Citrus Sinensis ID: 011365
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.827 | 0.806 | 0.626 | 1e-133 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.800 | 0.711 | 0.342 | 5e-59 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.790 | 0.702 | 0.338 | 4e-57 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.790 | 0.702 | 0.338 | 7e-57 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.790 | 0.702 | 0.338 | 8e-57 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.739 | 0.692 | 0.329 | 1e-55 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.798 | 0.709 | 0.339 | 5e-53 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.794 | 0.706 | 0.339 | 2e-52 | |
| Q8N434 | 492 | Putative transporter SVOP | no | no | 0.747 | 0.739 | 0.290 | 6e-42 | |
| Q6PDF3 | 494 | Putative transporter SVOP | no | no | 0.782 | 0.771 | 0.279 | 5e-41 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/418 (62%), Positives = 315/418 (75%), Gaps = 15/418 (3%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGF+ITA+VT AG LSAF+PNY L+ RCLVGLGLGGGPVLASW+LEFIPAP+RG W
Sbjct: 90 RKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTW 149
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI EA +AWLVMPRLGWRWLL S+ PSSLLLL Y T ESPRYL L+G
Sbjct: 150 MVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQG 209
Query: 187 RTAEARHVLEKIAKINGTKLPSG-NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 245
R AEA +LEKIA++N T+LP G +NK++ + ++T + ++
Sbjct: 210 RKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPT-----ENTHLLKAGESGEA 264
Query: 246 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLT 305
++ +K + D + LL LLSP L+K TLLLW+VFFGNAF+YYG+VLLT
Sbjct: 265 VAVSKIVLKADKEPGFS---------LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLT 315
Query: 306 TELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
TELNN N+C E Q S D+NY DVFI SFAEFPGLL++AAMVDRLGRK SM+SM F
Sbjct: 316 TELNNSHNRCYPTEKQLRNSNDVNYRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLF 375
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
CCIFL+PLL Q +TT LLFG RICI+ FTVVY+YAPEIYPT+VRTTGVGV SS+G
Sbjct: 376 TCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVG 435
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSK 483
RIGG++CPLVAV LVHGCHQT A++LFE+VIL+SGI V LFPFET+GR L+DS+ +SK
Sbjct: 436 RIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASK 493
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 225/456 (49%), Gaps = 66/456 (14%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS SL+G + + R G I+ I T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFIGMMASS---SLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P +R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P L +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------VSRQED------RGKIRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L SP+ +TLLLW ++F NAFSYYGLVLLTTEL + C +SN+ ++ K +
Sbjct: 308 --LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGL 382
+Y D+ T+ +EFPGLL+ ++DR+GRK +M+ F + L + +
Sbjct: 366 EYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNV 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442
T LF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A ++
Sbjct: 426 LTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 443 CHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
L+ + +L+ ++ P ET GRGL +S
Sbjct: 486 SIYLTVLV-YSGCCVLAAVASCFLPIETKGRGLQES 520
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Xenopus laevis (taxid: 8355) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 230/461 (49%), Gaps = 76/461 (16%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS +L+G + + + G I+ + T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFVGMMSSS---TLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P L +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------ISRQED------RGKMRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 --LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF----FCCCIFLVPLLFQQ 378
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F FC + + +
Sbjct: 366 EYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICV---- 421
Query: 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-V 437
+ + T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V
Sbjct: 422 GRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481
Query: 438 ALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
L + T L ++ LL+ ++ P ET GRGL +S
Sbjct: 482 MLESSVYLT--LAVYSGCCLLAALASCFLPIETKGRGLQES 520
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Bos taurus (taxid: 9913) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 230/461 (49%), Gaps = 76/461 (16%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS +L+G + + + G I+ + T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFVGMMSSS---TLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P L +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------ISRQED------RGKMRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 --LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF----FCCCIFLVPLLFQQ 378
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F FC + + +
Sbjct: 366 EYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICV---- 421
Query: 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-V 437
+ + T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V
Sbjct: 422 GRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481
Query: 438 ALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
L + T L ++ LL+ ++ P ET GRGL +S
Sbjct: 482 MLESSVYLT--LAVYSGCCLLAALASCFLPIETKGRGLQES 520
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Pongo abelii (taxid: 9601) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 230/461 (49%), Gaps = 76/461 (16%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS +L+G + + + G I+ + T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFVGMMSSS---TLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P L +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------ISRQED------RGKMRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 --LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF----FCCCIFLVPLLFQQ 378
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F FC + + +
Sbjct: 366 EYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICV---- 421
Query: 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-V 437
+ + T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V
Sbjct: 422 GRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQV 481
Query: 438 ALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
L + T L ++ LL+ ++ P ET GRGL +S
Sbjct: 482 MLESSVYLT--LAVYSGCCLLAALASCFLPIETKGRGLQES 520
|
Homo sapiens (taxid: 9606) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/434 (32%), Positives = 212/434 (48%), Gaps = 74/434 (17%)
Query: 59 FGRLLLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFI 118
FGR RKG + +V G++S +P++Y+LLFFR L G G+GG P + + EF+
Sbjct: 146 FGR-----RKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFL 200
Query: 119 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES 178
P R +V+ ++FW +G + EA +A+ VM GWR L+ LS+ P + + PES
Sbjct: 201 PTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPES 260
Query: 179 PRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 238
R+ G A L+ A++N +LP+G LVS
Sbjct: 261 ARFDMASGHPERALETLQAAARMNRVQLPTGRLVS------------------------- 295
Query: 239 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSY 298
ST A S G A LLSP+L K+T+LLW ++ AFSY
Sbjct: 296 --------------------STKAGSESRGDIA--NLLSPDLRKTTILLWCIWAITAFSY 333
Query: 299 YGLVLLTTELNNGQNKCVSNELQSGKSRDI-------NYGDVFITSFAEFPGLLLAAAMV 351
YG+VL TT L ++C +G ++ +Y D+ T+ AEFPGL++ ++
Sbjct: 334 YGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLII 393
Query: 352 DRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPT 411
+ GRK +M+ + IF L F + T L+F AR I+ F YVY PE+YPT
Sbjct: 394 EWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPT 453
Query: 412 SVRTTGVGVASSIGRIGGMVCPLVA-------VALVHGCHQTAALILFELVILLSGISVL 464
++R G+G S++ RIG +V P +A ++L G + TAA +L I+ L
Sbjct: 454 TLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAA--------ILGLIASL 505
Query: 465 LFPFETTGRGLSDS 478
P ET GR + DS
Sbjct: 506 SLPIETKGRQMMDS 519
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 227/457 (49%), Gaps = 68/457 (14%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS +L+G + + + G I+ + T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFIGMMSSS---TLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P L +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------ISRQED------RGKMRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 --LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGL 382
+Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F + + L + +
Sbjct: 366 EYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNV 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 442 GCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
+ T L ++ LL+G++ P ET GR L +S
Sbjct: 486 SVYLT--LAVYSGCCLLAGVASCFLPIETKGRALQES 520
|
Mus musculus (taxid: 10090) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 226/459 (49%), Gaps = 72/459 (15%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYL 92
SW L ++ F SS +L+G + + + G I+ T G+LSAFAP Y
Sbjct: 119 SWQVALLTSVVFIGMMSSS---TLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSW 175
Query: 93 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152
+L R LVG G+GG P + + EF+P R +++ + FW +GT+ E +A VMP L
Sbjct: 176 ILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSL 235
Query: 153 GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212
GWRWLL LSA P + +L PES RY L G +A L++IA NG +P G L+
Sbjct: 236 GWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295
Query: 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272
++R ED K D
Sbjct: 296 --------------------------ISRQED------RGKMRD---------------- 307
Query: 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR----- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 --LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLAC 365
Query: 327 ----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPK 380
+Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L +
Sbjct: 366 EYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLL--LFICIGR 423
Query: 381 GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VAL 439
+ T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 424 NVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483
Query: 440 VHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
+ T L ++ LL+ ++ P ET GR L +S
Sbjct: 484 ESSVYLT--LAVYSGCCLLAALASCFLPIETKGRALQES 520
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 208/444 (46%), Gaps = 80/444 (18%)
Query: 58 LFGRLLLSFRKG----FLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG---GPVL 110
LFG LL+ R G LI+ + + LL++FAP+Y +F R +VG G+ G G ++
Sbjct: 103 LFG--LLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLII 160
Query: 111 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL 170
+ EF+P RG+ + + Q FW G++L G+A +++P +GWRWL+ +++ P +L++
Sbjct: 161 KT---EFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIV 217
Query: 171 LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 230
+ PES R+ G T A LE++AK+N + +P G LV E L+ +
Sbjct: 218 AFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLV---EPVLEKR-------- 266
Query: 231 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLV 290
R D LL + +++TL +W++
Sbjct: 267 ---------GRFAD------------------------------LLDAKYLRTTLQIWVI 287
Query: 291 FFGNAFSYYGLVLLTTEL--------NNGQNKCVSNELQSGKSRDINYGDVF-------- 334
+ G +F+YYG++L + EL + + V SG+S+ Y +F
Sbjct: 288 WLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTM 347
Query: 335 -ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARIC 393
I++ E L ++ LGR+LS+S C +F + L G LF R
Sbjct: 348 IISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRAL 407
Query: 394 ITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFE 453
+ F VY+Y E+YPT++R G+G + S+ RIG MV P ++ L+ AL LF
Sbjct: 408 VAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLMSA-SILGALCLFS 466
Query: 454 LVILLSGISVLLFPFETTGRGLSD 477
V ++ IS P ET GR L
Sbjct: 467 SVCVVCAISAFTLPIETKGRALQQ 490
|
Homo sapiens (taxid: 9606) |
| >sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 211/472 (44%), Gaps = 91/472 (19%)
Query: 35 SWNTTTLLNLHFSESDQSSFSFSL----FGR---LLLSFRKGFLITAIVTSAAGLLSAFA 87
+W + + F SS F L +GR LLLSF G + LL++F+
Sbjct: 83 NWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFS--------LLTSFS 134
Query: 88 PNYYLLLFFRCLVGLGLGG---GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI 144
P+Y +F R +VG G+ G G ++ + EF+P RG+ + + Q FW G++L +
Sbjct: 135 PSYIWFVFLRTMVGCGVSGHAQGLIIKT---EFLPTKYRGYMLPLSQVFWLAGSLLIISM 191
Query: 145 AWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204
A +V+P +GWRWL+ +++ P +L++ + PES R+ G T A + LE IAK+N +
Sbjct: 192 ASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRS 251
Query: 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANS 264
+P G LV E L+ + R D
Sbjct: 252 VMPEGQLV---EPILEKR-----------------GRFAD-------------------- 271
Query: 265 NMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL----------NNGQNK 314
LL + +++TL +W+++ G +F+YYG++L + EL + + +
Sbjct: 272 ----------LLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPE 321
Query: 315 CVSNELQSGKSRDINYGDVF---------ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
V SG+ Y +F I++ E L ++ LGR+LS+S
Sbjct: 322 VVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMG 381
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
C +F + L G LF R + F +Y+Y E+YPT +R G+G + S+
Sbjct: 382 CTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLC 441
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSD 477
RIG MV P ++ L+ AL LF V ++ IS P ET GR L
Sbjct: 442 RIGAMVAPFISQVLMSASF-LGALCLFSSVCVVCAISAFTLPIETKGRALQQ 492
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 225443470 | 495 | PREDICTED: synaptic vesicle 2-related pr | 0.829 | 0.816 | 0.719 | 1e-154 | |
| 356523480 | 558 | PREDICTED: synaptic vesicle 2-related pr | 0.796 | 0.695 | 0.657 | 1e-149 | |
| 357467655 | 499 | Synaptic vesicle 2-related protein [Medi | 0.815 | 0.795 | 0.658 | 1e-144 | |
| 147767934 | 461 | hypothetical protein VITISV_042940 [Viti | 0.759 | 0.802 | 0.686 | 1e-143 | |
| 224095100 | 463 | predicted protein [Populus trichocarpa] | 0.765 | 0.805 | 0.604 | 1e-141 | |
| 242039569 | 491 | hypothetical protein SORBIDRAFT_01g02099 | 0.811 | 0.804 | 0.600 | 1e-139 | |
| 222629519 | 424 | hypothetical protein OsJ_16102 [Oryza sa | 0.843 | 0.969 | 0.596 | 1e-139 | |
| 218195538 | 529 | hypothetical protein OsI_17329 [Oryza sa | 0.806 | 0.742 | 0.607 | 1e-139 | |
| 38567900 | 588 | OSJNBa0060N03.20 [Oryza sativa Japonica | 0.806 | 0.668 | 0.607 | 1e-139 | |
| 90265074 | 489 | H0702G05.6 [Oryza sativa Indica Group] | 0.806 | 0.803 | 0.607 | 1e-139 |
| >gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/421 (71%), Positives = 348/421 (82%), Gaps = 17/421 (4%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGFLITA+VTSAAG LSAFAPNY L+ RCLVGLGLGGGPVL+SWFLEFIPAPNRG W
Sbjct: 90 RKGFLITAVVTSAAGFLSAFAPNYISLIILRCLVGLGLGGGPVLSSWFLEFIPAPNRGTW 149
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MVIF FWTVGTILEA +AW VMP LGWRWLL LSA PS LLL+ Y VTPESPRYLCLKG
Sbjct: 150 MVIFSGFWTVGTILEASLAWCVMPTLGWRWLLALSALPSLLLLIFYRVTPESPRYLCLKG 209
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
RT EA VLEKIA++N +LP G LVSD H++ +S+ +ED K ++ + DS
Sbjct: 210 RTTEALSVLEKIARMNRAELPPGILVSD--HQVGVPE--NSNPSEDM---KLLSPEADSG 262
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
S K++ +SNMGGI++L +LLSP+L++STLLLW+VFFGNAFSYYGLVLLT+
Sbjct: 263 SSHKDI----------DSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTS 312
Query: 307 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366
ELNN QNKC ELQS K++DINY DVFITSFAEFPGLLL+AA VD LGRKLSMS+MFF
Sbjct: 313 ELNNEQNKCGVAELQSEKTQDINYKDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFFL 372
Query: 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR 426
CCIFL+PL+F QP+GLTT LLFGARICITVTFTVVY+YAPEIYPTSVRTTGVGVASS+GR
Sbjct: 373 CCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGR 432
Query: 427 IGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSKLIN 486
IGGM+CPLVAV LVHGCHQ AA+ILFE+VI +SGI V+LFPFET GR L D+L SS+ +N
Sbjct: 433 IGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTLSSSEQVN 492
Query: 487 T 487
+
Sbjct: 493 S 493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523480|ref|XP_003530366.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/420 (65%), Positives = 331/420 (78%), Gaps = 32/420 (7%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGFLITA VT+ AG LSAFAPNY L+ R LVG+GLGGGPVL+SWFLEF+PAPNRG W
Sbjct: 162 RKGFLITATVTALAGFLSAFAPNYIFLIVLRSLVGIGLGGGPVLSSWFLEFVPAPNRGTW 221
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWT+GTI EA +AW+VMP+LGWRWLL LS+ P+S LLL Y VTPESPRYLCLKG
Sbjct: 222 MVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLPTSFLLLFYKVTPESPRYLCLKG 281
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL-------QNKSLLSSSSNEDDTTPKEM 239
RTA+A +VLEKIA++NG +LPSG LVS+ E EL ++ LLS +NED+ PK +
Sbjct: 282 RTADAINVLEKIARVNGRELPSGILVSEHEIELHKIDNPTEDARLLSPRTNEDEH-PKGI 340
Query: 240 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYY 299
SN+G I++LL+LLSP+L +STLLLW VFFGNAFSYY
Sbjct: 341 V-----------------------SNLGAISSLLVLLSPKLARSTLLLWAVFFGNAFSYY 377
Query: 300 GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS 359
GLVLLTTELN G +KC+S++LQ+ KS+D+ Y VFI SFAE PGLLL+AA VD+LGRKLS
Sbjct: 378 GLVLLTTELN-GHSKCMSDKLQTEKSQDVRYKSVFIASFAELPGLLLSAAAVDKLGRKLS 436
Query: 360 MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVG 419
MS MFF CCIFL+PLLF P+GLTT LF ARICIT TFT+VY+YAPE+YPTSVRTTGVG
Sbjct: 437 MSIMFFMCCIFLLPLLFYLPEGLTTSFLFLARICITATFTIVYIYAPEMYPTSVRTTGVG 496
Query: 420 VASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 479
+ASS+GRIGGM+CPLVAV LVHGCHQTAA++LFE+V L+SGI V+ FP ET G+ L +++
Sbjct: 497 IASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIVSLVSGICVMFFPIETMGQELRNNV 556
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/419 (65%), Positives = 327/419 (78%), Gaps = 22/419 (5%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGFLITA VT+ AG S+ +PNY LL FR LVGLGLGGGPVL+SWFLEF+PAPNRG W
Sbjct: 96 RKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTW 155
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI EA +AW+VMPRLGWRWLL LS+ P+S LLL Y +TPESPRYLCLKG
Sbjct: 156 MVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKG 215
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT--TPKEMARDED 244
RT EA VLE I+++NG KLPSG LVSD + ELQ + +ED +P+
Sbjct: 216 RTTEAIDVLETISRLNGKKLPSGVLVSDNQIELQKID----NPSEDTVLLSPR------- 264
Query: 245 SISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLL 304
KSE + SN+GGI++L +LLSP+L +STLLLW VFFGNAFSYYGLVLL
Sbjct: 265 --------KSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLL 316
Query: 305 TTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364
T+EL +KC+ ++LQ+ KS+D++Y VFI SFAE PGLLL+A VD+LGRKLSMS MF
Sbjct: 317 TSELKR-NSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMF 375
Query: 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSI 424
F CCIFL+PL F P+ LTTGLLFGARICITVTFT+VY+YAPEIYPTSVRTTGVGVASS+
Sbjct: 376 FMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSV 435
Query: 425 GRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSK 483
GRIGGM+CPLVAV LVHGCHQTAA++LF +V L+SGI V+ FPFET G+ L D++ S K
Sbjct: 436 GRIGGMLCPLVAVGLVHGCHQTAAVLLFIIVALVSGICVVFFPFETMGQELQDTVSSIK 494
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767934|emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/421 (68%), Positives = 326/421 (77%), Gaps = 51/421 (12%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGFLITA+VTSAAG LSAFAPNY L+ RCLVGLGLGGGPVL+SWFLEFIPAPNRG W
Sbjct: 90 RKGFLITAVVTSAAGFLSAFAPNYISLIILRCLVGLGLGGGPVLSSWFLEFIPAPNRGTW 149
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MVIF FWTVGTILEA +AW VMP LGWRWLL LSA PS LLL+ Y VTPESPRYLCLKG
Sbjct: 150 MVIFSGFWTVGTILEASLAWCVMPTLGWRWLLALSALPSLLLLIFYRVTPESPRYLCLKG 209
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
RT EA L++ LLS + DS
Sbjct: 210 RTTEA---------------------------LKDMKLLSP--------------EADSG 228
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
S K++ +SNMGGI++L +LLSP+L++STLLLW+VFFGNAFSYYGLVLLT+
Sbjct: 229 SSHKDI----------DSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTS 278
Query: 307 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366
ELNNGQNKC ELQS K++DINY DVFITSFAEFPGLLL+AA VD LGRKLSMS+MFF
Sbjct: 279 ELNNGQNKCGVAELQSEKTQDINYKDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFFL 338
Query: 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR 426
CCIFL+PL+F QP+GLTT LLFGARICITVTFTVVY+YAPEIYPTSVRTTGVGVASS+GR
Sbjct: 339 CCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGR 398
Query: 427 IGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSKLIN 486
IGGM+CPLVAV LVHGCHQ AA+ILFE+VI +SGI V+LFPFET GR L D+L SS+ +N
Sbjct: 399 IGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTLSSSEQVN 458
Query: 487 T 487
+
Sbjct: 459 S 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/417 (60%), Positives = 302/417 (72%), Gaps = 44/417 (10%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
RKGF +TAI+TS AG LSAFAPNY LL RCLVG G+GGGPVL +WFLEF+PAPNRG W
Sbjct: 90 RKGFFVTAIMTSVAGFLSAFAPNYIALLISRCLVGFGIGGGPVLLAWFLEFVPAPNRGTW 149
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI E G+AW++MPRLGWRWLL LSA PS LLL+ Y++TPESPRYLCLKG
Sbjct: 150 MVVFSAFWTVGTIFEGGLAWIIMPRLGWRWLLALSALPSFLLLVFYTLTPESPRYLCLKG 209
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
R EA +L+KIAK+NG +LP G +V+ E ELQ + L
Sbjct: 210 RKNEALIILKKIAKLNGKELPPGVVVAGNEIELQGNNHLPE------------------- 250
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
+LI+ SP L++STLLLW+V F NAFSYYGLVLLTT
Sbjct: 251 -------------------------MLIIFSPRLVRSTLLLWVVIFANAFSYYGLVLLTT 285
Query: 307 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366
