Citrus Sinensis ID: 011358
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.993 | 0.777 | 0.812 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.840 | 0.719 | 0.429 | 4e-97 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.879 | 0.727 | 0.416 | 1e-91 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.838 | 0.717 | 0.422 | 2e-91 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.836 | 0.697 | 0.419 | 2e-90 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.774 | 0.693 | 0.390 | 8e-80 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.819 | 0.693 | 0.393 | 1e-72 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.870 | 0.730 | 0.356 | 3e-72 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.815 | 0.692 | 0.371 | 7e-72 | |
| Q05085 | 590 | Nitrate transporter 1.1 O | no | no | 0.827 | 0.684 | 0.382 | 4e-70 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/485 (81%), Positives = 434/485 (89%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLS 480
PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 481 RSMAM 485
R A+
Sbjct: 481 RHYAI 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 263/424 (62%), Gaps = 14/424 (3%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
HMGK ++P + +F +S+ +Y +PL R+ T + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 468 LSVI 471
++I
Sbjct: 423 FAMI 426
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/442 (41%), Positives = 263/442 (59%), Gaps = 13/442 (2%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448
+V+ ++ TL VQQ +MN + ++P VF L + + + +Y VP RR TG
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 449 HPRGASQLQRVGIGLAVSILSV 470
P+G + LQR+GIGL +S+LS+
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSI 456
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/424 (42%), Positives = 254/424 (59%), Gaps = 15/424 (3%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
HMG K+P + +F LS+ +Y VP R+ TGH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 468 LSVI 471
S++
Sbjct: 423 FSMV 426
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/420 (41%), Positives = 253/420 (60%), Gaps = 12/420 (2%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+G +LP + F S+ + + LY VPL R+ TG +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 241/423 (56%), Gaps = 45/423 (10%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
G ++P + +F S+ + + +Y VPL RR TG +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 471 IWA 473
+A
Sbjct: 407 TFA 409
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 247/422 (58%), Gaps = 22/422 (5%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I +I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA 464
TM ++G K+P + VF +I + L++Y +P ++ G P G S LQR+ IGL
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417
Query: 465 VS 466
+S
Sbjct: 418 LS 419
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 12/437 (2%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV 459
+Q T++ + G +P + F LS+ + + LY FV + R+ TG+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 460 GIGLAVSILSVIWADTS 476
GIGL IL +I A +
Sbjct: 415 GIGLIFHILIMIVASVT 431
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 241/415 (58%), Gaps = 17/415 (4%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG+ + HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 418
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G +P
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 419 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 473
M L++ + L++Y VPL R IT + RG + LQR+G G+ S++++I A
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIA 438
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 238/418 (56%), Gaps = 14/418 (3%)
Query: 53 NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
+ G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V
Sbjct: 17 DFQGRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVT 75
Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
NFLG S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N
Sbjct: 76 NFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTS 135
Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
S CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN
Sbjct: 136 SH----CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFN 191
Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
F+ + VG+++A T++VY+Q + G WG A AI + +S +F GT YR + G
Sbjct: 192 RFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIG 249
Query: 291 SPLTRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA 348
SP+T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA
Sbjct: 250 SPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAA 309
Query: 349 LELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT 405
+ +E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T
Sbjct: 310 IRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSET 369
Query: 406 MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL 463
++ +G ++P M VF + L ++Y + LC+++ +P G LQR+G+GL
Sbjct: 370 LDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGL 427
|
Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.993 | 0.760 | 0.838 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.993 | 0.757 | 0.817 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.969 | 0.780 | 0.834 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.993 | 0.761 | 0.810 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.989 | 0.757 | 0.810 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.993 | 0.768 | 0.806 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.993 | 0.777 | 0.812 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.993 | 0.776 | 0.814 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.973 | 0.776 | 0.797 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.979 | 0.763 | 0.797 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/489 (83%), Positives = 444/489 (90%), Gaps = 4/489 (0%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLP
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTS 476
VT MPVFP LSIFLILSLYYS FVP+ RRITGHPRGASQLQRVGIGLA SILSV WA
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 477 TGLSRSMAM 485
R A+
Sbjct: 481 ERYRRKYAI 489
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/489 (81%), Positives = 439/489 (89%), Gaps = 4/489 (0%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTS 476
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 477 TGLSRSMAM 485
R+ A+
Sbjct: 481 ERYRRNYAI 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/477 (83%), Positives = 435/477 (91%), Gaps = 4/477 (0%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 473
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWA 477
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/491 (81%), Positives = 437/491 (89%), Gaps = 6/491 (1%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 414
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LK
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 415 LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAD 474
LPVTCMPVFPGLSIFLILSLYYS FVPL RRITGHP GASQLQRVGIGLA+SILSV WA
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 475 TSTGLSRSMAM 485
R+ A+
Sbjct: 481 AFERYRRNFAI 491
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/486 (81%), Positives = 438/486 (90%), Gaps = 3/486 (0%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTC
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGL 479
MPVFPGLS+FLIL+LYY TFVPL +RITGHP GASQLQR+GIGL VSILSV WA
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 480 SRSMAM 485
R+ A+
Sbjct: 479 RRNYAI 484
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/485 (80%), Positives = 431/485 (88%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTCM
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLS 480
PVFPGLS+FLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 481 RSMAM 485
R+ A+
Sbjct: 481 RNYAI 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/485 (81%), Positives = 434/485 (89%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLS 480
PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 481 RSMAM 485
R A+
Sbjct: 481 RHYAI 485
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/486 (81%), Positives = 436/486 (89%), Gaps = 1/486 (0%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGL 479
MPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 480 SRSMAM 485
R A+
Sbjct: 481 RRHYAI 486
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/489 (79%), Positives = 429/489 (87%), Gaps = 14/489 (2%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTS 476
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 477 TGLSRSMAM 485
R+ A+
Sbjct: 471 ERYRRNYAI 479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/489 (79%), Positives = 429/489 (87%), Gaps = 11/489 (2%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTS 476
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 477 TGLSRSMAM 485
R+ A+
Sbjct: 474 ERYRRNYAI 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.993 | 0.777 | 0.787 | 2.9e-206 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.856 | 0.733 | 0.424 | 1.8e-87 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.881 | 0.728 | 0.416 | 1.8e-85 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.854 | 0.731 | 0.415 | 1e-82 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.836 | 0.697 | 0.411 | 3.6e-82 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.504 | 0.451 | 0.417 | 3.6e-76 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.819 | 0.693 | 0.395 | 8.6e-72 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.821 | 0.679 | 0.380 | 3.8e-69 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.840 | 0.687 | 0.369 | 1.2e-67 | |
| TAIR|locus:2065568 | 575 | AT2G37900 [Arabidopsis thalian | 0.815 | 0.692 | 0.373 | 5.1e-67 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1995 (707.3 bits), Expect = 2.9e-206, P = 2.9e-206
Identities = 382/485 (78%), Positives = 422/485 (87%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLS 480
PVFPG FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 481 RSMAM 485
R A+
Sbjct: 481 RHYAI 485
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 184/433 (42%), Positives = 262/433 (60%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
Q TM+ HMGK ++P + +F +PL R+ T + RG +QLQR+G
Sbjct: 356 QGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMG 415
Query: 461 IGLAVSILSVIWA 473
IGL VSI ++I A
Sbjct: 416 IGLVVSIFAMITA 428
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 184/442 (41%), Positives = 260/442 (58%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITG 448
+V+ ++ TL VQQ +MN + ++P VF VP RR TG
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 449 HPRGASQLQRVGIGLAVSILSV 470
P+G + LQR+GIGL +S+LS+
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSI 456
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 180/433 (41%), Positives = 254/433 (58%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMG-KLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
Q T++ HMG K+P + +F VP R+ TGH RG +QLQR+G
Sbjct: 356 QGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIG 415
Query: 461 IGLAVSILSVIWA 473
IGL +SI S++ A
Sbjct: 416 IGLVISIFSMVSA 428
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 173/420 (41%), Positives = 247/420 (58%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+G +LP + F VPL R+ TG +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 107/256 (41%), Positives = 156/256 (60%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P + TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLKQT-TGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P + C
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE--C-- 145
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
+GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 146 ----IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRK 306
SP+T V QVLVAA+RK
Sbjct: 262 SPITSVCQVLVAAYRK 277
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 167/422 (39%), Positives = 242/422 (57%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLA 464
TM ++G K+P + VF +P ++ G P G S LQR+ IGL
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417
Query: 465 VS 466
+S
Sbjct: 418 LS 419
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 158/415 (38%), Positives = 232/415 (55%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGL 463
+G ++P M VF + LC+++ +P G LQR+G+GL
Sbjct: 373 SIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGL 427
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 157/425 (36%), Positives = 231/425 (54%)
Query: 54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
+HG+P + K GG I FIF NE+ E++A G NM++++ +H ++N + N
Sbjct: 16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72
Query: 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
F G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131
Query: 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN+
Sbjct: 132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186
Query: 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246
Query: 294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +E
Sbjct: 247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305
Query: 354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
D + P P W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN H
Sbjct: 306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365
Query: 410 M-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+ ++P M VF FV + R+ TG RG + L R+GIG +SI+
Sbjct: 366 LTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISII 425
Query: 469 SVIWA 473
+ + A
Sbjct: 426 ATLVA 430
|
|
| TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 155/415 (37%), Positives = 234/415 (56%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
+LGGF+ADAYLGRY T+ + TTIYL GL + L TM F+P C + C EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL--VLL--TMSWFIPGLKPCHQ-----EVCVEP 147
Query: 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 148 RKAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAG 206
Query: 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV V
Sbjct: 207 ILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFV 266
Query: 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL-ELKEDVI--NP 358
AA KR+ + S + L+EV K G + HT+ + LDKAA+ E K +
Sbjct: 267 AAIAKRNLPYPSDPSL-LHEV-SKTEFTSGR-LLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 418
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G +P
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 419 CMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 473
M VPL R IT + RG + LQR+G G+ S++++I A
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIA 438
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.8123 | 0.9938 | 0.7772 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 488 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 3e-48 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 7e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-15 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 4e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 3e-48
Identities = 89/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLIL 432
++ ++PI A I+ + + T+ TL V+Q TM+ + L ++P F L++ ++L
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 433 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS 469
+ PL R RG + QR G+G+ + I++
Sbjct: 268 PILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVA 300
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 7e-18
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.98 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.82 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.79 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.78 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.78 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.77 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.76 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.76 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.76 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.75 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.74 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.74 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.74 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.74 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.74 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.74 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.74 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.74 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.73 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.73 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.73 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.72 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.72 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.72 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.72 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.72 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.71 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.71 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.71 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.71 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.71 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.7 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.7 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.7 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.69 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.69 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.69 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.69 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.69 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.69 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.69 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.68 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.68 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.67 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.67 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.67 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.67 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.67 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.67 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.66 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.66 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.66 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.65 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.65 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.65 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.65 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.64 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.64 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.62 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.62 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.62 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.61 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.61 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.61 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.59 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.58 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.58 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.58 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.57 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.56 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.55 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.55 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.54 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.53 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.53 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.53 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.51 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.51 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.51 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.5 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.5 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.48 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.44 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.44 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.43 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.4 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.39 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.36 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.33 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.32 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.3 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.3 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.3 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.29 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.29 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.29 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.28 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.27 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.27 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.26 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.24 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.24 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.23 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.23 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.23 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.22 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.22 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.21 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.2 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.2 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.2 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.17 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.14 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.14 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.13 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.11 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.1 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.1 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.1 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.08 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.07 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.05 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.03 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.02 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.02 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.99 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.99 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.94 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.93 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.91 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.91 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.9 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.89 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.86 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.86 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.82 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.8 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.8 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.78 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.76 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.72 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.72 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.7 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.68 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.59 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.56 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.55 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.55 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.55 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.52 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.52 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.51 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.51 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.48 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.36 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.32 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.31 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.3 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.29 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.24 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.23 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.2 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.14 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.14 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.06 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.05 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.93 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.92 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.86 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.86 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.86 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.86 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.69 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.47 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.38 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.28 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.12 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.0 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.9 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.83 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.79 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.68 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.44 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.12 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.94 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.78 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.72 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.67 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.61 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.33 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.26 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.26 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.07 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.14 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.65 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 89.27 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.35 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 87.59 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 87.14 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 85.83 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 81.18 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=418.16 Aligned_cols=425 Identities=43% Similarity=0.703 Sum_probs=379.4
Q ss_pred CccccCCCCCcccc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHH
Q 011358 50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG 126 (488)
Q Consensus 50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G 126 (488)
+..++++.+. .+. ..+.|+....++..+.++++++||+..++..|++.++|.+...++..++.|.+...+.++++|
T Consensus 16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~ 94 (571)
T KOG1237|consen 16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA 94 (571)
T ss_pred ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555 443 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccc-ccCCCCCcchhhHHHHHHHHHHHHHhccccc
Q 011358 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ-LLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (488)
Q Consensus 127 ~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (488)
+++|.|+||++++.++.+++.+|.+++++++..+.+.|. .| ... .+..|+.++..+...++.++.++++|.|+.+
T Consensus 95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~--~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC--KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc--cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 999999999999999999999999999999888877765 44 111 3446999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011358 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (488)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (488)
++..++.+|||++..++++..+.++|+|+|+..++|..++..+..|++++.||.++|.++.+++++++++|+.+.+.|++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999987777777788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhccc---ccCCCCcc
Q 011358 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK 362 (488)
Q Consensus 286 ~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~~~~~ 362 (488)
++|.++|+.++.||++++.++++...+.++.. + +. .........+.+..+++|+|+.+...+ ....++|+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999998877666443 2 11 111112233466788999998875542 23467899
Q ss_pred cccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCC-cccCCCcccchhhHHHHHHHHhhhhhhhh
Q 011358 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVP 441 (488)
Q Consensus 363 ~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~-~~i~~~~~~~~~~~~~ii~~pl~~~~~~~ 441 (488)
.|+.++|||+|++++++|+|++.++||+++.|+.|.++.|+.+||+++++ |+||+++++.+..+.+++..|++|++++|
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 99999999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred hcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011358 442 LCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLSRSMAMT 486 (488)
Q Consensus 442 l~~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~e~~~~~~~~~ 486 (488)
+.||.++.++..++++|+++|+++.++++.+++++|.+|++.+.+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~ 448 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS 448 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999877789999999999999999999999999999999875
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=332.22 Aligned_cols=356 Identities=18% Similarity=0.266 Sum_probs=283.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC----CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 011358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (488)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~ 138 (488)
..-+++|.++.++.++++|||+|||+...+..|++.+++ ++++++....+.|....++.+++|||+|||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 344578889999999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
+..+.+++++|.++++.+.. .....++++++++++|.|.+++|..++++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 99999999999999987620 1356789999999999999999999999999999
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccC--CCCCchhH-
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR- 295 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~l~~- 295 (488)
++++ |..+|+++|++.|+|++++|++.+++.+++||..+|..+++.+.++++.++++++++.... +..+|...
T Consensus 149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 9987 9999999999999999999999999999999999999999999999999999988776553 33333221
Q ss_pred -----HHHHHHHHHHhhhccccccccccccccCCCcccccCCcccccCC-chhHHHHHHhhhcccccCCCCcccccchhH
Q 011358 296 -----VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD-DFRCLDKAALELKEDVINPSPWKLCTVTQV 369 (488)
Q Consensus 296 -----~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v 369 (488)
...++.....- + .+.+...+ ...... ..... ....+..+ ...| ++.+
T Consensus 225 ~~~~~~~~~~~~~~~~-----~---~~~~l~~~----------~~~~~~~~~~i~--~~~~~~~~---~~~~---~~~~- 277 (498)
T COG3104 225 FLLPVLGGLVVMILAA-----L---LTLLLNQN----------TFSGVLLVISIL--IAIIYFAE---AFRS---PKVF- 277 (498)
T ss_pred hhhhhHHHHHHHHHHH-----H---HHHHHHHH----------HHHHHHHHHHHH--HHHHHHHH---Hhcc---CccH-
Confidence 11111111100 0 00000000 000000 00000 00000000 0111 2334
Q ss_pred HHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHH-hccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccC
Q 011358 370 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448 (488)
Q Consensus 370 ~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~ 448 (488)
+|+||++..+++++..++||++|.|++|.+..|+. +.|++.+|+++|++++|.+|+++++++.|+++++++|+.++.
T Consensus 278 ~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-- 355 (498)
T COG3104 278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-- 355 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--
Confidence 78899999999999999999999999999988885 566676779999999999999999999999999999988775
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011358 449 HPRGASQLQRVGIGLAVSILSVIWADTSTGL 479 (488)
Q Consensus 449 ~~~~~s~~~ki~iG~~~~~is~~~~~~~e~~ 479 (488)
++|++..|+++|+++++.+++++......
T Consensus 356 --~~ps~~~KFalGl~l~g~~fl~l~~~~~~ 384 (498)
T COG3104 356 --KQPSTPIKFALGLILAGLGFLILLLAGIW 384 (498)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 25999999999999999999887766443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=337.24 Aligned_cols=339 Identities=23% Similarity=0.393 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (488)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~ 162 (488)
++|||+.+.+..|+++.+|++.+.+..+.+.+....++.+++||+++|+++||++++.++.+++.+|.+++++.+.....
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988875331111
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 011358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (488)
. .......+++++++++|.|++++|..++++||+++++. +.+.++|+|+|+++|+|+
T Consensus 81 ~--------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 H--------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred c--------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 0 02345577889999999999999999999999986442 348999999999999999
Q ss_pred HHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccc
Q 011358 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (488)
Q Consensus 243 ~i~~~i~~~i~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~ 315 (488)
++++.+.+++.+.. +|.++|.+++++++++++++..+++++++.+|.++++.+..+++..+++++......
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-- 215 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-- 215 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--
Confidence 99999999998543 699999999999999999999999999888888888888888888887765321100
Q ss_pred cccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccchhHHHHhhHHhhhhhhhHHHHHHHHHhhh
Q 011358 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (488)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~ 395 (488)
. ...+|+|.++... ..++++|+|++++++++++..++||+.|.|+
T Consensus 216 ~----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 216 H----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred c----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0135666654331 2457899999999999999999999999999
Q ss_pred hHHHHHHHHhccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 011358 396 LTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADT 475 (488)
Q Consensus 396 ~t~~~~q~~~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~ 475 (488)
.+.+..|+.+|+.+++++.+|+++++.+|++.++++.|+++..++|..+|++. .+++++|+++|+++++++++++++
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999888888877644 489999999999999999999999
Q ss_pred HHHHHHHHh
Q 011358 476 STGLSRSMA 484 (488)
Q Consensus 476 ~e~~~~~~~ 484 (488)
+|.++.+..
T Consensus 338 ve~~~~~~~ 346 (654)
T TIGR00926 338 VQLKVNPTL 346 (654)
T ss_pred HHHHHhccc
Confidence 999887643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=294.67 Aligned_cols=357 Identities=15% Similarity=0.151 Sum_probs=261.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
++++.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+.+..+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++.... .+...+++++.+.++|.|...++..++++|+||+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 998887665421 11233555666777888888899999999999987543
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCCchhH--HHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR--VAQVLVA 302 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~l~~--~~~v~~~ 302 (488)
|+++++++|...|+|++++|.+.+++.+++||+++|+++++.++++++.++..++.+.+... .++|.++ ..+....
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 89999999999999999999999999999999999999888888888887776665543211 1222211 0000000
Q ss_pred HHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccchhHHHHhhHHhhhhhh
Q 011358 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP 382 (488)
Q Consensus 303 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~ 382 (488)
..----...+.-... ....+ .....-....+....+..-.. ......+|+||+...++++
T Consensus 215 ~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~er~r~~~~~~l~ 274 (493)
T PRK15462 215 WLLVLLVATPALITV-LFWKE----------WSVYALIVATIIGLGVLAKIY---------RKAENQKQRKELGLIVTLT 274 (493)
T ss_pred HHHHHHHHHHHHHHH-HHHHH----------HHHHHHHHHHHHHHHHHHHHH---------HhcCCHHHHhhHHHHHHHH
Confidence 000000000000000 00000 000000000000000000000 0011235678999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHH-HhccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHHH
Q 011358 383 ACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGI 461 (488)
Q Consensus 383 ~~~~~~~~~~~q~~t~~~~q~-~~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~i 461 (488)
+..++||+.|.|.++.+...+ +++|++++|+++|++++|.+|+++++++.|++.+++.++.||. ++|+...|+++
T Consensus 275 ~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~ 350 (493)
T PRK15462 275 FFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFAL 350 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHH
Confidence 999999999999999776655 5899999999999999999999999999999999998876542 25899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011358 462 GLAVSILSVIWADTST 477 (488)
Q Consensus 462 G~~~~~is~~~~~~~e 477 (488)
|+++++++++++.+..
T Consensus 351 g~~~~g~~f~~l~~~~ 366 (493)
T PRK15462 351 GLGLMSAGFCILTLSA 366 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=286.12 Aligned_cols=356 Identities=13% Similarity=0.198 Sum_probs=262.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 011358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~ 143 (488)
.+++||.++.+++.+++|++++|++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||++.++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999559999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 144 ~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
+++.++.++++++.. ....++++++++++|.|...++..++++|+||+++++
T Consensus 89 ~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 999999998887521 1234667899999999999999999999999987633
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHHHHHHH
Q 011358 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLV 301 (488)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~~ 301 (488)
|+..++++|++.|+|+.+||.+++++.++.||+++|+++.+.++++++.++..++.+++. +|.+.+.. ..+.+.
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l 216 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLL 216 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHH
Confidence 688999999999999999999999999999999999998877777777777766555443 23232221 111100
Q ss_pred HHHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccchhHHHHhhHHhhhhh
Q 011358 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 381 (488)
Q Consensus 302 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l 381 (488)
...---....... + ..... .. . ...+........... -++..+.++ .++++.+..+.+
T Consensus 217 ~~~~~~~~~~~~~--~-~~~~~----------~~--~--~~~~~~~~~i~~~~f----~~~~~~~~~-~~r~r~~~~~~l 274 (489)
T PRK10207 217 VLLGSVVMIFVCA--W-LMHNV----------EV--A--NLVLIVLSIVVTIIF----FREAFKLDK-TGRNKMFVAFVL 274 (489)
T ss_pred HHHHHHHHHHHHH--H-HHhhh----------hH--H--HHHHHHHHHHHHHHH----HHHHhcCCH-HHHHHHHHHHHH
Confidence 0000000000000 0 00000 00 0 000000000000000 000011122 335667777888
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHH-hccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHH
Q 011358 382 PACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG 460 (488)
Q Consensus 382 ~~~~~~~~~~~~q~~t~~~~q~~-~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~ 460 (488)
++..+++|+.|.|..+.+..+.. +++++..|+.+++++++.+|++.++++.|+.+++++++.+|. .++++.+|++
T Consensus 275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~ 350 (489)
T PRK10207 275 MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHH
Confidence 88899999999999887766665 677777789999999999999999999999999888887663 2589999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011358 461 IGLAVSILSVIWADTST 477 (488)
Q Consensus 461 iG~~~~~is~~~~~~~e 477 (488)
+|+++.+++++++++.+
T Consensus 351 ~G~~l~~~~~~~~~~~~ 367 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAG 367 (489)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999997765544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=284.83 Aligned_cols=350 Identities=15% Similarity=0.180 Sum_probs=262.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~ 142 (488)
.++++.++.+.+.++++++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 35677899999999999999999999999999987 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCch
Q 011358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (488)
Q Consensus 143 ~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (488)
.+++.++.++++++ .+...+++++++.|+|.|...++..++++|++++++++
T Consensus 86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 99999998887764 24556778889999999999999999999999876521
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHH----H
Q 011358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA----Q 298 (488)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 298 (488)
.|+++++++|++.|+|+.+||.+++++.++.||++.|+++++.++++.+++++.++.+++.++.+++..... +
T Consensus 138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
T TIGR00924 138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214 (475)
T ss_pred ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence 288899999999999999999999999998999999999888777777777777766655443333221100 0
Q ss_pred ---H----HHHHHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccchhHHH
Q 011358 299 ---V----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (488)
Q Consensus 299 ---v----~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~ 371 (488)
. +....+.... ...+.. . +........+...+... +..+| +.+++ +
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~~~-------------------~-~~~~~~~~~~~~~~~~~-~~~~~----~~~~~-~ 267 (475)
T TIGR00924 215 LLLALLAALALVFFCAWL-MHHVVI-------------------A-NILLMTVTLAVIIFFFR-LAFKP----RLDAV-A 267 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccHH-------------------H-HHHHHHHHHHHHHHHHH-HHHhc----cCCHH-H
Confidence 0 0000000000 000000 0 00000000011110000 00001 11223 3
Q ss_pred HhhHHhhhhhhhHHHHHHHHHhhhhHHHH-HHHHhccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCC
Q 011358 372 VKTLVRLVPIPACTIMLNVILTEFLTLSV-QQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHP 450 (488)
Q Consensus 372 ~k~~~~~l~l~~~~~~~~~~~~q~~t~~~-~q~~~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~ 450 (488)
.++..+.++++++.+++|++|.|+.+++. ++.+++|++++++++|+++++++|++.+++++|++++++.++.||.
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~---- 343 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG---- 343 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----
Confidence 35566789999999999999999999765 4556789888889999999999999999999999998876676652
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHH
Q 011358 451 RGASQLQRVGIGLAVSILSVIWADTS 476 (488)
Q Consensus 451 ~~~s~~~ki~iG~~~~~is~~~~~~~ 476 (488)
++++...|+++|+++.+++++++++.
T Consensus 344 ~~~~~~~k~~~G~~l~~~~~~~~~~~ 369 (475)
T TIGR00924 344 KDPTTPLKFTLGMLFCGASFLTFAAS 369 (475)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 24788899999999999999888765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=267.57 Aligned_cols=345 Identities=15% Similarity=0.211 Sum_probs=254.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
++++.++.+++.++++++++|++..+++.|+++++|++.++++...+.+....+..++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56677999999999999999999999999999999999999998888888888888889999999955999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.++++++. .....++++++++++|.|...++..++++|++|+++.+
T Consensus 98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--- 147 (500)
T PRK09584 98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--- 147 (500)
T ss_pred HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence 999988777641 13455677888999999999999999999999876532
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchh--HH----H
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RV----A 297 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~l~--~~----~ 297 (488)
|+.+++++|++.|+|+.++|.+++++.++.||++.|++.++...++++.+++.++.+++. +|++++.. .. .
T Consensus 148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PRK09584 148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV 226 (500)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence 567889999999999999999999999999999999998877777776666655443332 23222221 10 1
Q ss_pred HHHHHHHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccchhHHHHhhHHh
Q 011358 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR 377 (488)
Q Consensus 298 ~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~ 377 (488)
.+......... ..... + .. ++.............. ...+..++ +|+|+++.
T Consensus 227 ~~~~~~~~~~~----------~~~~~--~-------~~--~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~ 277 (500)
T PRK09584 227 GVVALIAIATW----------LLHNQ--E-------IA--RMALGVVALGIVVIFG-------KEAFAMKG-AARRKMIV 277 (500)
T ss_pred HHHHHHHHHHH----------HHhcc--h-------HH--HHHHHHHHHHHHHHHH-------HHHhhcCH-HHHHHHHH
Confidence 11111111000 00000 0 00 0000000000000000 00011223 35567777
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHHHHHH-hccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcc
Q 011358 378 LVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQL 456 (488)
Q Consensus 378 ~l~l~~~~~~~~~~~~q~~t~~~~q~~-~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~ 456 (488)
.+++++..++||+.|.|+++.+..|+. ++|+++.|+.+|+++++.+|++.++++.|+.++++.++.+| +++.
T Consensus 278 ~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~ 350 (500)
T PRK09584 278 AFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMP 350 (500)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcH
Confidence 788889999999999999999998875 46777788999999999999999999999999888776655 4578
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011358 457 QRVGIGLAVSILSVIWADTST 477 (488)
Q Consensus 457 ~ki~iG~~~~~is~~~~~~~e 477 (488)
+|+++|+++.+++++++++..
T Consensus 351 ~~~~~G~~l~~l~f~~l~~~~ 371 (500)
T PRK09584 351 HKFAIGMVLCSGAFLVLPLGA 371 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-30 Score=260.93 Aligned_cols=314 Identities=32% Similarity=0.473 Sum_probs=218.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhc
Q 011358 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (488)
Q Consensus 136 ~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (488)
+|++.++.+++++|.+++++++..... +++.+...++++++++++|.|+.++|+.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-------------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 589999999999999998888653322 1124667899999999999999999999999999
Q ss_pred CCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchh
Q 011358 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (488)
Q Consensus 216 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~ 294 (488)
++++++ .+|.++|+++|++.|+|+.+++.+.+++++++||.++|+++++++++++++++..+++|++. +|.++++.
T Consensus 62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 998742 33999999999999999999999999999999999999999999999999999999999988 77888888
Q ss_pred H-HHHHHHHHHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCccc-ccchhHHHH
Q 011358 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL-CTVTQVEEV 372 (488)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~v~~~ 372 (488)
+ ..+++..+.+++....+....+ +++.....+.. . ..+.....+ +...+..+ ...|.. ++++++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~--~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYSER----S--IFGIIVFIR-AAVIFFPE---IFFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHCCC----C--CCCCCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhhhh----h--hhhhhhhcc-chhhhhhh---hhhcccCCccceeeee
Confidence 7 6666666677665544333222 11111000000 0 000011111 11111110 011222 456788999
Q ss_pred hhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCC-cccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCC
Q 011358 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR 451 (488)
Q Consensus 373 k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~-~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~ 451 (488)
|.+.+.++.+.+.++|+..+.|..+....|...+|+.+++ +++|+++++.+|++.+++++|++|++++|+.|+. .
