889999999999999999987765543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=103.57  Aligned_cols=61  Identities=25%  Similarity=0.514  Sum_probs=53.4

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cC---CcceecC-CCCccCChHHHHHHHHHhc-CCCc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CG---TREYKCD-CGTLFSRKDSFITHRAFCD-ALAE  194 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~g---eKpy~C~-CgKsFs~ks~L~~H~r~H~-~~~~  194 (488)
                      .|++++||+|++|++.|..+..|.+|+++ ++   +++|.|+ |++.|.++..|.+|++.+| ++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            48899999999999999999999999998 43   8999999 9999999999999996554 4443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.8e-12  Score=99.77  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             cCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334           58 LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus        58 ~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      +.++++|.|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|.+|+++|++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHC--------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGC--------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC--------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhC
Confidence            445566777777777777777777776665              5666777666       6667777777777766666


Q ss_pred             Cccc
Q 011334          138 EKKW  141 (488)
Q Consensus       138 eKpy  141 (488)
                      ++|.
T Consensus        63 ~~p~   66 (70)
T 1x5w_A           63 DMSG   66 (70)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.28  E-value=2.2e-12  Score=106.14  Aligned_cols=62  Identities=13%  Similarity=0.308  Sum_probs=53.8

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHH-HhcCC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRA-FCDAL  192 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r-~H~~~  192 (488)
                      .+..+..+++|.|++|++.|..+..|++|+++ +++|||.|+ |+|.|.++..|.+|++ +|..+
T Consensus        19 ~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34567788899999999999999999999999 789999999 9999999999999975 45443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=5.8e-12  Score=98.61  Aligned_cols=64  Identities=25%  Similarity=0.405  Sum_probs=44.9

Q ss_pred             ccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhcc
Q 011334           55 PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSR  134 (488)
Q Consensus        55 ~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~  134 (488)
                      .++|.++++|.|++|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|.+|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT--------------GEKPYKCLEC-------GKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG--------------CSCCEECSSS-------CCEESSHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcC--------------CCCCeECCCC-------CcccCCHHHHHHHHHh
Confidence            345666677777777777777777777777775              5667777776       7777777777777777


Q ss_pred             ccCCc
Q 011334          135 KHGEK  139 (488)
Q Consensus       135 HtgeK  139 (488)
                      |+++.
T Consensus        65 H~~~~   69 (72)
T 1x6e_A           65 HTSGP   69 (72)
T ss_dssp             HHSSS
T ss_pred             cCCCC
Confidence            76653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.23  E-value=5.9e-12  Score=93.48  Aligned_cols=54  Identities=28%  Similarity=0.501  Sum_probs=40.1

Q ss_pred             cccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      ||+|++|++.|.....|.+|+++ +++++|.|+ |++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57777777777777777777777 566777777 7777777777777777776653

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=6.4e-12  Score=98.20  Aligned_cols=63  Identities=19%  Similarity=0.514  Sum_probs=53.7

Q ss_pred             hhhhhc-cccCCcccccc--ccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhc
Q 011334          128 IKKHFS-RKHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       128 L~~H~r-~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      +..|.. +|.++++|+|+  .|++.|..+..|.+|+++ +++++|.|+ |++.|.++..|.+|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            444443 67889999997  599999999999999998 788999999 9999999999999999873

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.6e-13  Score=103.48  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=62.1

Q ss_pred             hHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhh
Q 011334           76 DQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSD  155 (488)
Q Consensus        76 ~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~  155 (488)
                      ...|..|+++|.              ++++|.|++|       ++.|.....|..       +++|+|++|++.|.....
T Consensus         3 ~~~l~~H~~~h~--------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~   54 (73)
T 2ctu_A            3 SGSSGKRQKIHL--------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAA   54 (73)
T ss_dssp             CCSCCCCCCCCC--------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCS
T ss_pred             chhHHHHHHHhC--------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHH
Confidence            345777888886              7899999999       999999988877       789999999999999999


Q ss_pred             hhhhhcc-cCCcceecC-C
Q 011334          156 WKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       156 L~~H~rt-~geKpy~C~-C  172 (488)
                      |.+|+++ +++++|.|+ |
T Consensus        55 l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           55 LNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHhhcCCCCCCCCCC
Confidence            9999999 788999998 7

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=2e-11  Score=91.70  Aligned_cols=53  Identities=28%  Similarity=0.715  Sum_probs=36.6

Q ss_pred             ccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHH-HHhcC
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHR-AFCDA  191 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~-r~H~~  191 (488)
                      |||+|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|..|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            467777777777777777777776 566777777 777777777777775 45544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=92.00  Aligned_cols=54  Identities=20%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|++.|..+..|.+|+++
T Consensus         1 g~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            3679999998       99999999999999999999999999999999999999999988

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.14  E-value=4e-11  Score=98.60  Aligned_cols=58  Identities=17%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             CCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhh-ccccCC
Q 011334           60 ATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHF-SRKHGE  138 (488)
Q Consensus        60 ~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~-r~Htge  138 (488)
                      ..++|.|++|++.|.+...|.+|+++|+              ++++|.|++|       ++.|.....|.+|+ ++|++|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~--------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLH--------------AAQVFPCKYC-------PATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTS--------------CSSSEECTTS-------SCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhcc--------------CCCccCCCCC-------CCEeCCHHHHHHhCcccCcCC
Confidence            3456667777777777777777766665              5666666666       66666666666664 345554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.13  E-value=4.6e-11  Score=88.57  Aligned_cols=56  Identities=25%  Similarity=0.466  Sum_probs=34.4

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      ||.|++|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT--------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS--------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC--------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            4566666666666666666666664              4556666665       666666666666666665554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=5.6e-11  Score=94.01  Aligned_cols=66  Identities=18%  Similarity=0.432  Sum_probs=44.8

Q ss_pred             hcCccccCCCCceecCccccccCChHHHHHHHH-hcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhh
Q 011334           52 ALSPKTLMATNRFICEICNKGFQRDQNLQLHRR-GHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKK  130 (488)
Q Consensus        52 ~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~  130 (488)
                      ..|.++|.++++|.|++|++.|.....|..|++ .|.             ..+++|.|++|       ++.|.....|.+
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------------~~~~~~~C~~C-------~~~f~~~~~L~~   63 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT-------------ENVAKFHCPHC-------DTVIARKSDLGV   63 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------------SSCSSEECSSS-------SCEESSHHHHHH
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------------CCCCccCCCCC-------CCccCCHHHHHH
Confidence            346667777777777777777777777777776 453             12367777776       777777777777


Q ss_pred             hhccccC
Q 011334          131 HFSRKHG  137 (488)
Q Consensus       131 H~r~Htg  137 (488)
                      |+++|++
T Consensus        64 H~~~~H~   70 (77)
T 2ct1_A           64 HLRKQHS   70 (77)
T ss_dssp             HHHHTSC
T ss_pred             HHHHhCC
Confidence            7776543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.5e-11  Score=94.68  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             cCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhh-cccc
Q 011334           58 LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHF-SRKH  136 (488)
Q Consensus        58 ~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~-r~Ht  136 (488)
                      |.++++|+|++|++.|.....|..|+++|++.           .++++|.|++|       ++.|.....|.+|+ +.|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~-----------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAET-----------VAALRFPCEFC-------GKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHH-----------TTTCCEECTTT-------CCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc-----------CCCcccCCCCC-------CchhCCHHHHHHHHHHhCC
Confidence            45666777777777777777777777776400           02566777666       66677777777776 3455


Q ss_pred             CCccccc
Q 011334          137 GEKKWKC  143 (488)
Q Consensus       137 geKpy~C  143 (488)
                      ++++...
T Consensus        64 ~~~~~~~   70 (78)
T 2d9h_A           64 ALLLAPQ   70 (78)
T ss_dssp             TTSSCCS
T ss_pred             CCCCCcc
Confidence            5555443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.9e-11  Score=93.13  Aligned_cols=54  Identities=19%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCccccccccCccccchhhhhhhhcccCCcceecC--CCCccCChHHHHHHHHHhcC
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD--CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~--CgKsFs~ks~L~~H~r~H~~  191 (488)
                      +++||+|+.|++.|. ...|..|+++++++||.|+  |++.|..++.|..|+++|..
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            445555555555555 5555555555555555554  56656555556666555543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=5.5e-11  Score=90.98  Aligned_cols=54  Identities=22%  Similarity=0.474  Sum_probs=28.3

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhcc-c-cCCccccccccCccccchhhhhhhhcc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSR-K-HGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~-H-tgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ++++|.|++|       ++.|.....|.+|+++ | .+++||+|++|++.|..+..|.+|+++
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            7 GEHTYRCKVC-------SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             ETTEEECTTT-------CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCcceECCCC-------cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            4455555554       5555555555555554 3 345555555555555555555555554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=7.9e-11  Score=96.37  Aligned_cols=62  Identities=18%  Similarity=0.221  Sum_probs=49.8

Q ss_pred             CceecCccccccCChHHHHHHHHh-cCCCcccccccccccccCce--------eecCCCcccCCCCCCccCChhhhhhhh
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRG-HNLPWKLRQRTNKDVIKKKV--------YICPEKTCVHHEPSRALGDLTGIKKHF  132 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~-H~~p~~~~~~~~~~~~~~kp--------y~C~~C~C~~~~c~k~F~~~s~L~~H~  132 (488)
                      ..|.|++|++.|.....|..|+++ |.              ++++        |.|++|       ++.|.....|.+|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~--------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~   82 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV--------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHI   82 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT--------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc--------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHH
Confidence            347899999999999999999998 65              4444        677776       78888888888888


Q ss_pred             ccccCCcccccc
Q 011334          133 SRKHGEKKWKCE  144 (488)
Q Consensus       133 r~HtgeKpy~C~  144 (488)
                      ++|++++||+|+
T Consensus        83 ~~H~~~k~~~C~   94 (95)
T 2ej4_A           83 RVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHTCCCCSSC
T ss_pred             HhcCCCCCCCCC
Confidence            888888888775

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.03  E-value=2.2e-10  Score=85.90  Aligned_cols=42  Identities=21%  Similarity=0.526  Sum_probs=20.7

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhhh
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS  160 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~  160 (488)
                      ++.|.....|.+|+++|++++||+|++|++.|..+..|.+|+
T Consensus         9 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            9 TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            444444444444444444444455555555555555555553

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=82.66  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            577888888888888888888888888888887 677888887 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=82.73  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=34.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            577788888888888888888888888888877 577888887 6

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.00  E-value=1.2e-10  Score=82.93  Aligned_cols=43  Identities=21%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 567777776 5

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.2e-10  Score=82.85  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            467777777777777777777777777777777 566777776 5

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.00  E-value=1.2e-10  Score=82.87  Aligned_cols=43  Identities=28%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 567777776 5

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.00  E-value=1.2e-10  Score=82.62  Aligned_cols=43  Identities=21%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577777777777777777777777777777777 577777777 6

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.2e-10  Score=82.67  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=32.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            477777777777777777777777777777777 567777776 6

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=82.40  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 577788887 6

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=82.19  Aligned_cols=43  Identities=30%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777766 566777776 5

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=82.05  Aligned_cols=43  Identities=26%  Similarity=0.453  Sum_probs=35.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            577888888888888888888888888888887 677888887 6

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=9.6e-11  Score=83.44  Aligned_cols=42  Identities=21%  Similarity=0.375  Sum_probs=26.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            456666666666666666666666666666665 455666665

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=82.44  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477778888888888888888888888888777 577778777 6

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=82.43  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 567777776 5

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.5e-10  Score=82.16  Aligned_cols=43  Identities=21%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466777777777777777777777777777766 566777776 5

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.7e-10  Score=82.15  Aligned_cols=43  Identities=23%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477777777888888888888888888888777 577777777 6

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=82.50  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776 5

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.2e-10  Score=81.59  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=34.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            377788888888888888888888888888877 677888887 6

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=82.54  Aligned_cols=42  Identities=21%  Similarity=0.452  Sum_probs=27.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence            466666666666666666666666666666666 556666665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.3e-10  Score=82.64  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=26.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            466666666666666666666666666666666 456666665

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.1e-10  Score=93.82  Aligned_cols=59  Identities=15%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             cccccccCccccchhhhhhhhcc-c-CCcc--------eecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-C-GTRE--------YKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~-geKp--------y~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      .|+|..|++.|.....|.+|+++ | ++++        |.|+ |++.|.++..|..|+++|+++++|.|.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            35666666667666666666665 4 3344        7888 888888888888888888888888875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.5e-10  Score=82.25  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777777777777777777777777777777 567777776 6

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.3e-10  Score=82.49  Aligned_cols=42  Identities=21%  Similarity=0.408  Sum_probs=26.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            356666666666666666666666666666666 456666665

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.4e-10  Score=82.60  Aligned_cols=43  Identities=16%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577777777777777777777777777777777 567777776 6

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=82.22  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            477777777777777777777777777777777 567777777 6

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=81.70  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377788888888888888888888888888877 577888887 6

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=82.22  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=82.23  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 566777776 5