ELN+ N C + QS K +INY VFITSFAEFPGL+L+A ++DRLGRKLSM++MFF
Sbjct: 286 ELNDRSNTCHQTKKQSQKPANINYKQVFITSFAEFPGLILSALVIDRLGRKLSMAAMFFV 345
Query: 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR 426
CCIFL+PL+ Q G+TT LLFGAR CIT TFT+VY+YAPE+YPT +RTTGVGVASS+ R
Sbjct: 346 CCIFLLPLVVHQSTGVTTTLLFGARTCITGTFTIVYIYAPELYPTFMRTTGVGVASSVSR 405
Query: 427 IGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSK 483
IGGMVCPLVAV+LV GCHQTAA++ F ++ ++GI VLLFPFET G L+DSL +K
Sbjct: 406 IGGMVCPLVAVSLVQGCHQTAAVVFFASIVFVAGICVLLFPFETKGLDLADSLSGTK 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/413 (60%), Positives = 312/413 (75%), Gaps = 18/413 (4%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
R+GFL TAIVTS AG LSAFAPNY L+ R LVG+GLGGGPVL SWFLEF+PAP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLVGIGLGGGPVLGSWFLEFVPAPTRGTW 150
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTILEA +AW VMP+ GWRWLL LSA PS LLLL Y++TPESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTILEASLAWTVMPKFGWRWLLALSAIPSFLLLLFYAITPESPRFLCMKG 210
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
RT EA VLEK+A++N +LPSG LVSD +N L S + + TT A + D++
Sbjct: 211 RTTEAVDVLEKMARLNNVQLPSGRLVSD-----KNIELDEVSGSSESTTLLSGAEESDNL 265
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
SE + S+ GGI ++ LL+P+LI++TLLLW+ FFGNAF+YYG+VLLT+
Sbjct: 266 SEDR------------GSDFGGIKSVGKLLAPKLIRATLLLWMAFFGNAFAYYGIVLLTS 313
Query: 307 ELNNGQNKCVSNELQSGKSRDIN-YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
EL+NG C +++S S + + Y +VFI+SFAE PG L+A +VDR GRKLSM+SM F
Sbjct: 314 ELSNGNRICAKQDVESVNSTNASLYKNVFISSFAEIPGSFLSAMIVDRFGRKLSMASMLF 373
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
C+FLVPL+F + LT LFGAR+CI+ +FT+VY+YAPEIYPT+VRTTG+G+ASS+G
Sbjct: 374 TSCVFLVPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEIYPTAVRTTGIGIASSVG 433
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
RIGG++CPLVAVALVH C QT A++LFELVI LSG++V FPFET G L+D+
Sbjct: 434 RIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 486
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/434 (59%), Positives = 320/434 (73%), Gaps = 23/434 (5%)
Query: 48 ESDQSSFSFSLFGRLLLSF--RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG 105
E DQS+ ++S+ LL S R+GFL TAIVTS AG LSAFAPNY L+ R LVG+GLG
Sbjct: 6 EEDQSA-TYSVDDALLSSGFGRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLG 64
Query: 106 GGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 165
GGPVLASWFLEF+PAP RG WMV+F FWTVGTI EA +AW VMP+ GWRWLL LSA PS
Sbjct: 65 GGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPS 124
Query: 166 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLL 225
+LLL Y +TPESPR+LC+KGR EA VLEK+A++N +LPSG LVSD EL
Sbjct: 125 FVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDEL--- 181
Query: 226 SSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 285
S + TT A ++D+I E K S+ GG++ + LLSP+LI++TL
Sbjct: 182 ---STSESTTLLADAEEDDTIIEDKV------------SSFGGLS-VAKLLSPKLIRATL 225
Query: 286 LLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVFITSFAEFPGL 344
LLW+ FFGNAFSYYG+VLLT+EL+NG C E++S S D + Y +VFI+SFAE PG
Sbjct: 226 LLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGS 285
Query: 345 LLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY 404
L+A +VDR+GRKLSM+SM F C+FL PL+F + LT LFGAR+CI+ +FT+VY+Y
Sbjct: 286 FLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIY 345
Query: 405 APEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVL 464
APEIYPTSVRTTG+GVASS+GRIGG++CPLVAVALVH C QT A++LFELVI LSG++V
Sbjct: 346 APEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVS 405
Query: 465 LFPFETTGRGLSDS 478
FPFET G L+D+
Sbjct: 406 FFPFETKGCRLNDT 419
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/413 (60%), Positives = 308/413 (74%), Gaps = 20/413 (4%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
R+GFL TAIVTS AG LSAFAPNY L+ R LVG+GLGGGPVLASWFLEF+PAP RG W
Sbjct: 131 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 190
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI EA +AW VMP+ GWRWLL LSA PS +LLL Y +TPESPR+LC+KG
Sbjct: 191 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 250
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
R EA VLEK+A++N +LPSG LVSD EL S + TT A ++D+I
Sbjct: 251 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDEL------STSESTTLLADAEEDDTI 304
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
E K S+ GG++ + LLSP+LI++TLLLW+ FFGNAFSYYG+VLLT+
Sbjct: 305 IEDKV------------SSFGGLS-VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTS 351
Query: 307 ELNNGQNKCVSNELQSGKSRDIN-YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
EL+NG C E++S S D + Y +VFI+SFAE PG L+A +VDR+GRKLSM+SM F
Sbjct: 352 ELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLF 411
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
C+FL PL+F + LT LFGAR+CI+ +FT+VY+YAPEIYPTSVRTTG+GVASS+G
Sbjct: 412 TSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVG 471
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
RIGG++CPLVAVALVH C QT A++LFELVI LSG++V FPFET G L+D+
Sbjct: 472 RIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 524
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/413 (60%), Positives = 308/413 (74%), Gaps = 20/413 (4%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
R+GFL TAIVTS AG LSAFAPNY L+ R LVG+GLGGGPVLASWFLEF+PAP RG W
Sbjct: 190 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 249
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI EA +AW VMP+ GWRWLL LSA PS +LLL Y +TPESPR+LC+KG
Sbjct: 250 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 309
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
R EA VLEK+A++N +LPSG LVSD EL S + TT A ++D+I
Sbjct: 310 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDEL------STSESTTLLADAEEDDTI 363
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
E K S+ GG++ + LLSP+LI++TLLLW+ FFGNAFSYYG+VLLT+
Sbjct: 364 IEDKV------------SSFGGLS-VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTS 410
Query: 307 ELNNGQNKCVSNELQSGKSRDIN-YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
EL+NG C E++S S D + Y +VFI+SFAE PG L+A +VDR+GRKLSM+SM F
Sbjct: 411 ELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLF 470
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
C+FL PL+F + LT LFGAR+CI+ +FT+VY+YAPEIYPTSVRTTG+GVASS+G
Sbjct: 471 TSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVG 530
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
RIGG++CPLVAVALVH C QT A++LFELVI LSG++V FPFET G L+D+
Sbjct: 531 RIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 583
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/413 (60%), Positives = 308/413 (74%), Gaps = 20/413 (4%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFW 126
R+GFL TAIVTS AG LSAFAPNY L+ R LVG+GLGGGPVLASWFLEF+PAP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 150
Query: 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186
MV+F FWTVGTI EA +AW VMP+ GWRWLL LSA PS +LLL Y +TPESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 210
Query: 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSI 246
R EA VLEK+A++N +LPSG LVSD EL S + TT A ++D+I
Sbjct: 211 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDEL------STSESTTLLADAEEDDTI 264
Query: 247 SEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306
E K S+ GG++ + LLSP+LI++TLLLW+ FFGNAFSYYG+VLLT+
Sbjct: 265 IEDKV------------SSFGGLS-VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTS 311
Query: 307 ELNNGQNKCVSNELQSGKSRDIN-YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365
EL+NG C E++S S D + Y +VFI+SFAE PG L+A +VDR+GRKLSM+SM F
Sbjct: 312 ELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLF 371
Query: 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425
C+FL PL+F + LT LFGAR+CI+ +FT+VY+YAPEIYPTSVRTTG+GVASS+G
Sbjct: 372 TSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVG 431
Query: 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS 478
RIGG++CPLVAVALVH C QT A++LFELVI LSG++V FPFET G L+D+
Sbjct: 432 RIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.819 | 0.798 | 0.560 | 8.4e-113 | |
| ZFIN|ZDB-GENE-070705-359 | 411 | svopb "SV2 related protein hom | 0.422 | 0.501 | 0.382 | 2.3e-48 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.410 | 0.414 | 0.373 | 3.7e-48 | |
| ZFIN|ZDB-GENE-060526-336 | 549 | svopa "SV2 related protein hom | 0.414 | 0.367 | 0.383 | 7.9e-48 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.410 | 0.364 | 0.373 | 3e-47 | |
| UNIPROTKB|F1NIB3 | 554 | SVOP "Uncharacterized protein" | 0.414 | 0.364 | 0.362 | 3.4e-47 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.410 | 0.365 | 0.373 | 5.2e-47 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.410 | 0.364 | 0.373 | 5.3e-47 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.410 | 0.364 | 0.373 | 7.1e-47 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.410 | 0.364 | 0.373 | 1.5e-46 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 231/412 (56%), Positives = 273/412 (66%)
Query: 72 ITAIVTSAAGLLSAFAPNYYXXXXXXXXXXXXXXXXXXXASWFLEFIPAPNRGFWMVIFQ 131
ITA+VT AG LSAF+PNY ASW+LEFIPAP+RG WMV+F
Sbjct: 95 ITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFS 154
Query: 132 TFWTVGTILEAGIAWLVMPRLGWRWXXXXXXXXXXXXXXXXXVTPESPRYLCLKGRTAEA 191
FWTVGTI EA +AWLVMPRLGWRW T ESPRYL L+GR AEA
Sbjct: 155 AFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEA 214
Query: 192 RHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPKEMARDEDSISEAKE 251
+LEKIA++N T+LP G L S+ E EL+ E+ P E + E+ E
Sbjct: 215 LAILEKIARMNKTQLPPGVLSSELETELE----------ENKNIPTENTHLLKA-GESGE 263
Query: 252 MKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNG 311
+ A+ G +LL LLSP L+K TLLLW+VFFGNAF+YYG+VLLTTELNN
Sbjct: 264 AVAVSKIVLKADKEPG--FSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNS 321
Query: 312 QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371
N+C E Q S D+NY DVFI SFAEFPGLL++AAMVDRLGRK SM+SM F CCIFL
Sbjct: 322 HNRCYPTEKQLRNSNDVNYRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFL 381
Query: 372 VPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMV 431
+PLL Q +TT LLFG RICI+ FTVVY+YAPEIYPT+VRTTGVGV SS+GRIGG++
Sbjct: 382 LPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGIL 441
Query: 432 CPLVAVALVHGCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDSLPSSK 483
CPLVAV LVHGCHQT A++LFE FPFET+GR L+DS+ +SK
Sbjct: 442 CPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASK 493
|
|
| ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 83/217 (38%), Positives = 119/217 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV---SN-ELQSG---KSRD 327
L PE ++TLL+W ++F +AF YYGLVLLTTEL + CV SN E Q +
Sbjct: 193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252
Query: 328 IN-YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGL 386
I+ Y D+ T+FAEFPGLL+A MV+R+ R+ SM F + ++PL + + T
Sbjct: 253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312
Query: 387 LFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVHGCHQ 445
+F AR I + + YVY PE++PT+ R G+G +S + R+G +V P +A V L +
Sbjct: 313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372
Query: 446 TAALILFEXXXXXXXXXXXXFPFETTGRGLSDSLPSS 482
T ++ L P ET GR L +S SS
Sbjct: 373 TLSVYLI--FGLLGTAACWALPMETEGRSLQESTQSS 407
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 81/217 (37%), Positives = 120/217 (55%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S++ ++ +++
Sbjct: 243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLL--LFICVGRNM 360
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 361 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 420
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 421 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 455
|
|
| ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 338 (124.0 bits), Expect = 7.9e-48, Sum P(2) = 7.9e-48
Identities = 82/214 (38%), Positives = 117/214 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC---VSNELQSGKSRD---I 328
L SP +T+LLW ++F NAFSYYG+VLLTTEL C ++++ G S + +
Sbjct: 308 LFSPHFRWTTVLLWFIWFSNAFSYYGVVLLTTELFQEGGVCGGAKGSKMEPGCSLECKYL 367
Query: 329 N---YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTG 385
N Y D+ T+ +EFPGLL+ +DRLGR+ +M+ FF + +VPL + T
Sbjct: 368 NSDDYKDLLWTTLSEFPGLLVTLWAIDRLGRRKTMALCFFVFSLCIVPLYSCVGRTSLTV 427
Query: 386 LLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVHGCH 444
+F AR I F YVY PE+YPT+ R G+G +S + R+G ++ P VA V L +
Sbjct: 428 FIFIARAFIAGGFQAAYVYTPEVYPTATRALGLGTSSGMARVGALITPFVAQVMLESSVY 487
Query: 445 QTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
T L ++ P ETTGRGL +S
Sbjct: 488 LT--LSVYCCCCLLAAIASCALPIETTGRGLQES 519
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 81/217 (37%), Positives = 120/217 (55%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S++ ++ +++
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLL--LFICVGRNM 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
| UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTE + C +S+ + K++
Sbjct: 314 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEY 373
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTT 384
+ +Y D+ T+ +EFPG+L+ ++DR+GRK +M+ FF + L + + T
Sbjct: 374 LTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVLT 433
Query: 385 GLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVHGC 443
LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 434 VLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSV 493
Query: 444 HQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 494 YLTLAV--YSGCCLLAAVASFFLPIETKGRGLQES 526
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 5.2e-47, Sum P(2) = 5.2e-47
Identities = 81/217 (37%), Positives = 119/217 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLL--LFICVGRNM 424
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 425 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 484
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 485 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 519
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 81/217 (37%), Positives = 119/217 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLL--LFICVGRNM 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 7.1e-47, Sum P(2) = 7.1e-47
Identities = 81/217 (37%), Positives = 119/217 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+ +Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLL--LFICVGRNV 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 81/217 (37%), Positives = 118/217 (54%)
Query: 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR------- 326
L +P +TLLLW ++F NAFSYYGLVLLTTEL + C +S+ ++ +++
Sbjct: 308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367
Query: 327 --DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF--FCCCIFLVPLLFQQPKGL 382
+Y D+ T+ +EFPG+L+ ++DRLGRK +M+ F F C L L + +
Sbjct: 368 LSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLL--LFICVGRNM 425
Query: 383 TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVH 441
T LLF AR I+ F YVY PE+YPT+ R G+G S + R+G ++ P +A V L
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485
Query: 442 GCHQTAALILFEXXXXXXXXXXXXFPFETTGRGLSDS 478
+ T A+ + P ET GRGL +S
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.6267 | 0.8275 | 0.806 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-72 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-32 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-31 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-25 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 9e-19 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-13 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 7e-12 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-11 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-11 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-06 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 2e-72
Identities = 137/422 (32%), Positives = 203/422 (48%), Gaps = 74/422 (17%)
Query: 59 FGRLLLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWF-LEF 117
FGR +K L++ +VT+ +G+L+AF+PNY + L FR LVG+G+GG V A EF
Sbjct: 154 FGR-----KKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEF 208
Query: 118 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE 177
+P R + Q F+++G +L +A+ + WRWL + P+ L LL PE
Sbjct: 209 LPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE 265
Query: 178 SPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237
SPR+L +GR EA +L++IAKING KLP+ +LS S +D
Sbjct: 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAE--------------VLSLSLEKD----- 306
Query: 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS 297
+S+ + L + +P L K+TL L +++F AFS
Sbjct: 307 ------------------------LSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS 342
Query: 298 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK 357
YYGLVL L G N Y D+FI+ E P L+ ++DRLGR+
Sbjct: 343 YYGLVLDLGNL--GGN---------------IYLDLFISGLVELPAKLITLLLIDRLGRR 385
Query: 358 LSMSSMFFC--CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415
+M++ + L+ + L T L + IT F +VY+Y E+YPT VR
Sbjct: 386 YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN 445
Query: 416 TGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGL 475
GVGV S++ R+G ++ P + L+LF + LL+GI L P ET G L
Sbjct: 446 LGVGVCSTMARVGSIISPFLVYLG--EKWLFLPLVLFGGLALLAGILTLFLP-ETKGVPL 502
Query: 476 SD 477
+
Sbjct: 503 PE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 100/438 (22%), Positives = 163/438 (37%), Gaps = 89/438 (20%)
Query: 59 FGRLLLSFRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGGPVLASWFL- 115
FGR +K LI ++ LL FA ++Y+L+ R +VGLG+GG VL ++
Sbjct: 73 FGR-----KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYIS 127
Query: 116 EFIPAPNRGFWMVIFQTFWTVGTILEAGIAW---LVMPRLGWRWLLGLSAFPSSLLLLLY 172
E P RG ++Q T G ++ A I GWR LGL P+ LLL+
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGL 187
Query: 173 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 232
PESPR+L LKG+ EAR VL AK+ G
Sbjct: 188 LFLPESPRWLVLKGKLEEARAVL---AKLRGVSDVD------------------------ 220
Query: 233 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF 292
+E+ ++DS+ + E + + + ++ L ++
Sbjct: 221 ----QEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVM---------LQIFQQLT 267
Query: 293 G-NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAE----FPGLLLA 347
G NA YY + + D + + F +A
Sbjct: 268 GINAIFYYSPTIF---------------------ETLGLSDSLLVTIIVGVVNFVFTFIA 306
Query: 348 AAMVDRLGRK----LSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTF----- 398
+VDR GR+ L + M C + L L K G++ I + + F
Sbjct: 307 IFLVDRFGRRPLLLLGAAGM-AICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGW 365
Query: 399 -TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVIL 457
V +V E++P VR + +A++ + + + + ++F +++
Sbjct: 366 GPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVFAGLLV 424
Query: 458 LSGISVLLFPFETTGRGL 475
L + V F ET GR L
Sbjct: 425 LFILFVFFFVPETKGRTL 442
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 5e-31
Identities = 98/449 (21%), Positives = 159/449 (35%), Gaps = 89/449 (19%)
Query: 14 SVLLICFAMIFCD------IAFDVPELS--WNTTTLLNLHFSESDQSSFSFSLFGRLLLS 65
+++ F ++ D + F P +S W + FS L G +
Sbjct: 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPV-------QLGFLFSAGLIGMAFGA 69
Query: 66 F----------RKGFLITAIVTSAAG-LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASW 113
R+ L+ +I+ + LL A A N LL R L GLGLGG P L +
Sbjct: 70 LFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL 129
Query: 114 FLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA-FPSSLLLLLY 172
E+ P RG + + + +G + +A ++P GWR L + P LLLLL
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189
Query: 173 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 232
PES +L K R R ++ IA +L + +
Sbjct: 190 RFLPESIDFLVSK-RPETVRRIVNAIA--------------PQMQAEAQSALPEQKATQG 234
Query: 233 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF 292
+ L + + T+LLWL++F
Sbjct: 235 ----------------------------------TKRSVFKALFQGKTARITVLLWLLYF 260
Query: 293 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD 352
Y L +L ++ G S + + +F G ++ + D
Sbjct: 261 MLLVGVYFLTNWLPKL----------MVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310
Query: 353 RLGRKLSMS-SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPT 411
RLG +++ + LV P L L A + + +Y YPT
Sbjct: 311 RLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL-LGAIAGFFVNGGQSGLYALMALFYPT 369
Query: 412 SVRTTGVGVASSIGRIGGMVCPLVAVALV 440
++R TGVG A IGR+G ++ P++A L+
Sbjct: 370 AIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 108/440 (24%), Positives = 170/440 (38%), Gaps = 78/440 (17%)
Query: 59 FGRLLLSFRKGFLITAIVTSAAGLLS---AFAPNYYLLLFFRCLVGLGLGGGPVLASWFL 115
FGR +K LI A++ +L AFA + +L+ R L+G+G+G L +L
Sbjct: 98 FGR-----KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYL 152
Query: 116 -EFIPAPNRGFWMVIFQTFWTVGTILEAGI---AWLVMPRLGWRWLLGLSAFPSSLLLLL 171
E P RG ++Q T G ++ G + LGWR LGL P+ LL L
Sbjct: 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG 212
Query: 172 YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNE 231
PESPR+L KGR EAR L A++ GT + EL ++
Sbjct: 213 LFFLPESPRWLVGKGRVEEARKSL---ARLRGTSGE--------DKELLDE--------- 252
Query: 232 DDTTPKEMARDEDSISEAKEMKSEDSTS-TLANSNMGGITALLILLSPELIKSTLLLWLV 290
+ I + E +S + +L +S L + +L W
Sbjct: 253 ---------LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL--------GVVLQWFQ 295
Query: 291 FF--GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAA 348
F NA YY + +N VS + S I F +A
Sbjct: 296 QFTGINAIMYYSPTIF-------ENAGVSTDHAFLVS--------IIVGAVNFAFTFVAI 340
Query: 349 AMVDRLGRK--LSMSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFGARICITVTF----- 398
+VDR GR+ L + + C+F++ +L ++G + I + + F
Sbjct: 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGW 400
Query: 399 -TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVIL 457
V +V EI+P S+R G+ +A + + + + ++ I F + +
Sbjct: 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV 460
Query: 458 LSGISVLLFPFETTGRGLSD 477
L I V F ET GR L +
Sbjct: 461 LGLIFVYFFLPETKGRTLEE 480
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 9e-19
Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF 125
++ LI V S+F Y LF R L G G+GG P++ S+F EF+ RG
Sbjct: 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGE 291
Query: 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG-------------LSAFPSSLLLLLY 172
+ FW +G I A +AW ++P GW + +G + AFP +
Sbjct: 292 HLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351
Query: 173 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 232
+ PESPR+ G+ EA +L+ I N + + + S + +
Sbjct: 352 TFMPESPRFFLENGKHDEAWMILKLIHDTN------------MRAKGHPEKVFSVNHIK- 398
Query: 233 DTTPKEMARDEDSISEAKEMKSEDST-----STLANSNMGGI-TALLILLSPELIKSTLL 286
T + E E++S+ T A S GGI L +PE+ + T+
Sbjct: 399 --TIHQ-------EDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK 449
Query: 287 LWLVFFGNAFSYYGL 301
L V+F +F YYGL
Sbjct: 450 LMGVWFTLSFGYYGL 464
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 266 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS 325
+ + LL LL L++ LLL L FF +F YYGL+ G S
Sbjct: 159 LAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQ---------EVLGLS 209
Query: 326 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS-MSSMFFCCCIFLVPLLFQQPKGLTT 384
+ + G LL + DRLGR+ + + L+ L L
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 385 GLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444
L + F + A E+ P R T G+ ++ G +GG + PL+A L+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Query: 445 QTAALILFELVILLSGISVLLFP 467
++ + LL+ + +LL P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 67 RKGFLITAIVT-SAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWF-LEFIPAPNRG 124
R+ ++T+IV SA L FAP Y + R ++G+G+GG ++ + +E P R
Sbjct: 76 RRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN 135
Query: 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYSVTPESPRYL 182
+ + + VG ++ A + LV+P G WR L +S P L L PE+ +
Sbjct: 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW- 194
Query: 183 CLKGRTAEARHVLEKIAKING 203
K + A V + + G
Sbjct: 195 --KEKHAGKALVRTMVDILYG 213
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 274 ILLSPELIKSTLLLWLVFFGNAFSYYGLV--LLTTELNNGQNKCVSNELQSGKSRDINYG 331
L +TLLLW+ +F Y L+ L + + G ++ + +Q N G
Sbjct: 212 ALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIA----FNIG 267
Query: 332 DVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLL--FG 389
G LL A++DRL + + ++ L L LL F
Sbjct: 268 GAL--------GSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGFA 317
Query: 390 ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAAL 449
A + + +V+Y AP YPT VR TGVG A ++GR+G M PL+A L+ T +
Sbjct: 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV 377
Query: 450 ILFEL-VILLSGISVLL 465
I + VIL++ ++ LL
Sbjct: 378 IGASIPVILVAALAALL 394
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF 125
R+ L+ ++ + LL AFA + +LLL R L+GLG G P A+ E+ P RG
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123
Query: 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 171
+ +F + +G +L + L+ LGWRWL + A LL LL
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 41/177 (23%)
Query: 57 SLFGRLLLSFRKGFLITAIVTSAAGLLSAF---------APNYYLLL---FFRCLVGLGL 104
+ FGR R I A++ + L SA+ N + +R + G+G+
Sbjct: 80 NRFGR-----RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV 134
Query: 105 GGGPVLAS-----WFLEFIPAPNRGF------WMVIFQT----FWTVGTILEAGIAWLVM 149
G LAS + E PA RG + +IF F +WL
Sbjct: 135 G----LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190
Query: 150 PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKL 206
GWR++ A P+ L L+L PE+PRYL +G+ +A +L KI G L
Sbjct: 191 --DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR---KIMGNTL 242
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF 125
R+ LI ++ + LL FA + +LLL R L GLG G P A+ ++ P RG
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121
Query: 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 171
+ + + +G L + L+ GWR + A + L +L
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL 167
|
Length = 346 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 59 FGRLLLSF------RKGFLITAIVTSAAG-LLSAFAPNYYLLLFFRCLVGLGLGG----- 106
FG LLL R+ ++ +IV + G L FAP Y+ L R ++G+G+ G
Sbjct: 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSS 129
Query: 107 -GPVLASWFLEFIPAPNR----GFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 161
V+ SW P R GF + F ++G ++ A + LV+P GWR L +
Sbjct: 130 ATYVIESW-----PKHLRNKASGFLISGF----SIGAVVAAQVYSLVVPVWGWRALFFIG 180
Query: 162 AFPSSLLLLLYSVTPES 178
P L L PE+
Sbjct: 181 ILPIIFALWLRKNLPEA 197
|
Length = 496 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 27/171 (15%)
Query: 327 DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGL 386
G++ I PG + +VD +GRK FF + L F T G
Sbjct: 335 KTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGF 394
Query: 387 LFGARICITVTF--------TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMV------- 431
L + ++ E++PT R+T G++++ G+ G ++
Sbjct: 395 L----AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY 450
Query: 432 -----CPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSD 477
P L +F L + L + LL P ET G+ L +
Sbjct: 451 LAQHGDPTKGYPTGIWMGH--VLEIFALFMFLGILFTLLIP-ETKGKSLEE 498
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 7/181 (3%)
Query: 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346
L L+F G S LL+ L + Q+G V S G LL
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLI-------VSAFSLGYALGSLL 53
Query: 347 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAP 406
A + DR GR+ + + + L F L F + +
Sbjct: 54 AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466
E +P R +G+ S+ +G ++ PL+ L ++ ++ LL + +L
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL 173
Query: 467 P 467
Sbjct: 174 L 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 27/134 (20%), Positives = 48/134 (35%)
Query: 333 VFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI 392
+ S LA + DR GR+ + + L+ LLF L L +
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97
Query: 393 CITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILF 452
F + +P R +G+ S+ +G + PL+ L AA ++
Sbjct: 98 GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157
Query: 453 ELVILLSGISVLLF 466
++ LL+ + L
Sbjct: 158 AILALLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 346 LAAAMVDRLGRKLSM----SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVV 401
L+ A+ DR+GR+ + L+ LL L L+ G + + +
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333
Query: 402 YVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVAVALV 440
+ PE++PT VR TG +A ++ I G P +A ALV
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 334 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLF---GA 390
F+ + A PG +++A ++D++GR ++ CI L F + LL G
Sbjct: 602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGL 661
Query: 391 RICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI 450
I V+ V E+YP+ R T G +++ + ++ L+ + V AA I
Sbjct: 662 SIAAWNALDVLTV---ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG--ITKAAPI 716
Query: 451 LFELVILLSGISVLLFPFETTGRGL 475
LF L G + L +T G+ L
Sbjct: 717 LFASAALACGGLLALKLPDTRGQVL 741
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 67 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG-GPVLASWFLEFIPAPNRGF 125
R+ L + + LLSA AP++ +LL R L GL G + A+ +P RG
Sbjct: 78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGR 137
Query: 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRW------LLGLSAFPSSLLLLLYSVTPESP 179
+ + T T+ T+L + + GWR +L L A LL S S
Sbjct: 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSL 197
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 12 PCSVLLICFAMIFCDIAFDVPELSWNTTTLLNLHFSESDQSSFSFSLFG----------- 60
+LL+ A + L++ L + + ++ SLFG
Sbjct: 174 LRLLLLLALAFFLLSFGYYGL-LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 61 ---RLLLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLE 116
L R LI ++ + LL A AP+ LLL L+G GLG P L + E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 117 FIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY 172
P RG +F TF ++G L +A L++ G+ + + A + L LL
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.98 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.98 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.93 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.91 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.9 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.9 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.89 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.86 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.86 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.84 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.8 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.8 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.71 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.59 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.58 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.58 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.56 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.55 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.55 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.55 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.55 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.55 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.53 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.52 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.5 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.5 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.49 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.49 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.49 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.49 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.48 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.48 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.48 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.47 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.46 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.45 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.45 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.44 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.43 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.43 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.43 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.43 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.43 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.42 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.42 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.42 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.42 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.41 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.41 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.4 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.39 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.37 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.37 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.36 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.35 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.34 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.33 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.33 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.3 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.3 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.3 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.29 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.28 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.28 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.27 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.23 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.22 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.21 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.2 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.2 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.18 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.18 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.17 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.16 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.16 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.15 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.15 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.14 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.14 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.13 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.13 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.07 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.05 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.99 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.98 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.98 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.97 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.92 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.92 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.78 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.77 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.77 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.76 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.74 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.74 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.73 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.7 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.64 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.62 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.58 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.56 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.55 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.53 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.52 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.52 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.52 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.49 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.48 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.45 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.43 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.43 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.4 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.38 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.33 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.3 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.29 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.27 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.27 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.27 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.23 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.16 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.14 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.04 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.96 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.86 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.79 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.7 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.67 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.65 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.61 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.6 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.56 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.54 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.2 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.19 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.16 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.97 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.77 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.61 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.41 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.15 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.13 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.07 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.81 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.51 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.44 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.19 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.16 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.65 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.63 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.53 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 91.37 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.01 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 85.46 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 84.6 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 83.15 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 81.71 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 80.33 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=324.21 Aligned_cols=444 Identities=22% Similarity=0.371 Sum_probs=314.4
Q ss_pred CchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHH
Q 011365 11 SPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVT 77 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~ 77 (487)
..|.+++++.+..+.+ +++...++...+.+ .+++.+..+.++ ++..+.|.+ |+|||++++++.++.
T Consensus 164 ~~~~l~~i~~l~~~~~-g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 164 FQWALFFVLGLALMAD-GVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4566666666666665 55554444333333 245544444433 233445555 999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-----
Q 011365 78 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR----- 151 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~----- 151 (487)
+++.++++++++++.++++|++.|++.|.. +...+++.|++|+++|++.+++...++.+|.++++.++..+...
T Consensus 243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~ 322 (742)
T TIGR01299 243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSF 322 (742)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999998 88889999999999999999999999999999999887766543
Q ss_pred --------hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhh
Q 011365 152 --------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKS 223 (487)
Q Consensus 152 --------~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
.+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++.+.|........ .....+...
T Consensus 323 ~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~----~~~~~~~~~ 398 (742)
T TIGR01299 323 QMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE----KVFSVNHIK 398 (742)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh----HHHHHHHHH
Confidence 36999999998888888888889999999999999999999999988765542210000 000000000
Q ss_pred cccCCCCCCCCCcccccccchhhhhhhhcccccc-hhh-hhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhh
Q 011365 224 LLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDS-TST-LANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGL 301 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (487)
. ..+. ++.. +. +.+.....+ ... ........|.++++++++++++..+.+++.+++..+.+|++
T Consensus 399 ~-~~~~---~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl 464 (742)
T TIGR01299 399 T-IHQE---DELI----EI------ESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464 (742)
T ss_pred H-hhhh---hhhh----cc------cccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0000 00 000000000 000 00111123446788999999999999999999999999999
Q ss_pred hhhhhhhhccccc--------------------------------------------------------cccccccC---
Q 011365 302 VLLTTELNNGQNK--------------------------------------------------------CVSNELQS--- 322 (487)
Q Consensus 302 ~~~~~~~~~~~~~--------------------------------------------------------~~~~~~~~--- 322 (487)
..|.|.+.++.+. |..+....
T Consensus 465 ~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (742)
T TIGR01299 465 SVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNT 544 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccch
Confidence 9999987533100 00000000
Q ss_pred -------------------------------------Ccc-----c----cccchhhhhhhhcchhHHHHHHHHHhhhhh
Q 011365 323 -------------------------------------GKS-----R----DINYGDVFITSFAEFPGLLLAAAMVDRLGR 356 (487)
Q Consensus 323 -------------------------------------~~~-----~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 356 (487)
+-+ . ........+..++.+++.++.++++||+||
T Consensus 545 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GR 624 (742)
T TIGR01299 545 FFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGR 624 (742)
T ss_pred hhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000 0 001334556678889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 357 KLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 357 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
|+++.++.++.+++.+++.+..+....+++.++.+++.++.++...++++|.+|++.|++++|+.+...++|.+++|+++
T Consensus 625 r~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 625 LRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777666555555566777777788889999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 437 VALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
|.+.+. +...++++++++.++++++.+++ ||++++.+
T Consensus 705 g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l 741 (742)
T TIGR01299 705 GSFVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL 741 (742)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence 988875 34566777777766666655544 88877643
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=264.55 Aligned_cols=379 Identities=42% Similarity=0.702 Sum_probs=316.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 142 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~ 142 (487)
++|||+...+..+...+...+.+.++|+..+.+.|.+.|+|.|..|...++-.|..|..+|...+-.. ..+.+|.++..