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~----~ 283 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG----I 283 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc----c
Confidence 9999999999999999999999988888888899888888 9999999999999999999999999999999842 2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011358 452 GASQLQRVGIGLAVSILSVIWADTSTGLSRSMAMT 486 (488)
Q Consensus 452 ~~s~~~ki~iG~~~~~is~~~~~~~e~~~~~~~~~ 486 (488)
.+++++|+++|++++.+++++++.+|.+|+..+.+
T Consensus 284 ~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~ 318 (372)
T PF00854_consen 284 QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQP 318 (372)
T ss_dssp ----HHHHHHH-HHHHHHHHTTTHHHH---HH---
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 58999999999999999999999999988866543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=182.80 Aligned_cols=284 Identities=17% Similarity=0.178 Sum_probs=221.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 011358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (488)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
+++++..+.+.+.+.+..+..++++.+|+++||+ |-|+++.++.++..+++++.++++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999998 9999999999999999999998854
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 011358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (488)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~-~g 257 (488)
.....+++.|+++|++.|...+++..+.+.+.|+.+ |+++.++.+.+..+|.+++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 234467899999999999999999999999999999 99999999999999999999999999988 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccccccccccCCCcccccCCccccc
Q 011358 258 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 337 (488)
Q Consensus 258 ~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (488)
|+++|++.+++.++..++++.... .+|.++|. +.+++.. ..+.++.++..+.
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~----d~P~~h~~-----------------is~~El~-~I~~~k~~~~~~~------ 245 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYS----DSPSKHPN-----------------ISEKELK-YIEKGKSEAHVKK------ 245 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhc----CCcccCCC-----------------CCHHHHH-HHHhcccccccCC------
Confidence 999999998888877777766432 23333331 1111111 2221111100000
Q ss_pred CCchhHHHHHHhhhcccccCCCCcccccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCCccc-C
Q 011358 338 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKL-P 416 (488)
Q Consensus 338 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~~~i-~ 416 (488)
..+-|| |++++..|+|+..+..+.-.+-.+....+++.+|+ ++.++++ .
T Consensus 246 ------------------~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~-~VL~f~v~~ 295 (466)
T KOG2532|consen 246 ------------------KPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK-EVLGFDVRE 295 (466)
T ss_pred ------------------CCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhCCChhh
Confidence 012365 88999999998888877766666667777777776 5566776 6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHH--HHHHHHHHHHHHHHHHHH
Q 011358 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV--GIGLAVSILSVIWADTST 477 (488)
Q Consensus 417 ~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki--~iG~~~~~is~~~~~~~e 477 (488)
.+.+.+++.+..++.-.+...+.|++.+| ..+ .+..+|+ .++....++++++++++.
T Consensus 296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS 354 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence 78889999999999889999999999887 543 5666777 777777777777776664
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=174.21 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=129.9
Q ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 011358 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (488)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~ 168 (488)
...+..++..++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44455667788999999999999999999999999999999997 99999999998888888777765
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 011358 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (488)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i 248 (488)
.+...++++|++.|+|.|+..+...++++|.+|.+. |+..++++.....+|.++++.+
T Consensus 253 ----------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 253 ----------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999887 9999999999999999999887
Q ss_pred HHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHH
Q 011358 249 VVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 249 ~~~i~~~-------------~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+.++... .+||+.|++.++..+++++..++
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 7665432 36888888877666555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=167.65 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=148.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+|..+..+++..+...+....+...+| .+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 455667777777777666655555555 44678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcC-CCCCchhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT 225 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~~ 225 (488)
.++.++++.+ .+.+.++++|++.|+|.++..+.....+.+.+ |+++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999888875 36788999999999999988887777777777 4455
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
|+++++++....++|..+||.+++++.++.|||+.|++...+.++.+++.....+
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999877666655555444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-16 Score=160.90 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=145.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+|+..+.+.+..++.......+. .....+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIG-FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHH-HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 46656666665555555554343 345588999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.++++++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 129 (412)
T TIGR02332 84 GIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------ 129 (412)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------
Confidence 9988888775 357788999999999999988888889999999877
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~------~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|+...++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++..+
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998864 369999999876665554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-16 Score=158.70 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=143.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+++.++.+.+..+...+........+ ..+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 34445555555555555544343333 456778999999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+++... .+...+++++++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888777654 356778889999999999999999999999999877
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++.+++.+....+|..+++.+++++.+..+|++.|++.++..++..+....
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988889999999877766655555444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-16 Score=159.90 Aligned_cols=174 Identities=13% Similarity=0.212 Sum_probs=147.8
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 011358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (488)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~ 142 (488)
.++.+|+......+..+...+..+.+.. ....+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4567788777888888888777765544 44567789999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCch
Q 011358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (488)
Q Consensus 143 ~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (488)
.++..++.+++.+. .+...+++++++.|++.+...+...+++.|.+++++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 98888888777654 356778889999999999999999999999999887
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHH
Q 011358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS 272 (488)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g--~~~~f~i~~~~~~i~ 272 (488)
|+...++++.+..+|..+++.+.+.+.+..+ |++.|++.++..++.
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877665 999998765554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-16 Score=158.46 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+|..++.+.+..++.....+.... +...+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 455566666655554444433222 33456788999999999999999999999999999999998 9999999999998
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+.+..+ .+.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 85 ~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------ 130 (390)
T PRK03545 85 IASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------ 130 (390)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------
Confidence 8888877765 367888899999999998888888999999999887
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
|++.++++..+.++|..++|.+++.+.+..||++.|++.++..++..+...
T Consensus 131 r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 131 KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998889999999998776655544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=163.10 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=149.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
+.+|..+.+....++..++++.+..+++.|+++++|++..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3455688888888898899888899999999999999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++.+. .+.+.+++++.+.+.+.+...++..++.+|.+++++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 129 (395)
T PRK10054 83 FASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS----- 129 (395)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH-----
Confidence 88877766654 345566666777777777777788899999998877
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.+++++...+
T Consensus 130 -~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 130 -KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 68999999887776666544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=153.70 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll 153 (488)
++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 345555555665555556666665 5789999999999999999999999999999998 99999999988877777766
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHH
Q 011358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (488)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (488)
...... + ..+.+.+++++++.|++.+...+...++++|.+++++ |++.+++
T Consensus 82 ~~~~~~----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----G-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 655210 0 0267788899999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 234 ~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
++.+.++|..++|.+++++.+..||++.|++.++..+++.+..+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999887776655554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-16 Score=156.60 Aligned_cols=169 Identities=20% Similarity=0.266 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 011358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (488)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~ 154 (488)
++..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3455556666655666666588899999999999999999999999999999999997 999999999998888855555
Q ss_pred HhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHH
Q 011358 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (488)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (488)
++ .+.+.+++++++.|++.+...+...+++.|.+++++ |+..+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 134588999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 235 ~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+...++|..++|.+++++.+..+|++.|++.++..+++.++...
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence 99999999999999999998889999999988888777664333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=154.44 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..+......+.+...++.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 45556666666666666777777789999999999999999999999999999999999998 99999999999998888
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
+++... . +.+.+++++++.|++.+. .....++++|.+++++ |+.
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 877765 3 567788899999998654 4567789999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~----------~~g~~~~f~i 264 (488)
..+++....++|..+++.+++.+.. ..+|++.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887777888777777765543 2379999844
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-16 Score=162.53 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
+..+++..+...+... +.......+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDST-IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 4445555555555553 333445566778999999999999999999999999999999998 99999999999999888
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++..+ .+...+++++++.|++.+...+...+++.|.+|+++ |+++
T Consensus 82 ~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 127 (485)
T TIGR00711 82 LLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA 127 (485)
T ss_pred HHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence 877654 357788899999999999999999999999999887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
+++++....+|..++|.+++++.++.+|++.|++.+...+++.+..++..+
T Consensus 128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999877666655554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=155.56 Aligned_cols=177 Identities=17% Similarity=0.167 Sum_probs=146.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+.+|..+....+..+++.+..+......+ .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 35666667777777777776665555444 55678999999999999999999999999999999997 99999999988
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.+++.+. .+...+++.+++.|++.+...+...++++|.+++++
T Consensus 89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 887777666654 356778889999999999988999999999999887
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
|++.+++++...++|+.+++.+++.+.+..+|++.|++.+++.++..+...
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLM 187 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888999999987765555444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-15 Score=158.17 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
.+.++.+.+..++..+..+.+...++.+.. ++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 345777888888888888888888887765 6999999999999999999999999999999998 99999999888888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+++.++ .+...+++++++.|++.+...+...+++.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 777766553 256678889999999999988999999999998776 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
++.+++++...++|..++|.+++++.+..||++.|++......++.+......+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999899999999877766666555544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=155.40 Aligned_cols=149 Identities=12% Similarity=0.083 Sum_probs=126.9
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccc
Q 011358 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (488)
Q Consensus 95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~ 174 (488)
.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.+++..+
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------------------ 98 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA------------------ 98 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH------------------
Confidence 35578999999999999999999999999999999998 99999999988888887776654
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
.+.+.+++.+++.|++.+...+...+.+.|.+++++ |.+..++.+....+|..++|.+++++.+
T Consensus 99 ----------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 99 ----------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred ----------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999988877888899999998877 8888888888888899999999999988
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 011358 255 EHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 255 ~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
..+|++.|++.+++.+++.+....
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHH
Confidence 889999999877776666554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-15 Score=154.20 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=147.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 011358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (488)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~ 142 (488)
.+|..|+.+..+.+..++.....|.....++. +.+++|++.++.++..+.+..+..++.++.|+++||+ |||+.+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 34556776666666666655565555555554 5678999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCch
Q 011358 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (488)
Q Consensus 143 ~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (488)
.++..++.+++.+. .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-- 141 (394)
T ss_pred HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence 99998888777664 367889999999999999999999999999999887
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
|+.+.++...+.++|..++|.+++++.+..||++.|++.++..++..
T Consensus 142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999998766554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=156.51 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---CChHHHHHHHH---HHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~---~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~ 143 (488)
.+....+..+++.+.... ...+..++.++++ .+..+.+.... ...++..++.+++|+++||+ |||+++.++.
T Consensus 23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~ 100 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV 100 (432)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence 344444556666666544 4556667778774 45554333333 33445558999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 144 ~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
+++.++.++++++....... ......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~--- 157 (432)
T PRK10406 101 CMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR--- 157 (432)
T ss_pred HHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---
Confidence 99999998887752100000 0123568889999999999999999999999999988
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHH
Q 011358 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (488)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~g~~~~f~i~~~~~~i 271 (488)
|+...++.+.+.++|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ---KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999999888888888888877655443 257999999986665443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-16 Score=163.18 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=130.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i 141 (488)
+++.+..+.+..+...+....+....+ .+..+ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence 334444455555555444433333233 33332 234456678889999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (488)
Q Consensus 142 ~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (488)
+.++..++.++++++... .+ ..+...++++|++.|++.|+..+....+++|.+|++.
T Consensus 92 ~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~- 148 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW- 148 (502)
T ss_pred HHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence 999988888877764210 00 0136789999999999999999999999999999998
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccchHHHHHHHHHHHHHHHHH
Q 011358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-----------------------~~g~~~~f~i~~~~~~i~~~~ 275 (488)
|+++.++++....+|..+++.+..++.. ..+||+.|.+.++..++.++.
T Consensus 149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765432 237999997766655544333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-16 Score=162.04 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=122.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCC
Q 011358 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (488)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (488)
++++..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.+..++.........
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------------- 113 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG--------------- 113 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc---------------
Confidence 388899999999999999999999999999997 9999999999988888777665321000000
Q ss_pred CCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 011358 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------ 253 (488)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~------ 253 (488)
.++......++++|++.|++.|+..+...++++|.+|+++ |+..++++..+..+|..+++.+++.+.
T Consensus 114 -~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 186 (479)
T PRK10077 114 -PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186 (479)
T ss_pred -ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 0011245678899999999999999999999999999988 999999999999999999887766543
Q ss_pred --hccchHHHHHHHHHHHHHHHHHH
Q 011358 254 --MEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 254 --~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
+..|||+.|++.++..++..+..
T Consensus 187 ~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 187 WLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHH
Confidence 34689999998776665554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-15 Score=152.71 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
+.++...++..++++.+...++.|+++++|+|..+.+...+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5666778888888888899999999999999999999999999999999999999999998 999999999998888887
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (488)
++... .+.+.+++.+++.|++.+...+...+++.|.+|+++ |+++.
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 77654 356778888999999988888888999999999877 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 232 ~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
++.+...++|..+||.+++++. ..+|++.|++.++..+++.+....
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 679999999877665555444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-15 Score=151.76 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~l 152 (488)
+..+..+....+.......+| .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence 334444444445444444444 45677999999999999999999999999999999998 9999999999888888777
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHH
Q 011358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (488)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (488)
+... .+...+++++++.|++.+...+...+++.|.+++++ |++..+
T Consensus 85 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 130 (392)
T PRK10473 85 CSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS 130 (392)
T ss_pred HHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 6654 245667888999999999888888999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 233 ~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+.+...++|..++|.+++++.+..+|++.|++.+++.++..+..+.
T Consensus 131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888889999999887766655554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-15 Score=155.57 Aligned_cols=168 Identities=10% Similarity=0.040 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
..+..++..++..+..+.+...++.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence 33444444444444444555555555 457999999999999999999999999999999998 9999999999988888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+++... .+...+++.+++.|++.|...+...+++.+++++++ |++
T Consensus 102 ~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~ 147 (434)
T PRK11663 102 NILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGG 147 (434)
T ss_pred HHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHH
Confidence 8777665 356778888888999998888888999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
.+++++.+.++|+.+++.+.+++.+..||++.|++.++..++..
T Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999998776554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-15 Score=151.88 Aligned_cols=147 Identities=15% Similarity=0.088 Sum_probs=127.9
Q ss_pred hHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 011358 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (488)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~ 175 (488)
+.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++..+.++..++.+++..+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 5678999999999999999999999999999999997 99999999998888888877765
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011358 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (488)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~ 255 (488)
.+...++++|++.|++.+...+.....+.|.+++++ +++.+++++.+.++|..++|.+++++.+.
T Consensus 102 ---------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 102 ---------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788999999999988766666788899999877 88999999999999999999999999888
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 011358 256 HGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 256 ~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
.||++.|++.++..+++.+..+
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988777666655433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-14 Score=153.50 Aligned_cols=174 Identities=15% Similarity=0.092 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
++.+.......++..+..+++.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 34444444444444444444433 33467789999999999988889999999999999999997 99999999888888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.++++++ .+...+++++++.|++.+... ....++++.+|++. |
T Consensus 113 ~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------r 157 (476)
T PLN00028 113 PAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------V 157 (476)
T ss_pred HHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------e
Confidence 877766654 245677788999998887653 34567899999888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----h-----ccchHHHHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~----~-----~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+.++++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..++
T Consensus 158 g~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 158 GTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777788877766665442 2 248999999887766655544443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=153.20 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=134.6
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 011358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (488)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~ 170 (488)
....++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 79 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------- 79 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH--------------
Confidence 344557889999999999999999999999999999999998 99999999998888888877765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
.+.+.+++++++.|++.+...+....++.|.+|+++ |++.+++++...++|..+++.+.+
T Consensus 80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 367788999999999999999999999999999877 999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 251 ~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
++.+..+|++.|++.++..++..+..+.
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 9988899999999877766655554443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=162.88 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchh
Q 011358 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (488)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++.+ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 448999999999999999999999997 99999999999999999999987 4
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHH
Q 011358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG 263 (488)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~--~g~~~~f~ 263 (488)
+...++++|++.|+|.|+.....+.+++|..|.+. |+...+.+++..++|..++. +.++..++ .+||..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHH
Confidence 78899999999999999999999999999999988 99999999999999999994 44555444 48998888
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccccccccccCCCcccccCCccccc---CCc
Q 011358 264 ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH---TDD 340 (488)
Q Consensus 264 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~ 340 (488)
+..+..++..+. .+.. |++|+| +.+.++.+++.+...++.. .+.
T Consensus 214 ~~~i~~~~~~~~-~~~~-------------------------------pesp~~-L~~~g~~~~a~~~l~~l~g~~~~~~ 260 (513)
T KOG0254|consen 214 LALIPAVILALG-MLFL-------------------------------PESPRW-LIEKGRLEEAKRSLKRLRGLSPEDV 260 (513)
T ss_pred HHHHHHHHHHHH-HHhC-------------------------------CCChHH-HHHcCChHHHHHHHHHHhCCCCcch
Confidence 777666655555 3332 223333 2222222222211111111 111
Q ss_pred hhHHHHHHhhhccc---ccCCCCcccccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCCcccCC
Q 011358 341 FRCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV 417 (488)
Q Consensus 341 ~~~l~~a~~~~~~~---~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~~~i~~ 417 (488)
...++..+.....+ .+.+..|+.+.. ....|+.+..+.+..+++..+..+...|+..++|..+.+.+ +
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~-------~ 331 (513)
T KOG0254|consen 261 EVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD-------T 331 (513)
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc-------h
Confidence 11111111000000 000111222211 12345565566666777776666666777666665555433 1
Q ss_pred CcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011358 418 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGL 479 (488)
Q Consensus 418 ~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~e~~ 479 (488)
.....+-.+..++..-+...++|+++|| .-+..|.+.+.+++++.+..-..
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~ 382 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVF 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222222222233333334666677776 44688888888888777765444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-15 Score=150.84 Aligned_cols=175 Identities=10% Similarity=-0.047 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
++.+..+.+..+...+........++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 34577777777777777766777888899999999999999999999999999999999999998 99999999998887
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+.+.++...... ...+...+++.|++.|++.+...+...++..|.+++++ |
T Consensus 93 ~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r 146 (399)
T PRK05122 93 LSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------T 146 (399)
T ss_pred HHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------h
Confidence 776666554221000 00245678889999999999998998899999998888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~ 269 (488)
++.++++..+.++|..+++.+++++.+..||++.+++.++..
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 188 (399)
T PRK05122 147 GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLA 188 (399)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999989999999999999999988899998877655543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=151.94 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+.++.+.+..+......+.....++ .+.+++|++.++.++..+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 3466677777777777666666554 45678999999999999999999999999999999998 999999999999998
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+.++++.+ .+.+.++++|++.|++.+...+....++.+.+++++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 88877765 367888999999999999887888888899988776 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
..++++..+..+|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 899998899999999999999999888899999998877655555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-14 Score=149.12 Aligned_cols=175 Identities=7% Similarity=0.050 Sum_probs=141.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
.+|+|..+...+..++.....+.+...++ .+.+++|+|.++.++..+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 34566666666666666666554555444 45678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.+++.+. .+...+++++++.|++.+...+...+.+.+.+|+++
T Consensus 81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---- 128 (394)
T PRK03699 81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---- 128 (394)
T ss_pred HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence 888888777664 356778889999999999888888999999998877
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-~~g~~~~f~i~~~~~~i~~~~ 275 (488)
|+...+..+...++|+.++|.+.+++.. ..+|++.|++.++..++..+.
T Consensus 129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8999888888888999999999888754 579999998876665544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-14 Score=146.43 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=162.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+..|..++.+.+..|+....-+.....+ +-+.+++|.|...+++.++.|..+..++.++...+.||+ .||+.++....
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 3445668888888888877777666644 456789999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+++++.++.+++ +++..+.++|++.|+..|.+.+...+..+++.|+++
T Consensus 87 lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---- 134 (394)
T COG2814 87 LFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---- 134 (394)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----
Confidence 999999999997 578999999999999999999999999999999998
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
|+++.++.+.+..++..+|..++.++.+.+|||..|++.+++.+++++..+...|
T Consensus 135 --~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 --RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred --hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888888777766554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-15 Score=152.79 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=142.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+.+++......+..+...+..+.. ..+..++.+++|++..+.++..+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344555566666666655555443 4455567789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.++++++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---- 139 (426)
T PRK12307 92 AYSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---- 139 (426)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence 998888877765 367889999999999999999999999999999887
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~ 268 (488)
|+++.+++..+..+|..+++.+.+++.+..+|++.|++.++.
T Consensus 140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998888999999875443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-15 Score=156.19 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHH-HH----H-HHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SS----N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-a~----~-~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i 141 (488)
++.+....+..+++.+-+. +......++.+.++.+... .. . ..+...++..++++++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4455566667777776664 4555566777777543211 11 1 24566788889999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (488)
Q Consensus 142 ~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (488)
+.+++.++.++++++.....+. -.....++++|++.|+|.|+..++..++++|.+|++.
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999999888762100000 0011247889999999999999999999999999988
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 011358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (488)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~g~~~~f~i~~~~~~ 270 (488)
|+...++...+..+|..+++.+...+. .++|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 899989888888888887776554432 25799999998665433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-16 Score=160.02 Aligned_cols=144 Identities=20% Similarity=0.299 Sum_probs=121.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 011358 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (488)
Q Consensus 103 s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (488)
+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------------------------ 123 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------------------------ 123 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 388999999999999999999999999998 9999999999988888887765421
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH---HHHhhccchH
Q 011358 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWG 259 (488)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~---~~i~~~~g~~ 259 (488)
..+.+.+++++++.|+|.+...+...++++|.+++++ |+..+++++.+.++|..+++.++ +.+.+..+|+
T Consensus 124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~ 196 (481)
T TIGR00879 124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196 (481)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence 0244678899999999999999999999999999888 99999999999999999999988 6666678999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011358 260 SAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 260 ~~f~i~~~~~~i~~~~~~~ 278 (488)
+.|++.++..++.++..++
T Consensus 197 ~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 197 IPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999966555554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=149.49 Aligned_cols=171 Identities=13% Similarity=0.035 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++.+.+..+...++.......++.|+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 355565666666666655667788889999999999999999999999999999999999998 9999999988776665
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+...+....... ...+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5433322110000 01367788999999999999888888888999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~ 267 (488)
+++++..+.++|..++|.+++++.+..||++.+.+..+
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~ 186 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV 186 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 99999999999999999999999888899977665443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=160.39 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=157.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
.++.+..++++.+.++.--|.+.. ...-.++.+|.+....+++...+.+...++.|+.|+++||| .|++++.+|.++.
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence 345678888888888888887766 44456778999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+...++ ..++.+.+.|.+.|+|.+...+..+++++|.|+++.
T Consensus 109 ~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------ 154 (493)
T KOG1330|consen 109 TLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------ 154 (493)
T ss_pred HHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------
Confidence 9999888876 478999999999999999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
|++.++++|+++++|+++|.++++++.+..+ |||+|++.++..++..++.+++.
T Consensus 155 Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 155 RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988776 99999998888776666655543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=149.53 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
|+.+...++..+.... .|... .+..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGY-VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG 79 (377)
T ss_pred EEEeHHHHHHHHHhhH-Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence 3433333333333322 34433 356677889999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.++++++ .+...+++++++.|++.+...+.......+.++ ++ |
T Consensus 80 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~ 124 (377)
T TIGR00890 80 LGFTFYAIA----------------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------R 124 (377)
T ss_pred HHHHHHHHH----------------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------c
Confidence 988887765 467888899999999998877777788888886 34 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+...+++..+.++|..+++.+.+.+.+..+|++.|++.++..++..+..+.
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 125 GLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877667777777789999999877766665554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=154.92 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=127.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 011358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (488)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
+++++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999997 9999999999888777766654311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 011358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (488)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-g 257 (488)
.+...+++.|++.|++.+...+....++++.+|+++ |+++.++++.+.++|..+++.+.+++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 235668889999999999999999999999999888 999999999999999999999999998884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011358 258 WGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 258 ~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=150.31 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=126.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--CCChHHHHHHH-----HHHHHHHHHHHhHHHHHhhhccchhHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWT 138 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~laD~~~Gr~~~ 138 (488)
.+++.++...+..+++.+....+....+.++.+++ +.++.. +... +...++..++.+++|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34555666666777776666544444445555554 666653 3332 233345667888899999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
+.++.+++.++.++++++....... -.....+++.|++.|++.|+..+....++.|.+|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 9999999999988888762100000 00123578899999999999999999999999999
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~g~~~~f~i~~~~~~ 270 (488)
++ |+...+..+.+..+|..++..+..++. +.+|||+.|++.++..+
T Consensus 157 ~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 157 NK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 88 898888888888899888877766654 24799999998765543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=147.23 Aligned_cols=171 Identities=12% Similarity=-0.011 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
...+.+..++..+++......++.|++ ++|++..+ .+.+.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence 555556667777777667777888875 58887554 37788888899999999999999997 999999998888
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++... .+.+.+++.+++.|++.+ ..+...+++.|.+++++
T Consensus 94 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----- 139 (408)
T PRK09874 94 MGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK----- 139 (408)
T ss_pred HHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-----
Confidence 87777766553 356778888999998755 45677788889998877
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|+...++++.+.++|..++|.+.+++.+..+|++.|++.+++.+++.+..+.
T Consensus 140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988889999999887776665554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=147.70 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
.+|..+...+..++..+........++ ++.+++|++..+.++..+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 456666666666666655544444344 45678999999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+++... .+...+++.+++.|++.+...+....+..|.+++++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8887776654 356778889999999988777777788888888766
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~ 275 (488)
++...+++..+..+|..++|.+++++.+..||++.|++.++..++..+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999988889999999876655544433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=148.02 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=132.5
Q ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 011358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (488)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~ 167 (488)
+...++.+. +++|++..+.++..+.+.++..++.+++|+++||+ |||+++.++.++..++.+++...
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334455554 57899999999999999999999999999999997 99999999998888888877664
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~ 247 (488)
.+...+++.+++.|++.+...+...+++.|.+++++ |++.+++++....+|..++|.
T Consensus 77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999888889999999999887 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 248 i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+++++.+..+|++.|++.++..++..+....
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999998889999998877766655544433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=148.16 Aligned_cols=151 Identities=12% Similarity=0.102 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 011358 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (488)
Q Consensus 86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~ 165 (488)
+.+...+ ..+.+++|+|..+.++..+.+.++..++.++.|+++||+ |||+++..+..+..++.++++++
T Consensus 26 ~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---------
Confidence 4444434 456789999999999999999999999999999999998 99999999999999999988876
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Q 011358 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (488)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 245 (488)
.+...++++|++.|+|.+...+.....+.+.++ ++ |+...+++..+.++|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 356778899999999999988888899999887 55 8999999999999999999
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHHHHHHH
Q 011358 246 FTLVVYIQMEH-GWGSAFGALAIAMGISN 273 (488)
Q Consensus 246 ~~i~~~i~~~~-g~~~~f~i~~~~~~i~~ 273 (488)
+.+++++.++. +|++.+.+.++..++.+
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999888765 79988766554444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-14 Score=145.23 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=142.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
.+|+.+....+..+...+..+. ......++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence 3455555555555555444433 33445566678999999999999999999999999999999998 999999999888
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++.+. .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 92 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 138 (398)
T TIGR00895 92 FSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----- 138 (398)
T ss_pred HHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh-----
Confidence 88877766654 356678888999999999999999999999999877
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++.+++++.+..+|..+++.+.+++.+..+|++.|++.++...+..++...
T Consensus 139 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 139 -RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred -hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999899999998876554444444333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=150.54 Aligned_cols=289 Identities=15% Similarity=0.075 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhH
Q 011358 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (488)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (488)
+.+++++.++..+|..++|+++|++ |||..++++.++..++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 4678889999999999999999998 99999999999888888777766331 367
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHh-hccchHHHHHHH
Q 011358 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL 265 (488)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~-~~i~-~~~g~~~~f~i~ 265 (488)
.+++++|++.|+..|......+-++.|..|.+- ||..-....++..+|..++..++ ..+. +...|.+.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999998 99999999999999999986554 2333 445699888888
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccccccccc-cCCCcccccCCcccccCCchh-H
Q 011358 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFR-C 343 (488)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~ 343 (488)
++..++.++.+.+ .||+|++ ++. +++.++|.+..++....++.. .
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 7777766666544 4677777 555 555666655555554332211 1
Q ss_pred HHH---HHhhhcccc-cCCCCcccccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCCcccCCCc
Q 011358 344 LDK---AALELKEDV-INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419 (488)
Q Consensus 344 l~~---a~~~~~~~~-~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~~~i~~~~ 419 (488)
++. .......+. .+...|+.++... .++.++..+.+.+++++.+..-...|++.+.+..++..+. -..-...
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~--a~~an~~ 313 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE--AQYANLG 313 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH--HHHHHHH
Confidence 111 110000000 1111222222211 2233444555556666666655556666666544444220 0011122
Q ss_pred ccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLS 480 (488)
Q Consensus 420 ~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~e~~~ 480 (488)
++.+|.+..++. ..++|+++|| .-+.++..++.++.+.+.+.+...
T Consensus 314 ~g~v~~~~t~~~----~~lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 314 IGIVNLLSTLVS----PFLIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHHHHHHHHHHH----HHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 4455577777 345666666666665555554443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-14 Score=143.66 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 011358 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (488)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i-~~~~~~lg~~ll 153 (488)
.+..++..++.......++.|+.+++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+.+ +..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456666777777788899999999999999999999999999999999999999998 99887655 444444555555
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH--HH
Q 011358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR--FF 231 (488)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~--~~ 231 (488)
+.+ .+...+++.+++.+.+.+...+...++..|..+++. |.. ..
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 543 245667777777777777677777777788776554 443 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 232 ~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
++.....++|..++|.+++++.+..+|++.|++.+++.++..+..+.
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999988899999999987776655554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=143.73 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=122.9
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~ 166 (488)
.........+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+......+.+ .....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~--------- 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP--------- 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh---------
Confidence 3444455566789999999999999999999999999999999998 999876655444433322 22210
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
.+...++++|++.|+|.+.. .+.....+|.+|+++ |++.+++.+.+..+|..+++
T Consensus 77 ------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~ 131 (368)
T TIGR00903 77 ------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFAL 131 (368)
T ss_pred ------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 25778999999999999864 455566689999877 99999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 247 ~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.+++++.+..|||+.|++.++..++..++.+.
T Consensus 132 ~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 132 AAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999866665555444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=142.75 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~l 152 (488)
.+.+..+...+..+.....++.+. +++|.+..+.++..+...++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 345566677777776777677666 56799999999999999999999999999999998 9999999999998888887
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHH
Q 011358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (488)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (488)
+... .+...+++++++.|++.+...+...++..|.+++++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 7764 357788899999999999999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 233 ~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+.+...++|..++|.+.+++.+..+|++.|++.++..+++.+....