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.3e-10  Score=82.62  Aligned_cols=42  Identities=24%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            456666666666666666666666666666666 456666665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.97  E-value=1.8e-10  Score=81.78  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=32.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            467777777777777777777777777777777 567777776 6

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.97  E-value=1.9e-10  Score=81.91  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366777777777777777777777777777777 567777776 5

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=82.18  Aligned_cols=43  Identities=28%  Similarity=0.525  Sum_probs=34.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 577888887 6

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.3e-10  Score=82.65  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466777777777777777777777777777766 566777776 5

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.2e-10  Score=81.51  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367777777788888888888777777777777 567777777 6

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=82.18  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=26.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            456666666666666666666666666666665 455666665

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.7e-10  Score=81.20  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45566666666666666666666666666655 455666665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=82.45  Aligned_cols=42  Identities=24%  Similarity=0.405  Sum_probs=25.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            455666666666666666666666666666655 455666665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.8e-10  Score=81.95  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence            456666666666666666666666666666666 456666665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=81.52  Aligned_cols=43  Identities=28%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366677777777777777777777777777776 566777776 5

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.6e-10  Score=82.10  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466666666666666666666666666666666 466666666 5

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=81.59  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 566777776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.94  E-value=2.6e-10  Score=81.13  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776 5

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=81.28  Aligned_cols=43  Identities=28%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366777777777777777777777777777777 567777776 5

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.9e-10  Score=81.77  Aligned_cols=43  Identities=28%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            466666666667776676666666666666666 566666666 5

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.94  E-value=1.1e-10  Score=89.33  Aligned_cols=52  Identities=19%  Similarity=0.347  Sum_probs=41.3

Q ss_pred             hhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHH
Q 011334          128 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSF  182 (488)
Q Consensus       128 L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L  182 (488)
                      |..|+++|++++||+|+.|++.|.....|.   ++ ++++||.|+ |++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            567888888888888888888888887776   45 677888888 88888766544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.2e-10  Score=80.73  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=34.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhc-c-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK-T-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~r-t-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|++ + ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            47778888888888888888888888888887 6 577788887 6

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.94  E-value=6.7e-10  Score=86.53  Aligned_cols=44  Identities=18%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ++.|.....|.+|+++|++++||+|++|++.|.....|.+|+++
T Consensus        28 ~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           28 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            44444444455554444445555555555555555555555443

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.94  E-value=3.8e-10  Score=87.88  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=31.5

Q ss_pred             ccCCccccccc--cCccccchhhhhhhhcc-cCCcceec--C-CCCccCChHHHHHHHHHh
Q 011334          135 KHGEKKWKCEK--CSKKYAVQSDWKAHSKT-CGTREYKC--D-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       135 HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt-~geKpy~C--~-CgKsFs~ks~L~~H~r~H  189 (488)
                      +..+++|.|..  |++.|.....|.+|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34455556655  66666666666666555 45556666  3 666666666666665543

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=81.20  Aligned_cols=43  Identities=35%  Similarity=0.514  Sum_probs=32.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            367777777777777777777777777777777 567777776 6

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.9e-10  Score=80.77  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=25.0

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55566666666666666666666666666655 455666665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=80.75  Aligned_cols=41  Identities=29%  Similarity=0.517  Sum_probs=25.8

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            55666666666666666666666666666665 455666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=5.1e-10  Score=82.82  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             ccCCccccccccCccccchhhhhhhhc-c-cCCcceecC-CCCccC
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSK-T-CGTREYKCD-CGTLFS  177 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~r-t-~geKpy~C~-CgKsFs  177 (488)
                      |.+++||+|++|++.|.....|.+|++ + +++++|.|+ |++.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            445555555555555555555555554 3 344555555 555554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=8.2e-10  Score=84.90  Aligned_cols=52  Identities=17%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccc-ccCccccchhhhhhhhcc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCE-KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~-~Cgk~F~~ks~L~~H~rt  162 (488)
                      ++++|.|++|       ++.|. ...|..|+++ ++++||+|+ .|++.|..+..|.+|+++
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            4555666655       56666 6666666655 566666666 666666666666666655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.8e-10  Score=80.27  Aligned_cols=41  Identities=29%  Similarity=0.460  Sum_probs=25.9

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            55666666666666666666666666666666 456666665

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7e-10  Score=77.00  Aligned_cols=41  Identities=20%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999988 68899888

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.7e-10  Score=79.82  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=29.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            466677777777777777777777777777666 566677665

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.1e-10  Score=78.73  Aligned_cols=42  Identities=21%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888888888888888888888888888888 678888885

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.3e-10  Score=79.52  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55666666666666666666666666666655 455666665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.7e-10  Score=77.87  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=35.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            578888888888888888888888888888888 678888884

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=78.79  Aligned_cols=42  Identities=26%  Similarity=0.536  Sum_probs=34.9

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            578888888888888888888888888888888 677888885

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.88  E-value=6.7e-10  Score=77.19  Aligned_cols=41  Identities=22%  Similarity=0.479  Sum_probs=31.2

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            56777777778888888887777777777777 577777774

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.1e-10  Score=78.73  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=33.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            477788888888888888888888888888777 577788775

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=2.8e-10  Score=90.85  Aligned_cols=67  Identities=22%  Similarity=0.410  Sum_probs=59.7

Q ss_pred             hhhhhhhhccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          125 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       125 ~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      +..|..|+++|.+++||.|..|++.| ....|..|+..++++||.|+ |++.|.+ ..|..|+++|.+..
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             chHHHhhCcccCCCcccCCcccChHh-hHHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            34688999999999999999999999 49999999944899999999 9999885 89999999997754

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.9e-10  Score=78.38  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            577777777788888888887777777777777 567777775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.7e-10  Score=76.78  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=31.2

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            56777777888888888888887778777777 567777774

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.6e-10  Score=78.59  Aligned_cols=42  Identities=26%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888877 577888875

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.9e-10  Score=78.91  Aligned_cols=42  Identities=24%  Similarity=0.464  Sum_probs=32.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888777 577777775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8e-10  Score=78.47  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            477778888888888888888888888888777 577777775

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.6e-10  Score=78.90  Aligned_cols=42  Identities=29%  Similarity=0.487  Sum_probs=28.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            466667777777777777777776667666666 566666664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.3e-10  Score=78.27  Aligned_cols=42  Identities=24%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            477778888888888888888888888888777 577777775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.2e-10  Score=78.15  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888777 577777775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.2e-10  Score=78.27  Aligned_cols=42  Identities=26%  Similarity=0.488  Sum_probs=32.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            477778888888888888888888888888777 577777775

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.1e-09  Score=77.93  Aligned_cols=44  Identities=23%  Similarity=0.431  Sum_probs=41.0

Q ss_pred             hhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          157 KAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       157 ~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      ++|+++ .++++|.|+ |++.|.+++.|..|+++|.++++|.|.+|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            368888 689999999 99999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.9e-10  Score=77.93  Aligned_cols=42  Identities=24%  Similarity=0.435  Sum_probs=35.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478888888888888888888888888888888 678888884

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=7.1e-10  Score=78.62  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            355666666666666666666666666666655 455666553

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.85  E-value=7e-10  Score=78.90  Aligned_cols=42  Identities=24%  Similarity=0.507  Sum_probs=26.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            356666666666666666666666666666666 455666664

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.2e-10  Score=78.28  Aligned_cols=42  Identities=24%  Similarity=0.496  Sum_probs=31.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 567777775

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=77.30  Aligned_cols=43  Identities=19%  Similarity=0.498  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            68888 689999999 99999999999999999999999999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.3e-10  Score=79.11  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            466677777777777777777777777777666 566666664

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.4e-10  Score=78.09  Aligned_cols=42  Identities=21%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            467777777777777777777777777777777 567777775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.8e-10  Score=77.53  Aligned_cols=42  Identities=26%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            466777777777777777777777777777766 566777764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.3e-10  Score=78.27  Aligned_cols=42  Identities=26%  Similarity=0.495  Sum_probs=27.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            466666666666666666666666666666666 456666664

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.5e-09  Score=76.90  Aligned_cols=43  Identities=21%  Similarity=0.455  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.5e-09  Score=77.04  Aligned_cols=43  Identities=26%  Similarity=0.523  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 688999999 99999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=77.80  Aligned_cols=42  Identities=31%  Similarity=0.483  Sum_probs=34.0

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            367788888888888888888888888888887 677888885

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=77.12  Aligned_cols=43  Identities=21%  Similarity=0.531  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.83  E-value=1.3e-09  Score=77.29  Aligned_cols=43  Identities=23%  Similarity=0.580  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.83  E-value=1.5e-09  Score=77.11  Aligned_cols=43  Identities=21%  Similarity=0.521  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=9e-10  Score=78.30  Aligned_cols=42  Identities=19%  Similarity=0.437  Sum_probs=27.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            356666666666666666666666666666666 566666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=9.2e-10  Score=77.40  Aligned_cols=42  Identities=21%  Similarity=0.423  Sum_probs=32.8

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            577788888888888888888888888888777 577777774

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.1e-09  Score=77.88  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            466777777777777777777777777777776 566777774

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.5e-09  Score=77.04  Aligned_cols=43  Identities=23%  Similarity=0.489  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.5e-09  Score=77.00  Aligned_cols=43  Identities=21%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57888 688999999 99999999999999999999999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=77.69  Aligned_cols=42  Identities=21%  Similarity=0.440  Sum_probs=30.4

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            366777777777777777777777777777777 566777774

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.5e-09  Score=76.92  Aligned_cols=43  Identities=21%  Similarity=0.512  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=9.3e-10  Score=77.36  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            467777777777777777777777777777777 566777763

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.7e-09  Score=76.76  Aligned_cols=43  Identities=19%  Similarity=0.533  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.7e-09  Score=76.60  Aligned_cols=43  Identities=21%  Similarity=0.474  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            58888 688999999 99999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=77.02  Aligned_cols=43  Identities=19%  Similarity=0.511  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.82  E-value=1.4e-09  Score=77.12  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.2e-09  Score=75.92  Aligned_cols=40  Identities=23%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            67788888888888888888888888888888 67788877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=76.74  Aligned_cols=43  Identities=19%  Similarity=0.492  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            68888 689999999 99999999999999999999999999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=77.69  Aligned_cols=42  Identities=26%  Similarity=0.507  Sum_probs=34.9

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 677888885

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=77.09  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=35.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367888888888888888888888888888888 678888886

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=77.13  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=76.39  Aligned_cols=43  Identities=23%  Similarity=0.549  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.4e-09  Score=77.19  Aligned_cols=43  Identities=21%  Similarity=0.580  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=77.03  Aligned_cols=43  Identities=21%  Similarity=0.538  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57777 689999999 99999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=75.60  Aligned_cols=42  Identities=19%  Similarity=0.386  Sum_probs=39.4

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      |+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677 689999999 99999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=76.71  Aligned_cols=43  Identities=21%  Similarity=0.476  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 688999999 99999999999999999999999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=9.8e-10  Score=77.89  Aligned_cols=42  Identities=26%  Similarity=0.493  Sum_probs=24.6

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            355566666666666666666666666666555 455555554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.4e-09  Score=77.24  Aligned_cols=43  Identities=16%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68888 688999999 99999999999999999999999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=76.21  Aligned_cols=40  Identities=25%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      |+++|++++||+|++|++.|.....|.+|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            66777777777777777777777777777777 56777766

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.4e-09  Score=77.16  Aligned_cols=40  Identities=28%  Similarity=0.485  Sum_probs=24.6

Q ss_pred             hccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            4556666666666666666666666666665 455666665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=76.67  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.80  E-value=1e-09  Score=81.01  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=35.3

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcce
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREY  168 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy  168 (488)
                      ++.|.....|..|+++|++++||.|++|++.|.....|.+|+++ ++++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            56666677777777777777777777777777777777777766 566665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1e-09  Score=78.02  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 566777775

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=76.94  Aligned_cols=43  Identities=19%  Similarity=0.586  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.2e-09  Score=77.59  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC  146 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~C  146 (488)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8899999998       9999999999999999999999999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2e-09  Score=76.29  Aligned_cols=43  Identities=21%  Similarity=0.406  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=77.02  Aligned_cols=43  Identities=21%  Similarity=0.550  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.80  E-value=2.1e-09  Score=76.34  Aligned_cols=43  Identities=21%  Similarity=0.480  Sum_probs=40.3

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788 688999999 99999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1e-09  Score=77.20  Aligned_cols=42  Identities=17%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|.....|.+|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 678888873

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.9e-09  Score=76.39  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.+...|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=2.2e-09  Score=76.17  Aligned_cols=43  Identities=21%  Similarity=0.468  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47777 689999999 99999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.80  E-value=2.1e-09  Score=76.14  Aligned_cols=43  Identities=16%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.80  E-value=5.1e-09  Score=81.37  Aligned_cols=54  Identities=22%  Similarity=0.470  Sum_probs=28.3