T Consensus 139 ~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea 217 (528)
T KOG0253|consen 139 TIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEA 217 (528)
T ss_pred hhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999888777 99999999999
Q ss_pred HHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhh
Q 011365 143 GIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNK 222 (487)
Q Consensus 143 ~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.+......++|||+.....+.+..+.....+++||+|++...+++++++.+.++++++.|+.+.|..+......++.++.
T Consensus 218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 99999999999999999999888888888999999999999999999999999999999998887765533222221111
Q ss_pred hcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhh
Q 011365 223 SLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV 302 (487)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
.. +.++ .+....+. ...+..+++.++.++..++.+..+|.+.+.||+..
T Consensus 298 ~~--------------------~~~~--------~~~~a~ke---~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~V 346 (528)
T KOG0253|consen 298 ES--------------------DLDD--------SKSSAAKE---VRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSV 346 (528)
T ss_pred hh--------------------chhh--------hhhccccc---cccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 00 0000 00000111 11167788999999999999999999999999999
Q ss_pred hhhhhhhcccccc------ccccccC----CccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011365 303 LLTTELNNGQNKC------VSNELQS----GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 372 (487)
Q Consensus 303 ~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 372 (487)
.....+.+....| .+.+.+. ..+....+.-..+..+...+|.++.++++||+|||+.+..++++++++.+
T Consensus 347 Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflf 426 (528)
T KOG0253|consen 347 LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLF 426 (528)
T ss_pred HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8887777655422 2222222 33444456777788899999999999999999999999999999999999
Q ss_pred hHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHH
Q 011365 373 PLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILF 452 (487)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 452 (487)
++....+.....++.+...++..+.+.+.+.+..|.+|+..|+++.|..+.+.++|+++.|++. +......+.+..++
T Consensus 427 ll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy 504 (528)
T KOG0253|consen 427 LLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVY 504 (528)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHH
Confidence 8888777777777888888899999999999999999999999999999999999999999998 44445567788899
Q ss_pred HHHHHHHHHheeeccccCCCCCC
Q 011365 453 ELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+++++++++...+++-|+|+|.+
T Consensus 505 ~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 505 GALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999998864
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=296.51 Aligned_cols=408 Identities=22% Similarity=0.291 Sum_probs=272.5
Q ss_pred chHHHHHHHHHHHhcccccccccCccccchhc------ccccccchhh----------hHHHHHHHH--HhhhhHHHHHH
Q 011365 12 PCSVLLICFAMIFCDIAFDVPELSWNTTTLLN------LHFSESDQSS----------FSFSLFGRL--LLSFRKGFLIT 73 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~ 73 (487)
.+.++.++....+.| |++...++...+.+.. ...+..+.++ ++..+.|.+ |+|||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 14 HFRAIVIAGVGFFTD-SYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 445555666666666 6666555543333321 1111122222 223344555 99999999999
Q ss_pred HHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHH
Q 011365 74 AIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 146 (487)
Q Consensus 74 ~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~ 146 (487)
.++.+++.++++++++ ++.++++|+++|++.|.. +....++.|++|+++|++++++.+....+|.++++.++.
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776 789999999999999998 888899999999999999999999999999999998877
Q ss_pred Hhhc-----------------------hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChH-HHHHHHHHHHhHh
Q 011365 147 LVMP-----------------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTA-EARHVLEKIAKIN 202 (487)
Q Consensus 147 ~l~~-----------------------~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~-~~~~~~~~~~~~~ 202 (487)
.+.. .++||..|.+.++++++.++..+++||+|+|+..+++.+ ++.+.+++..+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~ 252 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK 252 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence 6532 247999999999988888888889999999998877764 3555444433211
Q ss_pred CCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh----
Q 011365 203 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP---- 278 (487)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 278 (487)
..+ +.++. . +.+++ ++. ...++++++++
T Consensus 253 ~~~-------------------------~~~~~----~----~~~~~------------~~~---~~~~~~~l~~~~~~~ 284 (502)
T TIGR00887 253 IEA-------------------------EPDEV----E----KASTA------------VEV---PKASWSDFFTHFFKW 284 (502)
T ss_pred ccc-------------------------Ccccc----c----chhcc------------ccc---hhhhHHHHHHHHhhh
Confidence 000 00000 0 00000 000 00145555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCcccccc------------chhhhhhhhcchhHHHH
Q 011365 279 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN------------YGDVFITSFAEFPGLLL 346 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 346 (487)
+..+..+.....++...+.+|+...+.|.+.++.| .+.... .....+..++.+++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 354 (502)
T TIGR00887 285 RHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG----------YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV 354 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc----------CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444445555666777888888888876555 322211 11233445566778899
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC---CcchHHHHHHH-HHHHHHhhhHHHhhhcccccCCcchhHHHHHHH
Q 011365 347 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFG-ARICITVTFTVVYVYAPEIYPTSVRTTGVGVAS 422 (487)
Q Consensus 347 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (487)
.++++||+|||+.++.+..+++++.+++.... +.........+ ..++..+..+..+.+..|.+|++.|+++.|+.+
T Consensus 355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~ 434 (502)
T TIGR00887 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISA 434 (502)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHH
Confidence 99999999999998888777766655444321 11111111112 122223345677888899999999999999999
Q ss_pred HHHhHhHhHHHHHHHHHHhhc----------cchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCC
Q 011365 423 SIGRIGGMVCPLVAVALVHGC----------HQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 479 (487)
Q Consensus 423 ~~~~~g~~~~~~i~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
.+++++++++|.+.+.+.+.. +....+++++++.+++.+.. ++.||+++++++|..
T Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 435 ASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence 999999999999999998843 33456777777777665554 556899998876543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=281.87 Aligned_cols=383 Identities=17% Similarity=0.191 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHHhcccccccccCccccchh-cccccccc----h------------hhhHHHHHHHH--HhhhhHHHHHH
Q 011365 13 CSVLLICFAMIFCDIAFDVPELSWNTTTLL-NLHFSESD----Q------------SSFSFSLFGRL--LLSFRKGFLIT 73 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~------------~~~~~~~~G~~--r~Grr~~l~~~ 73 (487)
+.++..+.+..++| ++|...++...+.+. +++.+... . ..+++.++|.+ |+|||+++.++
T Consensus 15 ~~~~~~~~~g~~~~-~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 93 (490)
T PRK10642 15 RKAITAASLGNAME-WFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44566666677777 666666655555443 23211111 1 11334455666 99999999999
Q ss_pred HHHHHHHHHHHhhchhHHH--------HHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHH
Q 011365 74 AIVTSAAGLLSAFAPNYYL--------LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI 144 (487)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~ 144 (487)
.++++++.+++++++|++. ++++|+++|++.|.. +...+++.|++|+++||++.++...+..+|.++++.+
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~ 173 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV 173 (490)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 889999999999998 8888999999999999999999999998998888876
Q ss_pred HHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchh
Q 011365 145 AWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 216 (487)
Q Consensus 145 ~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
...+. ..+|||+.|++.+++.++.++....+||+|++...+++.++..+ +..
T Consensus 174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------~~~------------ 233 (490)
T PRK10642 174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------EGL------------ 233 (490)
T ss_pred HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------ccc------------
Confidence 65442 25799999999887777666667778999876422111100000 000
Q ss_pred hhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHH
Q 011365 217 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF 296 (487)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (487)
.+.+ ..++++++++ +++.........+....
T Consensus 234 ---------------------------------------------~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 264 (490)
T PRK10642 234 ---------------------------------------------QDGP---KVSFKEIATK-HWRSLLTCIGLVIATNV 264 (490)
T ss_pred ---------------------------------------------cccc---cCCHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 0000 0034455543 23333333344455566
Q ss_pred HHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-H
Q 011365 297 SYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP-L 374 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~ 374 (487)
.+|....|.|.+.++ .+ .+............++..++.++.|+++||+|||+.+..+.++..+..+. +
T Consensus 265 ~~~~~~~~~p~~l~~~~g----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 334 (490)
T PRK10642 265 TYYMLLTYMPSYLSHNLH----------YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF 334 (490)
T ss_pred HHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 777888888888743 22 44444455566667788889999999999999999887776543332221 2
Q ss_pred h--ccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHH
Q 011365 375 L--FQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALIL 451 (487)
Q Consensus 375 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~ 451 (487)
. ...+........++.+++.+........+..|.+|++.|+++.|+.+....+++.++|.+.|++.+..+ ++.++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~ 414 (490)
T PRK10642 335 ILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY 414 (490)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 2 222333334444555665566666677788899999999999998777778888899999999988665 4545555
Q ss_pred HHHHHHHHHHheeeccccCCCCCCC
Q 011365 452 FELVILLSGISVLLFPFETTGRGLS 476 (487)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
..+..+++.+..+ +.||++++..+
T Consensus 415 ~~~~~~i~~~~~~-~~pes~~~~~~ 438 (490)
T PRK10642 415 LMVVAVIGLITGV-TMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHH-HhccccCCCCC
Confidence 5555554444433 44777665443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=271.60 Aligned_cols=364 Identities=20% Similarity=0.281 Sum_probs=280.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT 138 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 138 (487)
|+|||..+.++.++..++.+++.+ .+++++++++|++.|+..|.. .....++.|..|++.||....+.+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 999999999999988888877665 478999999999999999999 7778999999999999999999999999999
Q ss_pred HHHHHHHHH--hhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhh-cCChHHHHHHHHHHHhHhCCCCCCCCCCcch
Q 011365 139 ILEAGIAWL--VMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCL-KGRTAEARHVLEKIAKINGTKLPSGNLVSDW 215 (487)
Q Consensus 139 ~i~~~~~~~--l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+++..++.. +.+...|++.+.+..+++++.++...++||||+|+.. +++.++|++.++.++..++++. +.
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~-------~~ 238 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA-------EI 238 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh-------HH
Confidence 999776643 3455679999999999999999999999999999987 7899999999999876443210 00
Q ss_pred hhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHH-HHHHHHHHHHHH-
Q 011365 216 EHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELI-KSTLLLWLVFFG- 293 (487)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~- 293 (487)
+.+.++.+ + ++..+.+..+++++++++.. +...+.+...+.
T Consensus 239 e~~~~e~~------------------------~-------------~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~q 281 (485)
T KOG0569|consen 239 EEMLREIE------------------------E-------------EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQ 281 (485)
T ss_pred HHHHHHHH------------------------H-------------hccccccCCcHHHHhcCcchhHHHHHHHHHHHHH
Confidence 00000000 0 00000111278888876544 444444444443
Q ss_pred HHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 011365 294 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 373 (487)
.....+....|...++++.| .+.+.+.......++...+.++++.+++||+|||++++.+..++.+..++
T Consensus 282 q~sGi~ai~~Yst~i~~~aG----------~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~ 351 (485)
T KOG0569|consen 282 QFSGINAIFFYSTSIFKTAG----------FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL 351 (485)
T ss_pred HhcCcceeHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 33444556667777776666 78888888888999999999999999999999999999999988887776
Q ss_pred Hhcc----CC--cchH---HHHHHHHHHH-HHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 374 LLFQ----QP--KGLT---TGLLFGARIC-ITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 374 ~~~~----~~--~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
+... .. .|.. +.+.++..++ ..+..|+.+-+.+|++|++.|+.++++...++++.+++....+..+.+..
T Consensus 352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~ 431 (485)
T KOG0569|consen 352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI 431 (485)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6521 11 1221 2233333333 33457999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCCcc
Q 011365 444 HQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPS 481 (487)
Q Consensus 444 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
|. ..++++.+.+++..+..++..||||+|+..|..++
T Consensus 432 g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 432 GP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 87 67888888889999999999999999987665443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=278.01 Aligned_cols=355 Identities=37% Similarity=0.623 Sum_probs=268.3
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||++++++.++.+++.++.++++|++.+++.|++.|++.+.. +....++.|++|+++|+++.++...
T Consensus 144 ~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~ 223 (505)
T TIGR00898 144 SFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV 223 (505)
T ss_pred HHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHH
Confidence 4455666 999999999999999999999999999999999999999999998 8888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (487)
+..+|.++++.+++.+. +||+.|++.+++.++..+..+++||+|+|+..+++.+++.+.+++..+.++...+++.
T Consensus 224 ~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-- 298 (505)
T TIGR00898 224 FFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV-- 298 (505)
T ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHH--
Confidence 99999999999887764 4999999999988888777788999999999999998888888877665543211000
Q ss_pred cchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHH-HHHHHHHH
Q 011365 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKS-TLLLWLVF 291 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 291 (487)
.+.+. +++ . ..+. +..+++++++++..+. .+.....+
T Consensus 299 ----~~~~~-------------------------~~~---~-------~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 299 ----LSLSL-------------------------EKD---L-------SSSK---KQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred ----Hhhhh-------------------------hhh---h-------hhcc---CCCcHHHHhCChHHHHHHHHHHHHH
Confidence 00000 000 0 0000 0115677776554443 44444555
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
+.....+++...+.+.+. .+ ......+.++..+++.++.+++.||+|||+.+.++.++.+++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 399 (505)
T TIGR00898 337 FTTAFSYYGLVLDLGNLG--------------GN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVAL 399 (505)
T ss_pred HHHHHHHHHHhccccccC--------------CC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 666666666655554432 11 2344556677888899999999999999999999888888877
Q ss_pred HhHhccCCc--chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHH
Q 011365 372 VPLLFQQPK--GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAAL 449 (487)
Q Consensus 372 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~ 449 (487)
+++.+.++. +......++.+++.+..++..+.+..|.+|++.|++++|+.+....+|++++|.+.+ + +..+...++
T Consensus 400 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~ 477 (505)
T TIGR00898 400 LLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPL 477 (505)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHH
Confidence 766655443 334445556666777778889999999999999999999999999999999999998 4 445566777
Q ss_pred HHHHHHHHHHHHheeeccccCCCCCCCC
Q 011365 450 ILFELVILLSGISVLLFPFETTGRGLSD 477 (487)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
++++++.++++++.+ +.||+++++++|
T Consensus 478 ~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 478 VLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 777777777766654 447888877654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=270.26 Aligned_cols=369 Identities=25% Similarity=0.301 Sum_probs=268.4
Q ss_pred cccCchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHH
Q 011365 8 DTVSPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITA 74 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~ 74 (487)
+.+++|.++.+++...+++ +++....+...+.+ ++++.+..+.+.+ +..+.|.+ |+|||+++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLE-GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3446788888888888877 66666666544433 4666666655442 23444555 999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhh
Q 011365 75 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 153 (487)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 153 (487)
++.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.++..+.+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 999999999999999999999999999999988 7888999999999999999999999999999999999988888889
Q ss_pred hHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCC
Q 011365 154 WRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 232 (487)
Q Consensus 154 w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (487)
||..|++.+++.++. .+...++||+|++...+++.++.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 208 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP--------------------------------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---------------------------------------
Confidence 999999887766655 3445667887653211110000000
Q ss_pred CCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 011365 233 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ 312 (487)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (487)
..+..++++..+.........+......+....+.|.+.++.
T Consensus 209 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (406)
T PRK11551 209 --------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ 250 (406)
T ss_pred --------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111111111112222233333444445556666778877654
Q ss_pred cccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHH
Q 011365 313 NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (487)
+ .+....+.......++.++++++.|++.||+|+|+.+..+.+...++.+.+...++.+...+..++.++
T Consensus 251 g----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 251 G----------LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred C----------CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4 666667778888889999999999999999999998887766666666655555555555555666777
Q ss_pred HHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHhee
Q 011365 393 CITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI-LFELVILLSGISVL 464 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~-~~~~~~~~~~~~~~ 464 (487)
+..+..+...++..|.+|+++|+++.|+.+...++|..++|.+.|.+.++.+.+...+ ....+.+++.+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999999999999999998766554433 33333333333333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=272.70 Aligned_cols=364 Identities=21% Similarity=0.241 Sum_probs=245.8
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc------------hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCC
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA------------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA 120 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~ 120 (487)
+++.|.+ |+|||++++++.++.+++.++++++ ++++.++++|+++|++.|.. +...+++.|++|+
T Consensus 72 ~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 72 GALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 4455665 9999999999999999998877763 23567889999999999998 8888999999999
Q ss_pred CCchhHHHHHHHHHHHhHHHHHHHHHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHH
Q 011365 121 PNRGFWMVIFQTFWTVGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEAR 192 (487)
Q Consensus 121 ~~r~~~~~~~~~~~~lG~~i~~~~~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~ 192 (487)
++|++++++.+.+..+|.++++.+++.+. +.++||+.|++.+++.++..+..+++||+|+++..+++.++++
T Consensus 152 ~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 231 (479)
T PRK10077 152 HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAE 231 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHH
Confidence 99999999999999999999988776553 3569999999988888777767788999999877777766665
Q ss_pred HHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHH
Q 011365 193 HVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (487)
+..++..+.+. ...+.++.. ...+ ++.. ..