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999887776666555433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-14 Score=145.11 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=133.2
Q ss_pred ccccCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh
Q 011358 61 DLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY 136 (488)
Q Consensus 61 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~ 136 (488)
-|..++|. |.++...+. +...|..+.+.+.+...+.+ ++|+|.++.++..+++.++..++.++.|++.||+ |.|
T Consensus 23 ~w~~~~~~~a~r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R 100 (462)
T PRK15034 23 FWENKGKHIARRNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGR 100 (462)
T ss_pred HHhhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCh
Confidence 44444444 545544444 44455555555556666655 7999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcC
Q 011358 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (488)
Q Consensus 137 ~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (488)
+++.++.++..+.+++++++... . ..++..+++.+++.|++ ++..+.....++.+|
T Consensus 101 ~v~~~~~ll~~i~~~~~~~a~~~----~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf 156 (462)
T PRK15034 101 RWTVFSTAILIIPCVWLGIAVQN----P-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc----c-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence 99999999888888777754110 0 02577899999999998 667788889999999
Q ss_pred CCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh-----h-------------ccchHHHHHHHHHHHHHHHHHHHH
Q 011358 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~-----~-------------~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|+++ |+++.+++....|+|..+++.+...+. . ..+|+.++++..+..+++.+..++
T Consensus 157 p~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 157 PKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred CHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 999999986666677665555443321 2 234666666665655555545444
Q ss_pred h
Q 011358 279 G 279 (488)
Q Consensus 279 ~ 279 (488)
.
T Consensus 231 ~ 231 (462)
T PRK15034 231 G 231 (462)
T ss_pred h
Confidence 3
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-14 Score=146.26 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHH--hHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 011358 82 RMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (488)
Q Consensus 82 ~~~~~~~~~~l~~y--l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~ 159 (488)
.+.++....++|.+ +.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++.++.++..++.+++...
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--- 91 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--- 91 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh---
Confidence 34444444444544 6788999999999999999999999999999999997 99999999988888777766654
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHH
Q 011358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (488)
.+...+++++++.|++.+...+...+++.|.+++++ ++..++..+...+
T Consensus 92 -------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 140 (401)
T PRK11043 92 -------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVA 140 (401)
T ss_pred -------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence 356778888999999888777777888999998776 7788888888889
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 240 iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
+|..++|.+++++.+..||++.|++.++..++..+..+
T Consensus 141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 141 LSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999987776665554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=147.66 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+.++...++...+||.+.-+ ..+++.++.++|.++.+.+.+++.+.+.++-.+.|.++||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 44455556667777776644 45678888899999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
..+++.++ .+...+.+..++.|+.+|.-.|.....++.+|++++ ||
T Consensus 107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 88888876 367788888899999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~--~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+..++++.+-|+|+.+.|.+. +++..+.+|+.+|++++++.++..++.+.
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 89988889999999988876555444443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=147.34 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=131.1
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 011358 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (488)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~ 171 (488)
...++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++++
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 44577889999999999999999999999999999999998 99999999999888888887765
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH-HHHH
Q 011358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV 250 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~-~i~~ 250 (488)
.+.+.+++++++.|++.+...+...++++|.+|+++ |+..+++.+.+.++|..+++ ++.+
T Consensus 81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 356788899999999999999999999999999887 99999999999999999999 5666
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 251 ~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.+.+..+|++.|++.+++.++..+..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7777789999998877665554444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=157.55 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=126.1
Q ss_pred HhHhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 011358 95 FMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (488)
Q Consensus 95 yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~ 171 (488)
.+.++++++ ..+.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------- 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------- 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 456789998 88999999999999999999999999997 99999999998888888777664
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~ 251 (488)
.+...++++|++.|++.++..+...+++.|.+|++. |+...+++..+..+|.++++.++..
T Consensus 178 -------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 178 -------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred -------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999988 9999999988999999999988766
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 252 IQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 252 i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+.+ |++.|++.++..++..+..++
T Consensus 239 ~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 239 IPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 643 999999887766665555433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=154.72 Aligned_cols=155 Identities=15% Similarity=0.073 Sum_probs=125.9
Q ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 011358 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (488)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~ 172 (488)
...+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++......
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~------------ 118 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGSG------------ 118 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhcc------------
Confidence 4567789999999999999999999999999999999998 999999888877777666555431100
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i 252 (488)
..+...+++.|++.|++.+...+....++++.+|+++ |+..++++..+.++|+.+++.+..++
T Consensus 119 -----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 119 -----------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred -----------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence 1367889999999999999888999999999999988 99999999999999999999888777
Q ss_pred hhcc---chHHHHHHHHHHHHHHHHHHH
Q 011358 253 QMEH---GWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 253 ~~~~---g~~~~f~i~~~~~~i~~~~~~ 277 (488)
.+.. +|+..|.+.++..++..++.+
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 6543 588888776665544433333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-14 Score=145.32 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=126.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHH-HHHHH-----HHHHHHHhHHHHHhhhccchhH
Q 011358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA-VNNFL-----GISQASSVLGGFLADAYLGRYW 137 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~-~~~~~-----~~~~~~~~~~G~laD~~~Gr~~ 137 (488)
+..||+......+..+++.+....+. .+...+.++++.+..+.+.. .+... +...++.++.|+++||+ |||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~ 87 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRK 87 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHH
Confidence 34556666667777777776665444 45557778888877664432 22221 12236788999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCC
Q 011358 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (488)
Q Consensus 138 ~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (488)
.+..+.++..++.++++++.....+. ......++++|++.|++.+...++...+++|.+|
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 99999999999988887752100000 0001246889999999999988888999999999
Q ss_pred CCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHH
Q 011358 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI 267 (488)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~g~~~~f~i~~~ 267 (488)
+++ |++..+++....++|..+++.+++.+. +..|||+.|++.++
T Consensus 148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 988 999999988888888887777776552 46799999987543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-14 Score=148.27 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=142.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+.+|+.+..+.+..+...+....+ ..+..++.+++|++..+.++..+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 345666666666666666665444 4455567789999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.+++.+. .+.+.+++++++.|++.++..+...+++.|.+++++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 888888877765 367788899999999999999999999999999887
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~ 268 (488)
|+...++++.+.++|..+++.+.+++.+..+|++.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=141.82 Aligned_cols=171 Identities=12% Similarity=0.056 Sum_probs=136.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
+-||.+....+..++..++.+....+++.++ +++|++..+.++..+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 4456677777777777777776777788887 57899999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++..... . ..+...+++.+++.|+|.+...+...+.+.+.+++++
T Consensus 88 ~~~~~~~~~~~~~-----~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~----- 138 (402)
T TIGR00897 88 WCVGHAAFIVFGL-----G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN----- 138 (402)
T ss_pred HHHHHHHHHHHhc-----c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH-----
Confidence 8887665432111 0 0245667788888899887776677778888888877
Q ss_pred hHhHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA 268 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~-~i~~~i~~~i~~~~g~~~~f~i~~~~ 268 (488)
|+++.++++.+.++|. .++|.+++++.+..||+..+|.....
T Consensus 139 -~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 139 -LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999999996 58999999988888876666654443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=142.84 Aligned_cols=153 Identities=13% Similarity=-0.024 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
...+..+.+..+...+........+| .+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 34455566666666666654555444 45889999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+++..... ..+...++++|++.|+|.|...+...++++|..++++ +
T Consensus 103 ~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~ 151 (438)
T PRK10133 103 LGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------G 151 (438)
T ss_pred HHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------H
Confidence 99877642211 0367889999999999999999999999998765554 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~ 253 (488)
....+.+.....+|..+++.+++.+.
T Consensus 152 ~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 152 HFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888889999988876543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-13 Score=139.47 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~laD~~~Gr~~~i~-i~~~~~~l 148 (488)
.+...+..++..+....+...++.|+.+++|++.++.++..+.. ..+..++++++|+ +||+ ||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence 55566667787888777888899999999999999999987655 4466666767777 9998 9988754 44444445
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHH-HHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+.++.+++ .+.+.+++. +++.+++ +...+....+..|..+++.. ..
T Consensus 95 ~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~ 141 (393)
T PRK15011 95 ACTLFAWN----------------------------RNYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGR----EA 141 (393)
T ss_pred HHHHHHHh----------------------------hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccc----hH
Confidence 55544443 234444433 3444443 44556667777776655440 02
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+...++.+.+.++|..++|.+++++.++.||+..|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 344567888999999999999999998899999999877665555544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-13 Score=140.25 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+.+....++..++...+...++. +..++|.+....+++.+.+.+...++.+++|+++||+ |||+++.++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence 555666677766655444444443 4578899999999999999999999999999999998 99999999999888877
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++... .+ .++.|++.|++.+...|...+++.|.+|+++ |+++
T Consensus 83 ~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a 125 (393)
T PRK11195 83 LLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA 125 (393)
T ss_pred HHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 766543 12 2677889999999999999999999999887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
.++.....++|..+||.++|++.+. .|+..+++.+.+.+++.
T Consensus 126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 47766666555444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-13 Score=139.71 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=132.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
.+.++.+++..++..+....+...++.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356888888888888888777788887776 6899999999999999999999999999999998 99999999999888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+.++.+ .+.+.+++++++.|++.+...+...+...+..++++ |
T Consensus 83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 888777664 357788889999999999887777777788887766 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~ 256 (488)
++.+++++.+.++|..+||.+++++.+..
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999887654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=154.27 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=152.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
..+++.+...+....+......++.......+.++|+++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34555554544444454555556777777788899999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhccc-cC-------------CCCCcccccc-----c--ccCCCCCcc--hhhHHHHHHHHHHHHHhc
Q 011358 145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRIS-----Q--LLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~-~~-------------~~~~~~~~~~-----~--~~~~~~~~~--~~~~~~~~~~~~l~g~g~ 201 (488)
++.+|.+++++..+... +. .+.+.|.+.. . ....|.... +..+..++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 99999998887632110 00 0011221100 0 000132222 224567889999999999
Q ss_pred cccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------chH
Q 011358 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (488)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~----------------------g~~ 259 (488)
+...+...+++.|.+|+++ |+..+++++.+..+|..+|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999988 999999999999999999999999887532 277
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011358 260 SAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 260 ~~f~i~~~~~~i~~~~~~~ 278 (488)
.+|++.+++.++..+.+++
T Consensus 261 l~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7888877666665554444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-13 Score=139.68 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=121.0
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 011358 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (488)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~ 171 (488)
...++.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++++....
T Consensus 51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~------------ 116 (452)
T PRK11273 51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA------------ 116 (452)
T ss_pred hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc------------
Confidence 44567777 99999999999999999999999999999998 99999999998888887777654110
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHH-HHHHHHH
Q 011358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLVV 250 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~-i~~~i~~ 250 (488)
..+...+++.+++.|++.+...+.......+++++++ |++++++++.+.++|+. ++|++..
T Consensus 117 ------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 117 ------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred ------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 0245677888889999999888888888999999887 99999999999999874 4555443
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 251 YIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 251 ~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
.+....+|++.|++.++..++..++.
T Consensus 179 ~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 179 GMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34334589999998776655544433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=142.04 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll 153 (488)
+....++..++.......++.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence 33344455555544444455554 56778999999999999999999999999999998 99999988887777766655
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHH
Q 011358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (488)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (488)
++.... .. .+...+++.+++.|++.+...+...+++.|.+++++ |++..++
T Consensus 100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 432110 00 245677788888898888777888889999998877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 234 ~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
.+...++|..+||.+++++.+..+|++.|++.++..+++.+..
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888899999988776665554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=142.33 Aligned_cols=180 Identities=8% Similarity=-0.138 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
..+...+..++..++++.+...++.|+.+++|++..+.+.+.+.+.+...+++++.|+++||+ |||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 467777777777787777899999999999999999999999999999999999999999998 9999998876655444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
...+....... .-......+.++.++..+.......+...+..+... +.++.
T Consensus 90 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~ 141 (420)
T PRK09528 90 FGPFFIYVFAP------------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGF 141 (420)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccc
Confidence 33222110000 000011112222222222222222222223222111 11566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.++..+...++|..++|.+++++.+ .+|++.|++.++..+++++..+..
T Consensus 142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence 6777777889999999999998876 489999988777666655554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-13 Score=140.39 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=124.9
Q ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 011358 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (488)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~ 172 (488)
..++++ +|.+..+.++..+.+.++..++.+++|+++||+ |||+.+.++.++..++.+++......
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------- 114 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------- 114 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-------------
Confidence 445655 599999999999999999999999999999998 99999999888888877765543110
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i 252 (488)
..+...+++.+++.|++.|...+.....+.|.+|+++ |++++++++.+.++|+.+++.+.+.+
T Consensus 115 -----------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 115 -----------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred -----------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHH
Confidence 0245567788889999999888888899999999888 99999999999999999998877754
Q ss_pred h-hccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 253 Q-MEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 253 ~-~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
. ...+|++.|++.++..++..+..++.
T Consensus 178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 178 MAWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4 45689999999877766655444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=142.85 Aligned_cols=178 Identities=22% Similarity=0.247 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHH-HHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIA-IFTTIYL 147 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~i~-i~~~~~~ 147 (488)
.+|.+++..++..+.-|++..|.|.|+.+..|+|..++++..+.|-.+...++++.||+||+++ |||.... ++.+..+
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999 7776554 3333344
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+....+ |+ .+..+..+.++.+|+...+++-.+.....|..|.+. -
T Consensus 333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a 380 (448)
T COG2271 333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A 380 (448)
T ss_pred HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence 444443333 21 356777778888999998888777777778877766 7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 228 ~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
|++.++..+...+ |+.++....|++.|.+||...|.+..++.+++.+.++..
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 8888888887777 999999999999998999999998877777776665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-13 Score=138.77 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=122.8
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 011358 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (488)
Q Consensus 94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~ 173 (488)
..+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++.+
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----------------- 104 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS----------------- 104 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh-----------------
Confidence 345678999999999999999999999999999999997 99999999988888887777664
Q ss_pred cccCCCCCcchhhHHHHHH-HHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 174 QLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (488)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i 252 (488)
.+...+++ .+++.|++.+...+...+++.+.++ ++ |++..++.+.+.++|..++|.+.+++
T Consensus 105 -----------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l 166 (455)
T TIGR00892 105 -----------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYL 166 (455)
T ss_pred -----------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 23444544 4578898888765566677788885 45 89999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 253 QMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 253 ~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+..||++.|++.+++.+++.+..++.
T Consensus 167 ~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 167 FESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 998999999999888766665554444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-12 Score=132.96 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
++.+....+...+.. ++...+...+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 445555555555554 4555566677899999999999999999999999999999999998 99999999999999988
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++..+.. ..+.+.+++++++.|+|.|...+...+++.+..+++. +++.
T Consensus 83 ~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~ 131 (410)
T TIGR00885 83 FLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR 131 (410)
T ss_pred HHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence 77644321 0257788899999999999999999999999988777 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~--------------------------~~g~~~~f~i~~~~~~i~~~~ 275 (488)
.++.+...++|..++|.+.+.+.. ..+|++.|++.++..++..++
T Consensus 132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887632 236999998776655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-13 Score=153.44 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChH--HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+.....++..++..+...++...+..++...++.+.. ..+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3455555666666666555555566666666666543 467888889999999999999999998 9999999988776
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
+++.++..+.... .+.+.+++++++.|++.+...+...++++|.+++++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 6665555443210 257788899999999999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~ 255 (488)
|+.+++++..+.++|.++|+.+++++.+.
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=134.12 Aligned_cols=178 Identities=10% Similarity=-0.103 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.+|......++...++..+..+++.|+++++|++..+.+++.+.+.+...++.+++|+++||+ |||+.+..+.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 367777777887788878888999999999999999999999999999999999999999998 9999998877655544
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.......... +. ........+.+++++.+++.+...+....+..|.-+ + ++.
T Consensus 82 ~~~~~~~~~~----~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFG----PL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhh----hH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 4332211100 00 000122334556677788877777777666655422 1 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
.++......++|..++|.+++.+.+ .+|+..|++.++..++..+..+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566677789999999999988754 5999999987776665554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=144.14 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=129.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+|+.........++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++||+ |||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 455555454555666788899999999999988999988888777778888899999999999998 9999988877654
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+++..... . .+...+++++++.+++.+...+....+..+.+|++.
T Consensus 327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------ 375 (490)
T PRK10642 327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------ 375 (490)
T ss_pred HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence 433332222110 0 234556677777777766666777888889999998
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++++++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998555556677889999999877544 666665555555555544444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=132.88 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=118.5
Q ss_pred HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 011358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (488)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~ 169 (488)
..+...+.+++|++.++.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. ..
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 3344567789999999999999999999999999999999998 99999999988777776654 22
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~ 249 (488)
.+...+++.+++.|+|.+...+.......|.++ ++ |++..++++.+.++|..+++.+.
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888999999998877788888888886 45 89999999999999999999999
Q ss_pred HHHhhcc--chHHHHHHHHHHHH
Q 011358 250 VYIQMEH--GWGSAFGALAIAMG 270 (488)
Q Consensus 250 ~~i~~~~--g~~~~f~i~~~~~~ 270 (488)
+++.+.. +|++.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 8887654 38988876655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-12 Score=129.31 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=114.3
Q ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHhhhccccC
Q 011358 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVFM 163 (488)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~~i-~i~~~~~~lg~~ll~~~~~~~~~~ 163 (488)
.......+.+++|+|.++.+..... .....+ .++.|+++||+ +||||.+ ..+.++..+....+++..
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------ 78 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------ 78 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence 3334444456789999999888644 333333 88999999997 5899975 455555555544444331
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 011358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 243 (488)
+ ..+...+++..++.+++.+...+...++++|.+|+++ |+.+.++...+.++|..
T Consensus 79 ~-------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 133 (356)
T TIGR00901 79 P-------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGML 133 (356)
T ss_pred c-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHH
Confidence 0 0244445555556677777778888999999998877 99999999999999999
Q ss_pred HHHHHHHHHhhccc--------hHHHHHHHHHHHHHHHHHHHH
Q 011358 244 VAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 244 i~~~i~~~i~~~~g--------~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+++.+++++.+..+ |+..|++.+++.+++.+..++
T Consensus 134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777 999999888776665544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=144.90 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=125.9
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 011358 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (488)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 177 (488)
+..+.+.....+..+++.++..+|++++|++||++ |||++++.+.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 45667788889999999999999999999999995 99999999999999999888876
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011358 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (488)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g 257 (488)
.+...+++.|++.|++.++...+...+++|.++++. |+.+.++ ......++.+++.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 578999999999999999999999999999999999 9999999 88888889999999999877 8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011358 258 WGSAFGALAIAMGISNML 275 (488)
Q Consensus 258 ~~~~f~i~~~~~~i~~~~ 275 (488)
||+.+++..+..++.++.
T Consensus 233 Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999887776666555
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-12 Score=132.91 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=134.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhHH-HH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IA 140 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~~-i~ 140 (488)
.++|+.+.+++..+......+.....++.++.+ .|.+..+.+..... ...+++.++.|+++||+ +||||. +.
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~--~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLV--GQAYVFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH--HHHHHHHHHHHHHHHcccccCCCCchHHHH
Confidence 344557777777777777777777778888764 58888888775222 22247889999999995 288885 55
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 011358 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (488)
++.++..++.+.+++.. +. .+.+.+.+.+++.+++.+...+...++..|.+|+++
T Consensus 86 ~~~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~ 140 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE 140 (491)
T ss_pred HHHHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 66666666666655431 11 356677778888898888888899999999999887
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHH
Q 011358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
|+++.++...+..+|..+++.+.+++.+ ..||+..|++.++..++..+..+
T Consensus 141 ------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 ------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 46999999998776665544433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-12 Score=127.99 Aligned_cols=158 Identities=7% Similarity=-0.117 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH-HHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-IYLAGLT 151 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~-~~~lg~~ 151 (488)
.+.+..++...++......++.|+. ++|+|..+.+.+.+.+.+...+++++.|+++||+ ||+........ ...+..+
T Consensus 8 ~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 8 WLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH
Confidence 3444455544554445566777874 6899999999999999999999999999999997 98543321111 1111111
Q ss_pred -HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 152 -GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 152 -ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+...+ .+.+.+++.+.+.+.+.+...+...++..+. .++ |+..
T Consensus 86 ~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~ 129 (382)
T TIGR00902 86 AFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLD 129 (382)
T ss_pred HHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCC
Confidence 11111 3577788888888888887777777765442 233 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~ 268 (488)
++......++|..++|.+++++.+..||+..|++..+.
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 88989999999999999999999999999998876554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-12 Score=129.86 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh----ccchhHHHHHH-HHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~----~~Gr~~~i~i~-~~~ 145 (488)
++.+....+...+++-...++++.|+ +.+|.+...++.+..+..+...+.+++.|+++|| + ||||.++++ .+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence 66677777777788766667777765 6799999999999999999999999999999995 6 999998875 445
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.++++.+.....+... . .-+.........++++..+..++....++...++++|++|+++.+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~--- 149 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR--- 149 (477)
T ss_pred HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence 55555555543211100000 0 000000011234455555566777777888899999999987621
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHh--hc-------------cchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ--ME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~--~~-------------~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
++.+.++.....++|+.+|+.++++.. +. .+.+..|++.+++.+++.++..+..++
T Consensus 150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 467889999999999999999887651 11 156888999888877777766655444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-12 Score=146.32 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcch
Q 011358 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (488)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (488)
...++..+++.+...++.+++|+++||+ |||+++.....+.++...+..+... .
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 105 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-------------------------L 105 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-------------------------H
Confidence 3466777788899999999999999998 9999764422221111111111100 0
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 011358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (488)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i 264 (488)
.+.+.++++++++|++.+...+...+++.|++++++ |+.+.++...+.++|.++||.++|++.+..+|++.|++
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 367889999999999999999999999999999988 99999999999999999999999999998999988854
Q ss_pred HHHHHHHHHH
Q 011358 265 LAIAMGISNM 274 (488)
Q Consensus 265 ~~~~~~i~~~ 274 (488)
.+++.+++++
T Consensus 180 ~~~~~~~~~~ 189 (1140)
T PRK06814 180 LMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-12 Score=128.36 Aligned_cols=156 Identities=8% Similarity=-0.026 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh----HHHHHHHHHHHHHHHHH
Q 011358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (488)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~----~~i~i~~~~~~lg~~ll 153 (488)
.++..+++..+...++.|++ ++|.|..+.++..+.+.+...++.+++|+++||+ ||+ +.+.+...+. .+..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 33334445456667788885 5799999999999999999999999999999998 984 3222222111 1111
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHH
Q 011358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (488)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (488)
... . .+.+.+++.+++.+++.+...+...++..+.. ++ |+..++.
T Consensus 88 ~~~-------~--------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~ 132 (382)
T PRK11128 88 WFG-------A--------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGK 132 (382)
T ss_pred HHh-------c--------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcch
Confidence 111 0 35777778888899988888887777777652 22 5666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 234 ~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
.....++|..+||.+++++.+++||+..|++.++..++..
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 7777789999999999999999999999987776544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-12 Score=125.07 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=147.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+.++|+++...+. +...|..+.+.+.+..++.+++|+|+.|.++++....+...+..++-|++.||+ |-|++..++.+
T Consensus 10 ~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 3444555554444 444555566777788899999999999999999999999999999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..+-.+.++++... .+.+.+++..++.|++.+ ..+...++++..||++.
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 888888888876331 234677778888888855 45777888999999998
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g---~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
+|.+.+++. ..|+|..+...++..+....+ |+....+..+.++++.+.+++..+
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999988 999999999999999888888 998888888888887777766543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=138.16 Aligned_cols=178 Identities=16% Similarity=0.071 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+.+|...+..++....++++..|+|.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3477777888888888888999999999999999999999999889999999999999999998 998877665443333
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+..++.+.. . .+....++.+++.|++..+..........|.+|++. ++
T Consensus 337 ~~~~~~~~~------~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQH------A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHh------c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 322222210 0 133344555666665544433334456679999888 99
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 229 ~~~~~~~~~~~i-G~~i~~~i~~~i~~------------~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
++.++.+...++ |+.++|.+.|++.+ ..+|+.+|++..++.+++++..+..
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 77999999999998 5689999998877777776665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=131.33 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=121.2
Q ss_pred HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 011358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (488)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~ 169 (488)
+....++.+++|-+ ....++...+.++..+..++.|.|+|.+ |||..++++.++.++|.++++.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 45566888888876 4566777889999999999999999986 99999999999999999988865
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~ 249 (488)
.+...++.+..+.|+|.|... .....++|..|.+. |..+..+......+...+++.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 477889999999999977654 55666899999887 87777666555555555677777
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 250 ~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
..+..+.+|||.|++.++...++++..++
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 66666678999999998877777665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-11 Score=123.71 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhH-HHHHHHHHHHHHH
Q 011358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGL 150 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~-~i~i~~~~~~lg~ 150 (488)
...+.+...+.-...-+|.|+++ .|++.++.+++...... .+..++.|+++||+ +|||| .+.++.++..++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34444555555566678999986 49999999988655554 68899999999996 27765 6777777776666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
..+.+.. + ..+.+.+++..++.+++.+...+...++..|.+|+++ |+++
T Consensus 83 ~~l~~~~------~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~ 131 (402)
T PRK11902 83 AAMAFCP------P-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAG 131 (402)
T ss_pred HHHHhcC------c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHH
Confidence 6655431 0 0245556656566777788888999999999999888 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~-~g~~~~f~i~~~~~~i~~~~ 275 (488)
.++...+.++|..+++.+.+++.+. .||+..|++.++..++..+.
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888875 59999999877766554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-11 Score=124.59 Aligned_cols=129 Identities=21% Similarity=0.262 Sum_probs=100.6
Q ss_pred HHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHH
Q 011358 118 SQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT 197 (488)
Q Consensus 118 ~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (488)
..++.++.|+++||+ |||+++.++.++..++.++++++...... .......++++|++.
T Consensus 48 ~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 48 RPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--------------------GIWAPILLLLARLIQ 106 (394)
T ss_pred hhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--------------------HHHHHHHHHHHHHHH
Confidence 346889999999997 99999999999988888877765210000 001123578889999
Q ss_pred HHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHH
Q 011358 198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (488)
Q Consensus 198 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~g~~~~f~i~~~~~ 269 (488)
|++.+...+...++++|.+++++ |+...++.+.+..+|..+++.+.+.+. +..+|++.|++.++..
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 180 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV 180 (394)
T ss_pred HhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence 99999999999999999999888 999999999999999999988776553 3568999998776655
Q ss_pred HHHH
Q 011358 270 GISN 273 (488)
Q Consensus 270 ~i~~ 273 (488)
+++.
T Consensus 181 ~~~~ 184 (394)
T TIGR00883 181 LIGL 184 (394)
T ss_pred HHHH
Confidence 5443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-12 Score=128.35 Aligned_cols=168 Identities=10% Similarity=0.051 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~ 155 (488)
...+.....++.+..+++.|+++++|++..+++.......+...++.+++|+++||+ |||+.+..+.+...+....+..
T Consensus 223 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 301 (393)
T PRK15011 223 VICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLM 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555667899999999999999988888777777888899999999997 9999887766544443332222
Q ss_pred hhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHH
Q 011358 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (488)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (488)
. .+...+.+.+++.+++.|...+....+..|.+|+ . +++..++++
T Consensus 302 ~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~ 346 (393)
T PRK15011 302 A----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYT 346 (393)
T ss_pred H----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHH
Confidence 1 1344455566666666665555666777888874 4 788999988
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 236 ~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
...++|..+++.++|++.+..||+..|++.+++.++++++.+..
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999998899999998877777776665543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=127.23 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=132.2
Q ss_pred HHHHHHHhHhhcCCChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 011358 89 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (488)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~ 167 (488)
.+.+..|+.+++|++.++ .+.+.+.+..++.++.+++|+++||+ |.|+++.++.+...+..++++++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344666888999999999 99999999999999999999999997 99999999999888888888875
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~ 247 (488)
.+...+.+.|++.|++.|... ....++..++|+++ |+++.+++..+.++|.++++.
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999998 99999999999988 999999999999999999999
Q ss_pred HHHHHhhccchHHHH---HHHHHHHHHHHHHHHH
Q 011358 248 LVVYIQMEHGWGSAF---GALAIAMGISNMLFFI 278 (488)
Q Consensus 248 i~~~i~~~~g~~~~f---~i~~~~~~i~~~~~~~ 278 (488)
+++++ ..+||++-+ ++......+++++.++
T Consensus 169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99994 467887644 4555555566555444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=126.34 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHHHHHHHHHH
Q 011358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (488)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~-~i~i~~~~~~lg~~ll~ 154 (488)
+...+.+..+..+++.|+++.+|++...++.+.+...+...+..++.|+++||. +|||| .+.++.....++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 444556666777899999999999999999999999999999999999999984 48865 45566666666666665
Q ss_pred HhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC-CCchhhhhHhHHHHH
Q 011358 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNF 233 (488)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~ 233 (488)
..... . .......+++.+++.+++.+.......++.+|..++ ++ |++..++
T Consensus 89 ~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPDF---S-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCCC---C-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 43110 0 002344555566677777777777778888888743 33 8888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hccchHHHHHHHHHHHHHHHHHHH
Q 011358 234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 234 ~~~~~~iG~~i~~~i~~~i~-------~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
.....++|+.++..+.+.+. +..+|++.+++.++..++..+...
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 191 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF 191 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877766655543 245799888877766655554433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-16 Score=163.11 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchh
Q 011358 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (488)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
..++..+...++..+|.+++|+++||+ |||+++.++.++..++.++..++.. ..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------------YN 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------------cc
Confidence 467888899999999999999999998 9999999999999999988887621 01
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchHHHH
Q 011358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (488)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~---~~g~~~~f 262 (488)
+...+.++|++.|++.|+..+....++.|..|++. |+...++.+....+|..++..+.-.+.+ ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 57889999999999999999999999999999988 9999999888888888888766543322 34599888
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccccccccccCCCcccccCCcccc
Q 011358 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 336 (488)
Q Consensus 263 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (488)
++.++..++.++... ..||+|+| ++.+++.+++.+...+++
T Consensus 175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~ 215 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLR 215 (451)
T ss_pred ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccc
Confidence 776665544333221 15788888 777777777666655543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-11 Score=127.53 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=130.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
++++.........++..+.+|...++++.|+++.+|++......+.........++.+++|+++||+ |||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444444556677788888999999999999999887655555556666778889999999997 999998877665
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+.+..... .. .....+++..++.+++.+...+..+++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5544433322210 00 123333445556677777777788899999999987
Q ss_pred hHhHHHHH-HHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHh
Q 011358 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 226 ~r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~--g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
|+++.++ +..+..+|+.++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9989888 44556689999999999997743 48888877777777776665544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=126.67 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++..+..+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 456666666666677788899999999999999999999999999999999999999999997 9999887766655554
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
..++... .+...+.+..++.|++.+...+...++..+..+.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4433322 12333444556677777777777777777776543 355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
..++.+...++|+.++|.+.|++.+..|++..|++.+++.+++.+..+
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 567777788999999999999999989999999887776666655433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-11 Score=125.26 Aligned_cols=169 Identities=13% Similarity=0.060 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 011358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (488)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~ 158 (488)
.+..+.++.+..+++.|+.+ .|++ ..+.....+.++..++.++.|+++||+ |||+.+.++..+..++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 33455566667778888764 4553 345556667778888999999999997 99999888887777776655543
Q ss_pred ccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHH
Q 011358 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (488)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~ 238 (488)
.+...++++.++.|++.+...+.......|.+|++. |++..++++...