Q ss_pred             CCceecCc--cccccCChHHHHHHHHhcCCCcccccccccccccCceeecCC--CcccCCCCCCccCChhhhhhhhccc
Q 011334           61 TNRFICEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRK  135 (488)
Q Consensus        61 ~kpy~C~~--CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~--C~C~~~~c~k~F~~~s~L~~H~r~H  135 (488)
                      .++|.|.+  |++.|.....|..|+++|+              ++++|.|++  |       ++.|.....|.+|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHT--------------GEKPFSCSWKGC-------ERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHS--------------SSCSEECCCTTC-------CCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcC--------------CCCCccCCCCCC-------CcccCCHHHHHhHhhcC
Confidence            34555555  5555555555555555554              445555533  4       55555555555555443

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.80  E-value=1.5e-09  Score=75.27  Aligned_cols=40  Identities=15%  Similarity=0.387  Sum_probs=27.8

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56667777777777777777777777777666 56666666

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=76.54  Aligned_cols=43  Identities=19%  Similarity=0.504  Sum_probs=40.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            47888 689999999 99999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=76.61  Aligned_cols=43  Identities=21%  Similarity=0.524  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.2e-09  Score=76.16  Aligned_cols=43  Identities=19%  Similarity=0.544  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58888 689999999 99999999999999999999999999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.3e-09  Score=76.19  Aligned_cols=43  Identities=23%  Similarity=0.469  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|.+|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            37777 689999999 99999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.1e-09  Score=76.26  Aligned_cols=43  Identities=21%  Similarity=0.478  Sum_probs=40.5

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            57888 689999999 99999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.2e-09  Score=75.25  Aligned_cols=43  Identities=16%  Similarity=0.377  Sum_probs=40.2

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47777 688999999 99999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.5e-09  Score=77.08  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=36.8

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC  146 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~C  146 (488)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7899999999       9999999999999999999999999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.3e-09  Score=76.03  Aligned_cols=43  Identities=19%  Similarity=0.406  Sum_probs=40.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|.+|+++|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37777 688999999 99999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.78  E-value=2.7e-09  Score=75.76  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47777 689999999 99999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.2e-09  Score=75.29  Aligned_cols=43  Identities=16%  Similarity=0.415  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            47777 689999999 99999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.8e-09  Score=76.59  Aligned_cols=43  Identities=16%  Similarity=0.500  Sum_probs=40.6

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58888 789999999 99999999999999999999999999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1e-09  Score=77.88  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            466666666666666666666666666666666 456666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=2.4e-09  Score=75.31  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |+++|++++||+|++|++.|.....|.+|+++ ++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            66777777777777777777777777777777 577777774

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.5e-09  Score=76.06  Aligned_cols=42  Identities=21%  Similarity=0.477  Sum_probs=39.6

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      |+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777 689999999 99999999999999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.9e-09  Score=76.60  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cC-CcceecC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CG-TREYKCD  171 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~g-eKpy~C~  171 (488)
                      .|+++|++++||+|++|++.|.....|.+|+++ ++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467777777777777777777777777777777 45 6777774

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.6e-09  Score=76.84  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=36.9

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCcccccccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKC  146 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~C  146 (488)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7899999998       9999999999999999999999999998

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=76.59  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=25.4

Q ss_pred             hccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4556666666666666666666666666666 456666665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.76  E-value=4e-10  Score=86.11  Aligned_cols=58  Identities=14%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhh
Q 011334           79 LQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA  158 (488)
Q Consensus        79 L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~  158 (488)
                      |..|+++|.              ++++|.|++|       ++.|.....|.   ++|++++||+|++|++.|.....+..
T Consensus         2 L~~h~~~H~--------------~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            2 IETDERDST--------------NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             CCCCSSSCC--------------SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred             hhhHHHHcC--------------CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCccccc
Confidence            345677775              8999999999       99999988886   88999999999999999999888765


Q ss_pred             hh
Q 011334          159 HS  160 (488)
Q Consensus       159 H~  160 (488)
                      |.
T Consensus        58 ~~   59 (62)
T 1vd4_A           58 KK   59 (62)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.4e-09  Score=75.40  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      .|+++|++++||+|++|++.|.....|.+|+++ ++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            467777777777777777777777777777777 56777766

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=3.7e-09  Score=78.12  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=42.4

Q ss_pred             ccCceeecCCCcccCCCCCCccCChhhhhhhhc-cccCCccccccccCccccc
Q 011334          101 IKKKVYICPEKTCVHHEPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAV  152 (488)
Q Consensus       101 ~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r-~HtgeKpy~C~~Cgk~F~~  152 (488)
                      .++++|.|++|       ++.|.....|.+|++ +|++++||+|++|++.|.+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            47899999998       999999999999997 9999999999999999975

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=2.5e-09  Score=75.64  Aligned_cols=40  Identities=20%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CC
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CG  173 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-Cg  173 (488)
                      .|++++||+|++|++.|..+..|.+|+++ +++++|.|+ ||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            34555555555555555555555555555 455555555 53

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.8e-09  Score=75.02  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            36777 688999999 99999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.5e-09  Score=75.84  Aligned_cols=43  Identities=19%  Similarity=0.424  Sum_probs=40.2

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            47777 689999999 99999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.2e-09  Score=74.26  Aligned_cols=43  Identities=16%  Similarity=0.431  Sum_probs=39.8

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47777 689999999 99999999999999999999999999875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=3.8e-09  Score=75.92  Aligned_cols=29  Identities=21%  Similarity=0.364  Sum_probs=14.0

Q ss_pred             CCccCChhhhhhhhccccCCccccccccC
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWKCEKCS  147 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~C~~Cg  147 (488)
                      ++.|.....|.+|+++|++++||+|++|+
T Consensus        19 ~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A           19 GKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             TEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            44444444444444444444444444444

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.72  E-value=5.2e-09  Score=77.19  Aligned_cols=49  Identities=8%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             Cccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCcc
Q 011334          147 SKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       147 gk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      +|.|.....|..|+++ +++++|.|+ |++.|...+.|..|+++|+++++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4789999999999999 789999999 999999999999999999998876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5e-09  Score=74.37  Aligned_cols=43  Identities=21%  Similarity=0.495  Sum_probs=40.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHH-HhcCCCccchhhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRA-FCDALAEESTRLA  200 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r-~H~~~~~~~C~~C  200 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|++ +|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            47788 689999999 9999999999999999 9999999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=8.6e-09  Score=72.89  Aligned_cols=42  Identities=24%  Similarity=0.533  Sum_probs=39.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.69  E-value=8.1e-09  Score=73.27  Aligned_cols=42  Identities=19%  Similarity=0.460  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=5.4e-09  Score=74.28  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=24.8

Q ss_pred             hccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      +++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            4556666666666666666666666666666 456666664

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.1e-09  Score=73.15  Aligned_cols=42  Identities=17%  Similarity=0.442  Sum_probs=39.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58888 689999999 9999999999999999999999999964

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6e-09  Score=74.31  Aligned_cols=42  Identities=19%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             hhccccCCcccccc--ccCccccchhhhhhhhcc-cCCcceecC-C
Q 011334          131 HFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREYKCD-C  172 (488)
Q Consensus       131 H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy~C~-C  172 (488)
                      |.++|++++||+|.  .|++.|..+..|.+|+++ ++++||+|+ |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55677777777776  677777777777777777 567777776 6

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.4e-08  Score=71.95  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=40.2

Q ss_pred             CccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCC
Q 011334           54 SPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEK  111 (488)
Q Consensus        54 ~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C  111 (488)
                      +.++|.++++|.|++|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS--------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            3467889999999999999999999999999997              7899999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.1e-08  Score=72.41  Aligned_cols=42  Identities=17%  Similarity=0.475  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788 689999999 9999999999999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.2e-09  Score=72.75  Aligned_cols=42  Identities=17%  Similarity=0.443  Sum_probs=38.8

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57788 689999999 9999999999999999999999999964

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.2e-09  Score=73.12  Aligned_cols=42  Identities=21%  Similarity=0.619  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.2e-09  Score=72.76  Aligned_cols=42  Identities=19%  Similarity=0.491  Sum_probs=39.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58888 689999999 9999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.2e-09  Score=73.22  Aligned_cols=42  Identities=26%  Similarity=0.613  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.8e-09  Score=73.68  Aligned_cols=41  Identities=20%  Similarity=0.474  Sum_probs=26.5

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      |.++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            34566666666666666666666666666666 466666663

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=72.44  Aligned_cols=42  Identities=29%  Similarity=0.528  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788 689999999 9999999999999999999999999964

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=9.2e-09  Score=73.85  Aligned_cols=41  Identities=20%  Similarity=0.377  Sum_probs=38.6

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCC
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGT  174 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgK  174 (488)
                      .|.++++|+|.+|++.|.....|.+|+++ ++++||.|+ |+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            57789999999999999999999999999 689999999 997

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9e-09  Score=72.90  Aligned_cols=42  Identities=21%  Similarity=0.588  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            57788 689999999 9999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.2e-09  Score=72.75  Aligned_cols=42  Identities=21%  Similarity=0.483  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.9e-09  Score=72.57  Aligned_cols=42  Identities=19%  Similarity=0.531  Sum_probs=38.8

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.8e-09  Score=72.82  Aligned_cols=42  Identities=17%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=72.01  Aligned_cols=41  Identities=24%  Similarity=0.560  Sum_probs=38.4

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            58888 689999999 999999999999999999999999986

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.4e-09  Score=72.92  Aligned_cols=42  Identities=14%  Similarity=0.491  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58888 689999999 9999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=8.8e-09  Score=72.95  Aligned_cols=42  Identities=19%  Similarity=0.504  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1e-08  Score=72.62  Aligned_cols=42  Identities=19%  Similarity=0.510  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788 688999999 9999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.3e-08  Score=72.16  Aligned_cols=42  Identities=17%  Similarity=0.455  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47777 688999999 9999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.65  E-value=1.4e-08  Score=70.44  Aligned_cols=40  Identities=33%  Similarity=0.631  Sum_probs=36.9

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      |+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5677 689999999 999999999999999999999999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=72.07  Aligned_cols=42  Identities=21%  Similarity=0.517  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            47788 689999999 9999999999999999999999999964

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=72.31  Aligned_cols=42  Identities=26%  Similarity=0.520  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|.+|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57788 689999999 9999999999999999999999999964

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.7e-08  Score=70.57  Aligned_cols=41  Identities=20%  Similarity=0.518  Sum_probs=38.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            57888 689999999 999999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.1e-08  Score=70.56  Aligned_cols=38  Identities=18%  Similarity=0.523  Sum_probs=25.4

Q ss_pred             ccccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      ++|++++||+|++|++.|.....|.+|+++ ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            356666677777777777777777777666 56666666

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.1e-08  Score=72.40  Aligned_cols=42  Identities=21%  Similarity=0.536  Sum_probs=38.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999964

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.9e-08  Score=69.52  Aligned_cols=40  Identities=23%  Similarity=0.512  Sum_probs=36.7

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      |+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5677 688999999 999999999999999999999999883

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.5e-08  Score=70.99  Aligned_cols=41  Identities=17%  Similarity=0.514  Sum_probs=38.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ .+++||.|+ |++.|.++..|..|+++|+++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            58888 689999999 999999999999999999999999884

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=71.99  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             ccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCC
Q 011334           55 PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEK  111 (488)
Q Consensus        55 ~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C  111 (488)
                      .++|.++++|.|++|++.|.....|..|+++|+              ++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT--------------REKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH--------------HCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            457888999999999999999999999999996              7899999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2e-08  Score=71.22  Aligned_cols=41  Identities=15%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      .|+++ .++++|.|+ |++.|.++..|.+|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            47777 688999999 999999999999999999999999996

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.4e-08  Score=71.05  Aligned_cols=41  Identities=24%  Similarity=0.514  Sum_probs=38.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            57888 689999999 999999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=70.96  Aligned_cols=37  Identities=14%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      +|++++||+|++|++.|..+..|.+|+++ ++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            34445555555555555555555555444 34445444

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=71.86  Aligned_cols=42  Identities=21%  Similarity=0.508  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.+...|..|+++|.++++|.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999963

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.5e-08  Score=71.72  Aligned_cols=41  Identities=20%  Similarity=0.437  Sum_probs=38.3

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            58888 689999999 999999999999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.7e-08  Score=70.70  Aligned_cols=41  Identities=20%  Similarity=0.448  Sum_probs=38.1

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            57888 688999999 999999999999999999999999984

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.9e-08  Score=69.68  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=36.4

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      |+++ .+++||.|+ |++.|.++..|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            6777 689999999 99999999999999999999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.59  E-value=2.6e-08  Score=68.87  Aligned_cols=39  Identities=28%  Similarity=0.606  Sum_probs=36.3

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      |+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            6677 688999999 99999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.2e-08  Score=72.53  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=35.3

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEK  145 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~  145 (488)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            9 GEKPYKCQVC-------GKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCcccCCCCC-------CcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            7899999998       999999999999999999999999974

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=1.1e-09  Score=90.34  Aligned_cols=40  Identities=10%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             hccccCCccccccccCccccchhhhhhhhcc-cCCcceecC
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD  171 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~  171 (488)
                      .++|++++||+|++|++.|.....|.+|+++ ++++||+|.
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            3445555555555555555555555555555 345555554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.5e-08  Score=70.98  Aligned_cols=41  Identities=29%  Similarity=0.652  Sum_probs=38.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      .|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            47888 689999999 999999999999999999999999984