T Consensus 232 ~~~~~~~~~~~-----------~~~~~~~~~--------------------~~~~--------------~~~~-----~~ 261 (479)
T PRK10077 232 GILRKIMGNTL-----------ATQALQEIK--------------------HSLD--------------HGRK-----TG 261 (479)
T ss_pred HHHHHHcCChh-----------HHHHHHHHH--------------------HHHH--------------Hhhh-----hh
Confidence 54443321000 000000000 0000 0000 00
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHh
Q 011365 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD 352 (487)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 352 (487)
+..+...............+.....++...++.|.+.++.+ .+...........++..+++.++.+++.|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g----------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 331 (479)
T PRK10077 262 GKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG----------ASTDIALLQTIIVGVINLTFTVLAIMTVD 331 (479)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcC----------CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111000000000111112222223344556677665443 44444455666677888899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhcc--CCc-c-hHHHHHHHHHHHHHh-hhHHHhhhcccccCCcchhHHHHHHHHHHhH
Q 011365 353 RLGRKLSMSSMFFCCCIFLVPLLFQ--QPK-G-LTTGLLFGARICITV-TFTVVYVYAPEIYPTSVRTTGVGVASSIGRI 427 (487)
Q Consensus 353 r~g~r~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 427 (487)
|+|||+.+..+.++++++.+.+... .+. . ......++.+++.+. ..+..+.++.|.+|+++|+++.|+.+...++
T Consensus 332 r~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 411 (479)
T PRK10077 332 KFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411 (479)
T ss_pred HhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH
Confidence 9999999998888888776665422 121 1 122223333333332 3467889999999999999999999999999
Q ss_pred hHhHHHHHHHHHH------hhccchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCC
Q 011365 428 GGMVCPLVAVALV------HGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 479 (487)
Q Consensus 428 g~~~~~~i~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
+.++++.+.+.+. +..++...+++++++.+++.++.+++.||+|+++.+|.+
T Consensus 412 g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 469 (479)
T PRK10077 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469 (479)
T ss_pred HHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 9999977776544 566777778888877777777777777888887766543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=246.67 Aligned_cols=341 Identities=21% Similarity=0.217 Sum_probs=254.7
Q ss_pred ccCccccchhcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 011365 33 ELSWNTTTLLNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV 100 (487)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 100 (487)
..+...+...|++.+..+.+... +++...+ |+.||++++....++.++.+++++++||+.++++|++.
T Consensus 32 ~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~ 111 (394)
T COG2814 32 PVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111 (394)
T ss_pred HHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444455568888877765532 3444444 99999999999999999999999999999999999999
Q ss_pred hhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCC
Q 011365 101 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPES 178 (487)
Q Consensus 101 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~ 178 (487)
|+..|.+ +...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||..|+..++++++. +..+..+|
T Consensus 112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-- 189 (394)
T COG2814 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-- 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 9999999 8888999999999999999999999999999999999999999999999999999999888 55567777
Q ss_pred chhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccch
Q 011365 179 PRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDST 258 (487)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (487)
|+....+ ++.+
T Consensus 190 ~~~~~~~-~~~~-------------------------------------------------------------------- 200 (394)
T COG2814 190 PSEISGS-LPGP-------------------------------------------------------------------- 200 (394)
T ss_pred CccCCCC-CCcc--------------------------------------------------------------------
Confidence 2200000 0000
Q ss_pred hhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhh
Q 011365 259 STLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF 338 (487)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (487)
.++..++++++..+..+....+.+...+. .+.+..|.+.+..+ ++.+...+....+++
T Consensus 201 ----------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~--~ftYi~P~L~~v~g----------~s~~~vs~~Ll~~Gv 258 (394)
T COG2814 201 ----------LRTLLRLLRRPGVLLGLLATFLFMTGHFA--LYTYIRPFLESVAG----------FSVSAVSLVLLAFGI 258 (394)
T ss_pred ----------hhHHHHHhcCchHHHHHHHHHHHHcchhh--hHHhHHHHHHHccC----------CCHhHHHHHHHHHHH
Confidence 00223344443333333333332222222 22333455444333 677777889999999
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc-CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHH
Q 011365 339 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTG 417 (487)
Q Consensus 339 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (487)
+.++|+.++|++.|| +.|+.+.....+.++.++.+.+. .+.+......++.++..............+.. ++.+..+
T Consensus 259 ~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a 336 (394)
T COG2814 259 AGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLA 336 (394)
T ss_pred HHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHH
Confidence 999999999999999 88888888777777776666654 44445555556666666666666666777744 4669999
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 418 VGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 418 ~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
.+++....++|..+|..++|.+.|+.|+....+..+.+.+++..+.....+
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888888877777777766655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=266.27 Aligned_cols=371 Identities=24% Similarity=0.310 Sum_probs=254.3
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
.++.|.+ |+|||++++++.++.+++.+++.++ .+++.+++.|+++|++.+.. +...+++.|++|+++|++++++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL 167 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence 4455665 9999999999999999999888554 44668999999999999998 7778999999999999999999
Q ss_pred HHHHHHHhHHHHHHHH---HHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCC
Q 011365 130 FQTFWTVGTILEAGIA---WLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKL 206 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~---~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (487)
.+.+..+|.++++.++ ....+..+||+.|++.++..++.++..+++||+|++...+++.+++++..++..+.+..
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE-- 245 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCC--
Confidence 9999999999999998 66667789999999977777777777788899998766555555444333322111000
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHH
Q 011365 207 PSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
+ .+..++.+. . +..+ +...+..+..+..+...+++...+.++.
T Consensus 246 -~----~~~~~~~~~------------------------~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (481)
T TIGR00879 246 -D----KELLDELEL------------------------I-DIKR-------SIEKRSVQPSWGSLFSSTRRIRRRLFLG 288 (481)
T ss_pred -c----HHHHHHHHH------------------------H-HHHH-------HHHHhhccccHHHHHhcCchhHHHHHHH
Confidence 0 000000000 0 0000 0000000111223333333322233333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
..+..+...........+.|.+.++.+ .+....+.......++.+++.++.+++.||++||+.+..+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 358 (481)
T TIGR00879 289 VVLQWFQQFTGINAIMYYSPTIFENAG----------VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAG 358 (481)
T ss_pred HHHHHHHHHhCCeehHHHHHHHHHHcC----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344444444444455666777765444 5555557777788888999999999999999999998888777
Q ss_pred HHHHHHhHh---cc-CC------cchHHHHHHHHHHHH-HhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 367 CCIFLVPLL---FQ-QP------KGLTTGLLFGARICI-TVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 367 ~~~~~~~~~---~~-~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
.+++.+.+. .. .+ .........+...+. .+..+....+..|.+|++.|++++|+.+...++|++++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~ 438 (481)
T TIGR00879 359 MAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438 (481)
T ss_pred HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666554 11 11 122222222222222 23346667788999999999999999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 436 AVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 436 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
.+.+.+..++...+++.++++++++++.+++.||+++++.
T Consensus 439 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 9999999888888888888888877777777777776544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=260.45 Aligned_cols=358 Identities=18% Similarity=0.208 Sum_probs=243.1
Q ss_pred CchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHH
Q 011365 11 SPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVT 77 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~ 77 (487)
.++..++.+++.+..+ +++.....+..+.+ ++++.+..+.+. ++.++.|.+ |+|||+++.++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 15 PQKNALFSAWLGYVFD-GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4455566666666665 45444444333333 355655554433 334455665 999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHH
Q 011365 78 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 156 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~ 156 (487)
+++.++++++++++.++++|++.|++.+.. +....++.|++|+++|++++++...+.++|.++++.+.+.+.+..+||+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 999999999999999999999999999988 7888999999999999999999999999999999999999888899999
Q ss_pred HHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCc
Q 011365 157 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 236 (487)
Q Consensus 157 ~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (487)
.|++..+..++.+......||++++...+ ..+ +.++ . +
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~-~~~~--~----------------------~----- 211 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPESKEWEEAK------------LSG-KGKH--S----------------------Q----- 211 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHHhh------------hhc-cccc--c----------------------c-----
Confidence 99886554444333333344443211000 000 0000 0 0
Q ss_pred ccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 011365 237 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (487)
. .......+++++++++..+.........+......+....+.|.+.++.+
T Consensus 212 -------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 262 (426)
T PRK12307 212 -------S-------------------AWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG--- 262 (426)
T ss_pred -------c-------------------chhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 0 00000114566666655554444333333333344445566777765443
Q ss_pred cccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHH--HH
Q 011365 317 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI--CI 394 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 394 (487)
.+....+.......++.++++++.+++.||++||+.+..+.++.++..+.+..............+.+. ..
T Consensus 263 -------~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (426)
T PRK12307 263 -------FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATN 335 (426)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhc
Confidence 555555667778888899999999999999999999888877766655544432222222222222222 22
Q ss_pred HhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchh
Q 011365 395 TVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTA 447 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~ 447 (487)
.+..+....++.|.+|++.|++++|+.+...++++.++|.+.|++.+..|...
T Consensus 336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 336 VGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred ccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 23345666788999999999999999999999999999999999999887554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=257.46 Aligned_cols=381 Identities=17% Similarity=0.199 Sum_probs=249.9
Q ss_pred CchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHH
Q 011365 11 SPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVT 77 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~ 77 (487)
.+|.++...++.+.++ ..|...++...+.+ ++++.+..+.+++. ..+.|.+ |+|||+++..+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 5 LFRRLIIFLFILFIFS-FLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred ehhHHHHHHHHHHHHH-HhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 3455666666666665 55555555444443 47777777765533 2334555 999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc------
Q 011365 78 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------ 150 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~------ 150 (487)
+++.+++++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++.+.+.++|.++++.+++++.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999998 7777899999999999999999999999999999999988763
Q ss_pred hhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCC
Q 011365 151 RLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 229 (487)
Q Consensus 151 ~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (487)
..|||+.|++.+++.++. .+.++++||+|+.. +.-.++.++..++..+.+....++ +
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~--~------------------ 221 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQ--P------------------ 221 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccc--c------------------
Confidence 369999999988887766 45566778988521 000011111111100000000000 0
Q ss_pred CCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011365 230 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 309 (487)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (487)
..+ .++.+......+++++++ .++.....+++....++.+..|.|.++
T Consensus 222 ------~~~----------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l 269 (412)
T TIGR02332 222 ------EGA----------------------FAHAAMPQRSMLREIFTP----AIMLYTLAYFCLTNTLSAINIWTPQIL 269 (412)
T ss_pred ------ccc----------------------cccccccHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000001134444432 234445555666667778888999988
Q ss_pred ccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHhHhccCCcchHHHHHH
Q 011365 310 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS-MSSMFFCCCIFLVPLLFQQPKGLTTGLLF 388 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (487)
++.+ .+.+....+.......++..++.++.|+++||+++|+. ......+..+..++.....+.........
T Consensus 270 ~~~~--------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (412)
T TIGR02332 270 QSFN--------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGII 341 (412)
T ss_pred HhcC--------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5431 11444555777788889999999999999999997764 33333344433332222222222222222
Q ss_pred HHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHH
Q 011365 389 GARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFEL 454 (487)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~ 454 (487)
+.+++.....+..+....|.+|++.|++++|+.+...++|++++|.+.|.+.|..| +...+.+.++
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 342 MASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 22223323334455666788999999999999999999999999999999999886 4444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=251.81 Aligned_cols=330 Identities=16% Similarity=0.085 Sum_probs=239.8
Q ss_pred hhcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-
Q 011365 41 LLNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG- 107 (487)
Q Consensus 41 ~~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~- 107 (487)
.++++.+..+.+++. ..+.|.+ |+|||+++..+.++.+++.+++.+++|++.+++.|+++|++.+..
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 356677666655432 3344555 999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcC
Q 011365 108 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKG 186 (487)
Q Consensus 108 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~ 186 (487)
+...+++.|++|+++|++++++...+.++|.+++|++++.+.+..|||+.|++.++++++..+ ....+||.|+.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----- 190 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----- 190 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----
Confidence 778899999999999999999999999999999999999999889999999999888777643 34445654320
Q ss_pred ChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhcccc
Q 011365 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNM 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (487)
++++
T Consensus 191 ~~~~---------------------------------------------------------------------------- 194 (390)
T PRK03545 191 HSGS---------------------------------------------------------------------------- 194 (390)
T ss_pred Ccch----------------------------------------------------------------------------
Confidence 0000
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHH
Q 011365 267 GGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346 (487)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (487)
.++.+++++++..+.... ..+......+....+.+.+.++. .+.+....+.......++.++++++
T Consensus 195 --~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~---------~g~s~~~~~~~~~~~~~~~~~g~~~ 260 (390)
T PRK03545 195 --LKSLPLLFRRPALVSLYL---LTVVVVTAHFTAYSYIEPFVQQV---------AGLSENFATLLLLLFGGAGIIGSVL 260 (390)
T ss_pred --HHHHHHHHhCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh---------cCCCccHHHHHHHHHHHHHHHHHHH
Confidence 003334444443332222 22222222333333444444321 1256666677778888899999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH-hHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHH
Q 011365 347 AAAMVDRLGRKLSMSSMFFCCCIFLV-PLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425 (487)
Q Consensus 347 ~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 425 (487)
.+++.||+++|..... ..+..+... .....++.+......++.|++.....+.....+.+..| +.|++++|+.+...
T Consensus 261 ~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 338 (390)
T PRK03545 261 FSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIF 338 (390)
T ss_pred HHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 9999999998865443 333333333 33344444555566667777776666777778888776 57899999999999
Q ss_pred hHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeecc
Q 011365 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 426 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
++|..+||.+.|.+.|..|+...++..+.+.+++.++.....
T Consensus 339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998888888877777776665554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=247.03 Aligned_cols=316 Identities=14% Similarity=0.059 Sum_probs=221.8
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
.++....|.+ |+|||+++..+......+.+....++|++.+++.|+++|++.+........+.|++|+++|++++++.
T Consensus 40 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~ 119 (368)
T TIGR00903 40 LALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLL 119 (368)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3445556766 99999887766555555544334447999999999999999986666666679999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
..+..+|.+++++++.++.+.+|||..|++.++++++. ++.++++||+|++..+ +.+ .++
T Consensus 120 ~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~--~~~-~~~---------------- 180 (368)
T TIGR00903 120 SFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAE--GFG-FKD---------------- 180 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--Ccc-hHH----------------
Confidence 99999999999999999999999999999988877766 5566778988763110 000 000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
...++++++++ +.++....
T Consensus 181 ----------------------------------------------------------~~~~~~~ll~~---~~~~~~~~ 199 (368)
T TIGR00903 181 ----------------------------------------------------------AVKEFGALAGR---KDLWIIGA 199 (368)
T ss_pred ----------------------------------------------------------HHHHHHHHHcC---hhHHHHHH
Confidence 00145667766 33455666
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh---HHHH-HHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK---LSMS-SMFF 365 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~~~~-~~~~ 365 (487)
..++....++++..|.|.++++.+ .+.. .+....+..+ .+.+..+++.||..|| +... ....
T Consensus 200 ~~~~~~~~~~~~~~wlp~~L~~~g----------~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 200 ILGFGVALFDNLAIWLEAALRPAG----------LEDI-AGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAAL 265 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------CChH-HHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHH
Confidence 677777888888899999996543 4332 3333334333 3444457788877543 3322 2333
Q ss_pred HHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 366 CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
+.++....+....+.........+.+++.....+..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.. +.
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~ 343 (368)
T TIGR00903 266 LIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SA 343 (368)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CH
Confidence 3444444444444444444455556666667777888999999999999999999999999999999999988774 55
Q ss_pred hhHHHHHHHHHHHHHHhee
Q 011365 446 TAALILFELVILLSGISVL 464 (487)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~ 464 (487)
...+.++++..+++.+...
T Consensus 344 ~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 344 EAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=243.23 Aligned_cols=386 Identities=19% Similarity=0.189 Sum_probs=286.5
Q ss_pred chHHHHHHHHHHHhcccccccccCccccch-hcccccccchhhhHHH----------HHHHH--HhhhhHHHHHHHHHHH
Q 011365 12 PCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSFSFS----------LFGRL--LLSFRKGFLITAIVTS 78 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~G~~--r~Grr~~l~~~~~~~~ 78 (487)
++.++...++.+..- -+.....+...+.+ ++..++..+.+.+++. +.|.+ |.+.|+.+.+++++.+
T Consensus 27 r~qif~~~fiGYa~f-Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAF-YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 444555444444443 33444444444443 3444666666655433 33544 9999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHH--HHhhchhhhH
Q 011365 79 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA--WLVMPRLGWR 155 (487)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~--~~l~~~~~w~ 155 (487)
+..++++++++.+.+.+..++.|..+|.. |++...++.|+++++||+..++.+.+.++|..+.|++. +++..+++||
T Consensus 106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~ 185 (448)
T COG2271 106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR 185 (448)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999 8888888999
Q ss_pred HHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCC
Q 011365 156 WLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT 234 (487)
Q Consensus 156 ~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (487)
..|++.++++++. ++.++.++|+|+..-.. +.++-++...+.++ + ++|.+
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~~~d~~e~~~--------------------~-------~~~~~- 236 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEYRGDPLEIYE--------------------E-------EKENE- 236 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHhhcCchhhhh--------------------h-------hccCC-
Confidence 9999999988877 66677788888632111 11111100000000 0 00000
Q ss_pred CcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 011365 235 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK 314 (487)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (487)
.......-.+.++++ +..+.+.+..+.....-|++..|.|.|+.+..
T Consensus 237 -----------------------------~ls~~~i~~~YVL~N---k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k- 283 (448)
T COG2271 237 -----------------------------GLTAWQIFVKYVLKN---KLIWLLALANVFVYVVRYGINDWGPLYLSEVK- 283 (448)
T ss_pred -----------------------------CccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-
Confidence 000000134455566 45556677777777888999999999987643
Q ss_pred cccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh--hhhHHHH-HHHHHHHHHHHhHhccCCc--chHHHHHHH
Q 011365 315 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS-SMFFCCCIFLVPLLFQQPK--GLTTGLLFG 389 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 389 (487)
+++...+....+.+-.++++|++++|+++||+ |||.... ++.+...++++.+...++. ++..++++.