T Consensus 300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 234456667788899888877777777888888776 999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011358 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (488)
Q Consensus 239 ~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (488)
++|..+++.+.|++.+..||++.|++.+++.+++++..+..+++.++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999998999999998888877777666655554433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=128.96 Aligned_cols=172 Identities=14% Similarity=0.057 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
++.++......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA 296 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 33466666777777788888889999999889999999999888888899999999999999997 99998776554443
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+..++...... .+ .+...+++..++.+++.+...+...+++.|.+|++. |
T Consensus 297 ~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 346 (394)
T TIGR00883 297 LLAVPLLMALL-----DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R 346 (394)
T ss_pred HHHHHHHHHHh-----cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence 33211111100 00 134455566677788888888889999999999888 8
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHH
Q 011358 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMG 270 (488)
Q Consensus 228 ~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~ 270 (488)
+++.++ +..+..+|+.++|.++|++.+..| |++.++..+++.+
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 888887 456677899999999999999888 8776665554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=134.26 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHH
Q 011358 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (488)
Q Consensus 111 ~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (488)
..+..++..++.+++|+++||+ |||+++.++.++..++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 4445577888999999999997 99999999888887777766654 123345
Q ss_pred HHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 011358 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (488)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~ 270 (488)
++.+++.+++.++..+...++.+|++|.+. |++++++.+....+|++++|.+++++.+. +....|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 555666777777777888999999999988 99999999999999999999999988664 45567777777666
Q ss_pred HHHHHHHH
Q 011358 271 ISNMLFFI 278 (488)
Q Consensus 271 i~~~~~~~ 278 (488)
++.++.++
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=121.27 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-~i~i~~~~~~lg 149 (488)
.+...+..++..........+++.++.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++..+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 44444555566666667778888888888899999999999999999999999999999998 9999 888888888888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+.+... .+...+++..++.+++.+...+...++..|..|+++ |++
T Consensus 256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 301 (352)
T cd06174 256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT 301 (352)
T ss_pred HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence 7776654 245667778889999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
.+++++...++|..+++.+.+++.+..+|+..|++.++..+++.+..+
T Consensus 302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999888999999988888777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=124.29 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+.+....++..+.......+.+.|. +++|.+..+++.....+.++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 34444444444444444555566665 56889988888888899999999999999999997 99999988888777777
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++..... .+...+++..++.+++.+...+...++.+|.+|+++ |++.
T Consensus 285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~ 332 (377)
T TIGR00890 285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN 332 (377)
T ss_pred HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence 66554310 122234445566777778777778889999999888 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
+++++...++|..++|.+.|++.+..||++.|++.+++.++++
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988777666554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-11 Score=122.15 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+.+.+..++..+.++++..+++.|+.+ +|++..+++.....+.++..++.+++|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4555555666677888899999999976 799999999999999999999999999999997 99999888877776666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC-CCchhhhhHhH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~ 229 (488)
+++... + .+...+. .++.|++.+...+.......+.+++ +. +++
T Consensus 285 ~~~~~~-------~--------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~ 329 (393)
T PRK09705 285 CGFIWL-------P--------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK 329 (393)
T ss_pred HHHHHc-------c--------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence 544422 1 1111121 2345777777777776677777753 33 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
.+++.+...++++.++|.+.|++.+..| |...|++.+++.++..+..+...++
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999876 8888888877777776666555544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=122.35 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (488)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~ 162 (488)
........+++.|+.+++|.+..+.+.......+...++.+++|+++||+ |||+++.++.++..++.+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------ 285 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD------ 285 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH------
Confidence 33444556788899889999999888887777777777889999999997 99998887766554444333322
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 011358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (488)
.+.+.+++..++.+++.+...+....+..|..|++ +++..++++...++|.
T Consensus 286 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 286 ----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGW 336 (375)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHH
Confidence 24455556667778887777777778888887653 5689999999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 243 ~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.++|.+.|++.+..||+..|++.+++.+++.+....
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999999999999889999999888877777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-10 Score=119.68 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
+..+....+..+++.+....-++-++ .++.-|....+++..+..+-..+..+++|.++||+ .|||+++.+.++..+..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence 33344445555555543333333333 34556788888888888899999999999999998 99999999988777666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+.+++..... ..+.+.+++..++.|++.+...|...+++.++.|+++ ...+
T Consensus 90 ~~L~~l~~~~-----------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A 140 (524)
T PF05977_consen 90 LLLAVLAFFG-----------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAA 140 (524)
T ss_pred HHHHHHHHhC-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHH
Confidence 5555442211 0356778888889999999999999999999999888 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.++.....|+...+||.++|.+....|-.+.|++.+++.+++.+++...
T Consensus 141 ~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 141 NALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999888888889998888777665554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=121.41 Aligned_cols=180 Identities=12% Similarity=-0.006 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-i~i~~~~~~ 147 (488)
+..+...+..++.....+.+..+++.|+.+.+|.+..+++.......++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3467777777788888888889999999999999999999999989999999999999999998 88861 111111111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+...+....... . ...... +...+.+.+..+..+...++.+|.+|++. |
T Consensus 294 ~~~~~~~~~~~~~~~-~--------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNY-V--------------------NIPYAA-LALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhcc-c--------------------hhHHHH-HHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 111111111000000 0 122222 23333333333367888999999999888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~ 277 (488)
++.+++++...++|..++|.+.|++.+..| |...|++.+++.+++.+..+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 99999887777766665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-11 Score=124.92 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--hHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIYL 147 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr--~~~i~i~~~~~~ 147 (488)
.++.+.+..++..+.++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.++ +...........
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 366666666666677778888999999888999999999999999999999999999999997332 222222221111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+..+.+..... .+....++..+..|++..+.........+|.++++. |
T Consensus 324 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 12111111100 122222233333444333333334556688888777 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
++..++.+...++|+.++|.+.|++.+..||+..|++.+++.+++.+..+...+
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888887776665554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-11 Score=124.45 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHH-HHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIA-IFTTIY 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~i~-i~~~~~ 146 (488)
+.++...+..++.....+++..++|.|+++++|++..+++.....+.++..++.+++|+++||+. |||+... ....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 34677777777777777888999999999999999988888888888888899999999999972 3343322 222222
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+++.+. +. .+....+++.++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 2332222221 00 122333344444454433333333456678999888
Q ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i-~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|++.+++.+...++|+.+ +|.+.|++.+..||+..|++.+++.+++++....
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888655 7999999999999999999887776666555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=121.25 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~l 152 (488)
.+....++....++.+..++|.|+.+ .|++..+.+.....+.++..++.++.|+++||+ ||++.+.++.+...++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 301 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA 301 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 33344444455666777888988865 799999999999999999999999999999997 9999888766555555444
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHH
Q 011358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (488)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (488)
+... .+...+++..++.|++.++..+...++..|.+|++. |++..+
T Consensus 302 ~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 347 (406)
T PRK11551 302 LAAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG 347 (406)
T ss_pred HHhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence 3332 133344555566777777777888899999999888 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHH
Q 011358 233 FFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 233 ~~~~~~~iG~~i~~~i~~~i~~~~-g~~~~f~i~~~~~~i~~~~~~ 277 (488)
+++....+|..++|.+.|++.+.. +|...+++...+.+++.+..+
T Consensus 348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 466666665555555544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-11 Score=121.35 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011358 80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (488)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~ 156 (488)
+..+....+..+++.|+.+..+.... ..+.+.....++..++.++.|+++||+ |||+.+.++..+..++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence 33344445566677787765443222 234445556677778889999999997 99999988887766665554432
Q ss_pred hhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHH
Q 011358 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (488)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (488)
.+.+.+++.+++.|++.+...+...+...+..+++. +++.+++++.
T Consensus 309 ----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 309 ----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred ----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 234556677788899999888888888888888777 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 237 ~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
..++|..+||.++|++.+..||++.|++.+++.+++.+..+...
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777766655433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=122.15 Aligned_cols=177 Identities=11% Similarity=0.044 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
...+..++..........+++.|+.+ .|.+ ....+...+...+...++.++.|+++||+ |||+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 33333444444444455666777754 4543 35567888888888889999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.+++..... . ..+...+++..++.|++.+...+....+++|.+|++.
T Consensus 290 ~~~v~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---- 341 (418)
T TIGR00889 290 AWALRFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---- 341 (418)
T ss_pred HHHHHHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence 88777665554210 0 0134556677888898888888888899999999888
Q ss_pred hhHhHHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 225 ~~r~~~~~~~~-~~~~iG~~i~~~i~~~i~~~------~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
|++.+++++ ....+|+.+||.++|++.+. .||+..|.+.+++.+++.+.+++..+
T Consensus 342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999886 46999999887776666666555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-11 Score=125.24 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=114.5
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~ 166 (488)
++..++|.|+++.+|++..+++...+...++..++.+++|+++||+ |||+++.++.++..++.+++.... +
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------~- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-------G- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-------c-
Confidence 4667899999889999999999999999999999999999999997 999998877665554443332210 0
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
.+...+.+..++.++...+..+...++..|.+|++. |++.+++++...++|+.++|
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 123333333333333333344667788899999877 99999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHH
Q 011358 247 TLVVYIQMEHGWGSAFGALAIAMGI 271 (488)
Q Consensus 247 ~i~~~i~~~~g~~~~f~i~~~~~~i 271 (488)
.+.|++.+..||+..+.+.+++..+
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999998877655544333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-11 Score=121.89 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=124.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+|+.........++..+..++...+++.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~ 314 (405)
T TIGR00891 236 RWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAG 314 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHH
Confidence 344344444444444555567778899999999999999999999999999999999999999997 9999888777654
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.+..+.+... . .+...+.++.++.+++.++..+...+++.|.+|++.
T Consensus 315 ~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 361 (405)
T TIGR00891 315 QLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------ 361 (405)
T ss_pred HHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------
Confidence 3322221111 0 133445555556666666667778889999999888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i 264 (488)
|++.+++.+...++|+.++|.+.|++.+..| |+..+..
T Consensus 362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999888 8766654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=122.76 Aligned_cols=178 Identities=9% Similarity=-0.011 Sum_probs=129.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 011358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~ 143 (488)
..+||..+...++...+.... |++.. ....+.+++|++..+.+++.+.... ..++.+++|+++||+ |||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 355666555555555554433 35544 3446788999999998888766433 345667789999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 144 ~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
++..+|+++++++.... + . .+.+.+++.+++.|+|.+...+.....+.++|| ++
T Consensus 99 ll~~iG~ll~ala~~~~-i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--- 152 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEV-I-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--- 152 (591)
T ss_pred HHHHHHHHHHHHHhccc-c-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence 99999999888752210 0 0 267888999999999999888888888899997 45
Q ss_pred hhhHhHHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i-~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
|+...++......+|+.+ +++..+++.+ +|+..|++.++..++..++.
T Consensus 153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999975 5655555543 57766766555544443333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-10 Score=116.95 Aligned_cols=174 Identities=14% Similarity=-0.046 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..++.....++...+++.|+.+.+|.+..+++.....+.++..++.++.|+++||+ |||+. .++..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHH
Confidence 33344444454555666677888898888999999999998889999999999999999997 98764 44444443433
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
.++.... .+...+++..++.|++.+...+...+.+.+..| +. |+++
T Consensus 285 ~~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~ 330 (390)
T PRK03545 285 LLLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVA 330 (390)
T ss_pred HHHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHH
Confidence 3322210 244556666677788777666666777777765 34 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
+++++...++|..+||.++|++.++.|++..|++.+++.+++++......
T Consensus 331 ~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 331 MALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99998889999999999999999999999999998888887777765544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=105.34 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 011358 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (488)
Q Consensus 113 ~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (488)
.+.++..++.++.|+++||+ |||+.+.++..+..++.+++... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 35567788899999999997 99999998888877777666543 24566777
Q ss_pred HHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 011358 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (488)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~ 272 (488)
.+++.|++.+...+...++..|.+|+++ |++..++.+....+|..+++.+.+++.+..+|++.|++.++...++
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8888999999888899999999999888 9999999999999999999999999988889999998877766666
Q ss_pred HHHHHHh
Q 011358 273 NMLFFIG 279 (488)
Q Consensus 273 ~~~~~~~ 279 (488)
.+.....
T Consensus 131 ~~~~~~~ 137 (141)
T TIGR00880 131 FILLAFL 137 (141)
T ss_pred HHHHhhc
Confidence 5554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=119.13 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 011358 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (488)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~ 159 (488)
+..+.+..+..+.+.|+.+ .|++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++...
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3345555666777778764 46653 45555667777788999999999997 99999988888777776655543
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHH
Q 011358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (488)
.+....+++.++.|++.+...+...+...+.++++. |++.+++++...+
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 234456667778888888777888888889988877 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 240 iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
+|..++|.+.|++.+..||+..|++.+++.+++.++.+..
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888777777665543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=121.95 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=141.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 011358 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (488)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
.++-++++.+++.+.+.+...+..++.|.+.||+ |+|-.+++|.+++...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 3556778899999999999999999999999997 99999999999999999999886
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
..+++++++|.++|+|.++...+..++++|.||++.. |++.++..--...+|-.+||.++|.+-+..|+
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 3678999999999999999999999999999998763 89999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccc--CCCCCchhHHH
Q 011358 259 GSAFGALAIAMGISNMLFFIGTPLY-RHR--LPGGSPLTRVA 297 (488)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~l~~~~ 297 (488)
...|.+.++++++..++.++..+.+ .+. .+++.|+.++.
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll 267 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLL 267 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHH
Confidence 9999998888777766655554433 222 45566665544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=119.93 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 011358 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (488)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~ 164 (488)
..++..+++.|+.+.+|.+....+.+...+.++..++.+++|+++|+. ++++.+..+..+..++.+++...
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 346777889999888999999999999889999999999999999986 77888887777766666555432
Q ss_pred CCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 011358 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (488)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (488)
.+.....++.++.|++.+...+...+++.+.+|++. |++.+++++...++|..+
T Consensus 310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI 363 (417)
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence 244555666777888877766777788899999877 999999999999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 245 ~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
||.+.|++.+..|++..+++.+++.++..++.....+
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999989888887766655554444444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=119.59 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
|+.....+...++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.++..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~ 315 (434)
T PRK15075 237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAI 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 33333334444455667778889999999988999998888888788888899999999999997 99998877654433
Q ss_pred HHHHH-HHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 148 AGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 148 lg~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
+..++ ...... + .+.....+..++.+++.+...+...++..|.+|++.
T Consensus 316 ~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------ 364 (434)
T PRK15075 316 LTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------ 364 (434)
T ss_pred HHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------
Confidence 22211 111100 0 122223333444555666656666788999999988
Q ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHhhccch
Q 011358 227 LDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 227 r~~~~~~~~~-~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
|++++++.+. +..+++.++|.+.|++.+..|+
T Consensus 365 rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 365 RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 9999998544 4445688899999999998775
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-11 Score=123.20 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhHhhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 011358 83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (488)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~ 159 (488)
+.+.....+++.|+.+.+ +.+....+.+.+...++..++.+++|+++||+ |||+.+.++..+..++.+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc---
Confidence 334344456777776543 55666778888888888889999999999998 99999988888777777666553
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHH-HHHHH
Q 011358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV 238 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~ 238 (488)
.+.+.+++.+++.+++.+...+....++.+.+|++. +++..+. ++...
T Consensus 313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~ 361 (420)
T PRK09528 313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK 361 (420)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence 245566677778888877777777788899998877 7776655 67788
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 239 ~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
++|..+++.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877766655544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=116.40 Aligned_cols=176 Identities=14% Similarity=0.053 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~-i~~~~~~l 148 (488)
.++...+..++....+++..+++|.|+. ++|++..+++.......++..++.++.|+++||+ |||+.+. .+.....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3566666677777888889999998885 5899999988888888899999999999999997 9888764 22222233
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+.+.+...... .. .+....++..++.|++.+...+ ......+..| ++ |+
T Consensus 301 ~~~~l~~~~~~---~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQH---FG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHHc---cC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 22222221100 00 1344455566677777766544 3455566544 45 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+++++++...++|+.++|.+.|++.+..||...|++.+++.+++.+...+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888877776665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=116.36 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011358 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (488)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~ 162 (488)
+.+.....++|.|+++ .|.+....+...+...++..++.++.|+++||+ |+|+.+..+.++..++.+... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444556678888865 699998889888888899999999999999998 999998888777666654332 1
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 011358 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (488)
. ...+..+++.+++.+...+...+...|..|+++ ++...+.++...++|.
T Consensus 285 -----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 -----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred -----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1 112334455666666667888888888887765 6777777788899999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 243 ~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
.++|.++|++.++++|++.|.+.+.+.+++.+..
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777766554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=117.54 Aligned_cols=170 Identities=10% Similarity=0.010 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhh
Q 011358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (488)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~ 157 (488)
.++..+.+|++.+|+|.|+.+.+|++..+++........+..++.+++|+++||+ |||+.+.++..+..+..+......
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677889999999999988999988888877777777788888999999997 999988776554333322221110
Q ss_pred hccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHH
Q 011358 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (488)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~ 237 (488)
. .. .+....+....+..++.+...+....+.+|.||++. |++++++.|..
T Consensus 331 ~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~ 380 (432)
T PRK10406 331 Q-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAV 380 (432)
T ss_pred H-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHH
Confidence 0 00 111111111222222333333456788899999998 99999997655
Q ss_pred HH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 238 VT-VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 238 ~~-iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.+ +++..+|.+.+++.....|...+++.+++.+++++..++
T Consensus 381 g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 381 ANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44 445568888886644333666666666666666555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-10 Score=119.02 Aligned_cols=173 Identities=10% Similarity=0.069 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (488)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~ 156 (488)
.++..+..+....+.+.|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677888988889999999998874 45578899999999999998 99988777665545444332221
Q ss_pred hhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHH
Q 011358 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (488)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (488)
... . .+...+.+..++..++.|...+...++..+..+++. +++.+++.+.
T Consensus 310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s 359 (491)
T PRK11010 310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA 359 (491)
T ss_pred Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence 110 0 123333334444444444444566788888888887 7888999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 237 ~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
..++|..+++.+.|++.+..||+..|.+.+++.+++++.....++
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988889999999999999999888888887776665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-10 Score=114.82 Aligned_cols=170 Identities=9% Similarity=-0.073 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+.++...+..++...+.+.+.++.+.|+++ +|.+....+.......+...++.++.|++.||+ |+|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 346666666677677777888899999965 899999999988888888889999999999997 999999999998888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
..++++.. .+.+.+++...+.|+..+...+....++.+. |+++ ++
T Consensus 283 ~~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~ 327 (382)
T TIGR00902 283 RWAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA 327 (382)
T ss_pred HHHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence 88777654 3667778888999999999999999999987 7666 88
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 229 ~~~~~~~-~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~ 276 (488)
++.++++ .+..+|..+++.++|++.+..|+ ..|++.+++.++++++.
T Consensus 328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 8888876 46789999999999999999886 56777666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=120.54 Aligned_cols=173 Identities=7% Similarity=-0.019 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHH-
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIY- 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~-~Gr~~~i~i~~~~~- 146 (488)
+.++..++..++..++++....+++.|+.+ +|++..+++...+...++..++.+++|+++||. +++++...++..+.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 346666666666777777888889999864 799999999999999999999999999999984 24444444333222
Q ss_pred -HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 147 -LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 147 -~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
.++.+++... .+.+.+++.+++.|++.+...++..+++.|.+|++.
T Consensus 320 ~~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~----- 366 (455)
T TIGR00892 320 NGLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR----- 366 (455)
T ss_pred HHHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH-----
Confidence 2222222222 245666777888999999888899999999998877
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-g~~~~f~i~~~~~~i~~~~~ 276 (488)
+++.+++++...++|..++|.++|++.+.. +|++.|++.+++.+++.+..
T Consensus 367 -~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 367 -FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred -HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 899999999999999999999999998876 59999998887766665543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-10 Score=116.82 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=118.4
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 011358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (488)
Q Consensus 97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
.+++++...+.+.+.++|.+++.++.+++|.|.||+ .-.+.+....++..+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 356778888899999999999999999999999997 85555544444333322222221
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 011358 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--- 253 (488)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--- 253 (488)
.+.+.+++.|++.|+.+++..|+...+++.+|.+++ |+.-+++++.+..+|+++|.+++..+.
T Consensus 132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 478889999999999999999999999999999998 999999999999999999999987753
Q ss_pred ---hccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 254 ---MEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 254 ---~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
...||+|.|.+.+++.++..++.++.
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 24689999999887766655554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-10 Score=109.88 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=130.0
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~ 166 (488)
.....+...+++.++++..+++++..++..++.++.+..|++.+|+ |+|+.++.++.++.+|..+..-++.
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------- 100 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------- 100 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 3455678889999999999999999999999999999999999998 9999999999999999888764422
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
..++..+++++++.+.|.+..+...+++++.+.+++. -..-+++......+|+.++|
T Consensus 101 -----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 101 -----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred -----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHH
Confidence 1467889999999999999999999999999999876 45556677778889999999
Q ss_pred HHHHHHhhc-------------------cchHHHHHHHHHHHHHHHHHHHH
Q 011358 247 TLVVYIQME-------------------HGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 247 ~i~~~i~~~-------------------~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.+++++..+ ..++..|...+....+..+....
T Consensus 158 ~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 158 LLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 999877652 13666766655544444444433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-10 Score=116.28 Aligned_cols=186 Identities=13% Similarity=0.036 Sum_probs=147.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT 144 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~--~~i~i~~~ 144 (488)
+.|.+...++..++.+-+...+.+....|.++++|++..+...+.....+...++.+++|++.||+ |.| +++.++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 335666677777777778888889999999999999999999888889999999999999999997 988 88877776
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..+..+.-.+......... .+.+.+++.-++.|+..|+.++..-++.+++.|++.
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~--------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---- 413 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGL--------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---- 413 (477)
T ss_pred HHHHHHHHHHHHhhhcccCc--------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence 55332222111000000000 245567777789999999999999999999999988
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+.+|++|.+..-..+.+||++.|.+.+..| -|.++....+..+++++++...
T Consensus 414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999998776 8889888888888777776544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=120.04 Aligned_cols=182 Identities=15% Similarity=0.072 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++.....+++..++|.|+++..|++..++++....+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 456666666666677788989999999998999999999988888899999999999999997 6543223333222211
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+....... .+. .+.....+..++.|++..+..........|.+|++. |++
T Consensus 331 ~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 381 (438)
T TIGR00712 331 TIAVIVYWM----NPA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 381 (438)
T ss_pred HHHHHHHHh----cCC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence 111111000 000 122223333444454433322233345678888877 999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 230 ~~~~~~~~~~iG~-~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
+.++++...++|+ .++|.+.|++.++.||..+|++.+++.+++++..++..+
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888875 689999999999999999998877776666666555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-10 Score=111.10 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+..+...+..++...+-.++..|++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |+++.+.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3455555555555556667888999999854 799999999999999999999999999999997 9999888887776
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.++.... .... ...+.++.|++.+...|...+...+.++++.
T Consensus 219 ~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~------ 263 (310)
T TIGR01272 219 VLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT------ 263 (310)
T ss_pred HHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------
Confidence 6665444332 0111 2235557899999999999998888887643
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~ 270 (488)
+++.++. ....+|+.+.|.+.|++.|..|.+.+|++..++.+
T Consensus 264 -~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 264 -SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred -hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 2333343 45678999999999999998898888886555433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=107.81 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=139.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 011358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (488)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~ 142 (488)
.......++|.+..+.++...+.+-+.+..+.++++++|+|...++.+.+...+...+..++.|.++|++ |++...+.+
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~ 336 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVAS 336 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHH
Confidence 3333344688999899998888888888899999999999999999999999999999999999999998 998766655
Q ss_pred HH-HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358 143 TT-IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (488)
Q Consensus 143 ~~-~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (488)
.. ...++...++++ ...-+++..+.|+..+......++.++-..|+++
T Consensus 337 a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q- 385 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ- 385 (459)
T ss_pred HHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH-
Confidence 43 444555555543 2334566677777777666668899999999988
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHHh
Q 011358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g---~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.|++++..+...|+|-.+.|+++|.+.+.-| |--.|.+..+.+.+..+..++.
T Consensus 386 -----LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 386 -----LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred -----hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988654 4445555444444444444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=117.74 Aligned_cols=185 Identities=13% Similarity=-0.007 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
++..++..+........+..+.+ ++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 33333333333333333444444 44457899988888888888889999999999999997 99999998877777776
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++.+...... ++ .........+....++.+....+..+....+.+|.+|++. |++.
T Consensus 364 ~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~ 420 (481)
T TIGR00879 364 FVLGILGASFV--TG---------------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKG 420 (481)
T ss_pred HHHHHHhhccc--CC---------------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHH
Confidence 66653211000 00 0000022222222222222222334666777899999887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
.++.+...++|++++|.+.+++.++.+|.+.|++.+++.+++.++.++..
T Consensus 421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheec
Confidence 99999999999999999999999888999999888777666666554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=108.98 Aligned_cols=165 Identities=13% Similarity=-0.017 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLT 151 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~i~i~~~~~~lg~~ 151 (488)
.+.+..++...++-...+.++.|+.+++|++..+.+++.+.+.++..++++++|+++||+ || |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 344555555555545568899999999999999999999999999999999999999997 65 7777777766656555
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC--chhhhhHhH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--KDYKTHLDR 229 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~--~~~~~~r~~ 229 (488)
+..+. .+.+.+++.+++.+++.+...+...+...+...++. -.+...|.+
T Consensus 85 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r 136 (418)
T TIGR00889 85 FAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIR 136 (418)
T ss_pred HHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCee
Confidence 55443 245556667777777665554444433221111000 000001333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~ 273 (488)
.++ .+|..++|.+++.+.....|. .|++.++..++..
T Consensus 137 ~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 137 VMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred eeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 333 368888888888774433354 4555555444444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=116.51 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH--HHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL 147 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~--~~~ 147 (488)
.++.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.+++|+++||..+|++....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 466666677777777778888999999999999999999999999999999999999999986344443322211 111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++....... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 111111110 00 133344445555666555555666778899999888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f 262 (488)
++..++++...++|+.++|.+.|++.+..||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=117.27 Aligned_cols=178 Identities=14% Similarity=0.083 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchhHHHH-HHHHHHHHHHHH
Q 011358 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTG 152 (488)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD----~~~Gr~~~i~-i~~~~~~lg~~l 152 (488)
.+...+.+.....+++.|+++.+|+++...+.+.....+...+..|+.|+++| |+ ||||..+ ++.+...++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35555666667778999999999999999999999999999999999999999 66 9776655 566677776666
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHH
Q 011358 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (488)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (488)
+.... |. +.+.......+.+..++..++......+..++.+|+.++.++ |....+
T Consensus 89 lf~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 89 LFSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hhccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 55320 00 000001233345555667888888889999999999876442 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 233 FFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 233 ~~~~~~~iG~~i~~~i~~~i~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
+-.....+|..+...+.+.+.+. .+|++..++.+++.+++.++..+..|
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~k 199 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVK 199 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheee
Confidence 87777777776555555544321 16887777776666666555555433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=107.65 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 011358 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (488)
Q Consensus 103 s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (488)
+..-+|.+-+.|.++..+.++..|.+||++ |||++++++.+..++.+.+.+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 445678888999999999999999999998 99999999999888887777765
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
.+...++++|++.|+..|- ...+.++++|.+++++ |+.+++....+..+|.++||.++|++.+
T Consensus 119 --~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4677788889999999885 4778899999999988 9999999999999999999999999987
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-09 Score=110.14 Aligned_cols=180 Identities=9% Similarity=0.026 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHH-HHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT 143 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i-~i~~ 143 (488)
++..+.-.+..+..++.+..+..+++.|+++.+|++...++.+..+..+...+..|+.|+++||. +||||.. +.+.
T Consensus 8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~ 87 (444)
T PRK09669 8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA 87 (444)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence 33344444555666776777788899999999999999999999999999999999999999993 3886554 4555
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 144 ~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
+...+..+++... +... .......+++...+.+.+.........++.+|+.++.+.
T Consensus 88 ~~~~i~~~l~f~~---p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-- 143 (444)
T PRK09669 88 IPFGVVCLLTFYT---PDFG-------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-- 143 (444)
T ss_pred HHHHHHHHHHHhC---CCCC-------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH--
Confidence 5555555443322 1000 012344455555555666666677778899998754321
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHH
Q 011358 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-------~~g~~~~f~i~~~~~~i~~~ 274 (488)
|.+..++.....++|..+++.+...+.. ..+|+..+.+.+++..+..+
T Consensus 144 ---R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 144 ---RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 7888888777778887777665433322 24677666665555444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=112.14 Aligned_cols=184 Identities=13% Similarity=-0.027 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+..|.+.+..+..--++.++..+++.|++++++.++.+++.....+.....+..++||+||||+ |.+|+..+....+++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 3488888888888888889999999999999999999999999999999999999999999998 988888888777777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+...+.+..... .. ..+...+++..+..++..|.-.+.+..++...|+.+ .+
T Consensus 297 ~~~~l~~~~~~~--~~-------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G 348 (417)
T COG2223 297 AAALLSLFLTGF--GH-------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TG 348 (417)
T ss_pred HHHHHHcccccc--cc-------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hh
Confidence 766665542100 00 012333333333334444444445555666666653 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
...++.....++|+..-|...+...+.+| +...|++...+.+++.+.....+.