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=3.3e-08  Score=69.67  Aligned_cols=42  Identities=19%  Similarity=0.423  Sum_probs=39.2

Q ss_pred             cccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCC
Q 011334           56 KTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEK  111 (488)
Q Consensus        56 k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C  111 (488)
                      ..|.++++|.|++|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~--------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS--------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc--------------CCCCCCCcCC
Confidence            46788999999999999999999999999997              8899999998

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.3e-08  Score=69.49  Aligned_cols=40  Identities=25%  Similarity=0.587  Sum_probs=37.3

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      +|+++ +++++|.|+ |++.|.++..|..|+++|+++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            57888 789999999 99999999999999999999999876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.2e-08  Score=69.47  Aligned_cols=39  Identities=26%  Similarity=0.519  Sum_probs=36.3

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccch
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEEST  197 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C  197 (488)
                      |+++ .++++|.|+ |++.|.+++.|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6677 688999999 99999999999999999999999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.8e-08  Score=71.26  Aligned_cols=42  Identities=26%  Similarity=0.578  Sum_probs=38.7

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +|+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57888 689999999 9999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.3e-08  Score=70.91  Aligned_cols=42  Identities=14%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC-CCccchhh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA-LAEESTRL  199 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~-~~~~~C~~  199 (488)
                      .|+++ .+++||.|+ |++.|.++..|..|+++|.+ +++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47777 688999999 99999999999999999999 99999963

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.5e-08  Score=69.30  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=39.0

Q ss_pred             CccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCC
Q 011334           54 SPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE  110 (488)
Q Consensus        54 ~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~  110 (488)
                      +.++|.++++|.|++|++.|.....|..|+++|+              ++++|.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC--------------CSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            4567889999999999999999999999999997              789999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.8e-08  Score=69.03  Aligned_cols=40  Identities=20%  Similarity=0.481  Sum_probs=36.9

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      |+++ .++++|.|+ |++.|.++..|..|+++|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            6667 688999999 999999999999999999999999984

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.54  E-value=1.7e-08  Score=83.08  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhh
Q 011334           53 LSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHF  132 (488)
Q Consensus        53 ~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~  132 (488)
                      .+..+|.++++|.|++|++.|.....|..|+++|+              ++++|.|..|       .    ....|..|.
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht--------------~ekp~~C~~~-------~----~~~~~~~~~   69 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN--------------EEFQKRAKRQ-------E----RRKQLLSKQ   69 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH--------------HHHHHHCCCC-------S----CCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC--------------CCCCcccchh-------h----hHHHHHhhh
Confidence            34456777788888888888888888888888885              6778887665       2    244566777


Q ss_pred             ccccC
Q 011334          133 SRKHG  137 (488)
Q Consensus       133 r~Htg  137 (488)
                      +.|.+
T Consensus        70 ~~~~~   74 (88)
T 1x6f_A           70 KYADG   74 (88)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            77765

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.8e-08  Score=69.63  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             cCceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccc
Q 011334          102 KKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKC  143 (488)
Q Consensus       102 ~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C  143 (488)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            7899999998       9999999999999999999999998

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.8e-08  Score=70.67  Aligned_cols=41  Identities=20%  Similarity=0.492  Sum_probs=38.0

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      +|+++ +++++|.|+ |++.|.+...|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            57888 689999999 999999999999999999999999883

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=5e-08  Score=68.76  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             CccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCC
Q 011334           54 SPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE  110 (488)
Q Consensus        54 ~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~  110 (488)
                      +..+|.++++|.|++|++.|.....|..|+++|+              ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT--------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS--------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC--------------CCCCCCCCC
Confidence            3457888999999999999999999999999997              789999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.5e-08  Score=69.41  Aligned_cols=40  Identities=25%  Similarity=0.561  Sum_probs=36.4

Q ss_pred             hcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhh
Q 011334          160 SKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRL  199 (488)
Q Consensus       160 ~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~  199 (488)
                      +++ +++++|.|+ |++.|.++..|..|+++|+++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            445 688999999 9999999999999999999999999964

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=7.1e-08  Score=67.45  Aligned_cols=41  Identities=17%  Similarity=0.307  Sum_probs=37.5

Q ss_pred             cccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCC
Q 011334           56 KTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPE  110 (488)
Q Consensus        56 k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~  110 (488)
                      +.|.++++|.|++|++.|.....|..|+++|+              ++++|.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH--------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT--------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC--------------CCCCccCCC
Confidence            46788999999999999999999999999997              789999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=8.3e-08  Score=68.21  Aligned_cols=44  Identities=27%  Similarity=0.346  Sum_probs=40.2

Q ss_pred             CccccCCCCceecC--ccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCC
Q 011334           54 SPKTLMATNRFICE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEK  111 (488)
Q Consensus        54 ~~k~~~~~kpy~C~--~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C  111 (488)
                      +.++|.++++|.|.  +|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS--------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC--------------CCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            45678899999998  89999999999999999997              7899999887

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=64.95  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=35.8

Q ss_pred             cccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeec
Q 011334           56 KTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYIC  108 (488)
Q Consensus        56 k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C  108 (488)
                      .+|.++++|.|++|++.|.....|..|+++|+              ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT--------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC--------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC--------------CCCCcCC
Confidence            46788999999999999999999999999997              7888887

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.36  E-value=1.7e-07  Score=62.76  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhcc
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |+++|++++||+|++|++.|..+..|.+|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            56666666666666666666666666666665

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.33  E-value=1.4e-07  Score=64.28  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=16.7

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcCCCccc
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDALAEES  196 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~  196 (488)
                      ++++|.|+ |++.|.+.+.|..|+++|.++++|.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            34455555 5555555555555555555554443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3e-07  Score=73.13  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             hcCccccCCCCceecCccccccCChHHHHHHHHhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhh
Q 011334           52 ALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKH  131 (488)
Q Consensus        52 ~~~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H  131 (488)
                      ..|...+.++++|.|..|++.|. ...|..|+ .|.              ++++|.|+.|       ++.|. +..|..|
T Consensus         6 ~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c--------------~~~~~~C~~C-------~~~~~-~~~l~~H   61 (75)
T 2d9k_A            6 SGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC--------------GARTELCGNC-------GRNVL-VKDLKTH   61 (75)
T ss_dssp             SCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH--------------HHCEEECSSS-------CCEEE-TTGGGTH
T ss_pred             HhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc--------------CCCceEcccC-------CCcCc-HHHHHHH
Confidence            34444555556666666666663 55566665 453              5555666555       55544 3555556


Q ss_pred             hccccCC
Q 011334          132 FSRKHGE  138 (488)
Q Consensus       132 ~r~Htge  138 (488)
                      +++|.++
T Consensus        62 ~~~c~~~   68 (75)
T 2d9k_A           62 PEVCGRE   68 (75)
T ss_dssp             HHHBTTB
T ss_pred             HHHccCC
Confidence            5555544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=1.8e-07  Score=62.73  Aligned_cols=29  Identities=24%  Similarity=0.493  Sum_probs=13.8

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      +|++++||+|++|++.|..+..|.+|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            34444444444444444444444444444

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.26  E-value=4.7e-07  Score=60.59  Aligned_cols=34  Identities=26%  Similarity=0.580  Sum_probs=30.9

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |+++ .+++||.|+ |++.|.++..|..|+++|.++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            7777 689999999 999999999999999999763

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.25  E-value=5.6e-07  Score=61.20  Aligned_cols=36  Identities=11%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             ccCCccccccccCccccchhhhhhhhcc-cCCcceec
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKC  170 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C  170 (488)
                      |++++||+|++|++.|.....|..|+++ ++++||.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            6789999999999999999999999999 68899876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=7.2e-07  Score=59.64  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHhcCCCc
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFCDALAE  194 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~  194 (488)
                      .++++|.|+ |++.|.++..|..|+++|+++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            588999999 99999999999999999988764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.20  E-value=5.1e-07  Score=59.42  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=17.4

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      ++++|.|+ |++.|.++..|..|+++|++++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            45556665 6666666666666666655543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.18  E-value=6.5e-07  Score=59.08  Aligned_cols=29  Identities=24%  Similarity=0.504  Sum_probs=13.8

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ++++|.|+ |++.|.++..|..|+++|+++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            34444444 444444444444444444443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=7.5e-07  Score=70.32  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=16.6

Q ss_pred             cCCccccccc--cCccccchhhhhhhh-cc-cCCcceec
Q 011334          136 HGEKKWKCEK--CSKKYAVQSDWKAHS-KT-CGTREYKC  170 (488)
Q Consensus       136 tgeKpy~C~~--Cgk~F~~ks~L~~H~-rt-~geKpy~C  170 (488)
                      +++|||+|..  |+|.|.++++|.+|+ ++ +++|||.|
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            4455555532  555555555555554 23 34455544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.15  E-value=1.5e-06  Score=57.14  Aligned_cols=34  Identities=21%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTRE  167 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKp  167 (488)
                      +|++++||+|.+|++.|..+..|.+|+++ ++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47899999999999999999999999999 66664

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.15  E-value=1.2e-06  Score=57.58  Aligned_cols=31  Identities=29%  Similarity=0.600  Sum_probs=22.2

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCCCccc
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDALAEES  196 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~  196 (488)
                      |||.|+ |++.|.+.+.|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            467777 7777777777777777777766653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.10  E-value=2e-06  Score=56.71  Aligned_cols=34  Identities=18%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCCcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTRE  167 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKp  167 (488)
                      +|++++||+|.+|++.|..+..|.+|+++ ++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            48899999999999999999999999999 56654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=1.3e-06  Score=58.88  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=12.9

Q ss_pred             CCcceecC-CCCccCChHHHHHH-HHHhc
Q 011334          164 GTREYKCD-CGTLFSRKDSFITH-RAFCD  190 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H-~r~H~  190 (488)
                      +++||.|+ |++.|.++..|..| +++|.
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            34444444 44445444555555 44443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.04  E-value=3.8e-06  Score=66.34  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=37.1

Q ss_pred             ccccCCCCceecCc--cccccCChHHHHHHH-HhcCCCcccccccccccccCceeecCCC
Q 011334           55 PKTLMATNRFICEI--CNKGFQRDQNLQLHR-RGHNLPWKLRQRTNKDVIKKKVYICPEK  111 (488)
Q Consensus        55 ~k~~~~~kpy~C~~--CgK~F~~~~~L~~H~-r~H~~p~~~~~~~~~~~~~~kpy~C~~C  111 (488)
                      .....++|||+|.+  |+|.|.+..+|..|+ ++|+              ++|||.|.+-
T Consensus        19 ~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT--------------gEKP~~~~~~   64 (73)
T 1x3c_A           19 PTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK--------------SDLPAFSAEV   64 (73)
T ss_dssp             SSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS--------------SCCCCCCCSC
T ss_pred             cccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC--------------CCCCcccccc
Confidence            34567889999976  999999999999997 6897              8999999764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.03  E-value=1.1e-06  Score=60.23  Aligned_cols=24  Identities=21%  Similarity=0.510  Sum_probs=11.5

Q ss_pred             CCccccccccCccccchhhhhhhh
Q 011334          137 GEKKWKCEKCSKKYAVQSDWKAHS  160 (488)
Q Consensus       137 geKpy~C~~Cgk~F~~ks~L~~H~  160 (488)
                      +||||+|++|+|.|..++.|++|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            444444444444444444444444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=3.7e-06  Score=58.27  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             cCCcceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          163 CGTREYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       163 ~geKpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +++|||+|+   |+|.|.+++.|++|+++|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            466677774   777777777777777776653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=1.9e-06  Score=57.60  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=14.6

Q ss_pred             CCcceecC-CCCccCCh-HHHHHHHHHhcC
Q 011334          164 GTREYKCD-CGTLFSRK-DSFITHRAFCDA  191 (488)
Q Consensus       164 geKpy~C~-CgKsFs~k-s~L~~H~r~H~~  191 (488)
                      ++++|.|+ |++.|.++ ..|..|+++|.+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            44555555 55555555 555555555543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.6e-06  Score=56.52  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=12.7

Q ss_pred             ccCCccccccccCccccchhhhhhhhcc
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |++++||+|.+|++.|..+..|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            3444444444444444444444444444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.6e-06  Score=56.55  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             hccccCCccccccccCccccchhhhhhh-hccc
Q 011334          132 FSRKHGEKKWKCEKCSKKYAVQSDWKAH-SKTC  163 (488)
Q Consensus       132 ~r~HtgeKpy~C~~Cgk~F~~ks~L~~H-~rt~  163 (488)
                      +++|++++||+|+.|++.|..+..|.+| +++|
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            4679999999999999999999999999 7774

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=4.6e-06  Score=55.11  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=17.1

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ++++|.|+ |++.|..+..|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            45566666 666666666666666665543

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=2.7e-06  Score=56.50  Aligned_cols=28  Identities=18%  Similarity=0.388  Sum_probs=14.7