T Consensus 284 --------~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~ 355 (448)
T COG2271 284 --------GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFI 355 (448)
T ss_pred --------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 47888888999999999999999999999996 5665544 4444555555555555444 667777888
Q ss_pred HHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhH-hHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 390 ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
.|+...+..-+.-....|..|.+..|++.|+...++++ |...+....|++.|.+||...|.++.+.++++.++.....+
T Consensus 356 iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 356 IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88888888878888999999999999999999999998 89999999999999999999998888888777766655543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=251.42 Aligned_cols=318 Identities=21% Similarity=0.304 Sum_probs=212.5
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCch
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRG 124 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~ 124 (487)
+.+.|.+ |+|||+++.++.++++++++++++++++. .+++.|+++|++.|.. +...+++.|++|+++|+
T Consensus 80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 159 (432)
T PRK10406 80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG 159 (432)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc
Confidence 4455665 99999999999999999999999998874 5889999999999998 88889999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHH
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLE 196 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~ 196 (487)
++.++...+...|.++++.+...+. +.+|||.+|++.+++.++.+.....+||+|++.. ++
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~~--- 228 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------RA--- 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------hh---
Confidence 9999999888888888887655543 2579999999988888777666666777654210 00
Q ss_pred HHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhh
Q 011365 197 KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILL 276 (487)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (487)
. +. ..++++++
T Consensus 229 -~---~~-----------------------------------------------------------------~~~~~~l~ 239 (432)
T PRK10406 229 -L---KE-----------------------------------------------------------------AGSLKGLW 239 (432)
T ss_pred -h---cc-----------------------------------------------------------------cccHHHHH
Confidence 0 00 00345555
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhh
Q 011365 277 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR 356 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 356 (487)
+++.. ........+.....+|....|.|.+..+. .+.+..+.+....+..+...++..+.|+++||++|
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~~l~~~---------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr 308 (432)
T PRK10406 240 RNRRA--FIMVLGFTAAGSLCFYTFTTYMQKYLVNT---------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR 308 (432)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 54322 22222223334556777778888877432 12444444556666666777888899999999999
Q ss_pred hHHHHHHHHHHHHHHHhHh--c--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhH-hHhH
Q 011365 357 KLSMSSMFFCCCIFLVPLL--F--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMV 431 (487)
Q Consensus 357 r~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~ 431 (487)
|+.+..+.++.++....+. . ..+.........+..+..+...+..+.+.+|.+|++.|++++|+.+..+++ ++..
T Consensus 309 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~ 388 (432)
T PRK10406 309 RTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS 388 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH
Confidence 9887766554433322111 1 112222222222222333344456778899999999999999999988774 3445
Q ss_pred HHHHHHHHHhhccchhHH-HHHHHHHHHHHHheee
Q 011365 432 CPLVAVALVHGCHQTAAL-ILFELVILLSGISVLL 465 (487)
Q Consensus 432 ~~~i~g~l~~~~g~~~~~-~~~~~~~~~~~~~~~~ 465 (487)
.|.+.+.+ +..|.+... +..+++.+++.+..++
T Consensus 389 ~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 389 AEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 78877744 556644443 3344444444444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=251.87 Aligned_cols=370 Identities=18% Similarity=0.253 Sum_probs=246.4
Q ss_pred cCchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHH
Q 011365 10 VSPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIV 76 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~ 76 (487)
+.+|..+..+++....+ +++....+...+.+ ++++.+..+.+++ +.++.|.+ |+|||+++.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLD-AFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred cccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45666666666666666 44444343333332 3566665555442 34445655 99999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhh--
Q 011365 77 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-- 153 (487)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~-- 153 (487)
.+++.++++++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999988 8888999999999999999999999999999999999999887666
Q ss_pred hHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCC
Q 011365 154 WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD 233 (487)
Q Consensus 154 w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (487)
||+.|++.+++.++.++....+||++++...+++.++..+..++..+.+.
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 216 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH------------------------------ 216 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch------------------------------
Confidence 99999987777766666667778876532211111111110000000000
Q ss_pred CCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 011365 234 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN 313 (487)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (487)
.. +... +......+... ++.++.+...................+.|.+..+.
T Consensus 217 -~~------~~~~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 268 (405)
T TIGR00891 217 -RI------ANIV-------------------MTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD- 268 (405)
T ss_pred -hh------hhhh-------------------hhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-
Confidence 00 0000 00000111101 11112122222222223333334444556555321
Q ss_pred ccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-hHhccCCcchHHHHHHHHHH
Q 011365 314 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV-PLLFQQPKGLTTGLLFGARI 392 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (487)
.+.+..+.+.......++.++++++.+++.||+|||+.+..+..+..+..+ .+....+.+......++.++
T Consensus 269 --------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (405)
T TIGR00891 269 --------LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQM 340 (405)
T ss_pred --------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 125556667777888899999999999999999999988877766533332 22233333334444455566
Q ss_pred HHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 393 CITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
+..+..+....++.|.+|+++|++++|+.+...++|..++|.+.|++.|..|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~ 394 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEY 394 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666667778889999999999999999999999999999999999999998843
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=251.31 Aligned_cols=327 Identities=20% Similarity=0.260 Sum_probs=221.3
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchh
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF 125 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~ 125 (487)
.+.|.+ |+|||+++.++.++++++++++++++++. .++++|+++|++.|.. +....++.|++|+++|++
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 344555 99999999999999999999999999987 5888999999999998 878899999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHH
Q 011365 126 WMVIFQTFWTVGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEK 197 (487)
Q Consensus 126 ~~~~~~~~~~lG~~i~~~~~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~ 197 (487)
..+....+..+|.++++.+...+. ..+|||..|++.+++.++.......+||+|++...+++.++.+
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~----- 236 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK----- 236 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----
Confidence 999999999999999887776654 2479999999988877665555556777775422110000000
Q ss_pred HHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhC
Q 011365 198 IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 277 (487)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (487)
++ ....+.+++
T Consensus 237 ------------------------------------------------------------------~~---~~~~~~l~~ 247 (438)
T PRK09952 237 ------------------------------------------------------------------KR---IPVIEALLR 247 (438)
T ss_pred ------------------------------------------------------------------cc---CCHHHHHHH
Confidence 00 001112222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh
Q 011365 278 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK 357 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 357 (487)
++ +.........+.....+|....|.|.+.++.. +.+.........+.++...++.++.|+++||+|||
T Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~---------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr 316 (438)
T PRK09952 248 HP--GAFLKIIALRLCELLTMYIVTAFALNYSTQNL---------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR 316 (438)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 22 11222223344445556666667777653211 13332222334455666677888999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhc---cCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHH
Q 011365 358 LSMSSMFFCCCIFLVPLLF---QQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVC 432 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~ 432 (487)
+.+..+.++.+++.+.+.. ..+ .+......++.+++.+...+..+++..|.+|++.|+++.|+.+.... +++.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~ 396 (438)
T PRK09952 317 RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFT 396 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHH
Confidence 9888776665544332221 222 22223334445666677778888999999999999999999776654 899999
Q ss_pred HHHHHHHHhhcc--chhHHHHHHHHHHHHHHheeecccc
Q 011365 433 PLVAVALVHGCH--QTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 433 ~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
|.+.|++.+..+ +...+.+.+++.+++.+..+ ..++
T Consensus 397 p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 397 PFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 999999988653 44455555555555544443 3344
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-30 Score=248.89 Aligned_cols=345 Identities=20% Similarity=0.275 Sum_probs=227.0
Q ss_pred cCchHHHHHHHHHHHhcccccccccCccccchh-cccccccchhhh----------------HHHHHHHH--HhhhhHHH
Q 011365 10 VSPCSVLLICFAMIFCDIAFDVPELSWNTTTLL-NLHFSESDQSSF----------------SFSLFGRL--LLSFRKGF 70 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~G~~--r~Grr~~l 70 (487)
.+++.....++...++| .+|...++...+.+. +++.+..+...+ +..+.|.+ |+|||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 11 ESKARAILRVTSGNFLE-MFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 34455566666666666 566666665555543 555544432111 12334555 99999999
Q ss_pred HHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHH
Q 011365 71 LITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE 141 (487)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~ 141 (487)
+.+.++++++.++++++++++ .++++|+++|++.+.. +....++.|++|+++|++++++...+.++|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 4688999999999988 7778999999999999999999999988888888
Q ss_pred HHHHHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCc
Q 011365 142 AGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS 213 (487)
Q Consensus 142 ~~~~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (487)
+.+++.+. +.+|||+.|++..+...+........||++++.. + + ++ +
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~---------~---~----~~---~------ 224 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLA---------R---K----HR---P------ 224 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---------h---h----hc---c------
Confidence 88777652 4679999998765443222222222233211000 0 0 00 0
Q ss_pred chhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHH
Q 011365 214 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG 293 (487)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 293 (487)
+ ....++...++ ++.........+.
T Consensus 225 --------------------------------------------------~---~~~~~~~~~~~--~~~~~~~~~~~~~ 249 (434)
T PRK15075 225 --------------------------------------------------S---MREIFRSLAAN--WRIVLAGMLMVAM 249 (434)
T ss_pred --------------------------------------------------c---cccHHHHHHHh--HHHHHHHHHHHHH
Confidence 0 00012222221 1222222333334
Q ss_pred HHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011365 294 NAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 372 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 372 (487)
....++....|.|.+.++ .+ .+..+......+..++.+++.++.|++.||+|||+.+..+..+.++...
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 319 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLH----------LSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAY 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455566777888888754 23 5555556667777888899999999999999999987766544433221
Q ss_pred -hH-hc-cCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHHHHHHHHHhhccc
Q 011365 373 -PL-LF-QQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 373 -~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~~g~ 445 (487)
.+ .. ..+ .........+.+++.+...+..+.+..|.+|++.|+++.|+.+.+.. +++.++|.+.|++.|..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 320 PALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 11 11 112 22222333445566666667777889999999999999999766665 4588899999999998885
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=251.70 Aligned_cols=358 Identities=16% Similarity=0.152 Sum_probs=236.9
Q ss_pred hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 42 LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 42 ~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
.+++.+..+.+.+ ..++.|.+ |+|||+++.++.++.+++.++++++++++.+++.|++.|++.|.. +
T Consensus 51 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 130 (434)
T PRK11663 51 ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP 130 (434)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence 3555555554432 23445555 999999999999999999999999999999999999999999988 8
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCC
Q 011365 109 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGR 187 (487)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~ 187 (487)
...+++.|++|+++|++++++.+.+.++|.++++.+.+.+.+.+|||+.|++.+++.++. ++..+++||+|++...+..
T Consensus 131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 210 (434)
T PRK11663 131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV 210 (434)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc
Confidence 888999999999999999999999999999999999999998899999999988876655 4455567877653210000
Q ss_pred hHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccc
Q 011365 188 TAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (487)
.+..++. ++ .+++ ++++..
T Consensus 211 ~~~~~~~-~~------------------------------------------------~~~~------------~~~~~~ 229 (434)
T PRK11663 211 GEWRHDA-LE------------------------------------------------LAQQ------------QEGAGL 229 (434)
T ss_pred ccccccc-cc------------------------------------------------cchh------------ccccCC
Confidence 0000000 00 0000 000000
Q ss_pred hhh-HHH-HhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHH
Q 011365 268 GIT-ALL-ILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGL 344 (487)
Q Consensus 268 ~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (487)
..+ .++ ..++++ .++......+.....++.+..|.|.+..+ .+ .+....+...+...++..+++
T Consensus 230 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g----------~s~~~a~~~~~~~~~~~~~g~ 296 (434)
T PRK11663 230 SRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYMSETLG----------VDLVTANSAVSMFELGGFIGA 296 (434)
T ss_pred ChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHHHHHHHH
Confidence 000 111 123332 33333444444555566677788887733 23 666666777888889999999
Q ss_pred HHHHHHHhhh--hhhHHH-HHHHHHHHHHHHhH-hc-cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHH
Q 011365 345 LLAAAMVDRL--GRKLSM-SSMFFCCCIFLVPL-LF-QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVG 419 (487)
Q Consensus 345 ~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 419 (487)
++.|++.||+ ++|+.. ....+...+....+ .. ..+........+..+++.............|.+|++.|+++.|
T Consensus 297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 376 (434)
T PRK11663 297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATG 376 (434)
T ss_pred HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHH
Confidence 9999999998 333222 22111111111111 11 1222222222233333322223344556789999999999999
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 420 VASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 420 ~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+.++..++|..++|.+.|++.|..|+...+...+++.++..+..+...|+++++
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999999999999999999988888888888777766665555444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-30 Score=245.43 Aligned_cols=370 Identities=24% Similarity=0.357 Sum_probs=253.5
Q ss_pred cCchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHH
Q 011365 10 VSPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIV 76 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~ 76 (487)
+..|..+..++...+.+ +++....+...+.+ .+++.+..+.+. ++.++.|.+ |+|||+.+..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMD-GYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34455555555555544 33333332222222 344444443332 334445555 99999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhH
Q 011365 77 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 155 (487)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~ 155 (487)
.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 9999999999999999999999999999988 888899999999999999999999999999999999999999989999
Q ss_pred HHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCC
Q 011365 156 WLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT 234 (487)
Q Consensus 156 ~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (487)
..|++.++..++. ++...++||++++...+ ++++..+..++.......+. +..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 225 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-------------------------QSA 225 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-------------------------ccc
Confidence 9999886555554 55667788887654333 33333332222211110000 000
Q ss_pred CcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 011365 235 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK 314 (487)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (487)
..+ . ++..+......+.+++++..+.....+...+.....++....+.|.+.++.+
T Consensus 226 ~~~----~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 281 (398)
T TIGR00895 226 LPE----Q-------------------KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG- 281 (398)
T ss_pred ccc----c-------------------ccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 000 0 0000000012333444444455555555555566666667777786665444
Q ss_pred cccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHH
Q 011365 315 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (487)
.+....+.......++.+++.++.+++.||+++|+.............+......+.+......++.+++.
T Consensus 282 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 352 (398)
T TIGR00895 282 ---------FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFV 352 (398)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 56666677788888999999999999999999985544443333333333332445555666777888888
Q ss_pred HhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 395 TVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
+...+...++..|.+|+++|++++|+.+.+..+|..++|.+.|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 353 NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 888999999999999999999999999999999999999999875
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=249.31 Aligned_cols=340 Identities=14% Similarity=0.026 Sum_probs=253.4
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchh
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF 125 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~ 125 (487)
+..++.|.+ |+|||+++..+..+.+++.+..+. .++++.+++.|++.|++.+.. +...+++.|+.|+++|++
T Consensus 67 ~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (417)
T PRK10489 67 IGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQ 146 (417)
T ss_pred HHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHH
Confidence 445566766 999999999988887777665432 567899999999999998887 777789999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCC
Q 011365 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTK 205 (487)
Q Consensus 126 ~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (487)
+.++.....++|..+||.+++.+.+..+|++.|++.++..++..+....+|++++.. +++.++ .+ +
T Consensus 147 ~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~-~~---~-------- 212 (417)
T PRK10489 147 AGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPREHP-LR---S-------- 212 (417)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccccc-hH---H--------
Confidence 999999999999999999999998888999999988887777766666777654310 000000 00 0
Q ss_pred CCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHH
Q 011365 206 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 285 (487)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (487)
..+.++.+++++..+...
T Consensus 213 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 230 (417)
T PRK10489 213 --------------------------------------------------------------LLAGFRFLLASPVVGGIA 230 (417)
T ss_pred --------------------------------------------------------------HHHHHHHHHcChHHHHHH
Confidence 001344555554443333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 286 LLWLVFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
+.... ... ......+.|.+.++ .+ .+....+.......++.+++.++.+++.||.++++.+..+.
T Consensus 231 ~~~~~---~~~-~~~~~~~~p~~~~~~~g----------~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~ 296 (417)
T PRK10489 231 LLGGL---LTM-ASAVRVLYPALADEVWQ----------MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLST 296 (417)
T ss_pred HHHHH---HHH-HHhHHHhhHHHHHhccC----------CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHH
Confidence 22221 111 23444566766654 22 55556677778888899999999999999987777777777
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
++.+++.+.+...++.+...+..++.+++.+...+...+++.|..|++.||+++|+.+...++|..++|.+.|++.+..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 297 LGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 77777766666655555555666677777777777788899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHheeeccccCCCCCCCCCCcccc
Q 011365 445 QTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSK 483 (487)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
....++..+++..+.+++.....++.|+++.+|.++|..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 377 PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 888888888777777777767777888877777666654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=240.70 Aligned_cols=335 Identities=15% Similarity=0.087 Sum_probs=239.6
Q ss_pred hcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 42 LNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 42 ~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
++++.+..+.++.. +++.|.+ |+|||+++..+..+++++.+++++++|++.++++|+++|++.+.. +
T Consensus 37 ~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~ 116 (393)
T PRK09705 37 QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQA 116 (393)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhh
Confidence 46777766655433 3344555 999999999999999999999999999999999999999999988 6
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhcC-CCchhhhhcC
Q 011365 109 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSVTP-ESPRYLCLKG 186 (487)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~-~w~~~f~~~~~~~~i~~~~~~~l~-e~p~~~~~~~ 186 (487)
....++.+++| ++|++++++...+..+|..+++.+++++.++. +||..+.+.++..++.++.++... +.|+ +
T Consensus 117 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 190 (393)
T PRK09705 117 VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA-----S 190 (393)
T ss_pred hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----c
Confidence 66788889886 78999999999999999999999999888775 899988776666554443333221 1111 0
Q ss_pred ChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhcccc
Q 011365 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNM 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (487)
++. .+ .
T Consensus 191 --~~~-----------~~----------------------------------------------------------~--- 196 (393)
T PRK09705 191 --SHK-----------TT----------------------------------------------------------T--- 196 (393)
T ss_pred --ccC-----------CC----------------------------------------------------------c---
Confidence 000 00 0
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHH
Q 011365 267 GGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346 (487)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (487)
..++.++++ +.+......+.....++....|.|.+.++.+ .+....+...++..++.++++++
T Consensus 197 ----~~~~~l~~~---~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g----------~s~~~ag~~~~~~~i~~i~g~~~ 259 (393)
T PRK09705 197 ----TPVRVVFTP---RAWTLGVYFGLINGGYASLIAWLPAFYIEIG----------ASAQYSGSLLALMTLGQAAGALL 259 (393)
T ss_pred ----CCcccccCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CChhhhhHHHHHHHHHHHHHHHH
Confidence 000111221 2222333334445566677778888876544 66677788888999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC-CcchhHHHHHHHHHH
Q 011365 347 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP-TSVRTTGVGVASSIG 425 (487)
Q Consensus 347 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~ 425 (487)
.+++.||++||+.+..+..+.+++.+.+...++.. ......+.+++.+...+.......+..+ ++++++.+|+.+...