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889899999999999999999888877 999999988888877776555433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-09 Score=110.21 Aligned_cols=175 Identities=10% Similarity=-0.023 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchh-HHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRY-WTIAIFTTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD----~~~Gr~-~~i~i~~~~ 145 (488)
-+.-.+..+..++.+..+..+++.|+++.+|++...++.+..+..+...+..|+.|+++| |+ ||| +.++++.+.
T Consensus 8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~ 86 (473)
T PRK10429 8 KLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLA 86 (473)
T ss_pred HHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHH
Confidence 334445566667777778888999999999999999999999999999999999999999 55 985 455566666
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++... |+ .+.......+++...+..++.........++.+|+.++.+.
T Consensus 87 ~~i~~~llf~~-------p~---------------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e---- 140 (473)
T PRK10429 87 NSVVLFLLFSA-------HL---------------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE---- 140 (473)
T ss_pred HHHHHHHHHcC-------CC---------------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH----
Confidence 66665554322 10 00011233444444566777777788888999998753331
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISN 273 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-------~~g~~~~f~i~~~~~~i~~ 273 (488)
|.+..++-....++|+.+.+.+...+.+ ..+|+....+.+++.+++.
T Consensus 141 -R~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 141 -REQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 8888887666667776665544433221 1245555555444444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-10 Score=118.32 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-----HHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-----~i~i~~~~ 145 (488)
.|.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.+++|+++||+ |||+ ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 44444444444555566778899999988999999999999999999999999999999997 8752 22211111
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
...+...+.+.. . .+....++..++.+++.+...+...++..+..+ +.
T Consensus 333 ~l~~i~~~~~~~------~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLGR------A--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhcc------c--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 111111111110 0 123333444445555544444445555555543 34
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
+++..++.+.+.++|+.+++.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888988887777888887776654 22345699999998888887777776654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=108.78 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++......++...+.|...+++-.++++..|++....+++...|.++..++.+++|+++|| +.++++.....+..+.
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA 289 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence 47778888888888888999999999999999999999999999999999999999999998 7888888777666666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+.+.+.. .+.....+..++.|+..+........-.++ .-++. ++.
T Consensus 290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~ 335 (394)
T COG2814 290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL 335 (394)
T ss_pred HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence 66555542 234445555555666655444444444444 22344 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
+.+++..+.|+|..+|..++|.+.+++|+....++.++..++++++.+...++
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888888877665544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=114.97 Aligned_cols=180 Identities=17% Similarity=0.077 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHH------
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------ 139 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i------ 139 (488)
.+++.++.+.+..++..+.++.+.+++|.|+.+.+|.+..+++.......++..++.+++|+++||+ ++|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~ 336 (465)
T TIGR00894 258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAAR 336 (465)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHH
Confidence 3445688888888999999999999999999999999999999999999999999999999999987 543211
Q ss_pred --HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCC
Q 011358 140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (488)
Q Consensus 140 --~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (488)
..+......+..++..... . .+....++...+.+.+.++..++......|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 391 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP 391 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence 1111111111111111100 0 122223334444444445444555455556555
Q ss_pred CCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHH
Q 011358 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~---~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
. . ++...++.+...++|+.++|.+.|++.+. .+|..+|++.++..+++.+....
T Consensus 392 ~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 392 R-F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred h-H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3 4 89999999999999999999999998764 34888888887777777655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=115.56 Aligned_cols=166 Identities=8% Similarity=-0.069 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-HHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIY 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i-~i~~~~~ 146 (488)
+.++...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+.. .+..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 346777777788888888999999999976 3467888888888889999999999999999997 876643 3333333
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+ +.... .+....+++..+.++|.....+.......+.+|++.
T Consensus 321 ~~~~~-~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------ 366 (412)
T TIGR02332 321 AAGWL-LASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------ 366 (412)
T ss_pred HHHHH-HHHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------
Confidence 33321 11110 011112222223333333333334444566778777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~ 269 (488)
|++++++.+...++|+.++|.+.|.+.+..| |+++|++.+++.
T Consensus 367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 367 RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999999999988774 999988766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-08 Score=100.73 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHH--HHHHHHHHHHHHh-HHHHHhhhccchhHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSV-LGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~--~~~~~~~~~~~~~-~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
...+....+.+.+.+..+...+|.|++ +.|.+.++.+.. .........+..+ +.++.+||+ ||||..++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 445556667777777666677888886 569999999986 3444555545444 447789986 99998766553221
Q ss_pred H-HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 148 l-g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
. ....+.... +. ......+.....+.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~~------~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG------PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC------cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 1 122222110 00 0112223333344555555555666666666666555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
++...+...++..+|..+|+.+.+++.+..||+..|++.++..++..+..+.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777888999999988899999999999999988776665555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-09 Score=107.43 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+......++.....+...++++.|+.+.+|++..+.+.......++..++.++.|+++||+ |+++.+.++..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 33333333343444445556677888888999999999999999999999999999999997 99999888887777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhc-CCCCCchhhhhHhH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLDR 229 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~-~~~~~~~~~~~r~~ 229 (488)
+++.... .+.....+..++.++|.++..+.......+. .+++. ++.
T Consensus 280 ~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~ 326 (382)
T PRK10091 280 LMLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGA 326 (382)
T ss_pred HHHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHH
Confidence 5543321 1223334444445555444333333333333 33332 343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHh
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~-~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
. ..+...++|..+||.++|++.+. .+|++.+.+.++..++....+...
T Consensus 327 ~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 327 A--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred H--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3 33566789999999999998885 689999988776655555444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.7e-09 Score=107.92 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHH-HHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTT 144 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i-~i~~~ 144 (488)
+..+.-.+..+..++.+..+..+++.|+++.+|++..+++.+.....+...+..+++|+++||. +||||.. .++.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3445555566666777766777888899999999999999999999999999999999999995 4777755 45555
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
...+..+++..... .. . .......+++...+.+++.+...++..++..++..+.+.
T Consensus 88 ~~~~~~~~~~~~~~--~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--- 143 (448)
T PRK09848 88 PLMIFSVLVFWVPT--DW-S------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS--- 143 (448)
T ss_pred HHHHHHHHHHhCcC--CC-C------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH---
Confidence 44443333321100 00 0 011233344445566777777777777877776654331
Q ss_pred hhHhHHHHHHHHH-----HHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLS-----VTVGAIVAFTLVVY 251 (488)
Q Consensus 225 ~~r~~~~~~~~~~-----~~iG~~i~~~i~~~ 251 (488)
|....++-.++ .+++..++|.+.+.
T Consensus 144 --r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 --RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56655554332 34555666665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-09 Score=109.06 Aligned_cols=148 Identities=15% Similarity=0.042 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 011358 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (488)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~ 163 (488)
..+++..+++.|+.+ .|.+....+.......++..++.+++|+++||+ |||+.+..+.++..++.+++....
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------ 317 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------ 317 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence 344567788988875 589988888888888889999999999999997 999998888776655544433220
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 011358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 243 (488)
. .....+.+..+..+++..+..+..+.++.|.+|++. |++++++.+...++|+.
T Consensus 318 -~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 318 -Q-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred -c-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 0 111112122222223333334556778899999887 99999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH
Q 011358 244 VAFTLVVYIQMEHGWGSAFGAL 265 (488)
Q Consensus 244 i~~~i~~~i~~~~g~~~~f~i~ 265 (488)
++|.+.|++.+..|+....++.
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~~ 393 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTFI 393 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999988876544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=107.16 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
++...+..++..+.+++.. .+.+.|.++.+|.+..+.+.......++..++.++.|+++||+ ||++.+..+.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4455555555556665565 6778888777999999999999999999999999999999997 9999888876666665
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+++.... .+.+.+++..++.|++.+...+...++..|.+|++. |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55444320 125566777788899999888889999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g 257 (488)
..++++...++|..++|.+.|++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=105.28 Aligned_cols=170 Identities=11% Similarity=-0.096 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
++...+..++..+..+......|.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++..+..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444444444555556666778888888999998888877777778889999999999997 99999988887777777
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++.+.... .+ .+...++++.++.++|.+...+......... ++++ +++.
T Consensus 296 ~~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI----SS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV 345 (406)
T ss_pred HHHHHHHHc----cc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence 666553210 00 2345566777788888887666655554333 3344 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i 271 (488)
.+.+++...+|..+|+.+.+++.+..++....+..+++.++
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 99999999999999999999987777765544444433333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-09 Score=108.47 Aligned_cols=175 Identities=9% Similarity=-0.014 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~~~i~i~~~~ 145 (488)
...+....+.+.+. +.+...++.++.+++|++.++.+...+...+...+-++ .|+++|++ + ||+.+.++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 44555577788887 67777788899999999999998888877777777665 99999998 6 67767776655
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
.. ...+..++. ++ .......+.+++.+++.+......-++..|..+ ++++
T Consensus 105 ~~-~~~~~~l~~------~~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--- 154 (468)
T TIGR00788 105 GS-AILYGLLPG------KV-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--- 154 (468)
T ss_pred HH-HHHHHhccc------cc-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---
Confidence 42 111122210 00 123334346778899999988999999999998 4422
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
.++...++.|.+.++|..+|+.++|++.+..+|+..|++.++..++..+..++
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 14456667777788999999999999999899999999887776666444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=109.76 Aligned_cols=148 Identities=14% Similarity=0.025 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
+..+...+..++....++++..+++ ++.+++|++..+++.......++..++.+++|+++||+ |||+.+....+. .+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~ 326 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLG-AV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHH-HH
Confidence 3445555555566677777777777 66678899999999999999999999999999999997 988544433332 22
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
...++.... .+....++..++.|++.++..+...++.+|.+|++. |+
T Consensus 327 ~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 373 (398)
T TIGR00895 327 FAVLVGSTL---------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RA 373 (398)
T ss_pred HHHHHHHHh---------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HH
Confidence 222222210 134455666778888888888999999999999887 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYI 252 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i 252 (488)
+.+++++....+|..++|.+.|++
T Consensus 374 ~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 374 TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999876
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-09 Score=109.24 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
....+...++..+.+.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++..+..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44555555666666655556678888878899999999888888888888889999999998 99999998888777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++..... . .+...+.+..++.|++.+...+....+..+.+|++. ++..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 55544210 0 123334445566778888777888888889998877 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
++++++...+|..+|+.+.|.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988765554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-08 Score=101.82 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHH-HHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT 144 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i~-i~~~ 144 (488)
+.-+.-.+..+..++.+..+..++..|+++.+|++...++.+..+.-+.-.+.-|+.|+++||. +||||..+ ++.+
T Consensus 9 ~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 9 KEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 3344445566666777777778899999999999999999999999999999999999999973 58876655 5556
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
.+.++.+++.... ... .......+++...+..++......+..++.+++.++.+.
T Consensus 89 ~~~i~~~llf~~p---~~s-------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e--- 143 (460)
T PRK11462 89 PFGIVCVLAYSTP---DLS-------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ--- 143 (460)
T ss_pred HHHHHHHHHHhCC---CCC-------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH---
Confidence 6666655544321 000 012233344444556777777778888999998765332
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~-------~g~~~~f~i~~~~~~i~~~ 274 (488)
|.+..++.....++|..+++.+...+... .+|.....+.+++..++.+
T Consensus 144 --Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 144 --RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 89999998888888887777665443332 2466555554444444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=104.18 Aligned_cols=165 Identities=7% Similarity=-0.095 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++....+.++.+.++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3555555555555666667777888885 5899988888888877788888889999999997 9999999888877777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+++... .+.+.+++..++.|++.+...+....+..+. ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 6655443 3556677778888888887777777776665 4333 677
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 011358 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (488)
Q Consensus 230 ~~~~~~-~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~ 272 (488)
..++++ ....+|..+||.++|++.+..|+. .|++.+++.+++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 777765 556788899999999999988874 555555444444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-09 Score=108.53 Aligned_cols=161 Identities=16% Similarity=0.049 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|.++..++..++..++++......+.|++..++ +....+.......++..++.++.|+++||+ |||+++.++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 345556666666666666655555556655555 455566666777888889999999999997 999999999887777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCch-hhhhH
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r 227 (488)
+.+++.+.. .+...+++..++.+++.+...+...++++|..+.++-+ ..+.+
T Consensus 300 ~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (437)
T TIGR00792 300 GYLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE 352 (437)
T ss_pred HHHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence 766655431 13445566667788888888888999999987643211 01127
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
+..++++++...+|..+++.+.|++.+..||
T Consensus 353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 353 GLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999876665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=104.64 Aligned_cols=174 Identities=7% Similarity=-0.083 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.+..+...++...+.....++.+.|+.+ .|++.++.+....... ....++.+++|++.||+ |+++.+.++..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4444444455555566666777888865 7999999998877765 45667789999999997 9999988776654333
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC-CCchhhhhHh
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (488)
.+......... . . .....++....+.+++.+...+...+...+..++ +. ++
T Consensus 288 ~~~~~~~~~~~-~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g 339 (390)
T TIGR02718 288 ALLWFAQAAFW-L-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG 339 (390)
T ss_pred HHHHHHHHHcc-c-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence 22222111000 0 0 1222233333444555666556666776676665 55 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~ 274 (488)
+.+++++...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999989999888887766655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-09 Score=107.08 Aligned_cols=170 Identities=12% Similarity=0.076 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
++..++..++....+.....+.+.|+.+.+ +.+....+...+...+...++.+..|++.||+ |||+.+.++.++..
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence 333344444444455455567788887665 44555667777777778888889999999998 99999988888777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.++.... .+...+++..++.+++..........+..+.++++. +
T Consensus 296 l~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 341 (396)
T TIGR00882 296 VRIIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------S 341 (396)
T ss_pred HHHHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------E
Confidence 766654443 244556666777787766555555566777777776 6
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (488)
Q Consensus 228 ~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~ 275 (488)
++..+. ++....+|+.+++.+.|++.+..||+..|.+.+++.++..+.
T Consensus 342 at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 342 ATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred EEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 776665 677899999999999999999899999999877776655544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=106.32 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.+..-++..++.+=+..++.+....|..+++|++..+..++.....+...++.+++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 455555566665666667778888999999999999999999999999999999999999997 9999999999887776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+...+. .....+.+.-++.|+..|+.++..-++.++..|+++ -+.
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 6554443 122335555568899999999999999999999988 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
+|++|++....++.+||...+.+.+.+| -|.++...++..++++++++..
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 9999999999999999999999888665 6777777666677776665443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=111.33 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++..+.+++...++|.|+++.+|++..+++.......++..++.++.|++.||+ |||+.+.++..+..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 345556666677778888888999999999999999999999889999999999999999997 9999998888877777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
..++..... ++ .+...++...++.|+|.+...+.......+.+|++. +++
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 766553211 11 234445566778888888877777777778888777 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQME 255 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~ 255 (488)
+.++++...++|+.+|+.+.+.+.++
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-08 Score=100.68 Aligned_cols=179 Identities=12% Similarity=-0.022 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH--
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY-- 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~-- 146 (488)
+..+...+..+...+++-...++.+.+++++.|++.++.|.+.++..+...+.+++.|.++||+ |.||.++....+.
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3466666666666666656778899999999999999999999999999999999999999997 9666554433222
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++-...... .+.+. .| ++++.++.++..+.......+. .|.+-++.++ .
T Consensus 86 l~~pff~~v~--~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr---~ 135 (412)
T PF01306_consen 86 LFGPFFIYVF--GPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSR---R 135 (412)
T ss_dssp TCHHHHHHTH--HHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHH---H
T ss_pred HHHHHHHHHH--HHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHH---H
Confidence 2222222111 00000 01 2233333333333333222222 2444333221 1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+-=++-.-+...+|.+++..++|++.+ .+-...||+..++.++..++.+..
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHc
Confidence 1222333455677888899999998876 455678888766655554444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=105.11 Aligned_cols=184 Identities=13% Similarity=0.005 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.|.+.+..++..-.|.++..++|.|+++.+. ............+...+..+++|+||||+ |+++++.++.+...++.
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence 6777777777766777788899999987663 33333333445677888999999999998 99999998887666665
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC----------
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS---------- 220 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~---------- 220 (488)
.++.+.. |. ....+...+.++.+...++.|.-.+...-++.+.||++.
T Consensus 331 ~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~ 388 (462)
T PRK15034 331 ALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS 388 (462)
T ss_pred HHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence 4433321 10 001245555555555445555555666667777776410
Q ss_pred -----chhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHh
Q 011358 221 -----KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 221 -----~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
...+++-+...++......+|+++-|.+.|+..+.. ++..+|++..+..+++.++.+..
T Consensus 389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 001113577788888888999999998888776654 48888988888777777665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-09 Score=111.64 Aligned_cols=174 Identities=16% Similarity=0.074 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWT 138 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~laD~~~Gr~~~ 138 (488)
.+.+....++..+.+|++..++|.+++ ..|++..+++. ......++..++.+++++++||+ |||++
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~ 367 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhH
Confidence 333344445556778888888888885 56776432211 12223345556778899999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
+.++..+..++.+++.+..... .....+....+...++..+..+..+.+.+|.+|.
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNHL------------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 9888877666665555431100 0111111111122222333445667788999999
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~----------~g~~~~f~i~~~~~~i~~~~~ 276 (488)
+. |+++.++.+....+|++++|.+.+++.+. .++...|++.+++.+++.+..
T Consensus 424 ~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 424 RY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999998773 344556666666655554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-09 Score=110.12 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|......+..++..+.+++...+++.|+++.+|++..+++.......++..++.+++|++.||+ |||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 3455555666666777788888899999999999999999999999999999999999999998 999988888877777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+.+++..... + .+....++..++.|+|.|...+.......+..|+++ ++
T Consensus 338 ~~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g 386 (495)
T PRK14995 338 SFYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AA 386 (495)
T ss_pred HHHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cc
Confidence 7665544211 0 123345566778899999888888888888888877 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
.+.++++...++|+.+|+.+.|.+.+
T Consensus 387 ~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 387 AAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-08 Score=104.45 Aligned_cols=160 Identities=9% Similarity=-0.053 Sum_probs=110.0
Q ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 011358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (488)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~ 167 (488)
+..+.+.+ .+.+|.+...+.+......+...++.+++|+++||+ |||+.+..+.++..++.++++.... .+
T Consensus 290 ~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~~-- 360 (479)
T PRK10077 290 VLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----TQ-- 360 (479)
T ss_pred HHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----cC--
Confidence 33334444 456788877777666667778889999999999997 9999999999888888777654321 00
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccc-cccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
... .....+.++.+++.+. ..++...+.+|.+|++. |++++++.+...++|..+++
T Consensus 361 ----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~ 417 (479)
T PRK10077 361 ----------------APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVS 417 (479)
T ss_pred ----------------ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHH
Confidence 011 1222333344444433 33677899999999888 99999998888888888876
Q ss_pred HHHH------HHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 247 TLVV------YIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 247 ~i~~------~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+.+ ++.+..+|++.|++.++..+++.++.++.
T Consensus 418 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 418 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 5554 44467788888888776656555554443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-08 Score=105.06 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
-|.+.+..|..++..+|+.. .+-..+.++++-+..+.+++.++......+..++.+.+.||+ |.|.+.+++.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 35555555555555555442 344566788999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
+|.++..++ .+.+.+++.. ++.|+|.|..+......++..|+.+
T Consensus 123 ~g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk------- 167 (509)
T KOG2504|consen 123 LGLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK------- 167 (509)
T ss_pred HHHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------
Confidence 999988876 3566666655 6789999999988888888777643
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
|+.+.++...+..+|..+-|.+..++.+.+|||..+++.+.+.+-.++..+..++
T Consensus 168 R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 168 RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888888888888888888888899999999999999877776655555555555
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=105.41 Aligned_cols=165 Identities=10% Similarity=0.034 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
...+..++.....++...+++.|+ ++.+|++..+++.....+.++..++.+++|++.||+ |||+++..+.++..++.+
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~ 340 (438)
T PRK10133 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 344444555566666777888886 567899999999999999999999999999999997 999998888766655544
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (488)
+..+. + +. ..+.+..+.|+|.+...|+..+...+.++++. +.+.
T Consensus 341 ~~~~~-------~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as 384 (438)
T PRK10133 341 ISAFA-------G---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGS 384 (438)
T ss_pred HHHHc-------C---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccch
Confidence 33322 1 11 22455677899999999999999999887643 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q 011358 232 NFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML 275 (488)
Q Consensus 232 ~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~ 275 (488)
++... ..+|+.++|.+.|++.+..| -+..|+++.++.+.....
T Consensus 385 ~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 385 SFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred hHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 33333 33578888889999988887 678888766655544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-08 Score=100.53 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+...+....++....+.+.|+.+++|++..+.+.......++..++.+++|+++||+ |||+.+.++..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33344444444555666777788888889999999999998888999999999999999997 99999888877777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++...... . ......+++..++.|++.+...+.......|.+| +. +++.
T Consensus 287 ~~~~~~~~~----~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~ 336 (385)
T TIGR00710 287 VLLEITAIL----G-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTA 336 (385)
T ss_pred HHHHHHHHh----c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHH
Confidence 655543210 0 0123344555667788888877888888888776 34 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i 264 (488)
.++++.....++.+.+.+.+.+.+..+|...+..
T Consensus 337 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 337 SALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence 8887776655444444445555555555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-07 Score=89.77 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
|-.+..++++.+-.|-..-++ ..+..-+.+++|.|.+.++..++...+...+..++..+|+.|+ |..+.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 334555555555556665433 4466778899999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+|.++=... +...++.+-++.|.|.+......++++-+-||.+.
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 887654432 45678888899999999999999999999999774
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+..+++|..+.++|+.+++.+...+.++. ||+.+..+-+...++++++++-
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999998888776 7999888777777777766654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=117.58 Aligned_cols=163 Identities=10% Similarity=-0.013 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
++..++..++..+..+.+..+++.|+.+.+|++.. ..+++.....++..++.++.|+++||+ ++++.+.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 44444444444555556777899999999999998 889999999999999999999999997 9998888887776666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+++.+. .+...++++.++.|++.+...+...+++.+..|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6655543 245556677788888888888888999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~-~~g~~~~f~i~~~~ 268 (488)
+++++++..++|..+++.+++.+.. ..++...|++.+.+
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999888877766643 23455555554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.1e-08 Score=100.00 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=100.1
Q ss_pred HHHHHHhHhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 011358 90 VNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (488)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~ 168 (488)
.+.+.++.+++|++..+.+....... ++..++.+++|+++||+ |||+.+.++.++..+..+.+...... +
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~---- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P---- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C----
Confidence 34455677789999998888776544 45788999999999997 99998877776655554333221110 0
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHH----HHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 011358 169 CDRISQLLGSCEPAKSWQMLYLYTVLY----ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (488)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (488)
.+.+.++++.+ ..+++.+...+....++.+.+|.++ + +++....++|..+
T Consensus 301 ----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~ 354 (402)
T PRK11902 301 ----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVY 354 (402)
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHH
Confidence 12333333332 3445555555556666666655332 3 4444445667766
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 245 ~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+..++|++.+..||+..|.+.+++.++++++...
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6668999999999999999888777776655433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-07 Score=90.65 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=123.0
Q ss_pred HHHHHHHH-HhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 011358 87 GLSVNMVT-FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (488)
Q Consensus 87 ~~~~~l~~-yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~ 165 (488)
.+..++.. -+....|.+..++..+......+..++....|.++|++ |||+.+.+..+...+..++-..+
T Consensus 94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s--------- 163 (528)
T KOG0253|consen 94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS--------- 163 (528)
T ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---------
Confidence 44444433 34456788888889999999999999999999999998 99999888776555444433322
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Q 011358 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (488)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 245 (488)
+|...+.+.+.+.++|.|+ .|...++-.+..|..+ |..-.-.. ....+|..+.
T Consensus 164 -------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 164 -------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred -------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHH
Confidence 4677889999999999999 8888888899888776 55544333 4455677777
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHH
Q 011358 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF 304 (488)
Q Consensus 246 ~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~ 304 (488)
..+.=.+..+.||||-.....+-..+..+...+....-|..-..|++.+.+...-+.|.
T Consensus 217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiAr 275 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIAR 275 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHH
Confidence 66664555677999876666555554444444443322333345666555444444443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=104.17 Aligned_cols=172 Identities=12% Similarity=-0.006 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
++...+..++..+.+.....+.+.|+... .+.+....+..............++.|++.||+ |+|+.+.++..+..+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI 286 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence 44444445555555544555667776543 344555566666666666666778889999997 999998888877777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+.+.+.+.. .+.+.+.++..+.++|.+...+...+++.+..|++. ++
T Consensus 287 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~ 333 (395)
T PRK10054 287 GLVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA 333 (395)
T ss_pred HHHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence 776665431 244555666778888888777888888999998877 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
+.++... ...+|..+||.++|++.+..|....|++.+++..++.+..+
T Consensus 334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 8877654 56689999999999999999988888876665555544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=104.54 Aligned_cols=170 Identities=10% Similarity=0.040 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011358 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (488)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll 153 (488)
++...++..+....+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+++ ++++.+..+.+++.++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33334444444445566688888899999999999999999999999999999999987 99888888888777777666
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHH
Q 011358 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (488)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (488)
++. .+.+...++.++.|++.........+.+....|++. ||+.+++
T Consensus 302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 654 356667777788888888877788888888888888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 234 ~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
+......+..+|.++.|++.+..|-+..+.+++++.+++.++...
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888777766655555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-08 Score=98.47 Aligned_cols=164 Identities=10% Similarity=-0.007 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
++......++.....++...+.+.++.+++|++..+.+.....+.++..++.++.|++.||. +|+ .+..+.++..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 44444444444455556666664545567899999999988888889999999999999995 544 3333333333332
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+++.... .+.+.+.+..++.|++.+...+...+++.+..|++ ++..
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence 2222221 23455666777888888888888888888877633 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~ 270 (488)
.+++....++|..+|+.++|++.+..|++..++.++++.+
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 5666677789999999999999998898877777655443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-08 Score=98.37 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..++....++++..++|.|+++ .|++..+++...+...++..++.++.|+++||+-+||+.+.++..+..++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 4555555556667777888899999975 799999999999999999999999999999997345666667766676766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+.+.... .+.. . +..++.|++.|...+...+...+..++++ .++..
T Consensus 278 ~~~~~~~---------------------------~~~~-~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~ 323 (355)
T TIGR00896 278 CGLLFAP---------------------------MHGL-W-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAAL 323 (355)
T ss_pred HHHHHhh---------------------------hhHH-H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHH
Confidence 6555431 0111 1 13456788888888777777766554422 16788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g 257 (488)
+++.+...++|..++|.+.|++.+..|
T Consensus 324 ~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 324 SAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888999999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=101.47 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=105.7
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~ 166 (488)
....++|.|+++..+ +..+.+...+...++..++....+++.|+.++.++.+..+..+..++.+++...
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------- 294 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------- 294 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence 345667888876655 566777766666555554444455666554476666777776666666655543
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
.+...+.+...+.++|.+...+...++..+..|++. |++.+++++...++|..+||
T Consensus 295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~ 350 (400)
T PRK11646 295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY 350 (400)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence 234445555566777777777888899999999888 99999999999999999999
Q ss_pred HHHHHHhhcc---c-hHHHHHHHHHHHHHHHHH
Q 011358 247 TLVVYIQMEH---G-WGSAFGALAIAMGISNML 275 (488)
Q Consensus 247 ~i~~~i~~~~---g-~~~~f~i~~~~~~i~~~~ 275 (488)
.+.|++.+.. + ....|++..+..+++.+.
T Consensus 351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 351 IGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred cchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999998764 2 244555544444444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-08 Score=99.05 Aligned_cols=167 Identities=10% Similarity=-0.035 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh---HHHHH-HHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~---~~i~i-~~~ 144 (488)
+.++.+.+..++....+|++.+|+|.|+.+ .|++.. ++.......... .+..++++||. .|+ +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g---~~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAG---LIGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHH---HHHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 347888888899999999999999999964 678764 444444444333 34458889886 543 33222 222
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++...++.. .+....++...+.+++.....+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222211 112223334445566666666778899999999998
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
|+++.++.+...++|+.++|.+.+.+.. +....|.+.++..+++.+..+
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887763 666677766666666655543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-09 Score=106.01 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 011358 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (488)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (488)
++....+.+..+..++..+|+++.||++|++ |||+++...++++++++++++++. |.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 5566778888889999999999999999997 999999999999999988655531 222
Q ss_pred cchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHH----HHHHHHHHHHHHHHHHHHhhc--
Q 011358 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF----YLSVTVGAIVAFTLVVYIQME-- 255 (488)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~----~~~~~iG~~i~~~i~~~i~~~-- 255 (488)
+...-+..+...|++.|+|.|+=+|...+..+|..-.+. ||...+.. .++...|+.++.++.+-....
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 233356778889999999999999999999999887777 77776653 445555555555554433211
Q ss_pred ---------cchHHHHHHHHHHH
Q 011358 256 ---------HGWGSAFGALAIAM 269 (488)
Q Consensus 256 ---------~g~~~~f~i~~~~~ 269 (488)
.=||..|.+.++-.