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      +++||.|+ |++.|.+...|..|+++|++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            44555555 55555555555555555543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=2.9e-06  Score=56.12  Aligned_cols=32  Identities=25%  Similarity=0.553  Sum_probs=25.8

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCC
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      +|++++||+|.+|++.|..+..|.+|+++ +++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            57788888888888888888888888887 444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.95  E-value=2.2e-06  Score=57.63  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=8.6

Q ss_pred             CCCccCChHHHHHHHHHhcCC
Q 011334          172 CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       172 CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |++.|.+++.|.+|+++|.++
T Consensus        14 C~k~f~~~~~L~~H~~~H~~~   34 (38)
T 1bhi_A           14 CGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             TCCEESSHHHHHHHHHHHHTT
T ss_pred             CCcccCCHHHHHHHHHHhCCC
Confidence            444444444444444444333

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=6.1e-06  Score=54.52  Aligned_cols=28  Identities=29%  Similarity=0.638  Sum_probs=16.2

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ++++|.|+ |++.|.++..|..|+++|.+
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            44555555 66666666666666655544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=4.7e-06  Score=55.61  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             ccccCCccccccccCccccch-hhhhhhhcc-cCC
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQ-SDWKAHSKT-CGT  165 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~k-s~L~~H~rt-~ge  165 (488)
                      ++|++++||+|++|++.|..+ ..|.+|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            578999999999999999999 999999998 454

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=6e-06  Score=54.72  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             ccccCCccccccccCccccchhhhhhhhccc-CC
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKTC-GT  165 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~-ge  165 (488)
                      +.|++++||+|.+|++.|.....|.+|+++| ++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4688999999999999999999999999984 44

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.92  E-value=3.5e-06  Score=55.33  Aligned_cols=24  Identities=8%  Similarity=0.029  Sum_probs=13.1

Q ss_pred             CCccCChhhhhhhhccccCCcccc
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKWK  142 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy~  142 (488)
                      ++.|.....|..|+++|++++||.
T Consensus         9 ~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            9 PKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CchhCCHHHHHHHHHHhCCCCCCC
Confidence            555555555555555555555543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.92  E-value=5.9e-06  Score=51.75  Aligned_cols=28  Identities=36%  Similarity=0.643  Sum_probs=22.2

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ++||.|+ |++.|.....|..|+++|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4678888 888888888888888887654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=6.9e-06  Score=54.43  Aligned_cols=29  Identities=21%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ++++|.|+ |++.|.+...|..|+++|.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            45667776 777777777777777766554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=4.6e-06  Score=55.12  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=25.2

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCC
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      .|++++||+|++|++.|..+..|.+|+++ +++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            46778888888888888888888888877 444

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.88  E-value=3.9e-06  Score=60.20  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=16.5

Q ss_pred             CCcceecC-CCCccCChHHHHHHHH-HhcCC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRA-FCDAL  192 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r-~H~~~  192 (488)
                      ++|+|.|+ |+|.|.++..|..|++ +|.++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            45556665 6666666666666665 55444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.88  E-value=8.5e-06  Score=54.65  Aligned_cols=34  Identities=15%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             ccCCcccccc--ccCccccchhhhhhhhcc-cCCcce
Q 011334          135 KHGEKKWKCE--KCSKKYAVQSDWKAHSKT-CGTREY  168 (488)
Q Consensus       135 HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt-~geKpy  168 (488)
                      |++++||+|.  .|++.|..+..|.+|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            6789999999  599999999999999999 688887

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=1e-05  Score=53.62  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHHhcC
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      .|.++++|.|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            5677899999999999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.86  E-value=8.1e-06  Score=50.46  Aligned_cols=25  Identities=12%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHh
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      ++||.|+ |++.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            4677887 888888888888887776

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.85  E-value=4.2e-06  Score=57.37  Aligned_cols=24  Identities=25%  Similarity=0.592  Sum_probs=23.0

Q ss_pred             cCCcceecC-CCCccCChHHHHHHH
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHR  186 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~  186 (488)
                      .+||||.|+ |+|.|.+++.|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            479999999 999999999999999

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.85  E-value=3.5e-06  Score=60.02  Aligned_cols=33  Identities=18%  Similarity=0.562  Sum_probs=18.4

Q ss_pred             hhhccccCCcccccc--ccCccccchhhhhhhhcc
Q 011334          130 KHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~--~Cgk~F~~ks~L~~H~rt  162 (488)
                      .|...|++++||+|+  .|++.|..++.|++|+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            334445566666663  466666655555555555

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.84  E-value=1e-05  Score=50.33  Aligned_cols=27  Identities=22%  Similarity=0.549  Sum_probs=21.1

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +||.|+ |++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            467888 888888888888888887654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.83  E-value=8.4e-06  Score=63.53  Aligned_cols=38  Identities=16%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhhc
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLAS  201 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~  201 (488)
                      .++|||+|. |+|.|.++..|++|+++|++.. ..+.++.
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            456788888 8888888888888888887653 3444444

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.83  E-value=7.8e-06  Score=50.81  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=18.8

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhc
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      +++|.|+ |++.|.+...|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            4677777 7777777777777777664

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.83  E-value=8.2e-06  Score=50.96  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |||.|+ |++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            567887 888888888888888877654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=7.1e-06  Score=54.36  Aligned_cols=29  Identities=24%  Similarity=0.525  Sum_probs=22.0

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      .|.+++||+|++|++.|.....|.+|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            35667778888888888887888777777

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=3.3e-06  Score=54.95  Aligned_cols=23  Identities=9%  Similarity=0.037  Sum_probs=11.5

Q ss_pred             CCccCChhhhhhhhccccCCccc
Q 011334          119 SRALGDLTGIKKHFSRKHGEKKW  141 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeKpy  141 (488)
                      ++.|.....|.+|+++|++++||
T Consensus         9 ~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            9 PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CcccCCHHHHHHHHHHHccCCCC
Confidence            45555555555555555554443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.80  E-value=1.2e-05  Score=50.34  Aligned_cols=28  Identities=18%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      ++|.|+ |++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            467787 8888888888888888777654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.80  E-value=6.8e-06  Score=51.09  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=17.2

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHh
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      ++||.|+ |++.|.+++.|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3567777 777777777777776665

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.79  E-value=7.8e-06  Score=58.19  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             hhhhcc-cCCcceec--C-CCCccCChHHHHHHHHHhcCCC
Q 011334          157 KAHSKT-CGTREYKC--D-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       157 ~~H~rt-~geKpy~C--~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      ..|... .+++||.|  + |++.|.+++.|..|+++|.+++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            334444 78999999  5 9999999999999999998753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=1.3e-05  Score=49.78  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=22.4

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +||.|+ |++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            578888 888888888888888888764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.79  E-value=1.4e-05  Score=49.35  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=25.1

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999984

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=1.4e-05  Score=55.34  Aligned_cols=31  Identities=19%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             ccCCCCceecCc--cccccCChHHHHHHHHhcC
Q 011334           57 TLMATNRFICEI--CNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        57 ~~~~~kpy~C~~--CgK~F~~~~~L~~H~r~H~   87 (488)
                      .+.+++||+|++  |+|.|.+...|.+|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            356789999986  9999999999999999997

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.77  E-value=1.2e-05  Score=49.87  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |||.|+ |++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            577888 888888888888888887664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.74  E-value=1.3e-05  Score=49.82  Aligned_cols=27  Identities=30%  Similarity=0.694  Sum_probs=25.0

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++||.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.74  E-value=5e-06  Score=54.07  Aligned_cols=30  Identities=20%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             ccccccccCccccchhhhhhhhcc-cCCcce
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGTREY  168 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy  168 (488)
                      |||+|++|++.|...+.|.+|+++ ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            589999999999999999999999 688886

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.71  E-value=2.2e-05  Score=52.59  Aligned_cols=30  Identities=13%  Similarity=0.457  Sum_probs=17.0

Q ss_pred             cCCcceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          163 CGTREYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       163 ~geKpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      .++++|.|+   |++.|.+++.|..|+++|.++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            345555563   666666666666666655543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.90  E-value=4.8e-06  Score=52.40  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=17.9

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +||.|+ |++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            566676 777777777777776666543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.71  E-value=1.9e-05  Score=61.47  Aligned_cols=42  Identities=14%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             ccccCCccccccccCccccchhhhhhhhcccCCcceecC-CCC
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCD-CGT  174 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgK  174 (488)
                      ..|.++|||+|.+|+|.|..+..|++|+++|......|. |+.
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~   48 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDL   48 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccC
Confidence            357889999999999999999999999999544455666 654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.68  E-value=2.1e-05  Score=56.33  Aligned_cols=31  Identities=23%  Similarity=0.506  Sum_probs=28.5

Q ss_pred             ccCCCCceecCccccccCChHHHHHHHH-hcC
Q 011334           57 TLMATNRFICEICNKGFQRDQNLQLHRR-GHN   87 (488)
Q Consensus        57 ~~~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~   87 (488)
                      +|.++++|.|.+|++.|.....|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4678899999999999999999999999 897

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.86  E-value=5.7e-06  Score=51.91  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=17.9

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +||.|+ |++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            456676 777777777777777666543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.64  E-value=2.8e-05  Score=48.20  Aligned_cols=27  Identities=26%  Similarity=0.663  Sum_probs=25.2

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999985

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.64  E-value=1.6e-05  Score=53.25  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=23.2

Q ss_pred             cccCCccccccc--cCccccchhhhhhhhcc-cCC
Q 011334          134 RKHGEKKWKCEK--CSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       134 ~HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      .|++++||+|.+  |++.|..++.|.+|+++ +++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            366777888874  88888888888888777 344

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=4e-05  Score=47.73  Aligned_cols=27  Identities=19%  Similarity=0.545  Sum_probs=25.5

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            478999999999999999999999997

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.60  E-value=2.5e-05  Score=47.91  Aligned_cols=25  Identities=28%  Similarity=0.648  Sum_probs=15.6

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcC
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ||.|+ |++.|.++..|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46666 66666666666666666643

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.76  E-value=8.9e-06  Score=49.81  Aligned_cols=24  Identities=25%  Similarity=0.696  Sum_probs=15.0

Q ss_pred             cceecC-CCCccCChHHHHHHHHHh
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      |||.|+ |++.|.+...|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            456666 666666666666666655

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.56  E-value=4.2e-05  Score=47.57  Aligned_cols=26  Identities=38%  Similarity=0.690  Sum_probs=24.7

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            57999999999999999999999996

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.52  E-value=5.5e-05  Score=46.92  Aligned_cols=26  Identities=38%  Similarity=0.999  Sum_probs=24.6

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.65  E-value=1.4e-05  Score=48.93  Aligned_cols=26  Identities=35%  Similarity=0.759  Sum_probs=24.1

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +||.|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999884

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.50  E-value=3e-05  Score=48.67  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=14.8

Q ss_pred             cceecC-CCCccCChHHHHHH-HHHhcC
Q 011334          166 REYKCD-CGTLFSRKDSFITH-RAFCDA  191 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H-~r~H~~  191 (488)
                      +||.|+ |++.|.+...|..| +++|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            355665 66666666666666 455544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.47  E-value=6.6e-05  Score=46.71  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=24.6

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999997

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=6.4e-05  Score=46.50  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=24.6

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            57999999999999999999999996

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.39  E-value=0.00011  Score=46.90  Aligned_cols=27  Identities=30%  Similarity=0.790  Sum_probs=25.3

Q ss_pred             CCceecC--ccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICE--ICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~--~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +++|.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4789999  89999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.50  E-value=2.4e-05  Score=48.99  Aligned_cols=24  Identities=21%  Similarity=0.585  Sum_probs=14.4

Q ss_pred             ccccccccCccccchhhhhhhhcc
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      +||+|..|++.|.....|.+|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            456666666666666666666555

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.34  E-value=9.2e-05  Score=45.22  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=23.2

Q ss_pred             ceecCccccccCChHHHHHHHHhcC
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +|.|++|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999996

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.34  E-value=0.00012  Score=46.48  Aligned_cols=26  Identities=42%  Similarity=0.910  Sum_probs=24.5

Q ss_pred             CceecC--ccccccCChHHHHHHHHhcC
Q 011334           62 NRFICE--ICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~--~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +||.|+  +|++.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            579998  99999999999999999997

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.25  E-value=0.00014  Score=46.47  Aligned_cols=24  Identities=25%  Similarity=0.695  Sum_probs=13.1

Q ss_pred             cccccc--ccCccccchhhhhhhhcc
Q 011334          139 KKWKCE--KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       139 Kpy~C~--~Cgk~F~~ks~L~~H~rt  162 (488)
                      +||+|.  .|++.|.....|.+|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            455555  455555555555555555

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.22  E-value=0.00014  Score=46.12  Aligned_cols=20  Identities=15%  Similarity=0.335  Sum_probs=9.9