T Consensus 260 ~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 338 (393)
T PRK09705 260 MPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL-PVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIG 338 (393)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999988888777766655544322221 1222345566677777777666667765 578999999999999
Q ss_pred hHhHhHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHheeeccccCCCCC
Q 011365 426 RIGGMVCPLVAVALVHGCHQT-AALILFELVILLSGISVLLFPFETTGRG 474 (487)
Q Consensus 426 ~~g~~~~~~i~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
+++..++|.+.|++.|..|.+ ..+.+..++.++..++.+.+.||++++.
T Consensus 339 ~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 339 FIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 999999999999999998854 4445555555555666666777776654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=257.04 Aligned_cols=382 Identities=11% Similarity=0.083 Sum_probs=246.2
Q ss_pred hHHHHHHHHHHHhcccccccccCccccc-hhcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHH
Q 011365 13 CSVLLICFAMIFCDIAFDVPELSWNTTT-LLNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSA 79 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~ 79 (487)
+.++.++++.+.+. ..+...++...+. .++++.+..+.+++. .++.|.+ |+|||+++.++.+++++
T Consensus 28 ~~i~~~~~~~~~~~-y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 28 MQSYLVVFIGYLTM-YLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHH-HHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 44455555555543 2344444433333 346777666665533 3445555 99999999998888887
Q ss_pred HHHHHhh-----chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh-
Q 011365 80 AGLLSAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL- 152 (487)
Q Consensus 80 ~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~- 152 (487)
+.++.++ +++++.+++.|+++|++.+.. +...+++.|++|+++||+++|+...+.++|.++++++..++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 7766554 689999999999999999988 888899999999999999999999999999999999887766543
Q ss_pred --hhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCC
Q 011365 153 --GWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 229 (487)
Q Consensus 153 --~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (487)
+||..|.+.+++.++. ++.+++.+++|+..... +.++ ..++ .. . .
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~~~----~~-~-~---------------------- 234 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IFGE----PI-S-E---------------------- 234 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cccC----cc-c-h----------------------
Confidence 6999998888777766 44445556666421100 0000 0000 00 0 0
Q ss_pred CCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHH-HHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011365 230 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL-LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL 308 (487)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (487)
+ +++ .++.+......+ +..+++ +.++...+..++....+++...|.|.|
T Consensus 235 -~---------------~~~-----------~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~p~y 284 (467)
T PRK09556 235 -E---------------DKE-----------TESTDMTKWQIFVEYVLKN---PVIWLLCFANIFLYIVRIGIDNWSPVY 284 (467)
T ss_pred -h---------------hhc-----------cccccCcHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000000000011 224444 334444555555666666777888987
Q ss_pred hccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--hHhccCCcchHHHH
Q 011365 309 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV--PLLFQQPKGLTTGL 386 (487)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 386 (487)
.++. .+.+..+++.......++.+++.++.|+++||++||+.+.....+..+... .+....+.....+.
T Consensus 285 l~~~---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 285 AFQE---------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHc---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7432 126666667777778888999999999999999998876654433333222 22222333333344
Q ss_pred HHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhH-hHhHHHHHHHHHHh------------hccchhHHHHHH
Q 011365 387 LFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVALVH------------GCHQTAALILFE 453 (487)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~------------~~g~~~~~~~~~ 453 (487)
.++.|++..+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|++.| ..+|...++++.
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 44555443333333345667999999999999999999996 77999999999999 567777777776
Q ss_pred HHHHHHHHheeec
Q 011365 454 LVILLSGISVLLF 466 (487)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (487)
++.+++.+..++.
T Consensus 436 ~~~~~~~~~~~~~ 448 (467)
T PRK09556 436 IAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=244.44 Aligned_cols=329 Identities=17% Similarity=0.112 Sum_probs=233.7
Q ss_pred hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 42 LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 42 ~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
++++.+..+.++ +..++.|.+ |+|||+++.++.++.+++.+++++++|++.++++|++.|++.+.. +
T Consensus 31 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 110 (377)
T TIGR00890 31 RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYG 110 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356666555544 334455665 999999999999999999999999999999999999999999987 6
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH-HhcCCCchhhhhcCC
Q 011365 109 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPESPRYLCLKGR 187 (487)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~~~~~~~~ 187 (487)
.....+.+++| ++|+++.++...+.++|.++++++.+.+.+..+||+.|++.+++.++..+.. .+++++|+.. .+++
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN 188 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC
Confidence 66777888886 5799999999999999998877777777777899999999988887775444 4444433210 0000
Q ss_pred hHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccc
Q 011365 188 TAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (487)
.+. + +
T Consensus 189 ~~~-~---------------------------------------------------------------------~----- 193 (377)
T TIGR00890 189 IEV-S---------------------------------------------------------------------V----- 193 (377)
T ss_pred ccc-c---------------------------------------------------------------------h-----
Confidence 000 0 0
Q ss_pred hhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHH
Q 011365 268 GITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLA 347 (487)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (487)
...+.++.++++..+.... ..+...........+.+.+.++.+ .+....+.......++.++++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T TIGR00890 194 KDYTVWEMLRTPQFWVLYL---SFFLNAVSGLLLIGLYKPYGQSLG----------LSDGFLVLAVSISSIFNGGGRPFL 260 (377)
T ss_pred hhhhHHHHHcCccHHHHHH---HHHHHhHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0002334444433332222 222222222222233344443322 444445677778888999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcc--hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHH
Q 011365 348 AAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG 425 (487)
Q Consensus 348 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 425 (487)
+++.||++||+.+..+..+.+++.+.+.+.++.. ......++.+++.+...+....+..|.+|+++|+++.|+.+...
T Consensus 261 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 340 (377)
T TIGR00890 261 GALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK 340 (377)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 9999999999998888888877776665544322 22233455666666666777888999999999999999999999
Q ss_pred hHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 011365 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSG 460 (487)
Q Consensus 426 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 460 (487)
.+|..++|.+.|.+.+..|+...+.+.+++.+++.
T Consensus 341 ~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 341 AVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999999998877777766665543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=249.18 Aligned_cols=372 Identities=26% Similarity=0.334 Sum_probs=271.9
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
..+.|.+ ++|||+.++++.+++.++.+++++++|+++++++|++.|+|.|.. .+...+++|..|++.||...+..+.
T Consensus 106 ~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l 185 (513)
T KOG0254|consen 106 SLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQL 185 (513)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHH
Confidence 3444555 999999999999999999999999999999999999999999999 7788999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~-~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
...+|..++..++....+. ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+++++..+..
T Consensus 186 ~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~------- 258 (513)
T KOG0254|consen 186 FITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPE------- 258 (513)
T ss_pred HHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCc-------
Confidence 9999999996666555432 58999999999999998777899999999999999999999999988763311
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH-H
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL-V 290 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 290 (487)
+.+.+.++... .... +.........+++++++..+++...... .
T Consensus 259 --~~~~~~~~~~~--------------------~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~ 303 (513)
T KOG0254|consen 259 --DVEVELELLKI--------------------KLLV-------------EAEVAEGKASWGELFSPKVRKRLIIGLLLQ 303 (513)
T ss_pred --chHHHHHHHHH--------------------HHHH-------------hhhcccccccHHHhcCcchHHHHHHHHHHH
Confidence 11111111110 0000 0000000003555555545555554444 4
Q ss_pred HHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011365 291 FFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 370 (487)
.+.+...+....+|.+.+.+..+ ...+. .....+.++...++.++...+.||+|||+.++.+...+.++
T Consensus 304 ~fqq~tG~~~~~~Y~~~if~~~g----------~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~ 372 (513)
T KOG0254|consen 304 LFQQLTGINYVFYYSTTIFKSAG----------LKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC 372 (513)
T ss_pred HHHHHhCCceEEeehHHHHHhcC----------CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence 44444444566677788776555 33222 55666777788888889999999999999999999998888
Q ss_pred HHhHhcc----CC--------cch-HHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 371 LVPLLFQ----QP--------KGL-TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 371 ~~~~~~~----~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
.+++... .. .+. .....+....+..+..++.+.+.+|.+|.+.|+++.++...++++.+.+......
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~ 452 (513)
T KOG0254|consen 373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP 452 (513)
T ss_pred HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8776621 11 111 2222233334445556888889999999999999999999999998888877776
Q ss_pred HHHhhccchhHHHHHHHHHHHHHH-heeeccccCCCCCCCCCCc
Q 011365 438 ALVHGCHQTAALILFELVILLSGI-SVLLFPFETTGRGLSDSLP 480 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 480 (487)
.+.+..+....+..+..++.+... .++++.||+|+++.+|.+.
T Consensus 453 ~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 453 FITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 666655434556666666666666 7888889999999886554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=235.19 Aligned_cols=324 Identities=16% Similarity=0.166 Sum_probs=230.8
Q ss_pred chhcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch
Q 011365 40 TLLNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG 107 (487)
Q Consensus 40 ~~~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 107 (487)
..++++.+..+.+. +..++.|.+ |+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+..
T Consensus 46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 125 (394)
T PRK10213 46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGF 125 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHH
Confidence 33566666665443 334555665 999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhc
Q 011365 108 -PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLK 185 (487)
Q Consensus 108 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~ 185 (487)
+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.++||+.|++.++++++..+. ...+||+|+.
T Consensus 126 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---- 201 (394)
T PRK10213 126 WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---- 201 (394)
T ss_pred HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc----
Confidence 8888999999999999999999999999999999999999999999999999988777665433 3345654320
Q ss_pred CChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccc
Q 011365 186 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN 265 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
+ ++..
T Consensus 202 -~-~~~~------------------------------------------------------------------------- 206 (394)
T PRK10213 202 -P-SHQK------------------------------------------------------------------------- 206 (394)
T ss_pred -c-ccch-------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred cchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhccccccccccccCCccccccchhhhhhhhcchhHH
Q 011365 266 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLL-TTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGL 344 (487)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (487)
.+.++.++++..+..... .+......+....+ .|.+.++.| .+....+......+++.+++.
T Consensus 207 ----~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~g----------~s~~~~g~~~~~~~~~~iig~ 269 (394)
T PRK10213 207 ----QNTFRLLQRPGVMAGMIA---IFMSFAGQFAFFTYIRPVYMNLAG----------FGVDGLTLVLLSFGIASFVGT 269 (394)
T ss_pred ----hHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC----------CChhHHHHHHHHHHHHHHHHH
Confidence 022334444333332222 22222223333333 366654433 666666777778888999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHH
Q 011365 345 LLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSI 424 (487)
Q Consensus 345 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 424 (487)
++.+++.||.+++..............++....++.+......++.|++.+...+...+.+.+..| ++++++.++....
T Consensus 270 ~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 348 (394)
T PRK10213 270 SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAV 348 (394)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHH
Confidence 999999999654433333333333333333344455556666777888888888888888888887 4477888888888
Q ss_pred HhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 011365 425 GRIGGMVCPLVAVALVHGCHQTAALILFELVILLSG 460 (487)
Q Consensus 425 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 460 (487)
.++|..+||.+.|++.|..|....+...+++.++..
T Consensus 349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 899999999999999999887766666555444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=238.72 Aligned_cols=312 Identities=18% Similarity=0.083 Sum_probs=225.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc--------hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA--------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN 122 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~ 122 (487)
+..++.|.+ |+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+.. +...+++.|++|+++
T Consensus 66 i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (399)
T PRK05122 66 LSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH 145 (399)
T ss_pred HhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh
Confidence 334556766 9999999999999888877665543 25778999999999999988 777888999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHh
Q 011365 123 RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN 202 (487)
Q Consensus 123 r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~ 202 (487)
|++++++...+..+|.++++.+++.+.+..||+..+++.++..++..+.....|++++. +++..
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------- 209 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGERL------------- 209 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccch-------------
Confidence 99999999999999999999999999998999999887766655444333222222110 00000
Q ss_pred CCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHH
Q 011365 203 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIK 282 (487)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (487)
++++.+++ .++
T Consensus 210 --------------------------------------------------------------------~~~~~~~~-~~~ 220 (399)
T PRK05122 210 --------------------------------------------------------------------PFRRVLGR-VWP 220 (399)
T ss_pred --------------------------------------------------------------------hHHHHHHH-HHH
Confidence 11111111 011
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
.. .......+.+.....+.+.+..+.+ . ...+.......++.++++++.+++.||+++|+.+..
T Consensus 221 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 284 (399)
T PRK05122 221 YG----MGLALASIGFGTIATFITLYYAARG----------W--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIV 284 (399)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHcc----------c--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11 1111122233334445555543322 2 233455567778888899999999999999998888
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+..+.+++.+.+...++.+...+..++.+++.+..++.......|.+|+++|++++|+.+....+|..++|.+.|.+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 285 SLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777766666666666666677788888888888778888999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHheeec
Q 011365 443 CHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
.|+...+++.+++.+++.++..++
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 365 FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888887777777666555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=237.20 Aligned_cols=359 Identities=13% Similarity=0.104 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHhcccccccccCccccch-hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHHHHH
Q 011365 13 CSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIVTSA 79 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~~~~ 79 (487)
+.+...+++..+++ +.+....+...+.+ ++++.+..+.+.+ +..+.|.+ |+|||+++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 6 IKLTWISFLSYALT-GALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444445544 33334444333333 3566665555442 23344555 99999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc-hhhhHHH
Q 011365 80 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWL 157 (487)
Q Consensus 80 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-~~~w~~~ 157 (487)
+.++++++++++.+++.|+++|++.+.. +...+++.|++|+++|+++++......++|..++|.+.+.+.. ..+||+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999999987 7778899999999999999999999999999999998887754 5799999
Q ss_pred HHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcc
Q 011365 158 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237 (487)
Q Consensus 158 f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
|.+.+++.++..+..++ .+.|+.. +++.+ +++
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~~~--~~~~~-------------~~~-------------------------------- 196 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPALG--KHAPK-------------ADK-------------------------------- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCcccc--ccCcc-------------ccC--------------------------------
Confidence 99888777666444332 2222100 00000 000
Q ss_pred cccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 011365 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS 317 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (487)
+ ..+..+ .+.++...+..+.....++.+..|.|.+.++..
T Consensus 197 -------------------------~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---- 236 (394)
T PRK03699 197 -------------------------P-------VAKEKW----GIGVLFLAIAALLYILAQLTFISWVPEYAQKKF---- 236 (394)
T ss_pred -------------------------c-------cccccC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 0 000000 122333444445555566677788888874421
Q ss_pred ccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhh
Q 011365 318 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 397 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
+.+..+.+...+...++..+++++.+++.||+++|+.+.....+.++...++...++........++.|++.+..
T Consensus 237 -----g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 311 (394)
T PRK03699 237 -----GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAI 311 (394)
T ss_pred -----CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 266666777778888889999999999999999999888777766666555555555555555667777777778
Q ss_pred hHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 398 FTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
++...+...|..|.+ +++..+......++|..++|.+.|++.|..|+...++..+++.+++.+.....
T Consensus 312 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 312 YTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 888888888877644 67888999999999999999999999999998888887777776665544444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=234.30 Aligned_cols=323 Identities=16% Similarity=0.091 Sum_probs=226.8
Q ss_pred cccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH---hh-----chhHHHHHHHHHHHhh
Q 011365 43 NLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLS---AF-----APNYYLLLFFRCLVGL 102 (487)
Q Consensus 43 ~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~---~~-----~~~~~~l~~~r~l~G~ 102 (487)
+++.+..+.+. +..++.|.+ |+||||+++.+.+..+++.+.+ .+ .++++.+++.|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 45555555544 334566776 9999999999988777665432 21 3588999999999999
Q ss_pred hccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchh
Q 011365 103 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRY 181 (487)
Q Consensus 103 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~ 181 (487)
+.+.. +...+++.|+.|+++|++++++.+.+.++|..++|++++++.+.+|||..+.+..+..++........||.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH 204 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99987 77778999999999999999999999999999999999999888999988776655544433322222322110
Q ss_pred hhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhh
Q 011365 182 LCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTL 261 (487)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (487)
+++.+
T Consensus 205 ---~~~~~------------------------------------------------------------------------ 209 (392)
T PRK12382 205 ---AGERP------------------------------------------------------------------------ 209 (392)
T ss_pred ---cccCc------------------------------------------------------------------------
Confidence 00000
Q ss_pred hccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcch
Q 011365 262 ANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEF 341 (487)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (487)
+.++..+. .++.... .+.....+.....+.+.+.++.+ .+ ..+.......++.+
T Consensus 210 ---------~~~~~~~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~ 263 (392)
T PRK12382 210 ---------SLWSVVGL-IWKPGLG----LALQGVGFAVIGTFVSLYFASKG----------WA--MAGFTLTAFGGAFV 263 (392)
T ss_pred ---------hHHHHHHH-HHHhHHH----HHHHHHHHhHHHHHHHHHHHhcC----------Cc--hhHHHHHHHHHHHH
Confidence 01111110 0011111 11112223333444455543322 22 23444556677778
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHH
Q 011365 342 PGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVA 421 (487)
Q Consensus 342 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 421 (487)
+++++.|++.||+|+|+.+..+..+.+++.+.+...++.+......++.+++.+...+...+...|.+|+++|++++|+.
T Consensus 264 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (392)
T PRK12382 264 LMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY 343 (392)
T ss_pred HHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999999999988888877777766666655555556667777777777788888889999999999999999
Q ss_pred HHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 422 SSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 422 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
+....+|..++|.+.|++.|..|+...+.+.+++.+++.++.+..
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888888877777766655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=239.90 Aligned_cols=340 Identities=17% Similarity=0.155 Sum_probs=230.7
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
.+..++.|.+ |+|||+++.++.++.+++.++++++++++.++++|++.|++.+.. +....++.|++|+++|++++++
T Consensus 43 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 122 (399)
T TIGR00893 43 VVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSI 122 (399)
T ss_pred HHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666766 999999999999999999999999999999999999999999988 8888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCC
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS 208 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (487)
.....++|.++++.+++.+.+..+||+.|++.+++.++..+. ....||+|+.. +...++.++...+ + ...