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa 235 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPA 235 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHH
Confidence 13888777655443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-08 Score=101.96 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.+....+..++...+++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 355566666666666666666677788888888766655544444566778899999999997 9999999999888887
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh-hhhHh
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (488)
.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++-++ .+..+
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7666543 11 245556667778899999999999999999887543111 01258
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
..++.+++...+|..+++.+.+++.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999887655444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-07 Score=92.90 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHH-HHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFT 143 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i~-i~~ 143 (488)
++.-+.-.+..+..++.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.+.||. +||+|..+ .+.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 34455566677777888888889999999999999999999999999999999999999999985 58766554 555
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 144 ~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
+...+...++..+. + .+. +......++...+.+++.........++.+++-++.+ |
T Consensus 91 ip~~i~~~l~F~~p-------~--~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E 146 (467)
T COG2211 91 IPFAIVAVLLFITP-------D--FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E 146 (467)
T ss_pred HHHHHHHHHHHcCC-------C--ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H
Confidence 66666666665542 1 000 1244455556677888888888888899998875433 2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHH
Q 011358 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-------~~g~~~~f~i~~~~~~i~~~ 274 (488)
|.+..++-....++|..+...+.+.+.. ..||+..-++.+++..++++
T Consensus 147 ---R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 147 ---RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 8999999888888887777666655543 23565544444444443333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-08 Score=99.32 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=139.7
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hHHH
Q 011358 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI 139 (488)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~i 139 (488)
...+.+||.+++..+..+.....+..+...+-.|+++ +.+-+.+..|+++++..++..++.++.|+.+.|. |. |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3456789999999999999888887776667778764 3566777889999999999999999999999997 75 7788
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCC
Q 011358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (488)
Q Consensus 140 ~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (488)
+.+.++.++|.++....... ++ ....++.++|++.|+|.|. .+..-++++|--..+
T Consensus 106 i~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVE 161 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCcc
Confidence 88888999998887333221 21 2567888999999999775 467788999977666
Q ss_pred CchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh----hc---------cchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~----~~---------~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
+ |.++++....+..+|..+||.+...+. +. .-|..+-|+.++..++.++.+.+..++
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 6 777777766655666666665543331 11 125566677777777777766655443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-08 Score=115.06 Aligned_cols=184 Identities=5% Similarity=-0.186 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++..+.++++.+++|.|+.+.+|.+...++.+.+.+.++..++.++.|+++|+. ++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 466666666666677777888999999999999999999999999999999999999999987 6666555555544444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+.+.+..... ..+....+ .-.+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. +|+
T Consensus 305 ~~~l~~~~~~~-~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSSV-PAEPAQLK------SILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccccc-cccccccc------chhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 43333210000 00000000 000000 00134556677778899999888889999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~-~~g~~~~f~i~~~~ 268 (488)
.++.++...++|..+++++.+.+.+ ..++...|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999998864 44666666554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=104.29 Aligned_cols=131 Identities=14% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 011358 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (488)
Q Consensus 113 ~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (488)
...+....+.+++++++||+ |||+.+.++.++..++.+++.+.. + ......++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~-------~-------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP-------V-------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC-------C-------------------CchHHHHH
Confidence 34456677888999999997 999999988887777766555431 1 11223333
Q ss_pred HHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 011358 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (488)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~ 272 (488)
..++.+++.++..+....+.+|.+|++. |++++++.+....+|+.++|.+.+ +. ..++...+++.+++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHH
Confidence 4445556666666778889999999988 999999999999999999999988 43 345666676666665555
Q ss_pred HHHHHH
Q 011358 273 NMLFFI 278 (488)
Q Consensus 273 ~~~~~~ 278 (488)
.++.++
T Consensus 488 ~~~~~~ 493 (505)
T TIGR00898 488 GILTLF 493 (505)
T ss_pred HHHHHc
Confidence 544443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=102.68 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-------hhHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTIAI 141 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~G-------r~~~i~i 141 (488)
+.+|.+.+..++..++++.+..++|.|+.+.+|++..+.|...++..+...+..+++|++||+... +||.+..
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 569999999999999999999999999999999999999999999999999999999999999733 1222221
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (488)
Q Consensus 142 ~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (488)
. .....+..++.+... + |. . .......+.++..+.|+..++..-+ ..|.. ++.
T Consensus 338 i-~~~~~ai~l~~l~~~-----~----~~----------~-~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~a-pq~- 390 (466)
T KOG2532|consen 338 I-AFGGPAVFLLVLAFT-----S----DE----------H-RLLAVILLTIAIGLSGFNISGFYKN----HQDIA-PQH- 390 (466)
T ss_pred H-HHHHHHHHHHeeeec-----C----CC----------c-chHHHHHHHHHHHHcccchhhhHhh----hhhcc-chH-
Confidence 1 111122222222110 1 10 0 0011222222222233333332222 12222 233
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHh
Q 011358 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~---~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
-+..+++.+...++.++++|.+.+.+..+ ..|+..|++.+++.+++.+.+.+.
T Consensus 391 -----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 -----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 68899999999999999999999998742 369999999999988888776554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-07 Score=95.18 Aligned_cols=161 Identities=6% Similarity=-0.062 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 011358 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (488)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~ 163 (488)
........++.|+++.+|.+..+.+.......++..++.++.+++.|+. ++++.+..+..+ .+..+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------- 290 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH-------
Confidence 3344555567788888999999999999999999999999999999997 888877776432 2222222221
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 011358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ 243 (488)
.+.+...+..++.|++.+...++..+.+.+..|++. ++++.++..+...++|..
T Consensus 291 ---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHH
Confidence 234445566667888888877777787776544321 168899999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 244 i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
++..+.+.+ +..|-++.+++.+.+.++++.+.+..+
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999888865 567777777776666555555544443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=96.44 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=122.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
..++.....+...++..+............+-..-|++..++.++.........++.+++.++-||+ |||+.++++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 3344566666666665555322222334444456799999999999999999999999999999998 999999999998
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHH--HHHHHHHHHHHhc-cccccchhhhhhhcCCCCCch
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML--YLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKD 222 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~ 222 (488)
+.+..+++.+........ ..+. ..+++.++..++. -+..|..+-+.+|++|+..
T Consensus 345 ~~~~~~~~~~~~~l~~~~---------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~-- 401 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNSF---------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA-- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--
Confidence 888888777664321100 0111 1223333322222 2345777889999999988
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccc
Q 011358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (488)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (488)
|..++++.....-+..++-......+.+..|- ..|.+.++...+..+..+...|+.+
T Consensus 402 ----R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 402 ----RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 99888887666666666555555566666664 4455555555555555544445443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.6e-08 Score=93.75 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCC-----------------ChHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHK-----------------SFADSSNAVNNFLGISQASSVLGGFLAD 130 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~-----------------s~~~a~~~~~~~~~~~~~~~~~~G~laD 130 (488)
..+.+..+.|..++.|||+.-......+.. .+. +...-..=........+-|.++.|++-|
T Consensus 327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive 406 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE 406 (528)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence 456666778888999999765333332221 111 1111112233345566778899999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhh
Q 011358 131 AYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS 210 (488)
Q Consensus 131 ~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 210 (488)
|+ |||+++..+.+++.+..+++...-. ++ ....+++.+|+++. +...+.+.
T Consensus 407 rl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafis----g~fqvaYv 457 (528)
T KOG0253|consen 407 RL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFIS----GAFQVAYV 457 (528)
T ss_pred Hh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHHh----chheEEEE
Confidence 96 9999999999988887777665411 00 22344555665554 34466778
Q ss_pred hhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011358 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (488)
Q Consensus 211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~ 249 (488)
|..|.||... |+++.+.-.....+|+++.|+++
T Consensus 458 YtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 458 YTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 8899999998 99999998889999999999988
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-07 Score=96.46 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|....+++..++..++.....+..+.|.+..+|.+ ...+.......+...++.++.++++||+ |+|+++..+.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 34666667777777777667777777888778877 4556666778888999999999999998 999999999999998
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh-hhhH
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL 227 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r 227 (488)
+.+++.+... .+.+.+++..++.|++.+.......++.+|..+.++-++ ++..
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 8887776521 267778888889999999999999999999988543221 1125
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g 257 (488)
+..++.+.+...+|..+++.+.+.+.+..|
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 888888999999999999999988765443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.7e-07 Score=88.60 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
..|.+.+-.-..++.+|.+..|+|.++. +.|+|..+++..++...+......+.+-++++|.-.+|+.......++.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4677777777889999999999999997 469999999999999999999999999999998767788888888888888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+.+.+. |. +...+. .++.|+|.|+..+....++.+-.++.+ + -++
T Consensus 288 ~~G~~~~-------P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAA 333 (395)
T ss_pred HHHHHHh-------hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHH
Confidence 8877665 21 222222 478999999999999999988765433 1 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGIS 272 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~-g~~~~f~i~~~~~~i~ 272 (488)
..++.+-...+=+.+||.+.|++-|.. +|....+..+.+.++.
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m 377 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM 377 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence 666666777777889999999998866 4887666544443333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-08 Score=97.85 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
+......++..+.++....+++.|+.+.+|++ ..+.+.......++..++.++.|+++||+ |+++...+......++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 34444555555677778889999999999999 78889889999999999999999999997 98888877777666666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+.+.+... ..+....++..++.|++.+...+...++..+.+|++. +++.
T Consensus 288 ~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 336 (352)
T PF07690_consen 288 LGLLLLPF-------------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTA 336 (352)
T ss_dssp HHHCCSHH-------------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHH
T ss_pred HHHHHHHH-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 55554321 0134556667778899999889999999999999888 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAF 246 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~ 246 (488)
.++++...++|+.+||
T Consensus 337 ~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 337 FGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.2e-07 Score=91.40 Aligned_cols=150 Identities=12% Similarity=0.003 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 011358 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (488)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~ 159 (488)
+....++.+..+.+.|+. ++|++..+.+........+..++.++++++.||+ |+++.+....++..++.+.+.+....
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566677787775 5799999888877777788888999999999997 99987766655544444333222110
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHH
Q 011358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (488)
.. .+...+.++..+.+++.+...+...+...+..|+ . ++++.++++....
T Consensus 292 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~ 341 (401)
T PRK11043 292 ----SH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQL 341 (401)
T ss_pred ----cc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHH
Confidence 00 1333444555667888888778777777777653 4 7999999888888
Q ss_pred HHHHHHHHHHHHHhhccchHHH
Q 011358 240 VGAIVAFTLVVYIQMEHGWGSA 261 (488)
Q Consensus 240 iG~~i~~~i~~~i~~~~g~~~~ 261 (488)
.++.+++.+.|.+.+.......
T Consensus 342 ~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 342 GLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHccCCChhHHH
Confidence 8888888888888765444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-06 Score=94.01 Aligned_cols=322 Identities=11% Similarity=-0.050 Sum_probs=226.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCC
Q 011358 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (488)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (488)
.+...........++....++..+.....+|-.-|+...+......++++.+...+.+....
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~------------------ 76 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI------------------ 76 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC------------------
Confidence 34444556778888999999999999999999877778888877777777777766543100
Q ss_pred CCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-h
Q 011358 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (488)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~ 258 (488)
+.........++.+.++++.++..++-+.+.+++++..+ ...+.+..++|++..+.+.+. .+++..+..... +
T Consensus 77 --~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~ 150 (654)
T TIGR00926 77 --PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGD 150 (654)
T ss_pred --cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 011123345567777899999999999999999998765 244567999999999887765 455556654433 3
Q ss_pred HH------HH-HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhhccccccccccccccCCCcccccC
Q 011358 259 GS------AF-GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 331 (488)
Q Consensus 259 ~~------~f-~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (488)
.. .| +..++.+++.++.++.+...++..++.+.+-..+.++.......++. +.
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------~~-------------- 210 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------RF-------------- 210 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------hh--------------
Confidence 21 23 35555666667777777666666666555544555555444332210 00
Q ss_pred CcccccCCchhHHHHHHhhhcccccCCCCcccc--cchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCc
Q 011358 332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409 (488)
Q Consensus 332 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~ 409 (488)
.+. +.. ....|..+ ....+++++.+.+++.++...+.+++.+.++......|...+++.
T Consensus 211 ----~~~------~~~---------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 ----STR------SEH---------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ----ccC------Ccc---------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 000 000 00123222 233456789999999999999999999999988999998889876
Q ss_pred cCCcccCCCcccchhhHHHHHHHHhhhhhhhhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011358 410 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWADTSTGLSRSMAMTM 487 (488)
Q Consensus 410 ~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~e~~~~~~~~~~ 487 (488)
.+.+...+...+.++.+-.++++++...+..+++++..+ ..++++++.-+.++++++.+.+++++..+.++-+++
T Consensus 272 ~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~ 346 (654)
T TIGR00926 272 DGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTL 346 (654)
T ss_pred cCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554555666788999999999999999888899999743 446788999999999999999999999988876654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=94.68 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
.++.+.+..++..+++++..++++.|+.+ +|++..+.+.+..... +...++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35666666666778888888999999987 8999999888777655 56778999999999998 999998888877666
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+..+..+...... .. + -...+.+.+..+.++.+++.+...+...++..+.+|++. |+
T Consensus 288 ~~~~~~~~~~~~~--~~--------------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNGH--HD--------------G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcCc--cc--------------c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 6554443211000 00 0 000133556666777889999999999999999999999 99
Q ss_pred HHHHHHHHHHH
Q 011358 229 RFFNFFYLSVT 239 (488)
Q Consensus 229 ~~~~~~~~~~~ 239 (488)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999776654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-08 Score=101.35 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~i~i~~~~~ 146 (488)
+..+.+.+...+..++++.....++.|.. ..+++..+++..+++..+...++.++.|+++|+. . ++....++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 45777777777778888878888888887 7899999999999999999999999999999986 5 333444555555
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+.+++. .+...+...-++.|++.|...+.....+.|..+.+.
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 5555444443 355667777778899999888888889999999888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
...++++..+...++.++||.+.|++.+.++ |...|+.+.++.+++.+.++...
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 8999999999999999999999999988877 99999999988888887666544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=89.52 Aligned_cols=148 Identities=10% Similarity=-0.092 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..++.....+.+..+.+.++.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 33333444444445555666677788888999999999999999999999999999999997 99999988876544433
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+.+...... + .+.....++..+.+.+.+...++......|..| +. +++.
T Consensus 275 ~~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~ 323 (377)
T PRK11102 275 IWLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTA 323 (377)
T ss_pred HHHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHH
Confidence 322221100 0 123333344444444444445555566666665 44 6777
Q ss_pred HHHHHHH-HHHHHHHHHHHHH
Q 011358 231 FNFFYLS-VTVGAIVAFTLVV 250 (488)
Q Consensus 231 ~~~~~~~-~~iG~~i~~~i~~ 250 (488)
.+.++.. ..+|+.+++.+.+
T Consensus 324 ~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 324 SSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 7775443 4566777666543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-07 Score=93.50 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|.+..+++..++..+..+...+..+.|++..++ +....+.......+...++.++.++++||+ |+|+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456666666666666666555555544443333 444555555556677888889999999997 999999888877666
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCch-hhhhH
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r 227 (488)
+.+.+...... ++ .+.+.+++..++.+++.+...+...++++|..+.++-+ .++..
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 65554332110 11 24455666667788888888888899999997643211 00114
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
+..+++..+...+|..+++.+.|++.+..||
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6688889999999999999999988765544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=89.37 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=57.5
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~ 156 (488)
.+..+.+.++.+++|++..+.+.......++..++.++.|++.||+ |||+.+.++..+..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567788888999999988888888889999999999999997 99999998888777777666654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-06 Score=83.93 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=107.4
Q ss_pred hHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 011358 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (488)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~ 175 (488)
+-+++|++..+.+.+.....+...+...+.|.++||+ |||+..++..+++.+..+..-.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------- 118 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3367899999999988888889999999999999998 9999999999888887754322
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC-chhhhhHhHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 011358 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~-~~~~~~r~~~~~~~~-~~~~iG~~i~~~i~~~i~ 253 (488)
.+...++++|++.|++.+....+.-+........+. +++ ..+..++... +...+-++.+.+++-++.
T Consensus 119 ---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~ 187 (354)
T PF05631_consen 119 ---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLA 187 (354)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 367889999999999999888777665544332222 211 1344444322 223333444444555555
Q ss_pred hccch--HHHHHHHHHHHHHHHHHHHHhccc
Q 011358 254 MEHGW--GSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 254 ~~~g~--~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
+..+. ..+|..+.++.+++.++.....++
T Consensus 188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 55544 678888888877777766555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-07 Score=92.03 Aligned_cols=164 Identities=9% Similarity=-0.044 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh-cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.+...+..++......+..++++.|+.+. .+.+...++.....+..+..++.+++|+++||+ ++|+.+.++..+..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33444445554444456667888888643 244555556666667788899999999999997 9999888887776666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.++.... .+.. .....++.+++.+.+.|...+...+..+++. . +
T Consensus 313 ~ll~~~~----------------------------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~ 356 (410)
T TIGR00885 313 CLGSIFA----------------------------GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-Y 356 (410)
T ss_pred HHHHHHc----------------------------CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-h
Confidence 5555543 1112 2455667788888888999999999988665 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS 272 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~------g~~~~f~i~~~~~~i~ 272 (488)
+.+...++. +|+.+.|.+.|++.|.. +.+..|+++.++.+..
T Consensus 357 ~s~~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 357 GAAGLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred hHHHHHHHH-hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 222233333 99999999999999954 4788888877765543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=90.79 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+.+++..++...+.. +...+..|..+..--+....+.......+...++.+++++++||+ |+|+.+.++.++..++.
T Consensus 231 ~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 3344444444334432 223334444333222233334444455667778888999999997 99999988776555433
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh-hhhHhH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR 229 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~ 229 (488)
+.+.+. ++ .+...+++..++.|++.+...+..+++++|..+.++.++ +...+.
T Consensus 309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 322221 11 245566777778899999999999999999987433211 112466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
.++.+.++..+|..+|+.++|++.+..||
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78889999999999999999988776655
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=91.51 Aligned_cols=139 Identities=10% Similarity=-0.008 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..++.....+++..+++.|+++.+|++..+++.......+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 44455555555556677888899999999999999999888888888999999999999997 99888877766655555
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
.++.+... + ..+....++..++.+++.|...+...++.++.+++ + +++.
T Consensus 306 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAV 354 (366)
T ss_pred HHHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccH
Confidence 55443211 0 00344444555555666666667777888888873 4 7999
Q ss_pred HHHHHHHHHHH
Q 011358 231 FNFFYLSVTVG 241 (488)
Q Consensus 231 ~~~~~~~~~iG 241 (488)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877776665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.8e-06 Score=83.95 Aligned_cols=178 Identities=8% Similarity=0.062 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC---ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
|..|...+........++......+.|.+..++- ++...+...+.-.+.-.+.-.+..++-+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 4577766666666667777777788888765542 334455666666777788888999999998 999999999998
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
+.+=.++++++ .+.+.+.+...+.++-.+.......-++++.+|++.
T Consensus 299 ~~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl----- 345 (412)
T PF01306_consen 299 MAIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL----- 345 (412)
T ss_dssp HHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG-----
T ss_pred HHHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH-----
Confidence 88888877775 367778888899999988888889999999999887
Q ss_pred hHhHHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 226 ~r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
..+...+ ++.+..+|..+.+.++|++.|+.|++..|++.+.+.+...++-.+..+
T Consensus 346 -sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 346 -SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp -HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 7788777 567889999999999999999999999998877666655555444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.8e-06 Score=83.16 Aligned_cols=140 Identities=11% Similarity=-0.066 Sum_probs=95.7
Q ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 011358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (488)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~ 167 (488)
+....+.|+.+.+|++..+.+........+..++.++.+++.||+ |++.. .+.....++.+.+...... ..
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~-- 296 (394)
T PRK11652 226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPGWF----GV-- 296 (394)
T ss_pred HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHh----cc--
Confidence 344556788888999998888887777777888888888888887 73332 2222222222222211100 00
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~ 247 (488)
.+.+.+.++.++.++|.+...+...++..|.+|+ . +++..++.+...++|+.+++.
T Consensus 297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHH
Confidence 1344566667788888888888888888888873 4 688888888888999999999
Q ss_pred HHHHHhhccchHH
Q 011358 248 LVVYIQMEHGWGS 260 (488)
Q Consensus 248 i~~~i~~~~g~~~ 260 (488)
+.+++.....+..
T Consensus 353 ~~~~~~~~~~~~~ 365 (394)
T PRK11652 353 LSAMLPQTGQFSL 365 (394)
T ss_pred HHHHccCCchHHH
Confidence 9998866544443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-06 Score=89.56 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
.++.+..+...+.. ++.....+-+.++|+++.++.+++.+.+-++..+...+..+.+-|. =|-|.+-++.+++.+|.+
T Consensus 100 ~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHH
Confidence 33444444444444 7777788888999999999999999999999999999999999986 677888899999999999
Q ss_pred HHHHhhhccc-cC--------CCC-------Ccccc-ccc----ccCCCC--Ccch-hhHHHHHHHHHHHHHhccccccc
Q 011358 152 GITLCATMKV-FM--------PNQ-------DNCDR-ISQ----LLGSCE--PAKS-WQMLYLYTVLYITGFGAAGIRPC 207 (488)
Q Consensus 152 ll~~~~~~~~-~~--------~~~-------~~~~~-~~~----~~~~~~--~~~~-~~~~~~~~~~~l~g~g~g~~~~~ 207 (488)
++++.-+... .. ..+ ..|.+ ..+ .++.|. ..++ .-+.+++++.++.|+|...+++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 9887522111 00 000 00000 001 011121 1112 23447788889999999999999
Q ss_pred hhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------cc-hHHHHHHHHHH
Q 011358 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------HG-WGSAFGALAIA 268 (488)
Q Consensus 208 ~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~------------------~g-~~~~f~i~~~~ 268 (488)
-.+++=|-...+. ....+++.+....+|.++|.+++++...- .| |+.+|++++.+
T Consensus 258 GisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 258 GISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 8999888877766 78888999999999999999998876421 23 88999999888
Q ss_pred HHHHHHHHHHhccc
Q 011358 269 MGISNMLFFIGTPL 282 (488)
Q Consensus 269 ~~i~~~~~~~~~~~ 282 (488)
.+++.+.++++-+.
T Consensus 332 ~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKE 345 (735)
T ss_pred HHHHHHHHHhCccc
Confidence 88887777765444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-05 Score=82.61 Aligned_cols=179 Identities=9% Similarity=0.012 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
+...++..++.....-...++...|+++.-|.+....+...+...+.-.+.-.+.+++-.|+ |-++++.++.+.+++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444444455555555667788898765557777777666666677778888889999997 99999999998887776
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
.+.+.... |. ........++..+.|+..+........++.+..|++. |.++
T Consensus 288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~ 338 (400)
T PF03825_consen 288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA 338 (400)
T ss_pred HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence 66665411 00 0112223344457899889888999999999999998 9999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHHHHHHHh
Q 011358 231 FNFFYL-SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 231 ~~~~~~-~~~iG~~i~~~i~~~i~~~~g~~------~~f~i~~~~~~i~~~~~~~~ 279 (488)
-+++.. ...+|..+|..++|++.+.+|-+ ..+.+++++.++..+++.+.
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999776 56799999999999999876533 44555555555555555444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-08 Score=108.32 Aligned_cols=203 Identities=16% Similarity=0.124 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011358 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (488)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~l 152 (488)
.+++..+.+ ....++.....+-+.++|+++.++++++.+.+-++..+..++..++.+|. -|-|.+-++.+++.+|.++
T Consensus 7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence 344444555 66667777777788999999999999999999999999999999999985 6777888899999999998
Q ss_pred HHHhhhccc-cCCC------------CCccc--cccc---ccCCC----CCcchhhHHHHHHHHHHHHHhccccccchhh
Q 011358 153 ITLCATMKV-FMPN------------QDNCD--RISQ---LLGSC----EPAKSWQMLYLYTVLYITGFGAAGIRPCVSS 210 (488)
Q Consensus 153 l~~~~~~~~-~~~~------------~~~~~--~~~~---~~~~~----~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 210 (488)
+++.-+... +.+. .+.|. ..++ ..+.| +.........++++.++.|+|....++...+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 887643221 0000 01110 0000 00011 1122223567888899999999999999999
Q ss_pred hhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------cc-hHHHHHHHHHH
Q 011358 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIA 268 (488)
Q Consensus 211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~---------------------~g-~~~~f~i~~~~ 268 (488)
|+=|-.+++. -...+++++....+|.++|.++++...+. .| |+.+|.+.++.
T Consensus 165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~ 238 (539)
T PF03137_consen 165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL 238 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999888877 67888899999999999998888755311 23 88888888777
Q ss_pred HHHHHHHHHHhcccc
Q 011358 269 MGISNMLFFIGTPLY 283 (488)
Q Consensus 269 ~~i~~~~~~~~~~~~ 283 (488)
.++..+.++.+.|++
T Consensus 239 ~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 239 LFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------
T ss_pred HHHHHHHHHcCCccC
Confidence 776666665554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-05 Score=80.26 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=114.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 011358 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (488)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~ 140 (488)
.+.-++||-.++...+..+...+.+ .-.+....|..+.+| +...+.+...+|...+....+.+-|+.|++ |-|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qW-I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQW-IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchh-eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 3455666766666666666654444 233345667777788 666777888889999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 011358 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (488)
++.++..+|..+=.++.. +.. ++ ..-....+++..+.+..+-.+...-.-.-+-+|++++
T Consensus 114 lgt~ln~iGa~Ir~iss~-p~v-~~------------------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSL-PFV-PP------------------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred HHHHHHHHHHHHhhhccC-ccc-cc------------------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence 999999999887766532 100 01 0111366677777777766655554455566889888
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
|.++..+-.++..+|..++.++...+..
T Consensus 174 ------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 174 ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred ------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 8888888777777777777666655543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=87.43 Aligned_cols=159 Identities=14% Similarity=0.037 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
+....++..++...++....+.++.|.+..+|.+...+.........+..++.++..+|++++ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 355555566666666666666677788878888888888888778888888899999999997 9999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh-Hh
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LD 228 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-r~ 228 (488)
.+++.+.. . .+..++++...+.++|.+...+..+++++|..+-++-++-.. -|
T Consensus 316 ~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 98888762 1 367788888889999999999999999999986544222111 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQME 255 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~ 255 (488)
..++.+.+..=+|.+++..+.|++...
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777888777777776543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00013 Score=75.29 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011358 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (488)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~ 155 (488)
...+...+.+-....+++.|+.+ .|+|..+.|.+.+...+...+++++.|+++||...++|.+.+..++..+...+...
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455678889875 67999999999999999999999999999999855677776665554443333322
Q ss_pred hhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
. .+.+.+++..++..+......|...++.-+...+
T Consensus 88 ~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 88 S----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred h----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 2 2344455555666776666666666666665543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=77.13 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
||..+.....++.+.. +.|.+.. ....+.+.+|+|.++...+...-.++.+++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4555555555554433 3344443 455778899999999999988888888875 7889999997 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.+|+.++.+...... + ....+.+.+..++.+.+.+.............||+ +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999998887643111 0 12445555555566666555545555555678984 5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
||+..++.-....+++.+-..+..
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYS 152 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHH
Confidence 899988866666665554444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-06 Score=86.56 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChH----HHHHHHHHHHHHHHHHHhHHH----HHhhhccchhHHH--H
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI--A 140 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~----~a~~~~~~~~~~~~~~~~~~G----~laD~~~Gr~~~i--~ 140 (488)
+..+++...+....+.-..+.++.|..+..+.+.. ..++..+.-.+...+..++.. ++.||-.+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 33344444444455555666677777665444321 144555544445555554443 4455421323333 6
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCC
Q 011358 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (488)
+|.++..++.+.+++...... .+...+.+.+++..++.++|.....|...++.++..|++.
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~ 414 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 677777777776665321100 0011467788889999999999999999999999999988
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
|++.+++++....+|..+++.+.....+..+|...|...++..++..+++++..++
T Consensus 415 ------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 415 ------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888877666678877777777666666666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00038 Score=73.34 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhh
Q 011358 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (488)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i-~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (488)
+...++..+...+..|+.|-++|+- |+||.++. ..++..+..+++.+.. + .+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~--------------------~~ 125 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------P--------------------GQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------c--------------------ch
Confidence 4566777788889999999999987 76665554 4445555555555431 1 13
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh--------------------hhHhHHHHHHHHHHHHHHHHHH
Q 011358 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 187 ~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~--------------------~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
+....+..++..++.+.......+++.|..+++....+ ..|++..++-+...++|+++..
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 33333333444566666677888999999887762000 0016666666667778888776
Q ss_pred HHHHHHhhc--------cchHHHHHHHHHHHHHHHH
Q 011358 247 TLVVYIQME--------HGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 247 ~i~~~i~~~--------~g~~~~f~i~~~~~~i~~~ 274 (488)
++.-.+... .+.|..+.+.++..++..+
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsi 241 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSI 241 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 655433221 2346666666655443333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-05 Score=80.84 Aligned_cols=159 Identities=9% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
..++...++..+......+....|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+.+..+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3333344444444433334444444444443 33344556667778888999999999997 998887655544333333
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh-HhHH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRF 230 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-r~~~ 230 (488)
++.+. +. .+...+++..++.|++.+...+..+++.+|..+.++-++.+. .+..
T Consensus 309 ~~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 309 AMFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 32221 11 123334444556677777766777888888877432111111 3555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~ 258 (488)
++.+.++..+|..+++.++|++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6677788899999999888877654443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00023 Score=71.93 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=96.8
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 011358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (488)
Q Consensus 97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~~~-i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~ 170 (488)
..+++......+..++...... ...+..|+.||+. + ||.. ++.+..+...+..+.+.+..... ..
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~----- 77 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ES----- 77 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cc-----
Confidence 3567777777777776665544 4688899999997 6 5544 44556666666655555432111 00
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
.+.-+.+.........++.++.|+|.+...++..++.+|..++++ |++..++.|...-+|..++.++.|
T Consensus 78 -----~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 78 -----GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred -----ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000011111223344455567888888888999999999999998 999999999999999999999999
Q ss_pred HHhhccc
Q 011358 251 YIQMEHG 257 (488)
Q Consensus 251 ~i~~~~g 257 (488)
.+.+.++
T Consensus 147 ~lL~~~s 153 (403)
T PF03209_consen 147 RLLDPFS 153 (403)
T ss_pred HHccccC
Confidence 8887765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6e-05 Score=78.16 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.++...+..++....+++.....|.++++.+|++..+.++......++..++..+.+.+.++. ++++.+.....+..+|
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 355555555666667777777889999999999999999887777777777777777665444 3444443333444445
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+++.+.... .+ .+....+++.++.++|.+...++.....- .+...+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 01 12333566777788888877777664332 222221 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~ 272 (488)
..++++.....+..+++...+++..+ +-.+.|....++..+.
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 77777777777788888888888665 4455665554444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8e-07 Score=84.43 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=106.9
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 011358 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (488)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~ 171 (488)
+..++..+.+.+.++..++.+.+..-..+.+.++||+.||.+|-|..-.+-..+..+|.+..+....