Q ss_pred             CCccCChhhhhhhhccccCC
Q 011334          119 SRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~Htge  138 (488)
                      ++.|.....|..|+++|+++
T Consensus        11 ~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A           11 GKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCSSHHHHHHHHTTTSCC
T ss_pred             CcccCCHhHHHHHHHHhcCC
Confidence            45555555555555544443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.17  E-value=0.00012  Score=45.13  Aligned_cols=23  Identities=39%  Similarity=0.716  Sum_probs=12.0

Q ss_pred             cccccccCccccchhhhhhhhcc
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ||+|+.|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            45555555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.24  E-value=6.1e-05  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=12.4

Q ss_pred             cccccccCccccchhhhhhhhcc
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ||+|++|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            45555555555555555555554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.10  E-value=0.00024  Score=43.82  Aligned_cols=26  Identities=23%  Similarity=0.685  Sum_probs=24.4

Q ss_pred             CceecC--ccccccCChHHHHHHHHhcC
Q 011334           62 NRFICE--ICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~--~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ++|.|.  +|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999995

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.02  E-value=0.00029  Score=43.91  Aligned_cols=20  Identities=15%  Similarity=0.516  Sum_probs=10.8

Q ss_pred             cccccccCccccchhhhhhh
Q 011334          140 KWKCEKCSKKYAVQSDWKAH  159 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H  159 (488)
                      ||+|..|++.|.....|.+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            45555555555555555555

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.0008  Score=51.76  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             ceecC---CCCccCChHHHHHHHHHhc
Q 011334          167 EYKCD---CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       167 py~C~---CgKsFs~ks~L~~H~r~H~  190 (488)
                      +|.|.   |++.+.....|..|+++.|
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccccC
Confidence            67885   8888877788888877654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.003  Score=48.48  Aligned_cols=50  Identities=14%  Similarity=0.292  Sum_probs=43.1

Q ss_pred             ccCCCCCCccCChhhhhhhh-ccccCCc------ccccc--ccCccccchhhhhhhhcc
Q 011334          113 CVHHEPSRALGDLTGIKKHF-SRKHGEK------KWKCE--KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       113 C~~~~c~k~F~~~s~L~~H~-r~HtgeK------py~C~--~Cgk~F~~ks~L~~H~rt  162 (488)
                      |.|..|++.|.+...|..|+ +.|.+.+      +|.|.  .|++.+.....|..|+++
T Consensus         4 C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             EeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            45566699999999999998 4787765      79996  799999999999999987

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.48  E-value=0.00087  Score=58.66  Aligned_cols=83  Identities=13%  Similarity=0.233  Sum_probs=48.2

Q ss_pred             CceecCccccccCChHHHHHHH--HhcCCCcccccccccccccCceeecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334           62 NRFICEICNKGFQRDQNLQLHR--RGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~--r~H~~p~~~~~~~~~~~~~~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      +++.|.+|...|.....+..|.  +.|.             ...+.|.+. ++......++.+...    .+...+.+.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~-------------~~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~   92 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHA-------------NKVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDR   92 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHH-------------HHHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHH-------------HHHHHHhcc-cCcccCCCCCccCCC----ccccccCCCC
Confidence            5799999999999999999999  6674             112233331 100000012222211    1233445556


Q ss_pred             cccccccCccccchhhhhhhhcc
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      .|.|..|++.|.....|..|...
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTS
T ss_pred             CeEcCCCCCEeCCHHHHHHHHCC
Confidence            67777777777777777777654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.30  E-value=0.0014  Score=40.21  Aligned_cols=23  Identities=17%  Similarity=0.580  Sum_probs=14.2

Q ss_pred             ccccc--ccCccccchhhhhhhhcc
Q 011334          140 KWKCE--KCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       140 py~C~--~Cgk~F~~ks~L~~H~rt  162 (488)
                      ||+|.  .|++.|...+.|.+|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            55666  666666666666666655

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.83  E-value=0.0034  Score=57.06  Aligned_cols=67  Identities=19%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             hhhhhhhhccccCCccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCCCc
Q 011334          125 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDALAE  194 (488)
Q Consensus       125 ~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~  194 (488)
                      ...+..|.. .-..++..|+.|+..+ .+..|..|... +..++-.|. |+..|.. ..|..|..++.+..+
T Consensus        96 ~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A           96 LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            344555542 2233455666666655 44556666643 555666666 6665533 455666666555443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.47  E-value=0.004  Score=54.32  Aligned_cols=30  Identities=17%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             ccccCCccccccccCccccchhhhhhhhcc
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      ..|+|++||.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            345666666666666666666666666554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.40  E-value=0.0095  Score=51.98  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             CceeecCCCcccCCCCCCccCChhhhhhhh--ccccCC-cccccccc------Cccccchhhhhhhhcc-cCCcceecC-
Q 011334          103 KKVYICPEKTCVHHEPSRALGDLTGIKKHF--SRKHGE-KKWKCEKC------SKKYAVQSDWKAHSKT-CGTREYKCD-  171 (488)
Q Consensus       103 ~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~--r~Htge-Kpy~C~~C------gk~F~~ks~L~~H~rt-~geKpy~C~-  171 (488)
                      .+++.|.+|       ...|.....+..|.  +.|... +.|.+..+      ++.+...    .+... .+.+.|.|+ 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            467899998       89999999999998  566532 45555211      2233221    12222 456789999 


Q ss_pred             CCCccCChHHHHHHHH
Q 011334          172 CGTLFSRKDSFITHRA  187 (488)
Q Consensus       172 CgKsFs~ks~L~~H~r  187 (488)
                      |.+.|.....|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.06  E-value=0.036  Score=39.87  Aligned_cols=25  Identities=20%  Similarity=0.565  Sum_probs=17.0

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhc
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      -+|.|+ |++.|.....|+.||+.+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            456677 7777777777777777553

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.02  E-value=0.025  Score=49.29  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CccccCCCCceecCccccccCChHHHHHHHHhc
Q 011334           54 SPKTLMATNRFICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        54 ~~k~~~~~kpy~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      ....++++++|.|..|+|.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            345677889999999999999999999998764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.71  E-value=0.051  Score=39.11  Aligned_cols=27  Identities=19%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             ccccccccCccccchhhhhhhhcc-cCC
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      -+|.|+.|++.|.....|++||+. +++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            457788888888888888888775 443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=89.87  E-value=0.2  Score=45.09  Aligned_cols=73  Identities=19%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             Cccccc--cccCccccchhhhhhhhcccCCcceecC-CCCccCChHHHHHHHHHhcCCCccchhhhchhccccCCCccc
Q 011334          138 EKKWKC--EKCSKKYAVQSDWKAHSKTCGTREYKCD-CGTLFSRKDSFITHRAFCDALAEESTRLASSVVAAASNLNFR  213 (488)
Q Consensus       138 eKpy~C--~~Cgk~F~~ks~L~~H~rt~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~~~~~C~~C~~sf~~~s~L~~~  213 (488)
                      +....|  ..|...+. ...+..|.+.+.-++..|. |+..+ .+..|..|....-..+...|+.|+..+.. ..|..|
T Consensus        80 ~l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H  155 (170)
T 3hcs_A           80 SLMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIH  155 (170)
T ss_dssp             TSEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHH
T ss_pred             hcccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhH
Confidence            345678  56887664 5678899877888899999 99998 66789999987777888899999877643 334433

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=84.01  E-value=0.55  Score=36.39  Aligned_cols=58  Identities=28%  Similarity=0.633  Sum_probs=36.3

Q ss_pred             hhhhhccccCCccccc-cccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHH
Q 011334          128 IKKHFSRKHGEKKWKC-EKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       128 L~~H~r~HtgeKpy~C-~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      |..|+ .+-...+..| ..|+..+. +..|..|+.. +..++..|. |+..|.+ ..|..|...
T Consensus         5 l~~H~-~~C~~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~~~   65 (76)
T 2yuc_A            5 SSGHL-NTCSFNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEGM   65 (76)
T ss_dssp             CSCCC-CCCCCSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTTTS
T ss_pred             HHHHH-HHCCCcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHHhH
Confidence            34444 2333455677 46877664 4567788774 777778888 8887754 456666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	9e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 138 EKKWKCEKCSKKYAVQSDWKAHSKTCGT-REYKCD-CGTLFSRKDSFITHR 186
           +K + C+ C K +  +S    H       R Y C  CG  F  K   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 9e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 138 EKKWKCEKCSKKYAVQSDWKAHSKTCGTRE--YKCD 171
            K + C+ C K ++       H K   T E  +KC 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 134 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKTCGTRE 167
           R H GEK ++C  C  ++      K H     T  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.43
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.35
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.88
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.86
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.8
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.78
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.69
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.68
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.65
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.64
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.62
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.62
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.58
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.55
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.49
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.49
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.46
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.46
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.45
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.43
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.38
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.37
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.3
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.26
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.25
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.23
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.22
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.07
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.07
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.98
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.95
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.95
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.95
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.94
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.75
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.61
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.43
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.96
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.86
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.78
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.73
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.68
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.64
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.59
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.55
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.44
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.39
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.34
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.24
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.02
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.99
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.91
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.89
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.82
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.65
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.63
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.42
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.23
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.18
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.17
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.09
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.03
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.99
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.93
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.79
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.76
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.68
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.58
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.46
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.14
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.77
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.03
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.88
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.72
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.15
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.93
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.92
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.64
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.5
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.06
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.2
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	89.18
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	88.99
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	88.98
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.26
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.71
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	85.37
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.02
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	82.84
d1y0jb1	36	U-shaped transcription factor, different fingers {	82.71
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.94
d1y0jb1	36	U-shaped transcription factor, different fingers {	81.61

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-14  Score=105.79  Aligned_cols=51  Identities=29%  Similarity=0.688  Sum_probs=33.5

Q ss_pred             CccccccccCccccchhhhhhhhcc-cCCcceecC-CCCccCChHHHHHHHHHh
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      ||||+|+ ||+.|..+..|..|+++ +++|||.|. ||+.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4666663 66666666666666666 566666666 666666666666666655

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-13  Score=101.73  Aligned_cols=53  Identities=23%  Similarity=0.509  Sum_probs=50.5

Q ss_pred             CceeecCCCcccCCCCCCccCChhhhhhhhccccCCccccccccCccccchhhhhhhhccc
Q 011334          103 KKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       103 ~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      ||+|.| +|       ++.|.....|..|+++|++++||+|.+|++.|...+.|.+|+++|
T Consensus         1 EK~y~C-~C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CC-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 58       999999999999999999999999999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-10  Score=77.73  Aligned_cols=36  Identities=25%  Similarity=0.640  Sum_probs=26.3

Q ss_pred             hhhccccCCccccccccCccccchhhhhhhhcc-cCC
Q 011334          130 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       130 ~H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      +|+++|+++|||+|++|+|.|...++|.+|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            577777777777777777777777777777777 443

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=3.8e-10  Score=76.65  Aligned_cols=33  Identities=18%  Similarity=0.451  Sum_probs=25.0

Q ss_pred             hhccccCCccccccccCccccchhhhhhhhccc
Q 011334          131 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       131 H~r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      |.|+|+|||||+|++|++.|.++++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            667777777777777777777777777777764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.9e-10  Score=75.52  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             CcceecC-CCCccCChHHHHHHHH-HhcCCCccchhh
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRA-FCDALAEESTRL  199 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r-~H~~~~~~~C~~  199 (488)
                      +|||+|+ |||.|.++++|.+|++ +|.+++||+|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            5677777 7777777777777754 577777777753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.8e-10  Score=74.93  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=18.9

Q ss_pred             ccccCCccccccccCccccchhhhhhhhccc
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      |+|+|||||+|.+|++.|..++.|++|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            3566666666666666666666666666653

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.8e-10  Score=75.04  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=32.9

Q ss_pred             hhhcc-cCCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          158 AHSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       158 ~H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +|+++ +++|||.|+ |||.|.+.+.|..|+++|+++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            68888 799999999 999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-09  Score=74.22  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=25.5

Q ss_pred             CceeecCCCcccCCCCCCccCChhhhhhhhc-cccCCccccccc
Q 011334          103 KKVYICPEKTCVHHEPSRALGDLTGIKKHFS-RKHGEKKWKCEK  145 (488)
Q Consensus       103 ~kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r-~HtgeKpy~C~~  145 (488)
                      +|||+|.+|       ++.|.....|++|++ +|++||||+|++
T Consensus         3 ~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            567777776       777777777777764 577777777753

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.4e-09  Score=70.64  Aligned_cols=28  Identities=32%  Similarity=0.774  Sum_probs=13.8

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |+|||+|. |||+|.+++.|..|+++|.+
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            44444554 55555555555555555443

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.3e-09  Score=72.22  Aligned_cols=30  Identities=23%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             ccccCCccccccccCccccchhhhhhhhcc
Q 011334          133 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       133 r~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |+|+|||||+|++|++.|.++++|++|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            356666666666666666666666666544

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=4e-09  Score=70.50  Aligned_cols=27  Identities=26%  Similarity=0.561  Sum_probs=13.8

Q ss_pred             CCcceecC-CCCccCChHHHHHHHHHhc
Q 011334          164 GTREYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       164 geKpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |||||+|+ |+|.|.+++.|++|+++|.
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCccccCCCCCCcccChHHHHHHccccC
Confidence            44555555 5555555555555555543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.2e-09  Score=66.03  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=23.5

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ||||+|. |+|.|.+++.|.+|+|+|++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6889998 99999999999999998864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.3e-09  Score=70.51  Aligned_cols=33  Identities=27%  Similarity=0.579  Sum_probs=30.5

Q ss_pred             hhcc-cCCcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          159 HSKT-CGTREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       159 H~rt-~geKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |.|+ +|||||+|+ |+|+|.+++.|.+|+++|-.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            6788 899999999 99999999999999999854

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9e-09  Score=67.82  Aligned_cols=32  Identities=28%  Similarity=0.567  Sum_probs=29.8

Q ss_pred             cccCCccccccccCccccchhhhhhhhcc-cCC
Q 011334          134 RKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       134 ~HtgeKpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      +|+|||||+|.+|+|.|..++.|.+|+|+ +||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            59999999999999999999999999999 554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1e-08  Score=69.02  Aligned_cols=30  Identities=23%  Similarity=0.472  Sum_probs=28.5

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +|||||+|. |||+|.+++.|..|+++|+.+
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            799999999 999999999999999999864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.3e-08  Score=67.96  Aligned_cols=31  Identities=16%  Similarity=0.472  Sum_probs=29.0

Q ss_pred             ccCCccccccccCccccchhhhhhhhcccCC
Q 011334          135 KHGEKKWKCEKCSKKYAVQSDWKAHSKTCGT  165 (488)
Q Consensus       135 HtgeKpy~C~~Cgk~F~~ks~L~~H~rt~ge  165 (488)
                      |+|||||+|++|+|.|.++++|++|+++|.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            7899999999999999999999999999644

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.55  E-value=1.6e-08  Score=64.68  Aligned_cols=28  Identities=21%  Similarity=0.525  Sum_probs=21.2

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      |||.|+ |+|.|.+++.|.+|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            577777 7777777777777777777764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.8e-08  Score=66.10  Aligned_cols=30  Identities=20%  Similarity=0.454  Sum_probs=27.2

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +|||||+|+ |+|.|.+++.|++|++.+|.+
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            799999999 999999999999998776653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.6e-08  Score=63.65  Aligned_cols=28  Identities=21%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      |||.|. |+|.|.+++.|.+|+++|.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            577787 8888888888888888877654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.4e-08  Score=61.24  Aligned_cols=25  Identities=36%  Similarity=0.842  Sum_probs=21.9

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhc
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |||+|. |||.|.+++.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            689998 9999999999999999884

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.4e-08  Score=72.33  Aligned_cols=34  Identities=24%  Similarity=0.503  Sum_probs=17.5

Q ss_pred             hhhhhccccCCccccccc--cCccccchhhhhhhhcc
Q 011334          128 IKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       128 L~~H~r~HtgeKpy~C~~--Cgk~F~~ks~L~~H~rt  162 (488)
                      |.+|++ |++||||+|++  |+|.|.++++|++|+++
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            344443 55555555544  55555555555555555

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.4e-08  Score=67.10  Aligned_cols=35  Identities=23%  Similarity=0.632  Sum_probs=29.6

Q ss_pred             eecCCCcccCCCCCCccCChhhhhhhhccccCCccccccc
Q 011334          106 YICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEK  145 (488)
Q Consensus       106 y~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy~C~~  145 (488)
                      |.|++.+|     ++.|.....|++|+++|+|||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67776544     999999999999999999999999963

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.2e-08  Score=62.67  Aligned_cols=27  Identities=37%  Similarity=0.792  Sum_probs=26.0

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ||||+|++|+|.|.+..+|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999996

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2.9e-08  Score=70.70  Aligned_cols=41  Identities=15%  Similarity=0.227  Sum_probs=36.3

Q ss_pred             hhhhhhhhcccCCcceecC---CCCccCChHHHHHHHHHhcCCC
Q 011334          153 QSDWKAHSKTCGTREYKCD---CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       153 ks~L~~H~rt~geKpy~C~---CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      +..|.+|++..++|||.|+   |+|.|.+++.|+.|+++|.+++
T Consensus         4 ~~~l~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4567788876899999994   9999999999999999999875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.38  E-value=9e-08  Score=61.10  Aligned_cols=26  Identities=38%  Similarity=0.999  Sum_probs=25.3

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |||+|++|+|.|.+...|.+|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.9e-08  Score=60.14  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |||+|.+|||.|...+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-07  Score=60.03  Aligned_cols=26  Identities=35%  Similarity=0.745  Sum_probs=25.2

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |||.|++|+|.|.+.++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999997

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.1e-07  Score=62.36  Aligned_cols=31  Identities=19%  Similarity=0.443  Sum_probs=25.6

Q ss_pred             eecC---CCCccCChHHHHHHHHHhcCCCccchh
Q 011334          168 YKCD---CGTLFSRKDSFITHRAFCDALAEESTR  198 (488)
Q Consensus       168 y~C~---CgKsFs~ks~L~~H~r~H~~~~~~~C~  198 (488)
                      |.|+   |+|.|.++..|++|+++|.+++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            6775   888888888888888888888888885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.4e-07  Score=59.54  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=23.6

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |||.|+   |+|+|.+++.|++|+|+|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            689995   999999999999999999774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.9e-07  Score=59.06  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |||+|+   |+|.|.+++.|++|+|+|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            678885   888888888888888888764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.4e-07  Score=59.95  Aligned_cols=28  Identities=29%  Similarity=0.660  Sum_probs=22.1

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcCCC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      |||.|+   |+|.|.+.++|.+|+++|.+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            578884   8888888888888888887764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=8.9e-07  Score=57.58  Aligned_cols=27  Identities=33%  Similarity=0.767  Sum_probs=19.4

Q ss_pred             CcceecC---CCCccCChHHHHHHHHHhcC
Q 011334          165 TREYKCD---CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       165 eKpy~C~---CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ||||.|+   |+|.|.+.++|++|+++|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            5677775   77777777777777777754

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.8e-07  Score=57.49  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=21.6

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      |||.|++.+|     ++.|...+.|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            4677765444     777777777777777777765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=8.4e-07  Score=56.39  Aligned_cols=26  Identities=31%  Similarity=0.644  Sum_probs=22.1

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |||+|+   |+|.|.+.+.|.+|+|+|.+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            688895   99999999999999988864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.1e-06  Score=52.28  Aligned_cols=25  Identities=44%  Similarity=0.770  Sum_probs=19.7

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcC
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |++|+ |+|.|++++.|+.|+|.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56788 88888888888888887754

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.4e-06  Score=55.83  Aligned_cols=30  Identities=27%  Similarity=0.541  Sum_probs=19.3

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      |||+|++-+|     +|.|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            4666666333     67777777777777777664

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.1e-06  Score=55.36  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhc
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~  190 (488)
                      |||.|+   |+|.|.+.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            578885   8888888888888888773

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=1.7e-06  Score=56.25  Aligned_cols=27  Identities=22%  Similarity=0.644  Sum_probs=15.3

Q ss_pred             Cccccccc--cCccccchhhhhhhhcccC
Q 011334          138 EKKWKCEK--CSKKYAVQSDWKAHSKTCG  164 (488)
Q Consensus       138 eKpy~C~~--Cgk~F~~ks~L~~H~rt~g  164 (488)
                      ||||.|++  |+|.|.+.++|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            45555554  6666666666666655543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.1e-06  Score=56.24  Aligned_cols=30  Identities=17%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      |||+|++-+|     +|.|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            4677766443     77777777777777777765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.7e-06  Score=52.09  Aligned_cols=25  Identities=32%  Similarity=0.749  Sum_probs=20.2

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHh
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      ||||.|+ ||+.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            5788888 888888888888888777

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.9e-06  Score=52.75  Aligned_cols=26  Identities=35%  Similarity=0.756  Sum_probs=24.5

Q ss_pred             CceecCc--cccccCChHHHHHHHHhcC
Q 011334           62 NRFICEI--CNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~--CgK~F~~~~~L~~H~r~H~   87 (488)
                      |||.|++  |+|.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999995

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=4.8e-06  Score=50.98  Aligned_cols=26  Identities=35%  Similarity=0.744  Sum_probs=23.0

Q ss_pred             CccccccccCccccchhhhhhhhccc
Q 011334          138 EKKWKCEKCSKKYAVQSDWKAHSKTC  163 (488)
Q Consensus       138 eKpy~C~~Cgk~F~~ks~L~~H~rt~  163 (488)
                      ||||.|++||+.|++....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            68999999999999999999998875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=4.5e-06  Score=52.92  Aligned_cols=29  Identities=24%  Similarity=0.707  Sum_probs=19.7

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      |||+|++.+|     +|.|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            4677766544     7777777777777777764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=47.58  Aligned_cols=25  Identities=40%  Similarity=0.800  Sum_probs=23.7

Q ss_pred             ceecCccccccCChHHHHHHHHhcC
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |++|+.|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.1e-05  Score=47.40  Aligned_cols=26  Identities=19%  Similarity=0.501  Sum_probs=22.7

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |||.|.   |+|+|...+.|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            689996   99999999999999998764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.9e-05  Score=47.13  Aligned_cols=28  Identities=36%  Similarity=0.657  Sum_probs=21.6

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      ||||.|. |..+|.+++.+.-|.|.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            5778888 888888888888888887653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=5.2e-05  Score=48.10  Aligned_cols=29  Identities=17%  Similarity=0.394  Sum_probs=17.6

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcCCCcc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDALAEE  195 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~~~~~  195 (488)
                      ...|+ |||.|....+|.+|+..|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34566 666666666666666666666655

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=8.9e-05  Score=46.98  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCCccc
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEKKW  141 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeKpy  141 (488)
                      +...|+.|       ||.|.+...|.+|...|.+||||
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCC
Confidence            44567777       88888888888888888888887

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00015  Score=44.81  Aligned_cols=29  Identities=31%  Similarity=0.720  Sum_probs=21.2

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      |||.|...+|     +|.|...++|++|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5677777766     7777777778777776654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00018  Score=44.55  Aligned_cols=27  Identities=26%  Similarity=0.756  Sum_probs=25.7

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +|||.|++|+..|+++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999999999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00027  Score=42.63  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      .+.|. |||.|...+.|++|+.+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            35677 888888888888887777653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00035  Score=42.33  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=18.8

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      ||||+|. |...-...+.|..|+|.|++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4677777 77777777777777777655

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.73  E-value=0.00035  Score=40.93  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=18.2

Q ss_pred             eecC-CCCccCChHHHHHHHHHhc
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |+|. |.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            6788 8888888888888888773

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00058  Score=45.52  Aligned_cols=27  Identities=37%  Similarity=0.886  Sum_probs=22.3

Q ss_pred             cCCcceecC-CCCccCChHHHHHHHHHh
Q 011334          163 CGTREYKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       163 ~geKpy~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      +|-|||.|. |+|.|..++.+.+|.-.|
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            367889998 999999999888887665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00063  Score=40.83  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=20.3

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhc
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      |||+|. |...-...+.|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            678888 8888888888888888874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00045  Score=41.99  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.8

Q ss_pred             eecCCCcccCCCCCCccCChhhhhhhhccccCCc
Q 011334          106 YICPEKTCVHHEPSRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus       106 y~C~~C~C~~~~c~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      |.|++|       +......+-|++|+|.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            788888       888888999999999999875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.55  E-value=0.00073  Score=41.00  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             cceecC---CCCccCChHHHHHHHHHh
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H  189 (488)
                      .||+|.   |+|+|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478885   888888888888888877

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00075  Score=40.61  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          106 YICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       106 y~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      +.|.+|       ||+|...+.|++|..+|+||
T Consensus         3 hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            467776       88888888888888888775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0012  Score=40.03  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      .|.|+ ||......+-|++|.|.|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            37888 9998889999999999887753

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00088  Score=40.51  Aligned_cols=27  Identities=15%  Similarity=0.297  Sum_probs=13.7

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHG  137 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htg  137 (488)
                      +||+|..|       ...-...+.|..|.|.|+|
T Consensus         2 rpfkcqlc-------sy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQIC-------PYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeeec-------ccccCCchheEEeeecccC
Confidence            45555555       4444445555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00076  Score=44.94  Aligned_cols=27  Identities=22%  Similarity=0.677  Sum_probs=24.1

Q ss_pred             cCCccccccccCccccchhhhhhhhcc
Q 011334          136 HGEKKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       136 tgeKpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      +|.|||.|.+|+|.|.-+..+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            478999999999999999999999654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0021  Score=38.09  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=16.0

Q ss_pred             ecC-CCCccCChHHHHHHHHHhcCC
Q 011334          169 KCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       169 ~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      +|. |.|.|..+..|+.|-|.|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            466 666777666777776666654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0021  Score=42.17  Aligned_cols=27  Identities=22%  Similarity=0.672  Sum_probs=24.3

Q ss_pred             CCcceecC---CCCccCChHHHHHHHHHhc
Q 011334          164 GTREYKCD---CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       164 geKpy~C~---CgKsFs~ks~L~~H~r~H~  190 (488)
                      .+|||.|.   |+.+|.+.+.|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999995   9999999999999999885