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi------------- 132 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI------------- 132 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence 4445555556666677888888999999999999999999999887666666666777776664311
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~ 251 (488)
....+++..+|++.|+|.-........+...+|..++ .+..+++.-....+|+.+-..+.++
T Consensus 133 ------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 133 ------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred ------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHH
Confidence 1468899999999999987777777889999999888 9999999888888999888888888
Q ss_pred Hhhccc
Q 011358 252 IQMEHG 257 (488)
Q Consensus 252 i~~~~g 257 (488)
+.+..+
T Consensus 195 ly~~~~ 200 (459)
T KOG4686|consen 195 LYDTMG 200 (459)
T ss_pred HHHHHH
Confidence 876543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=88.32 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i~i~~~~~ 146 (488)
.+|...+..++.....|++..|+|.|+.+..|+|..++......+.++..++.++.|+++||. +.+|..+..+..++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 388899999999999999999999999987789999999999999999999999999999993 25666555554433
Q ss_pred H-HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 147 ~-lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
. +|.+.+.... .......+.+....+.+...++......+......
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 3 3333333221 11222222222233333333444444455544333
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH-HHHHHhhccchHHHHHH
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFT-LVVYIQMEHGWGSAFGA 264 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~-i~~~i~~~~g~~~~f~i 264 (488)
++-+..+.+..+.+.+++++|. ..+.....++|...|+.
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 1444555544444444444443 33444455688888843
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-05 Score=76.50 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 011358 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (488)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~ 160 (488)
..++++.=...+=+|--+.||++..+.+.....+..+..++..+.|++..+-.|++++..++..+..++..++.++...
T Consensus 220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~- 298 (403)
T PF03209_consen 220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL- 298 (403)
T ss_pred HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3445544445566777888999999999999999999999999999998866699998889988888887777666431
Q ss_pred ccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 011358 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i 240 (488)
.+.+.+..+.+++|+|.|.+.....+..-|+..++. .|.+++.|..+..+
T Consensus 299 ------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 299 ------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAI 348 (403)
T ss_pred ------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHH
Confidence 356788899999999999988888888889988777 79999999999999
Q ss_pred HHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 011358 241 GAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 241 G~~i~~~i~~~i~~~----------~g~~~~f~i~~~~~~i~~~~~ 276 (488)
+..++..++|.+.|. .+|..+|.+-++.+++++++.
T Consensus 349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999998888866542 246677777666666655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=82.39 Aligned_cols=176 Identities=8% Similarity=0.042 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCh----HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-------HHHHHHHHHHHH
Q 011358 81 ERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIYLAG 149 (488)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s~----~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-------~i~i~~~~~~lg 149 (488)
....+......++.|.++..+.+. .......+...+...+..++.|++.||+ |+|+ -+.+|.++..++
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence 334444455667777765333221 1223344444455656777788999997 9887 367777777777
Q ss_pred HHHHHHhhh-ccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 150 LTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 150 ~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
.+.++.... ...... ..+.+.++...++.++|.+...+...+++....|++. ++
T Consensus 360 ~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g 414 (489)
T PRK10207 360 FLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MG 414 (489)
T ss_pred HHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HH
Confidence 654432211 000000 1245566677888999999999999999999999888 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~----------~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
..+++++...++|+.++..++.+... ...+.+.|...++..+++.++++...++
T Consensus 415 ~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~ 478 (489)
T PRK10207 415 FILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPW 478 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887765521 1124556666555555555555544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.2e-05 Score=71.15 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=102.6
Q ss_pred hhcCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 011358 98 YVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (488)
Q Consensus 98 ~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~ 175 (488)
..++.+. ...+.....+.....++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------- 91 (338)
T COG0477 30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN----------------- 91 (338)
T ss_pred HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-----------------
Confidence 3444444 4678888888888899989999999998 9998888777665555444444310
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC-CCchhhhhHhHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 011358 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~iG~~i~~~i~~~i~ 253 (488)
.....+++.+.+.|++.+...+...++++|.++. .. |+...+.... ...+|..+++.+++.+.
T Consensus 92 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 92 ---------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred ---------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467778888888999998889999999999987 33 7888888777 57788888887776665
Q ss_pred hc--cchHHHHHHHHHHH
Q 011358 254 ME--HGWGSAFGALAIAM 269 (488)
Q Consensus 254 ~~--~g~~~~f~i~~~~~ 269 (488)
.. .+|++.|.+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 157 GALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcchHHHHHHHHHHH
Confidence 43 57888666554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-05 Score=75.82 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+...+..|+.--+-..+-++++.|+.+..|.+..+++..++.+.++..+|..++-++-.|+ -..|.+.+..++..+-+
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44444444444444445667899999988999999999999999999999999999999887 77777776665444333
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
+..++. .+ ...+.+.+++|+..+...|++.+...+..+++.+ .++.
T Consensus 317 ~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~ 362 (422)
T COG0738 317 LAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG 362 (422)
T ss_pred HHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence 333332 12 2334456688999999999999999999994442 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG-ALAIAM 269 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~-i~~~~~ 269 (488)
.-....+|+.+-|.+.|++.|..|-...+. ++..|.
T Consensus 363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred ---eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 223445889999999999999988776665 344443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.3e-05 Score=79.13 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHhHh--hcCCCh------HHHHHHHHHHHHHHHHHHhHH----HHHhhhccchhHHHHHHHHHH
Q 011358 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+.....+|.+...++.++.. ..+.+. ...++..+.-.+...++.++. +++.||+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34456666777767766543 111111 113444444444555555555 4455554 5667788888888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.++.+.+++...... +|+ ..+.+.+.+..++.++|.+...|...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~----------------~~~---~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAN----------------DAG---IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcC----------------CCC---ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 888887766532100 000 1345567788899999999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~----------~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
|+..++.++++..+|+.++..+.+.... ..++.+.|...++..++..++++...+
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888877666653321 123566776666555544444444333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-06 Score=82.85 Aligned_cols=172 Identities=12% Similarity=0.010 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 011358 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (488)
Q Consensus 82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~ 161 (488)
+......-..++++..+.+.-+.-+.+.......+...++..+.|.++||+ +..+.+....-+..+|.....+.
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP----- 356 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP----- 356 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----
Confidence 344434555677777777775555778777778888999999999999998 94444443333444443332222
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 011358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (488)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG 241 (488)
.| .++..+++-....+++.+...+...+..+...+.+...+-.--|+.+++...+..+|
T Consensus 357 ------~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 357 ------FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred ------hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 12 356667777777788888888887777788877765331112678888888999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 242 ~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
..+||.++|.+.+..|++|.-.+.++..++-.-++...+
T Consensus 416 ~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 416 YAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred hhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877766666555555554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00017 Score=71.76 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 011358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (488)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~--------- 255 (488)
.+...++++.++.|.|.+..++..++++++..++++ +.+.+++......+|+.++|++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999998887 88899999999999999999999977632
Q ss_pred -------cchHHHHHHHHHHHHHHHHHH
Q 011358 256 -------HGWGSAFGALAIAMGISNMLF 276 (488)
Q Consensus 256 -------~g~~~~f~i~~~~~~i~~~~~ 276 (488)
..|++.|++.++...+..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886655544444443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.6e-05 Score=78.44 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=112.3
Q ss_pred HHHHHHHhHhhcCCChHHH-HHHHHHH----HHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 011358 89 SVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (488)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a-~~~~~~~----~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~ 163 (488)
..+...+....++.+.... ....... .+...+..++-|.++|++ |||..+.+..+...+..+.+.+.
T Consensus 41 ~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------- 112 (463)
T KOG2816|consen 41 MTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------- 112 (463)
T ss_pred hhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-------
Confidence 3555555555554443222 2222222 467778889999999998 99999999988877776666553
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHH--hccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 011358 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (488)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG 241 (488)
. +.+++ +.++ +.+...+...++++|....+. |...+++.+.+...+
T Consensus 113 ----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~ 160 (463)
T KOG2816|consen 113 ----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAG 160 (463)
T ss_pred ----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHH
Confidence 2 22222 2222 223445677888999988887 999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccc
Q 011358 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (488)
Q Consensus 242 ~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (488)
..++|.+++++.+..|....|.+.++..+++.+-.++..++-.
T Consensus 161 ~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 161 LVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999888888777666655533
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00017 Score=75.22 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=113.7
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (488)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~--~G--r~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~ 166 (488)
....|+.+++|++.++.....+...+ -...-++.|.++|.+ +| ||+-++++.++..++.+.++.....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 34567888999999887765554433 344567889999987 34 4445556666665555554443110
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Q 011358 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~ 246 (488)
..+.....+..++..+|........-++..|....+... ++...++.+....+|++++.
T Consensus 83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 013344555667788888888888888999887555422 78888899999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 011358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 247 ~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
.+.|++.+..+++..|.+.++...+..+..++..+
T Consensus 142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998887776666555444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=83.18 Aligned_cols=136 Identities=10% Similarity=-0.152 Sum_probs=103.2
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 011358 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (488)
Q Consensus 97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
++.+|+++...+.......++..++..+.+++.+|+ +.|+++.++.++..++.+...+....+..... .
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------- 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------- 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C-------
Confidence 457899999999999988899999999999999887 99999999998887776554322110000000 0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011358 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (488)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~ 256 (488)
.+...+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..
T Consensus 349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011223334456677777777788999999999988 899999999999999999999999998876
Q ss_pred c
Q 011358 257 G 257 (488)
Q Consensus 257 g 257 (488)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 6
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00059 Score=71.72 Aligned_cols=207 Identities=14% Similarity=-0.020 Sum_probs=136.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcCCCh------HHH----HHHHHHHHHHHHHHHhHHHHHhhh
Q 011358 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSF------ADS----SNAVNNFLGISQASSVLGGFLADA 131 (488)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~------~~a----~~~~~~~~~~~~~~~~~~G~laD~ 131 (488)
..+.-++.++.++.++++.-++++.+..+...|+.+ .++-++ .++ .+....+.+...+..++--++.++
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999888888888864 344321 111 233334445555666677788888
Q ss_pred ccch-hHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchh
Q 011358 132 YLGR-YWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (488)
Q Consensus 132 ~~Gr-~~~i~i~~~~~~lg~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (488)
+ |+ |++..++.++..++.+...+...... .++. +..+..- +|........++...+.|+..+.....-.
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY-------DGDGESL-PPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-------ccccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 7 85 66667887777777666654322100 0000 0000000 11112235555666778999998888889
Q ss_pred hhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g--~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
+++++..+++..+ .|..++++|.++.+...+..+..|.+.+..| -.+.+.+.++.++++.+..++..|+
T Consensus 403 al~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 403 ALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999988854421 6999999999999999999888887655443 5567788888888887777666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.9e-08 Score=102.10 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||+.++++.++..+.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444433444444455556666665 2222233455566777888999997 9999999888777766
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+.+...... .++ .++..+...+....+.......+..+....+.+|.||.+. |.+
T Consensus 330 ~~~~~~~~~~---~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~ 385 (451)
T PF00083_consen 330 SLILGIIFFL---GVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RST 385 (451)
T ss_pred cccccccccc---ccc---------------cccccccccceeeeeccccccccccccccccccccccccc------ccc
Confidence 6655411100 010 0000011111111111222222344666788899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
+.++.+....+++.+++.+..++.+..+-...|++.+++..++.+...+..|+
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 99998888889999998888877776663345556555555555554444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00048 Score=73.60 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+..++.....++...+..++.+....+....+-+..|.+... ........+...++..+++++-||+ |||+.++.+..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334555555555555555543333222333334455555332 4444445566677778889999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
.+.++.++++..........+ | ........+....+.+.....+..+..+.+.+|.||.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN-------------S--SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC-------------c--ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999998888876432111000 0 000122222222233333444445666778899999998
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~ 274 (488)
|+.+.++-.....+...+-......+.+..++...|.+.+....+..+
T Consensus 429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 777777643333332222222222222322223445544444444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00077 Score=72.28 Aligned_cols=154 Identities=11% Similarity=0.033 Sum_probs=102.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 011358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~ 140 (488)
..+++|.+...+++.+...+.+|.+....|......++-+.. ..++....+..+..++.++.|++.-++ ||.|..+
T Consensus 305 Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~l 383 (599)
T PF06609_consen 305 LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQL 383 (599)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHH
Confidence 334457777878888888888999888888888777766543 456666677777888888899999876 8766554
Q ss_pred -HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCC
Q 011358 141 -IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (488)
Q Consensus 141 -i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (488)
++.+++.++...++... ++ |....+...++.|+|.|...........-..|++
T Consensus 384 i~~~~~~ta~~Gama~~~------~~--------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 384 IFGSVLMTAFCGAMAAVR------PD--------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHHHHHHHHHHcc------CC--------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence 55555555544444321 21 2222344456777887776555544444445655
Q ss_pred CchhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
. .++..++....-.+|+.+|..+..
T Consensus 438 ~------ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 438 D------IGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred H------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5 888888887777787777766553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=67.75 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHH-H
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFT-T 144 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~i~i~~-~ 144 (488)
+.++.+..+.+...+++..=.++++.|++ .+|.+..-.+.+..+..+...+.+++.|..+||. +||||.++... +
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56777777777777777666677788875 6788888888888888888899999999999986 68888776554 4
Q ss_pred HHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchh
Q 011358 145 IYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (488)
...++.+++..+..... +.++.. ++........++++..+.=+..-..++..-++.+|+..+++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~------------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~--- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER------------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA--- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc------------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence 55666666655533211 111100 11223456677777777777777888999999999987766
Q ss_pred hhhHhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011358 224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVYI 252 (488)
Q Consensus 224 ~~~r~~-~~~~~~~~~~iG~~i~~~i~~~i 252 (488)
+.+ +.+++.....+|+.+|...++|.
T Consensus 176 ---~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 176 ---KKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ---hhhccchhHHHHHHhcceeeeeccccc
Confidence 233 88888888889998887776644
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.9e-05 Score=76.73 Aligned_cols=160 Identities=9% Similarity=-0.056 Sum_probs=121.7
Q ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 011358 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (488)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~ 167 (488)
+.++|--++ ++.+-.+..-|.......++-.+.-++.++|-.++ |+-+++.+++.+..+=.+.+...
T Consensus 390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh-----------
Confidence 444443333 45565555566555566677778888899999998 99999999988777766655543
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHH-HHHHHHHHHH
Q 011358 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAF 246 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~~ 246 (488)
.|+|+.+..-++.|+..+.++.++.+++++..|++. +.++-++... --.+|-.+|.
T Consensus 457 -----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~Gs 513 (618)
T KOG3762|consen 457 -----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGS 513 (618)
T ss_pred -----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhh
Confidence 467777778899999999999999999999999998 7777776443 3456777778
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccc
Q 011358 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (488)
Q Consensus 247 ~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (488)
+++|.+.+.+|-+..|.+.++++++.++.+....+..
T Consensus 514 lIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 514 LIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred hhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888889988888888877777665443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=78.69 Aligned_cols=179 Identities=15% Similarity=0.037 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHH--------HHHHHHHHHHHH-HHhHHHHHhhhccchhHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS--------NAVNNFLGISQA-SSVLGGFLADAYLGRYWTI 139 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~--------~~~~~~~~~~~~-~~~~~G~laD~~~Gr~~~i 139 (488)
+.++..++..|....++|+...+...-+. ..|+.+.+.. ....+.....++ +..++.++.|++ ||++..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 55777778888888888887776555543 4455432222 122222233333 666777789997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccccccchhhhhhhcCCC
Q 011358 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 140 ~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
+.+.+++.+..+.++..... . .+...+++.. +..-++.-+..++.....+|.||.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~---------------------~---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ---------------------L---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc---------------------c---cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 99999888877766654210 0 1111122221 223344555666777778999999
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-----~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
+. |++..++...+.-+|++++.....++++ ..+.+..|++.++++.++.+..++.
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 99 9999999999999999999999999998 7789999999999988887766554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.019 Score=60.24 Aligned_cols=169 Identities=9% Similarity=0.013 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC-----hHHHHHHHHHHHHHHHH-HHhHHHHHhhhccchhHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQA-SSVLGGFLADAYLGRYWTIA 140 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~-~~~~~G~laD~~~Gr~~~i~ 140 (488)
.++.++...+..|+..+.|+.+.. +.+.+..+ .+....+.....+.+.+ ..++-+++++|+ +|++.+.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 345677777777787777765554 34455442 23344444444343333 378889999997 9999888
Q ss_pred HHHHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCcchh-------hHHHHHHHHHHHHHhcccccc-chhh
Q 011358 141 IFTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSW-------QMLYLYTVLYITGFGAAGIRP-CVSS 210 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~g~g~~~~-~~~~ 210 (488)
+....+.+..++.++.... ...+|+ ..|++. .-..|... +.+...+..+...+-.....+ ..++
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~-----~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~ 152 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPT-ALADKL-----LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH-----HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555555554444221 011111 001000 00001000 011111111223333333444 7789
Q ss_pred hhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011358 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~ 253 (488)
+..|.+..++ -.++++++..+.|+|..+++.+..++.
T Consensus 153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 789999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=54.04 Aligned_cols=65 Identities=18% Similarity=0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
++...+...+..+++.|+. +.|++..+.+.+.++......+++++.|+++||+ ||++.+.....+
T Consensus 10 f~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 3333344446677888887 4899999999999999999999999999999998 888877766543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=71.46 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccc--hhHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~laD~~~G--r~~~i~i~~~~~ 146 (488)
.++...+..++....++++.+++|.|+++.+|++..+++.+.+...+ +..++.+++|+++||+ + .++.+.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 47778888888899999999999999999999999999988877665 5678999999999997 7 456666666655
Q ss_pred HHHHHH
Q 011358 147 LAGLTG 152 (488)
Q Consensus 147 ~lg~~l 152 (488)
+++.++
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0054 Score=54.36 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhH
Q 011358 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (488)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (488)
....++......+..++...+-+++ |.|+++.++.+.+.+-...... .+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~ 89 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNS 89 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhH
Confidence 3344455566677777888888886 9999999999877654433221 356
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
..++.+-++.|+|.+........++.+...++. +++..+++....+.+.++|.++.-
T Consensus 90 ~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 90 YTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999988776655 677777766666666666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=62.92 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
..+.++....+.....|....+...++ .+.+|+++.+.+-+.+.-.+++.+.++.-++..|+..|.-+..+.-..+.++
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 456666555555555556666666666 4689999999998877777777777877788888875554444333332222
Q ss_pred H-HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 149 G-LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 149 g-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
- .+++... .....++++..+..+..+...++...++....|.+. |
T Consensus 341 P~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------r 386 (451)
T KOG2615|consen 341 PAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------R 386 (451)
T ss_pred HHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------c
Confidence 2 2222222 234668888888888888889999999999998888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
|+..++......++-++||+++|.+..
T Consensus 387 G~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 387 GTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 999999999999999999999987754
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0027 Score=68.35 Aligned_cols=173 Identities=10% Similarity=0.014 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc-CCCh-HH-HHHHHHHHHHHHHHHHhHHHHHhhhccchhH---------
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSF-AD-SSNAVNNFLGISQASSVLGGFLADAYLGRYW--------- 137 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~-~~-a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~--------- 137 (488)
.+|++....+|..-+-..+..|+ -++.+.+ |.+. .+ ..+.++.+.+.+++|-+.+|+++. +.-||+
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt~ 431 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPITI 431 (591)
T ss_pred hHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchhH
Confidence 47777777777554443344443 3455566 6633 32 233788899999999999999983 323333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCC
Q 011358 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (488)
Q Consensus 138 ~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (488)
.+.+..+ +.++.+++++.. ....++++-+++|++.|...+...+..+|+|.
T Consensus 432 ~l~~~~~-~~~~~lll~~~~----------------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg 482 (591)
T PTZ00207 432 ALFIPSV-CIITMLTLFLTL----------------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA 482 (591)
T ss_pred HHHHHHH-HHHHHHHHHHHC----------------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence 2333333 555666665541 11468899999999999999999999999999
Q ss_pred CCCchhhhhHhHHHHHHHHHHHHHHHHH-HHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~-~~i~~~i~~~-------------~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
++ -++-++....+.-+|+.+- -.+.|.+-|. ..++..|.+.++..++++++-....
T Consensus 483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 66 7888888888888887764 3455655331 2378889888777777776655444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.035 Score=57.75 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHH
Q 011358 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (488)
Q Consensus 111 ~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (488)
..+......+..++++.+-|.+ |.|+.+.++...+....+.... .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 5566677788889999999987 9999999999887765554433 256778
Q ss_pred HHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Q 011358 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (488)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 245 (488)
+.+-++.|+|.+....-...++++-..++. +.+..++.......+.++|
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIG 154 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhh
Confidence 888899999999888888888888777666 5555555444444444444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=60.42 Aligned_cols=138 Identities=11% Similarity=-0.011 Sum_probs=89.6
Q ss_pred HHHHHHHHhHhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hH------HHHHHHHHHHHHHHHHHH
Q 011358 88 LSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YW------TIAIFTTIYLAGLTGITL 155 (488)
Q Consensus 88 ~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~------~i~i~~~~~~lg~~ll~~ 155 (488)
..+.+..|..+. +|++ ..+++..+.-.+...+..|+.+++=.+. +| ++ =+.++.++..++.+.+.+
T Consensus 287 ~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~ 364 (493)
T PRK15462 287 GGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTL 364 (493)
T ss_pred hhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334455555443 2322 2345555555555666666777775554 32 21 256777788888777766
Q ss_pred hhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHH
Q 011358 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (488)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (488)
........ ...+...+++..++.++|.-...|...+++++..|++. ++..++.++
T Consensus 365 ~~~~~~~~-------------------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~ 419 (493)
T PRK15462 365 SARWSAMY-------------------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYM 419 (493)
T ss_pred HHhhcCCC-------------------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHH
Confidence 54311100 01355667788888999999999999999999999988 999999987
Q ss_pred HH-HHHHHHHHHHHHHHH
Q 011358 236 LS-VTVGAIVAFTLVVYI 252 (488)
Q Consensus 236 ~~-~~iG~~i~~~i~~~i 252 (488)
.. ..+|..++..+.+..
T Consensus 420 l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 420 LLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 74 367777766666554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.051 Score=58.06 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH-HHHHHHHHhhhcc
Q 011358 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL-AGLTGITLCATMK 160 (488)
Q Consensus 82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~-lg~~ll~~~~~~~ 160 (488)
.++.-+.-....-.+...+|-+....+.+++++.++..+|..++|+++++...+...+.+...+.. +...++......
T Consensus 27 g~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~- 105 (521)
T PRK03612 27 AACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAF- 105 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333333344455566788888889999999999999999988887543112211111111111 111111111000
Q ss_pred ccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 011358 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (488)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i 240 (488)
.. .....++...++.++..|+..|....+..+... ++ .+...+-.|....+
T Consensus 106 ---~~-------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntl 156 (521)
T PRK03612 106 ---QG-------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYL 156 (521)
T ss_pred ---HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhH
Confidence 00 011122233344566666655554444433221 11 35556777888889
Q ss_pred HHHHHHHHHHHHhh-ccch-HHHHHHHHHHHHHHHHHHH
Q 011358 241 GAIVAFTLVVYIQM-EHGW-GSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 241 G~~i~~~i~~~i~~-~~g~-~~~f~i~~~~~~i~~~~~~ 277 (488)
|+++|.++.+++.- ..|- +..+.++.+..+++++.++
T Consensus 157 Ga~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 157 GALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887644 5664 3444444333444433333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.072 Score=54.29 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHHHHHhHhhcCC---ChH----HHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHHHHHHHHHhhhc
Q 011358 88 LSVNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGLTGITLCATM 159 (488)
Q Consensus 88 ~~~~l~~yl~~~~~~---s~~----~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-~i~i~~~~~~lg~~ll~~~~~~ 159 (488)
+....|.|+++..+. +.. -.+...++..+..++..|+-|-++|.. |+|| .+.+...+..+..+.+....
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~-- 110 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP-- 110 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC--
Confidence 334577788776544 332 234455666777788889999999987 7555 44455555555555555541
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHH
Q 011358 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (488)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (488)
+ ..++....+...+..++..+......++..|..++++ .++..+.-+-..+
T Consensus 111 -----~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gy 161 (438)
T COG2270 111 -----P------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGY 161 (438)
T ss_pred -----C------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccc
Confidence 1 1245555556667788888888889999999998877 3444444344455
Q ss_pred HHHHHHHHH
Q 011358 240 VGAIVAFTL 248 (488)
Q Consensus 240 iG~~i~~~i 248 (488)
+|+.+..++
T Consensus 162 lgs~i~li~ 170 (438)
T COG2270 162 LGSVILLIF 170 (438)
T ss_pred ccchHHHHH
Confidence 666555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0082 Score=62.92 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFG-LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
|..+.+++..+.....-.+ ....+..|+..+++|+..+.+...+.......++.++...+--+.+|-++.+.+|++...
T Consensus 240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~ 319 (463)
T KOG2816|consen 240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEF 319 (463)
T ss_pred ccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHH
Confidence 3344444444443333222 222456788889999999999999999999999999888555555699999999999998
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+...+.+++ .+.+.++.+.++.++ .+...+...++.+-+.++++ +
T Consensus 320 ~~~~~~af~----------------------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~ 364 (463)
T KOG2816|consen 320 LQLLLFAFA----------------------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------Q 364 (463)
T ss_pred HHHHHHHHh----------------------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------c
Confidence 988888886 355666666655544 45567888999999999888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~ 253 (488)
|..+++......+.++++|.+-+.+.
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999998887663
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.65 Score=47.71 Aligned_cols=156 Identities=9% Similarity=-0.013 Sum_probs=96.2
Q ss_pred HHHHHHHHhHhh-cCCChHHHHH-HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 011358 88 LSVNMVTFMFYV-MHKSFADSSN-AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (488)
Q Consensus 88 ~~~~l~~yl~~~-~~~s~~~a~~-~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~ 165 (488)
.-.++..|+++. .|++..+... +.-.+.-...+..++...+.|.. |.|++++++.+..++..+++...
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 345678899887 8999887663 44445555566777889999975 88999888888777776666554
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Q 011358 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (488)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 245 (488)
.+...+-+.-++.|++.+. .....+++=...|+++ --+..++...+.-+|-.++
T Consensus 92 -------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 92 -------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred -------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777654 2333344333333332 2333444444444444444
Q ss_pred HHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 246 FTLVVYIQ--MEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 246 ~~i~~~i~--~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+++-.+. +..++....++......+++++.++.
T Consensus 146 ~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 146 SLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 44333222 24467777788877777777665554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.072 Score=56.88 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg 149 (488)
....+.+..+.....+|+..-+ ...+|.+.......... .........+.+-|+. |||.....+.++..++
T Consensus 323 ~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 323 RTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3444444444444555544332 23345444333222222 3344445558899997 9999999999988888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhH
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (488)
.+..+.... . .+.....+...+..++.+........+.+|++|+.. |..
T Consensus 394 ~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~ 442 (521)
T KOG0255|consen 394 LLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNT 442 (521)
T ss_pred HHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHH
Confidence 887776521 0 110112222222333333334555888899999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 230 ~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
+.+.......+|++++|.+......
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987754433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0069 Score=61.87 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh-HHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLAG 149 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-~~i~i~~~~~~lg 149 (488)
+.++..........||+..+.+-.-+ ..-|++...+|.+.....+.+.++.++.|.++||. ..+ .++.+......++
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVG 345 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence 44444444444455555555433232 34577778899999899999999999999999998 544 4444444444444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhc-CCCCCchhhhhHh
Q 011358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLD 228 (488)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~-~~~~~~~~~~~r~ 228 (488)
...+..... . .| ....++....+.|++..+..|.-.-+..|. ||..+ +
T Consensus 346 ~~~l~~~t~----~----~~----------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~ 394 (480)
T KOG2563|consen 346 TLMLLTCTL----F----LG----------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------G 394 (480)
T ss_pred HHHHHHhhc----c----CC----------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------c
Confidence 321111111 0 11 223344455566777777777777777775 56555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHHHHHHHhccccc
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYR 284 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g----~~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (488)
+..++.+...++-+++-.++.+...+..+ |...-+..+....+.+++..+.++.|+
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 55566666666666666666677766555 333333333444444445555555544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00032 Score=75.07 Aligned_cols=181 Identities=9% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhc-cchhHHHHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~laD~~-~Gr~~~i~i~~~~~~ 147 (488)
...+..+...++.+...|+.+++|.|+..+|+.+.++++.+.+...+ +..+|.++||++..|+ ++.|..+....+..+
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 46777788888888889999999999999999999999988877654 7778999999999987 334555444444433
Q ss_pred HHHHHHHHhhhc-----cc--cCCCC-------------Ccccccc----c--ccCCCCCcchhhHHHHHHHHHHHHHhc
Q 011358 148 AGLTGITLCATM-----KV--FMPNQ-------------DNCDRIS----Q--LLGSCEPAKSWQMLYLYTVLYITGFGA 201 (488)
Q Consensus 148 lg~~ll~~~~~~-----~~--~~~~~-------------~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~g~g~ 201 (488)
+..+........ +. +..++ ..|.... + ....|+.+=......+++..++..+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 333321111000 00 00000 0010000 0 011132221123344444444444444
Q ss_pred cccccchhhhhhhcCCCCCchhhhhHhHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 011358 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH 256 (488)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~iG~~i~~~i~~~i~~~~ 256 (488)
+..........-...++++ |..+.++.. +...+|.+-||++.|++.|..
T Consensus 466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 4433344444456677777 899999854 456788899999999998864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.036 Score=60.47 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhc-cchhHHHHHHHH
Q 011358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAY-LGRYWTIAIFTT 144 (488)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~laD~~-~Gr~~~i~i~~~ 144 (488)
.....++...++...+.|+.+++|-|+.++||.+...|..+.+... .+..+|.++||++.-|+ +.-|.+.....+
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~ 469 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV 469 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence 3777888899999999999999999999999999999998886655 45677899999998887 333444443333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.1 Score=47.55 Aligned_cols=175 Identities=12% Similarity=0.028 Sum_probs=93.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~i~i~ 142 (488)
+..++.++.+.+..++..+.+..+.. +-.-+ .... +.+....+-..... ...+..++-.++++++ +|.+++.+.
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~-~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRD-LKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 44556688888888887777643332 11111 1111 22222222222222 4455667789999997 999988877
Q ss_pred HHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCcchh------hHHHHHHHHHHHHHhcccccc-chhhhhh
Q 011358 143 TTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSW------QMLYLYTVLYITGFGAAGIRP-CVSSFGA 213 (488)
Q Consensus 143 ~~~~~lg~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~g~g~~~~-~~~~~~a 213 (488)
...+.....+.++.... ..++|+. .+. + .....++.-. +.|.+.+.-+..-+-.....+ ..+++..