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0013  Score=38.99  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=16.0

Q ss_pred             CCccCChhhhhhhhccccCCc
Q 011334          119 SRALGDLTGIKKHFSRKHGEK  139 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~HtgeK  139 (488)
                      .+.|..+..|+.|-|.|+|||
T Consensus         7 ~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           7 HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCCSSHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhHhhhhccccccCCC
Confidence            777777777777777777764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.91  E-value=0.0019  Score=37.69  Aligned_cols=24  Identities=29%  Similarity=0.778  Sum_probs=22.7

Q ss_pred             eecCccccccCChHHHHHHHHhcC
Q 011334           64 FICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        64 y~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |+|..|.+.|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0027  Score=38.03  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=24.7

Q ss_pred             CceecCccccccCChHHHHHHHHhcC
Q 011334           62 NRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        62 kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999999999999999999995

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0013  Score=40.87  Aligned_cols=25  Identities=24%  Similarity=0.583  Sum_probs=19.3

Q ss_pred             cceecC---CCCccCChHHHHHHH-HHhc
Q 011334          166 REYKCD---CGTLFSRKDSFITHR-AFCD  190 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~-r~H~  190 (488)
                      |||.|+   |.|.|+..+.-.+|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            578886   888888888888886 6664

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0018  Score=39.52  Aligned_cols=24  Identities=38%  Similarity=0.643  Sum_probs=14.4

Q ss_pred             ccccccccCccccchhhhhhhhcc
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |||.|..|..+-+..++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            456666666666666666666655

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.65  E-value=0.0034  Score=41.28  Aligned_cols=27  Identities=26%  Similarity=0.596  Sum_probs=25.1

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      .+.|+|.+|++.|.+.+.|--||+.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            367999999999999999999999996

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.63  E-value=0.0037  Score=41.09  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=23.8

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcCCC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDALA  193 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~~~  193 (488)
                      .|.|.|. |+|.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            3678898 9999999999999998886544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.003  Score=38.35  Aligned_cols=21  Identities=29%  Similarity=0.691  Sum_probs=10.7

Q ss_pred             ceecC-CCCccCChHHHHHHHH
Q 011334          167 EYKCD-CGTLFSRKDSFITHRA  187 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r  187 (488)
                      ||.|. |...|.++.+|.+||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            34555 5555555555555554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0065  Score=36.91  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=16.7

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |||+|+ |...-.+.++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            466666 66666666666666665554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.18  E-value=0.0049  Score=38.26  Aligned_cols=24  Identities=33%  Similarity=0.754  Sum_probs=18.3

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      ||.|. |++.|.+++-|.+|...-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            67888 8888888888888876533

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0038  Score=39.95  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=25.2

Q ss_pred             eeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          105 VYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       105 py~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      .|.|..-+|...  ++.|..+..|..|+|+||||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            467776666433  57799999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.14  E-value=0.0034  Score=38.19  Aligned_cols=30  Identities=27%  Similarity=0.602  Sum_probs=24.5

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      +||.|.+-+|     .|.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            4677777666     89999999999999888875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0062  Score=36.89  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=20.4

Q ss_pred             cccccccCccccchhhhhhhhc
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSK  161 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~r  161 (488)
                      ||.|..|...|.++.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            7999999999999999999984

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.03  E-value=0.0067  Score=36.82  Aligned_cols=27  Identities=15%  Similarity=0.390  Sum_probs=22.6

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |||.|.   |.|.|.+-..|.+|.-+|.++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            578885   999999999999998888763

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.01  Score=35.86  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          165 TREYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       165 eKpy~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |..|.|. |...|.++-.|+.||..|.++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4568888 888888888888888888764

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.93  E-value=0.0047  Score=37.35  Aligned_cols=17  Identities=12%  Similarity=0.173  Sum_probs=9.2

Q ss_pred             CCccCChhhhhhhhccc
Q 011334          119 SRALGDLTGIKKHFSRK  135 (488)
Q Consensus       119 ~k~F~~~s~L~~H~r~H  135 (488)
                      ++.|...+.|++|.++|
T Consensus        12 dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2          12 DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEESSHHHHHHHHHHH
T ss_pred             cccccCHHHHhhhhhcc
Confidence            55555555555555544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.79  E-value=0.0053  Score=38.12  Aligned_cols=25  Identities=12%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             cccccccCccccchhhhhhhhcc-cC
Q 011334          140 KWKCEKCSKKYAVQSDWKAHSKT-CG  164 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~rt-~g  164 (488)
                      ||.|.+|++.|+++.-|.+|... |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            78899999999999999999776 64

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0047  Score=37.54  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=21.4

Q ss_pred             ccccccccCccccchhhhhhhhcc-cCC
Q 011334          139 KKWKCEKCSKKYAVQSDWKAHSKT-CGT  165 (488)
Q Consensus       139 Kpy~C~~Cgk~F~~ks~L~~H~rt-~ge  165 (488)
                      +||+|..|..-..+.++|..|++. |+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            578888888888888888888876 653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.012  Score=35.87  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhcC
Q 011334          166 REYKCD-CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       166 Kpy~C~-CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |||.|. |..+-...++|+.|.++-|.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            699999 99999999999999998654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.0073  Score=36.01  Aligned_cols=20  Identities=30%  Similarity=0.689  Sum_probs=9.5

Q ss_pred             cccccccCccccchhhhhhh
Q 011334          140 KWKCEKCSKKYAVQSDWKAH  159 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H  159 (488)
                      ||+|..|||.|.++.+|..|
T Consensus         1 pf~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHH
Confidence            34444444444444444444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0076  Score=37.38  Aligned_cols=29  Identities=28%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhh-ccccC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHF-SRKHG  137 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~-r~Htg  137 (488)
                      |||.|...+|     .|+|...+.-.+|+ |+|..
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccC
Confidence            4677776555     77777777777775 66653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.02  Score=34.53  Aligned_cols=27  Identities=33%  Similarity=0.785  Sum_probs=25.0

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      +..|.|..|...|++.-.|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            456999999999999999999999997

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.015  Score=34.58  Aligned_cols=22  Identities=32%  Similarity=0.869  Sum_probs=20.0

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      ||+|. |||.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999 99999999999999754

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.02  Score=37.36  Aligned_cols=28  Identities=25%  Similarity=0.776  Sum_probs=25.1

Q ss_pred             CCCceecCc--cccccCChHHHHHHHHhcC
Q 011334           60 ATNRFICEI--CNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        60 ~~kpy~C~~--CgK~F~~~~~L~~H~r~H~   87 (488)
                      .+|||.|..  |+..|.+...|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            479999954  9999999999999999885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.033  Score=35.27  Aligned_cols=26  Identities=27%  Similarity=0.819  Sum_probs=22.0

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhcCC
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      .|.|. |||+|.++..+.+|-..|.+.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            58898 999999999999998887663

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.88  E-value=0.017  Score=33.54  Aligned_cols=21  Identities=29%  Similarity=0.808  Sum_probs=9.5

Q ss_pred             cccccccCccccchhhhhhhh
Q 011334          140 KWKCEKCSKKYAVQSDWKAHS  160 (488)
Q Consensus       140 py~C~~Cgk~F~~ks~L~~H~  160 (488)
                      ||+|..|...|..+.+|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.042  Score=31.88  Aligned_cols=22  Identities=32%  Similarity=0.696  Sum_probs=20.4

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      ||+|. |...|..+..|..|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999 99999999999999854

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.15  E-value=0.087  Score=30.61  Aligned_cols=22  Identities=36%  Similarity=0.738  Sum_probs=13.4

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      |.|+ |-|.|.+++++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            5566 666666666666665543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.058  Score=34.27  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             cceecC---CC---CccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD---CG---TLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~---Cg---KsFs~ks~L~~H~r~H~~~  192 (488)
                      |.|.|.   |.   +.|..+..|..|+|+|+++
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            357775   65   4588899999999999874

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.92  E-value=0.041  Score=32.04  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=19.0

Q ss_pred             ccccccCccccchhhhhhhhcc
Q 011334          141 WKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       141 y~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |.|+.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7888899999999988888876

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.64  E-value=0.085  Score=31.16  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=20.2

Q ss_pred             eecC---CCCccCChHHHHHHHHHhc
Q 011334          168 YKCD---CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       168 y~C~---CgKsFs~ks~L~~H~r~H~  190 (488)
                      |.|.   |+|.|.....|+.|+.+|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7784   9999999999999998874

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.045  Score=32.58  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=10.7

Q ss_pred             ccccccCccccchhhhhhhhcc
Q 011334          141 WKCEKCSKKYAVQSDWKAHSKT  162 (488)
Q Consensus       141 y~C~~Cgk~F~~ks~L~~H~rt  162 (488)
                      |+|+.|+-..+++++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4455555555555555554443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.087  Score=35.97  Aligned_cols=24  Identities=25%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      .|.|. |||.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            58899 9999999999999999883

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.13  Score=35.13  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=24.4

Q ss_pred             CCceecCccccccCChHHHHHHHHhcC
Q 011334           61 TNRFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        61 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      ...|.|..|+|.|.....|+.|...|.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            346899999999999999999999985

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.15  Score=30.28  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=21.5

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhc
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~H~  190 (488)
                      .|+|+ |+....+++.|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            48999 9999999999999998644

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.15  Score=30.36  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=13.0

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 011334          168 YKCD-CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       168 y~C~-CgKsFs~ks~L~~H~r~H  189 (488)
                      -+|. |..+.+.+..|+.|.|+|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            3555 666666666666666655

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.14  Score=30.51  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             ceecCccccccCChHHHHHHHHhcC
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHN   87 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~   87 (488)
                      |-+|.+|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4689999999999999999999994

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.26  E-value=0.33  Score=29.16  Aligned_cols=26  Identities=23%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDA  191 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~  191 (488)
                      |-|.|+   |+-+|.++.++++|....|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            357886   99999999999999755443

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.22  Score=29.65  Aligned_cols=21  Identities=19%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             ecC---CCCccCChHHHHHHHHHh
Q 011334          169 KCD---CGTLFSRKDSFITHRAFC  189 (488)
Q Consensus       169 ~C~---CgKsFs~ks~L~~H~r~H  189 (488)
                      .|.   |.|.|...+.+++|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            475   999999999999999887

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.34  Score=30.47  Aligned_cols=27  Identities=30%  Similarity=0.657  Sum_probs=23.4

Q ss_pred             ceecCccccccCChHHHHHHHHhcCCC
Q 011334           63 RFICEICNKGFQRDQNLQLHRRGHNLP   89 (488)
Q Consensus        63 py~C~~CgK~F~~~~~L~~H~r~H~~p   89 (488)
                      .|.|..|+|.|.+...+.+|-....+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            599999999999999999998776543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.02  E-value=0.15  Score=31.18  Aligned_cols=30  Identities=33%  Similarity=0.610  Sum_probs=24.4

Q ss_pred             ceeecCCCcccCCCCCCccCChhhhhhhhccccCC
Q 011334          104 KVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGE  138 (488)
Q Consensus       104 kpy~C~~C~C~~~~c~k~F~~~s~L~~H~r~Htge  138 (488)
                      |.|.|...+|     +..|.....|..|...|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            4578877666     88888889999999888876

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.84  E-value=0.43  Score=28.58  Aligned_cols=22  Identities=32%  Similarity=0.875  Sum_probs=18.3

Q ss_pred             ecC---CCCccCChHHHHHHHHHhc
Q 011334          169 KCD---CGTLFSRKDSFITHRAFCD  190 (488)
Q Consensus       169 ~C~---CgKsFs~ks~L~~H~r~H~  190 (488)
                      .|+   |||.|+.+..|..|++..|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            476   9999999999999987643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.71  E-value=0.29  Score=30.48  Aligned_cols=22  Identities=32%  Similarity=0.806  Sum_probs=16.7

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 011334          167 EYKCD-CGTLFSRKDSFITHRAF  188 (488)
Q Consensus       167 py~C~-CgKsFs~ks~L~~H~r~  188 (488)
                      .|.|. ||-+|+..+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            47787 88888888888887653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.94  E-value=0.48  Score=28.90  Aligned_cols=27  Identities=19%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhcCC
Q 011334          166 REYKCD---CGTLFSRKDSFITHRAFCDAL  192 (488)
Q Consensus       166 Kpy~C~---CgKsFs~ks~L~~H~r~H~~~  192 (488)
                      |.|.|.   |+..|...-.|..|+-.|+++
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568886   999999999999998888764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.61  E-value=0.48  Score=29.50  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=23.2

Q ss_pred             CCCceecCccccccCChHHHHHHHHhc
Q 011334           60 ATNRFICEICNKGFQRDQNLQLHRRGH   86 (488)
Q Consensus        60 ~~kpy~C~~CgK~F~~~~~L~~H~r~H   86 (488)
                      ...+|.|.-||-.|...+.|..|+...
T Consensus         5 kparf~c~pcgirfss~stleahqtyy   31 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTTTT
T ss_pred             cccceeccccceeecChhHHHhhhhee
Confidence            345799999999999999999997654