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~-~~~---~-~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN 170 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDA-FAD---K-LLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN 170 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCH-HHH---H-hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555543221 1123320 000 0 0000010000 111111111111122122223 4588889
Q ss_pred hcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 214 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
|.+..++ -.++++++..+.|+|.+++..+..++.+
T Consensus 171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887 7889999999999999999988888766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0068 Score=57.74 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=65.5
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 011358 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (488)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~ 171 (488)
...|+-+.+|+...+.+....+..+...+...+.|-|+|+- |||+..+...+ .+++.-+.-.
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKh------------- 120 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKH------------- 120 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhc-------------
Confidence 34566677888888888777777777778888899999997 99997655443 4444433311
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhh-hhhhcC
Q 011358 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQF 216 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~ad~~ 216 (488)
++++-.+.++|++-|+..+......-+ +++|.-
T Consensus 121 ------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 121 ------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred ------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 145667889999999988876655543 344443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.079 Score=41.62 Aligned_cols=65 Identities=8% Similarity=-0.073 Sum_probs=56.5
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011358 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (488)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~ 156 (488)
.+.+.++++.++|.++++++.+.-.+++.+|.+...++.++. .+++.+..+.+...+..+.+++.
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567789999999999999999999999999999999986 78888888888888888877765
|
Note that many members are hypothetical proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.24 Score=51.65 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchh-------HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCC
Q 011358 108 SNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180 (488)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-------~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (488)
++..+.-.+...+..++..++--+. |++ .-+-++.+++.++.+.+........ +
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~------------------~ 387 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG------------------G 387 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc------------------C
Confidence 3444444444555666666666553 433 2344555555566555554421110 0
Q ss_pred CcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHH------Hhh
Q 011358 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQM 254 (488)
Q Consensus 181 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~------i~~ 254 (488)
++...+.+.++.+.+++++|.=+..|...++.+...|++- .+..++.|.+....|..++..+++. ..+
T Consensus 388 ~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~ 461 (498)
T COG3104 388 PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYT 461 (498)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhh
Confidence 1112467888889999999999999999999999999877 7888888888888888877666652 122
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Q 011358 255 EHGWGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 255 ~~g~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
.......|+.++....+..++++...
T Consensus 462 ~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 462 AFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 33455566666655554444444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.05 Score=55.94 Aligned_cols=134 Identities=8% Similarity=-0.049 Sum_probs=71.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc---chhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 011358 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (488)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~---Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
.|.+..+..+...++..++.+|.++||.++|++- -|-.+..+..+...++..............+.
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~----------- 346 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS----------- 346 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-----------
Confidence 3455556667777788899999999999999941 22123333333322222211111000000000
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhc-cccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 011358 177 GSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYIQM 254 (488)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~-~iG~~i~~~i~~~i~~ 254 (488)
.+.. +.+.++++|.-. ....+.......+..|++. |.+++++..... .+|..-+|.+.|.+++
T Consensus 347 --------~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 347 --------SSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred --------HHHH-HHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 1211 111222222222 2223445566778889888 999999966644 5555666668888887
Q ss_pred cc-chH
Q 011358 255 EH-GWG 259 (488)
Q Consensus 255 ~~-g~~ 259 (488)
+. ||+
T Consensus 412 ~l~g~~ 417 (493)
T KOG1330|consen 412 KLRGYK 417 (493)
T ss_pred HhhCCC
Confidence 54 565
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.53 Score=48.97 Aligned_cols=142 Identities=9% Similarity=-0.076 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 011358 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (488)
Q Consensus 82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~ 161 (488)
.++--+....+..|+... |++....+..=+...+....+..+..++-+|+ |-.|+=.++.....+...+...+...+.
T Consensus 271 Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~ 348 (432)
T PF06963_consen 271 YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG 348 (432)
T ss_pred HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334556788899877 99999999988888889999999999999998 9988888887765555444444322110
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 011358 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (488)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG 241 (488)
.+ .+..+...++.+.++.=+|.=++.-+..-++-|..|+++ |+...+..+...++.
T Consensus 349 -~~-----------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 349 -SP-----------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLF 404 (432)
T ss_pred -CC-----------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHH
Confidence 00 012345556666666557777777888888888888877 999999988888888
Q ss_pred HHHHHHHH
Q 011358 242 AIVAFTLV 249 (488)
Q Consensus 242 ~~i~~~i~ 249 (488)
-.+...++
T Consensus 405 ~ll~~~~~ 412 (432)
T PF06963_consen 405 ELLSFVLT 412 (432)
T ss_pred HHHHHHHH
Confidence 87776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.031 Score=58.42 Aligned_cols=207 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH--HHHHhHHHHHhhhccch---hHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLADAYLGR---YWTIA 140 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~--~~~~~~~G~laD~~~Gr---~~~i~ 140 (488)
-.|+..+.++...+...+.+..+-+..+.+....++|+.+++....+...... ....+...+..-+. |+ |+.+.
T Consensus 259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~ 337 (488)
T KOG2325|consen 259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIIL 337 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeee
Confidence 34666777788888888888776777777777788998877665544433222 22233334444443 43 33343
Q ss_pred HHHHHHHHHHHHHHHh-hhcc-ccCCCCCcccccccccCC-CCCcchhhHHHHHHHH-HHHHHhccccccchhhhhhhcC
Q 011358 141 IFTTIYLAGLTGITLC-ATMK-VFMPNQDNCDRISQLLGS-CEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQF 216 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~ 216 (488)
.+..+......+.... .+.. .+.+.+..+.+...+.++ |+.....+...++++. ++.|.+.-.+.....++.+++.
T Consensus 338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL 417 (488)
T KOG2325|consen 338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL 417 (488)
T ss_pred ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence 3322222211111110 0000 000000000001112222 6665555666666654 3456666666677788999999
Q ss_pred CCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
.+++ .+..-+++.....++..+||++...+-...|.++...+.+...++....+...
T Consensus 418 gp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 418 GPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred CCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9988 78888888888899999999998888777887776665555444444443333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.33 E-value=4.3 Score=42.29 Aligned_cols=194 Identities=9% Similarity=-0.120 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~ 150 (488)
.+.+....++.++.-=....-.+.|+.+-+.-+.--.+..-..-.+...++.+.-|...||. -|.+++..+.++--+..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 44455555555555444444466777666544444444444444556666777778888997 89988887766433332
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHH
Q 011358 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (488)
Q Consensus 151 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (488)
.............+. ...+ +.......+.+..++.++..-+..++.-+.=-|+...-..++...+...
T Consensus 83 ~~s~~~~~~l~~~~~-----------~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~ 150 (432)
T PF06963_consen 83 AASCALFLLLLSYPS-----------SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM 150 (432)
T ss_pred HHHHHHHHHHHhCCc-----------cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence 222211110000000 0000 0001222222222222222222222223333344221111111113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 011358 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (488)
Q Consensus 231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~ 277 (488)
-+...=.=.+.-++||++.|.+....|...+.++.++..++++++=+
T Consensus 151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 33333334556789999999998888888887777777777776633
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.2 Score=46.58 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=74.1
Q ss_pred HHHHHHHHhHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCcchhhHHHHH
Q 011358 115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (488)
Q Consensus 115 ~~~~~~~~~~~G~laD~~--~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (488)
..+.+++.++.+.+++|. +||++++.++..++.++.++.-+...... +.+. ..-....+++.....
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-----------~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-----------DSPPLLFTPSYYLAL 357 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC-----------cccccccccchhHHH
Confidence 345555666667776554 58999999999988888777666532111 1110 000111122343444
Q ss_pred HHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011358 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (488)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~ 250 (488)
+.-++.|++-+........++++.+|. + |..+++++-+-..+++.++.....
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455678999999999999999999954 4 677777776666666665544433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.88 Score=46.68 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (488)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~ 253 (488)
+.+.+++..+..|+..|..+.+....+.+..++++ |...++...++-.+|..++.+++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666666677899999999999999999888776 999999988888888888877765553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.07 E-value=9 Score=40.17 Aligned_cols=170 Identities=9% Similarity=0.001 Sum_probs=98.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC---ChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA 140 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~i~ 140 (488)
+..++.+..+.+..+|..+.++.+.. +.+.+.. +.+....+-..... .+.+..++-+++.+++ -|.+++.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~ 96 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence 44667788888888887777754443 2333333 33444444444444 5667788899999987 8888887
Q ss_pred HHHHHHHHHHHHHHHhhhcc--ccCCCCCcccccccccCCCCCc-c---------hhhHHHHHHHHHHHHHhcccccc-c
Q 011358 141 IFTTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCEPA-K---------SWQMLYLYTVLYITGFGAAGIRP-C 207 (488)
Q Consensus 141 i~~~~~~lg~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~l~g~g~g~~~~-~ 207 (488)
+....+....+++++..... .++|+ +.--++. . -..| . .+....+++.- -+-...... .
T Consensus 97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~--~~~~~~~--~-~~~p~~l~~~ili~~~Ws~s~~Yi~a---ELWgslV~S~l 168 (509)
T COG3202 97 IILGFFLGFFALFAFVIYPYKDILHPD--PEFSRDL--F-ADLPMFLKWFILIVGEWSYSLFYIMA---ELWGSLVLSLL 168 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCC--HHHHHHH--H-hhCCccceeeeEeecchHHHHHHHHH---HHHHHHHHHHH
Confidence 77766666666666553310 01111 0000000 0 0011 0 01222222221 111111222 4
Q ss_pred hhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 208 ~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
.+.+.-|+...++ -.+++++++...|++..++..+..++.+
T Consensus 169 Fw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 169 FWQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888777 7899999999999999999998888865
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.082 Score=55.41 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH-HHHHHHHHHHH
Q 011358 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-IYLAGLTGITL 155 (488)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~-~~~lg~~ll~~ 155 (488)
.+...++.|.. .+|+++.+.+.++..-.+..+++.|+.|++|||+ -++|.++++.. ...++.+++.+
T Consensus 29 ~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHheee
Confidence 45566777764 6899999999999999999999999999999998 66665555554 44444444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.8 Score=42.50 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=91.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh-----hccchhHH
Q 011358 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (488)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD-----~~~Gr~~~ 138 (488)
.++..+.+..+++..+.+..-. |....+|..++ .-|.|-++.+....++ -=+-.-++.+++-| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4555667888888888877665 66665565554 5577766655433222 12234567788888 76 99986
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
-++=. -+.+|.+++.++........+ ....++...+....++.-+..+.-...+-+..-.+..+
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~g~---------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGLGG---------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCccccc---------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 54322 234555555555332111100 00112333333344555666665555666666667776
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~ 249 (488)
++ .+-+......+.+.|.+++..+.
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 66 77777777777888887776543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=89.27 E-value=32 Score=36.32 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred HHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 011358 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (488)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i 271 (488)
+.++.........-..+.+++|++.+ |..+++-+....++.+++..++.+.+.+..||..+..+.-++.++
T Consensus 275 ~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 275 AYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555556666677888888876543 888999988888888877766678999999999776665444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.35 E-value=4.5 Score=39.11 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcch
Q 011358 107 SSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (488)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~--~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (488)
-|.+.+.|.....+|+-+...+..|- ..| ..+.+..++..+. +++.+..+. ..|+ .
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~-l~Lpilt~~--vsP~------------------k 341 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAA-LLLPILTSS--VSPS------------------K 341 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHH-HHHHHHHhc--cCCC------------------c
Confidence 46677777777766666655555442 111 2233333333222 233322211 1121 1
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 011358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (488)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i 264 (488)
.+...-+++..++-.+.|...|.+.-+-.+..|++. |.+.++++..-.|+-..++....-.=....+-+..|.+
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~i 415 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGI 415 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhh
Confidence 233334566667777888888998888888888877 99999999888887665443210000012356677888
Q ss_pred HHHHHHHHHHH
Q 011358 265 LAIAMGISNML 275 (488)
Q Consensus 265 ~~~~~~i~~~~ 275 (488)
+.+...++.+.
T Consensus 416 cS~~~~~a~i~ 426 (454)
T KOG4332|consen 416 CSAFLFVASIL 426 (454)
T ss_pred hHHHHHHHHHH
Confidence 88777766544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.2 Score=43.35 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=37.1
Q ss_pred ccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011358 205 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (488)
Q Consensus 205 ~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~ 256 (488)
.-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..
T Consensus 336 ~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 336 FMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred HHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445567899999888 799999999999999999988888776543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.14 E-value=10 Score=37.69 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=63.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+...|.++.+....+. .+..|.-..++...+...+|. ...+.+. .......++.+.+-.+ +|-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~-~f~a~~gl~nlq~~vn~~lg~--~sl~~~y----~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLL-TFTAYLGLQNLQTSVNYDLGT--VSLGALY----LSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhcCccc--chhhhhh----HHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 3344556655554444 444445555676666543332 2222222 2222333444455554 599999988877
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCC
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (488)
.+.... +.... +.+..++-+-.+.|+|.+...+.-.++++..-.
T Consensus 97 ~Y~lyi-----A~Nl~------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 97 PYALYI-----AANLE------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHH-----Hhhcc------------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 665432 21100 234456666677888888887777777666543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=85.83 E-value=16 Score=37.58 Aligned_cols=130 Identities=8% Similarity=0.020 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHH
Q 011358 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189 (488)
Q Consensus 110 ~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (488)
+..+-.+-..+.-++.-++.+|+ .-+.=+.+..++..+|.++.+++ .+.+.
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~ 114 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWV 114 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhH
Confidence 44444455556666777778876 43322344445666777766654 35566
Q ss_pred HHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 011358 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (488)
Q Consensus 190 ~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-~~g~~~~f~i~~~~ 268 (488)
-+++.++.+++.|.-.....++.+ .+++.. .+.|..+...++++|...-..+++ ..+.+..+.+....
T Consensus 115 ~l~Gv~las~ssg~GE~tfL~lt~-~y~~~~----------l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~l 183 (402)
T PF02487_consen 115 RLLGVVLASLSSGLGEVTFLSLTH-FYGKSS----------LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVL 183 (402)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHH-hcCccc----------cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 677888888888877777766643 444321 233344444555666554444444 22345566555544
Q ss_pred HHHHHHHHHHh
Q 011358 269 MGISNMLFFIG 279 (488)
Q Consensus 269 ~~i~~~~~~~~ 279 (488)
-++-++.+++.
T Consensus 184 p~~~~~~~f~~ 194 (402)
T PF02487_consen 184 PAIFLLSYFFL 194 (402)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=81.18 E-value=23 Score=36.98 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 011358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (488)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i 248 (488)
+.+..++..++.|+..|-..+....+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778899888877777777777766544 6666666666666666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 488 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 1e-85
Identities = 82/423 (19%), Positives = 157/423 (37%), Gaps = 51/423 (12%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---V 330
Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
M L + L++ P R+ + L+++G G+A++ LS
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSW 387
Query: 471 IWA 473
I
Sbjct: 388 IVV 390
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-07
Identities = 68/456 (14%), Positives = 130/456 (28%), Gaps = 145/456 (31%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
YK F F+L++ + ++ + Q++ W S + + I + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
+ + + Y + L + TR V L AA
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 357
+ E+ L ++P + + R L A +++ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP--------RRLSIIAESIRDGLAT 343
Query: 358 PSPW------KLCTVTQV-------EEVKTL-VRL------VPIPACTIML--------- 388
W KL T+ + E + + RL IP + L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 389 -NVILTEFLTLSV----QQAYTMNTHMGKLKLPVTC 419
V++ + S+ + T++ L+L V
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.91 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.82 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.76 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.75 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.67 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.14 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.13 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.83 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.08 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=210.65 Aligned_cols=347 Identities=19% Similarity=0.252 Sum_probs=234.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT 138 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~-~~Gr~~~ 138 (488)
+++++.++.+.+..++..+.+|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44566788999999999999999999999999988 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCC
Q 011358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (488)
Q Consensus 139 i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (488)
+.++.++..++.++++++ .+...+++++++.|+|.+...++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999988887764 2466788999999999999999999999999998
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-Cchh
Q 011358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLT 294 (488)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~l~ 294 (488)
++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++.+++..++.... +|.. ....
T Consensus 140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4aps_A 140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPE 215 (491)
T ss_dssp CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHH
T ss_pred cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccc
Confidence 7733 788889899999999999999999999989999999998887777776665554433221 1111 1111
Q ss_pred HHHHHHHH--------HHHhhhccccccccccccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCcccccc
Q 011358 295 RVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV 366 (488)
Q Consensus 295 ~~~~v~~~--------a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 366 (488)
+..+.+.. +.-- .. +...+..+ .++................. ...|+...
T Consensus 216 ~~~~~~~~~g~~l~~~~~~~--~~--------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 273 (491)
T 4aps_A 216 EVKPLLVKVSLAVAGFIAII--VV--------MNLVGWNS----------LPAYINLLTIVAIAIPVFYF-AWMISSVK- 273 (491)
T ss_dssp HHHHHHHHCCCCCHHHHHHH--HH--------HHHHSSCC----------TTHHHHHHHHHHHHHHHHHH-HHHC-----
T ss_pred hhHHHHHHHHHHHHHHHHHH--HH--------HHhccCcc----------cccchhhhhHHHHHHHHHHH-HHHhhccc-
Confidence 11111000 0000 00 00000000 00000000000000000000 00111110
Q ss_pred hhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHh-ccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhccc
Q 011358 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR 445 (488)
Q Consensus 367 ~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~-m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~~r 445 (488)
....+.++....++++.....++..+.+..+.+..+... .+.+ ..+.+.+..++.+..++..++.+++.+++.||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r 349 (491)
T 4aps_A 274 VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN 349 (491)
T ss_dssp --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence 112345666677788888888899988877765443322 2222 14678888999999999999999998888776
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 011358 446 ITGHPRGASQLQRVGIGLAVSILSVIWADTS 476 (488)
Q Consensus 446 ~~~~~~~~s~~~ki~iG~~~~~is~~~~~~~ 476 (488)
. +...+++.+|.++.++++++.++.
T Consensus 350 ~------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 350 Q------PSSPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTTHHH
T ss_pred C------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 3 456678889999988888666554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=224.40 Aligned_cols=358 Identities=22% Similarity=0.350 Sum_probs=228.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i 141 (488)
++.++.+.+..++..+++|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4456778888999999999999999999999999 9999999999999999999999999999996599999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCc
Q 011358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (488)
Q Consensus 142 ~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (488)
+.++..++.++++++. .+.+.+++++++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~- 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN- 142 (524)
T ss_dssp HHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT-
T ss_pred HHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc-
Confidence 9999888888877651 156778899999999999999999999999999887
Q ss_pred hhhhhHh---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHH
Q 011358 222 DYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 298 (488)
Q Consensus 222 ~~~~~r~---~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (488)
|+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.+.++...++.++.+|.+++..+..+
T Consensus 143 -----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (524)
T 2xut_A 143 -----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLP 217 (524)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHH
Confidence 64 4556689999999999999999998888999999998888777766665554444433333333223233
Q ss_pred HHHHHHHhhhccccccccc--------cccccCCCcccccCCcccccCCchhHHHHHHhhhcccccCCCCc-------cc
Q 011358 299 VLVAAFRKRHAAFSSSELI--------GLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW-------KL 363 (488)
Q Consensus 299 v~~~a~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-------~~ 363 (488)
.+..+.++++...+..... ..+..+..+ ....+ .....+...... . ..+.+| +.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 286 (524)
T 2xut_A 218 VIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIP----TLGIV---AGLCCAMVLVMG--F--VGAGASLQLERARKS 286 (524)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHTGGGTT----TTCSS---HHHHHHHHHHHH--H--HHTGGGTHHHHSCCS
T ss_pred HHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccc----hhhhh---hhhhhhhhhhhc--c--cccchhhHHhhhhcc
Confidence 3333332221100000000 000000000 00000 000000000000 0 001122 11
Q ss_pred ccchhHHHHhhHHhhhhhhhHHHHHHHHHhhhhHHHHHHHHhccCccCCcccCCCcccchhhHHHHHHHHhhhhhhhhhc
Q 011358 364 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC 443 (488)
Q Consensus 364 ~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~m~~~~~~~~i~~~~~~~~~~~~~ii~~pl~~~~~~~l~ 443 (488)
++..+.++.|+++..++++.....++..+.+..+.+..+..+++.+. + ++.+.+..++.+..++..|+.+++..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (524)
T 2xut_A 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAI 363 (524)
T ss_dssp CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-----
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH
Confidence 22223455677777778888888888888887777777766665432 2 35677788888888899999998866665
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 011358 444 RRITGHPRGASQLQRVGIGLAVSILSVIWADT 475 (488)
Q Consensus 444 ~r~~~~~~~~s~~~ki~iG~~~~~is~~~~~~ 475 (488)
+|++. ..++.+++.+|.++.++++++.++
T Consensus 364 ~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~ 392 (524)
T 2xut_A 364 ERMGV---KLTALRKMGAGIAITGLSWIVVGT 392 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTT
T ss_pred HhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 65432 255667788888888887765543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=171.75 Aligned_cols=181 Identities=12% Similarity=-0.002 Sum_probs=148.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 011358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (488)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~ 144 (488)
+++++.+..+.+..+...+....+.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34556666666666666666654444 44557789999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhh
Q 011358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (488)
Q Consensus 145 ~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (488)
+..++.+++..... ..+.+.+++++++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 99999888733211 0367889999999999999999999999999999988
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHH
Q 011358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|+..+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..+.++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5444 999998766665555444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=169.72 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=148.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 011358 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (488)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~ 145 (488)
.+|+.++...+..+...+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3455566666666666666655555555 455667 9999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++++.... ..+.+.+++++++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 152 (451)
T ss_dssp HHHHHHHHHHCHHH------------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHHHHHhhhhc------------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence 99999888772100 0245678889999999999999999999999999887
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 280 (488)
|++.+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.++..
T Consensus 153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888888 99999998877666655544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=174.20 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcch
Q 011358 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (488)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (488)
...+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++......... .. .-...-.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence 4556788889999999999999999998 99999999999999999988864211000000 00 0000011
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011358 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (488)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~ 254 (488)
.+...++++|++.|+|.|+..+....+++|..|++. |+...++++.+..+|..+++.++..+..
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 478899999999999999999999999999999988 9999999999999999999887766543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-16 Score=154.23 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
+.+.+..++..+....+...++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34455555555555545554544 5678999999999999999999999999999999998 999999999999999888
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (488)
++... .+.+.+++++++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88765 467888999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (488)
Q Consensus 232 ~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~ 274 (488)
++++...++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999887666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=138.53 Aligned_cols=180 Identities=15% Similarity=0.122 Sum_probs=148.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHHHHHHHH
Q 011358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY 146 (488)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~i~i~~~~~ 146 (488)
.+.++...+..++..+.++++..+++.|+++.+|++..+++.......++..++.++.|+++||+. |||+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 355777888888888888899999999999889999999999999999999999999999999942 8888887776655
Q ss_pred H-HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 147 ~-lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
. ++.+++.+. ++ .+...+.+..++.|++.+...+...++..|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 444433322 10 245566677778888888888888899999999888
Q ss_pred hHhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 226 ~r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
|++.+++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998888777776665553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=140.83 Aligned_cols=170 Identities=11% Similarity=-0.122 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|..+......++..+.+..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3455566555665666666677899999999999999999999999999999999999999997 999999988776554
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
+...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.+
T Consensus 86 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~ 136 (417)
T 2cfq_A 86 MFAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS 136 (417)
T ss_dssp CHHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence 32211111000 000 012233333333333333333333333332211 115
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~ 269 (488)
+..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 656666667778999999999999876 58999888765553
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.8e-12 Score=127.13 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
+.++...+..++.....+++..+++.| +++.+|++..+++.....+.++..++.+++|+++||+ |||+.+.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 346666677777777888888999999 8888899999999999999999999999999999997 99999999988877
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+++... .+.. .++..++.+++.+...+...++..|.+|++ +
T Consensus 337 ~~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 380 (438)
T 3o7q_A 337 ALCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T 380 (438)
T ss_dssp HHHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred HHHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence 776666553 1222 234446788888888888999988988844 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-~~~~f~i~~~~~~i~~~ 274 (488)
+.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555544 456999999999999999888 99998887665554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=127.98 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~ 147 (488)
.+...+..++....++....+++.|+.+.++.. ....+.......++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 444444444444455556667888887766532 23345555556667778899999999998 99999988887776
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
++.+++++. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 665554432 133445555556666666666667889999999887 9
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 011358 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 228 ~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
++..++ ++.+..+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999888 5778889999999999999888888888888777777766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=117.00 Aligned_cols=181 Identities=9% Similarity=-0.006 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (488)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ 151 (488)
.......+......+.+.. ...++.+..+.+............+...++.++++++.||+ |||+.+..+.....++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLY-YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHh-cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3333333333333433443 44455567788877777777777788889999999999998 999999998888777766
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHH
Q 011358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (488)
Q Consensus 152 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (488)
.+....... .+ .......+..+..+++ .+..+..+.+.+|.||.+. |+++.
T Consensus 358 ~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~ 408 (491)
T 4gc0_A 358 SLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKAL 408 (491)
T ss_dssp HHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred HHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHH
Confidence 665442210 00 1122222222222222 2334667789999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHhcccc
Q 011358 232 NFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (488)
Q Consensus 232 ~~~~~~~~iG~~i~~~i~~~i~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (488)
++.+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|+.
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999999999998887766643 23555677777777777776666655543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=121.54 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHHH
Q 011358 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI 145 (488)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~-----i~~~~ 145 (488)
.+.+.+..++....+.....+++.|+.+.++.+....+.......++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455555555566666777888999888888866677777777888888899999999997 9876544 55555
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhh
Q 011358 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (488)
Q Consensus 146 ~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (488)
..++.+++........ ++...+...++++.++.+++.+...+...++..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 5555554444311000 0001234556677788899999888999999999999998
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 011358 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (488)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 282 (488)
|+++.++++...++|..+++.+.+++.+. ++.+.|++.+++.+++.++.++..++
T Consensus 420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888654 66677777777766666665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-09 Score=108.83 Aligned_cols=164 Identities=12% Similarity=-0.095 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~-~~ 147 (488)
|.++...+..++.....+++..+++.|+++.+|++..+++.......++..++.++.|+++||+ |++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777777888888888999999888999999999999999999999999999999997 772 2233222 22
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhH
Q 011358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (488)
Q Consensus 148 lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (488)
.+..++..... + ..+.+.+++..++.+++.+...+...++..|.+| +. |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245556677778889999889999999999987 55 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 011358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (488)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~ 266 (488)
++..++++...++|..++|.+.+++.+..+|...+++.+
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988778887776643
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-06 Score=91.43 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ch-----
Q 011358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (488)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~--g~----- 258 (488)
+...++++.++.|++.+...+...++..|.+|++. |+++.++++...++|+.++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34556667788899999888999999999999988 999999999999999999999999887632 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc
Q 011358 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 259 ----~~~f~i~~~~~~i~~~~~~~~~~ 281 (488)
...|++.+++.+++.+++++..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22366666666666555544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.73 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.56 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.31 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.8e-16 Score=159.75 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=132.2
Q ss_pred HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 011358 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (488)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~ 169 (488)
+.+..++. ++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++++.....
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 34455665 5899999999999999999999999999999998 999999999999888888877652210
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011358 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~ 249 (488)
.+...+++++++.|++.|...+...++++|.+|+++ |+..+++++.+.++|..+++.+.
T Consensus 114 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 114 ---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp ---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhh
Confidence 245678889999999999999999999999999888 99999999999999999999988
Q ss_pred HHHhhc-cchHHHHHHHHHHHHHHHHHHHHh
Q 011358 250 VYIQME-HGWGSAFGALAIAMGISNMLFFIG 279 (488)
Q Consensus 250 ~~i~~~-~g~~~~f~i~~~~~~i~~~~~~~~ 279 (488)
+.+... .+|++.|++.+++.++..++.+..
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 876654 479999888777666555554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=6.7e-14 Score=137.60 Aligned_cols=180 Identities=12% Similarity=-0.092 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 011358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (488)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~l 148 (488)
|..|.+.+..++..+.+..+...++.|+++++|+|.++.+++.+++.++..++.+++|+++||+ |||+++.++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4577888888887777777778889999999999999999999999999999999999999998 999999999888877
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHh
Q 011358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (488)
Q Consensus 149 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (488)
+.+++.+..... ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 777766642100 011122233333333333333333333222222221 1244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
...+........+..+++.+++++.+. +|+..+........+..+..++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence 555666677788888999888888664 4555555544444444444433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.1e-13 Score=132.95 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=139.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 011358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (488)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~ 146 (488)
+.+.++.+....++.....+++..+++.|+.+.++++..+++.......+...++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345677788888888888889999999999999999999999999999999999999999999997 8765444333332
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhh
Q 011358 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (488)
Q Consensus 147 ~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (488)
.+..+.+..... .+. .+....++..++.|++.++..+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 376 (447)
T d1pw4a_ 326 TLVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 376 (447)
T ss_dssp HHHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 222222222111 011 245666677777888888888888999999999887
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 011358 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (488)
Q Consensus 227 r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~g~~~~f~i~~~~~~i~~~~~~~ 278 (488)
|+++.++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.++...
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777 56678999999999999999998877766666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.9e-12 Score=125.55 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=119.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 011358 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (488)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~i~i~~~~~~lg~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (488)
.+....+.......++..++..+.+++.||+ ||++.+.++.++..++.+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------------------------- 309 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA------------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred cchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-------------------------
Confidence 3445566667777788889999999999998 99999999988888877766654
Q ss_pred cchhhHHHHHHHHHHHHHhccccccchhhhhhhcCCCCCchhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHhhccchHH
Q 011358 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWGS 260 (488)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~iG~~i~~~i~~~i~~~~g~~~ 260 (488)
.+.+.+++..++.|++.+...+...+++.|.+|++. |++.+++. .....+|..++|.+.|++.+..||+.
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 245667777788899999999999999999999988 99999985 56778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 011358 261 AFGALAIAMGISNMLFFIGTP 281 (488)
Q Consensus 261 ~f~i~~~~~~i~~~~~~~~~~ 281 (488)
.|++.+++.+++.++.++..+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999887777666666555543
|