T Consensus 123 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~---- 193 (399)
T TIGR00893 123 FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVG--G-LLA---- 193 (399)
T ss_pred HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcch--h-hcc----
Confidence 999999999999999999988899999999988887776444 44456655311 0001110000000 0 000
Q ss_pred CCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHH
Q 011365 209 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW 288 (487)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (487)
+ . + .++.++..+...++.++++ .++...
T Consensus 194 ----------------------~-~---------------~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~ 221 (399)
T TIGR00893 194 ----------------------E-Q---------------Q-----------GKGPSTPKKYQIKELLKDR---RVWGLA 221 (399)
T ss_pred ----------------------c-c---------------c-----------cccccCCCccchHHHhcCH---HHHHHH
Confidence 0 0 0 0000000111445555553 333444
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH--HHHHHHH-
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL--SMSSMFF- 365 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~- 365 (487)
+..+...........+.|.+.++.. +.+....+.......++.+++.++.+++.||++||+ .......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (399)
T TIGR00893 222 LGQFLVNIGLGFFLTWFPTYLVQER---------GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTA 292 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh---------cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 4445555555566667777664321 255555677778888889999999999999999985 1111111
Q ss_pred -HH-H-HHHHhHhcc-CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 366 -CC-C-IFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 366 -~~-~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.. . ......... .+...........+.+..+..+...++..|.+|+++|++++|+.+.+.++|..++|.+.|.+.|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 293 IIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 11 1 111111111 1122222223333333334678899999999999999999999999999999999999999999
Q ss_pred hcc-chhHHHHHHHHHHHHHHh
Q 011365 442 GCH-QTAALILFELVILLSGIS 462 (487)
Q Consensus 442 ~~g-~~~~~~~~~~~~~~~~~~ 462 (487)
..| +...+++.+++.+++.+.
T Consensus 373 ~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 373 TTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred CCCchhHHHHHHHHHHHHHHHH
Confidence 888 666666666665555444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=242.66 Aligned_cols=342 Identities=16% Similarity=0.176 Sum_probs=220.7
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch----hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
++.++.|.+ |+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+.. +.....+.|++|+++|+++
T Consensus 78 ~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~ 157 (452)
T PRK11273 78 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157 (452)
T ss_pred HHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence 334556666 99999999999999999999888763 7888999999999999888 7777888999999999999
Q ss_pred HHHHHHHHHHhHH-HHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 127 MVIFQTFWTVGTI-LEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 127 ~~~~~~~~~lG~~-i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++.+.+.++|.. .+|+++..+....+||+.|++.+++.++. ++..+++||+|+....+ +.++.++ + ..+
T Consensus 158 ~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~----~~~ 229 (452)
T PRK11273 158 VSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN---D----YPD 229 (452)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh---c----ccc
Confidence 9999999999874 45554434433459999999988877665 55667778877531111 0000000 0 000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHH-HHhhChHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL-LILLSPELIKS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 283 (487)
+ .+++ ++++......+ +.++++ +.
T Consensus 230 -------------~-----------~~~~----------------------------~~~~~~~~~~~~~~~~~~---~~ 254 (452)
T PRK11273 230 -------------D-----------YNEK----------------------------HEQELTAKQIFMQYVLPN---KL 254 (452)
T ss_pred -------------c-----------cccc----------------------------cCCCccHHHHHHHHHHcC---hH
Confidence 0 0000 00000000011 223444 33
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh--hhhHHH-
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSM- 360 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~- 360 (487)
++...+..+......+....+.|.++++.. +.+....+....+..++.+++.++.|+++||+ +||...
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~---------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVK---------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 344444444445556677778898886531 25555566667778888899999999999999 445432
Q ss_pred HHHHHHHHHHHHhHhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhH-HHHHHH
Q 011365 361 SSMFFCCCIFLVPLLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMV-CPLVAV 437 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~i~g 437 (487)
.....+..++.+.+.. ..+.+...+..+..+.+..........+..|.+|++.||+++|+.+...++|+.+ +|.+.|
T Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g 405 (452)
T PRK11273 326 VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 405 (452)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 2222222333222222 2222223333344444333333344456779999999999999999999988765 799999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHheeecc
Q 011365 438 ALVHGCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
++.|+.|+...+++.+++++++++....+.
T Consensus 406 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 406 YTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888777777666655555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=242.89 Aligned_cols=394 Identities=17% Similarity=0.251 Sum_probs=238.8
Q ss_pred CchHHHHHHHHHHHhcccccccccCccccch-hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHH
Q 011365 11 SPCSVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVT 77 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~ 77 (487)
.+|..+...+...+.+ +++....+...+.+ .+++.+..+.+. ++.++.|.+ |+|||+++.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 17 AQWKAFSAAWLGYLLD-GFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3445444544554444 33333333222222 355555554433 223344555 999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHH
Q 011365 78 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 156 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~ 156 (487)
+++.+++.++++++.+++.|++.|++.+.. +....++.|++|+++|++++++...+.++|..+++.+.+.+.+.++||+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 175 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA 175 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 999999999999999999999999999887 7788999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCc
Q 011365 157 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 236 (487)
Q Consensus 157 ~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (487)
.|++..+..++.++....+||++++...+++.++.++..+.....+
T Consensus 176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 221 (496)
T PRK03893 176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGE---------------------------------- 221 (496)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcch----------------------------------
Confidence 9988655555545555556766543211111100000000000000
Q ss_pred ccccccchhhhhhhhc-ccccchhhhhccccchhhH-------------HHHhhChHHHHHHHHHHHHHHHHHHHHHhhh
Q 011365 237 KEMARDEDSISEAKEM-KSEDSTSTLANSNMGGITA-------------LLILLSPELIKSTLLLWLVFFGNAFSYYGLV 302 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
+...+..... ................+.. +....+.+.++.........+......+...
T Consensus 222 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (496)
T PRK03893 222 ------HRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQ 295 (496)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHH
Confidence 0000000000 0000000000000000000 0000000001111111111111111222344
Q ss_pred hhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCc-
Q 011365 303 LLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPK- 380 (487)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~- 380 (487)
.+.|.+.+ +.+ .+....+...+...++.+++.++.|++.||+|+|+.+..+..+..+..+.+....+.
T Consensus 296 ~~lp~~l~~~~g----------~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (496)
T PRK03893 296 ALLPTYLKTDLG----------YDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGAN 365 (496)
T ss_pred HHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccH
Confidence 56777774 333 666666788888899999999999999999999998887766665554433332222
Q ss_pred -chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHH
Q 011365 381 -GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELV 455 (487)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~ 455 (487)
+......++.++...+..+...+++.|.+|++.|++++|+.+....+|+.++|.+.|.+.|..|+...+...+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 122222233333333445667778899999999999999999999999999999999999999877666554433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-35 Score=290.90 Aligned_cols=359 Identities=30% Similarity=0.445 Sum_probs=262.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhch---hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAP---NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT 138 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 138 (487)
|+|||+.+.++.++..++.++.++++ +++.+.++|++.|++.|.. +....++.|..|+++|++..++.+.+..+|.
T Consensus 72 ~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~ 151 (451)
T PF00083_consen 72 RYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGI 151 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999 9999999999999999998 8888999999999999999999999999999
Q ss_pred HHHHHHHHHhhch---hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcch
Q 011365 139 ILEAGIAWLVMPR---LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDW 215 (487)
Q Consensus 139 ~i~~~~~~~l~~~---~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+++..++..+... .+||..+.+.+++.++.++...++||||+|+..++|.+++++.+++.++.+..+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~------- 224 (451)
T PF00083_consen 152 LLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI------- 224 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-------
Confidence 9988877655433 459999999999998888788899999999999999999888877744321110000
Q ss_pred hhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHH-HHHHHHHHHHHHHH
Q 011365 216 EHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL-IKSTLLLWLVFFGN 294 (487)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 294 (487)
+++.++ .++. ++. ...++++++++. +++...........
T Consensus 225 ~~~~~~--------------------~~~~----------------~~~----~~~~~~l~~~~~~~~~~~~~~~l~~~~ 264 (451)
T PF00083_consen 225 EEIKAE--------------------KKES----------------QES----KASWRDLFRNKKYRKRLLIALLLQFFQ 264 (451)
T ss_pred cccccc--------------------cccc----------------ccc----ceeeeeccccccccccccccccccccc
Confidence 000000 0000 000 015666665533 34444433333333
Q ss_pred HH-HHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 011365 295 AF-SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP 373 (487)
Q Consensus 295 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 373 (487)
.+ .++....+.+.+.+..+ .+.. ........+...++.++..+++||+|||++++.+..+++++.+.
T Consensus 265 ~~~g~~~~~~~~~~i~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~ 332 (451)
T PF00083_consen 265 QFSGINFIFYYSPSIFENAG----------ISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLI 332 (451)
T ss_pred cccccccccccccccccccc----------cccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 22 23344455566654433 3332 33444555667777888889999999999998888887776666
Q ss_pred Hh-----ccCC----cchHHHHHHHHH-HHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 374 LL-----FQQP----KGLTTGLLFGAR-ICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 374 ~~-----~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
+. ...+ .........+.. ....+..+..+.+..|.+|++.|+++.|+....++++++++|.+...+.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 412 (451)
T PF00083_consen 333 LGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL 412 (451)
T ss_pred cccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 53 1121 112222222222 2223556778899999999999999999999999999999999999888887
Q ss_pred cchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCCc
Q 011365 444 HQTAALILFELVILLSGISVLLFPFETTGRGLSDSLP 480 (487)
Q Consensus 444 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
+....+.+++++.++..++.+++.||||+++++|.++
T Consensus 413 ~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 413 GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred cccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 7566788888888888888999999999999887653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=230.56 Aligned_cols=308 Identities=14% Similarity=0.111 Sum_probs=228.6
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch-----hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCch
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRG 124 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~ 124 (487)
.+..++.|.+ |+|||+++..+.++.+++.++..+++ +++.+++.|++.|++.+.. +...+++.|++|+++|+
T Consensus 48 ~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (365)
T TIGR00900 48 VVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT 127 (365)
T ss_pred HHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3456667776 99999999999999999988888887 9999999999999999998 88889999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++++.+.+..+|.+++|.+++.+.+..+||..|++.++..++..+....+++++.. .+++.+..++..++
T Consensus 128 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 198 (365)
T TIGR00900 128 QANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA--ASEIQALSNAVLRD------- 198 (365)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC--CccccccchhHHHH-------
Confidence 999999999999999999999999998999999998887766664444333221110 00000000000000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
....++.+++++..+..
T Consensus 199 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 215 (365)
T TIGR00900 199 ---------------------------------------------------------------TREGIKFVLKNPLLRTL 215 (365)
T ss_pred ---------------------------------------------------------------HHhHHHHHHcCcHHHHH
Confidence 00145555655444433
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLV-LLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 363 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 363 (487)
... .+.....+.... .+.|.+.++. .+.+....+.......++.+++.++.+++.||.+||+.+..+
T Consensus 216 ~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 283 (365)
T TIGR00900 216 LLL---ALLFNLVFAPAIVALFPYVQSKY---------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGA 283 (365)
T ss_pred HHH---HHHHHHHHHHHHHHHhHHHHHHH---------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 222 222222232222 4556655331 124555557777788888999999999999999999988887
Q ss_pred HHHHHHHHHhHhccCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 364 FFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
..+.+++...+.+..+ .+...+..++.+++.+...+...++..|.+|+++|+++.|+.+...+++..++|.+.|++.|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 284 IFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666665553 555566777888888888899999999999999999999999999999999999999999987
Q ss_pred cc
Q 011365 443 CH 444 (487)
Q Consensus 443 ~g 444 (487)
.|
T Consensus 364 ~g 365 (365)
T TIGR00900 364 LG 365 (365)
T ss_pred cC
Confidence 54
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=231.70 Aligned_cols=321 Identities=16% Similarity=0.114 Sum_probs=231.0
Q ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 55 SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 55 ~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
..++.|.+ |+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+..+....++.|++|+++|++++++...
T Consensus 70 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T PRK09874 70 ASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLST 149 (408)
T ss_pred HHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 34556766 9999999999999999999999999999999999999999866557677888999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
+..+|.+++|.+++.+.+..+||..|++.+++.++..+ ...++||+++.. ++.++ .+ .+
T Consensus 150 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~--------------- 209 (408)
T PRK09874 150 GGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM-LH-MR--------------- 209 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh-hH-HH---------------
Confidence 99999999999999998889999999998887776644 445556543210 00000 00 00
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh-HHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP-ELIKSTLLLWLV 290 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 290 (487)
+..+.+++ +..+......
T Consensus 210 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~-- 228 (408)
T PRK09874 210 -----------------------------------------------------------EVVTSLKNPKLVLSLFVTT-- 228 (408)
T ss_pred -----------------------------------------------------------HHHHhCcCCchHHHHHHHH--
Confidence 11111222 1112111111
Q ss_pred HHHHHHHHHhhhhhhhhhhccccccccccccCCccccc----cchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 291 FFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI----NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
+...........+.+.+..+.+ .+... .+....+.+++.+++.+..|++.||++||+.+..+..+
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 297 (408)
T PRK09874 229 -LIIQVATGSIAPILTLYVRELA----------GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIF 297 (408)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 1111122222233343332211 11111 13344455677778888999999999999998888877
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
..+..+.+...++.+...+..++.+++.+...+...+...+..|++++|+.+++.+....+|..++|.+.|.+.+..|+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~ 377 (408)
T PRK09874 298 SVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR 377 (408)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh
Confidence 77766666655566666666677888888888888888899999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHheeecc
Q 011365 447 AALILFELVILLSGISVLLFP 467 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (487)
..+.+.+++.+++.+..+...
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777766655443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=235.53 Aligned_cols=367 Identities=31% Similarity=0.490 Sum_probs=273.5
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
..++|.+ |+|||++++.+.++..++.++.++++|++.+++.|++.|++.+.. .+...++.|++++++|+.+..+ ..
T Consensus 135 ~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~ 213 (521)
T KOG0255|consen 135 SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GG 213 (521)
T ss_pred HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HH
Confidence 3344555 999999999999999999999999999999999999999999998 8888999999999999999999 66
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (487)
....+..++++.++++.. +||+.+++..++.++.++.+++.||+|+|+..+++.+++.+.+++..+.|+........
T Consensus 214 ~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~- 290 (521)
T KOG0255|consen 214 FFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL- 290 (521)
T ss_pred HHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH-
Confidence 666777777777777765 89999999999999887777777899999999999999999999887765222111000
Q ss_pred cchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChH-HHHHHHHHHHHH
Q 011365 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE-LIKSTLLLWLVF 291 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 291 (487)
.+... . .+..+.....+...+.++++.+ .++..+...+.+
T Consensus 291 ------~~~~~----------------------~-----------~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 331 (521)
T KOG0255|consen 291 ------LRLEL----------------------L-----------LRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW 331 (521)
T ss_pred ------HHHHH----------------------H-----------hhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH
Confidence 00000 0 0000000000111466777655 667777777778
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
+.....+++.......+. ..........+.....+....+...|++|||.....+..+..+++
T Consensus 332 ~~~~~~y~gl~~~~~~lg-----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~ 394 (521)
T KOG0255|consen 332 FVFSLVYYGLSLNVSGLG-----------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGL 394 (521)
T ss_pred HHHhHHHHhhhhhhhhcC-----------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 778888888765554422 111445555555777788888999999999999999999988888
Q ss_pred HhHhccCCcc---hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 372 VPLLFQQPKG---LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 372 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
+...+..... ...+...+..++.+..+...+.+..|++|+..|..+.+..+....++++++|.+...... ......
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~ 473 (521)
T KOG0255|consen 395 LLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLG 473 (521)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccch
Confidence 8877654332 345555666666677777779999999999999999999999999999999998764444 333333
Q ss_pred HHHHHHHHHHHHHheeeccccCCCCCCCCCCcccc
Q 011365 449 LILFELVILLSGISVLLFPFETTGRGLSDSLPSSK 483 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
+.+++....+.+.+..++.||++++.+.+...+.+
T Consensus 474 ~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 474 LILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 33356666677777767789999988876655444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=228.83 Aligned_cols=317 Identities=14% Similarity=-0.008 Sum_probs=220.7
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+++.++..+.+++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|.+.+++...
T Consensus 65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 144 (406)
T PRK15402 65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMAN 144 (406)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 4455665 999999999999999999999999999999999999999999887 7778899999999999999999998
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
...+|..++|.+++.+.+..+||+.|++.++..++..+ .....||+++.. ++..+.+ +
T Consensus 145 ~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~-------------- 203 (406)
T PRK15402 145 VALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLSLK----E-------------- 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccccHH----H--------------
Confidence 88999999999999998888999999998888777644 344566654310 0000000 0
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
...+++.+++++..+... +..
T Consensus 204 --------------------------------------------------------~~~~~~~~~~~~~~~~~~---~~~ 224 (406)
T PRK15402 204 --------------------------------------------------------LGRDYKLVLKNRRFVAGA---LAL 224 (406)
T ss_pred --------------------------------------------------------HHHHHHHHHcCcHHHHHH---HHH
Confidence 001445556654433322 222
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
+......+....+.|.+..+. .+.+....+.......++.+++.++.+++.||+++|+.+..+.++.+++.
T Consensus 225 ~~~~~~~~~~~~~~p~~~~~~---------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 225 GLVSLPLLAWIALSPVILISG---------EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 222222333334445554221 11444444555555666788899999999999999998888877766655
Q ss_pred HhHhcc-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 372 VPLLFQ-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 372 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
+.+... .+.+......++.+++.+...+......... +++++|++.++.+....++..+++.+.+.+.+..++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 296 LLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 554431 2233344556667777776666665555443 4478999999999999999999999999999887766
Q ss_pred hHHHHHHHHHHHHHHh
Q 011365 447 AALILFELVILLSGIS 462 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (487)
...+...+..++....
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 375 LFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=237.79 Aligned_cols=384 Identities=10% Similarity=0.023 Sum_probs=250.2
Q ss_pred ccccCchHHHHHHHHHHHhcccccccccCccc-cchhcccccccchhhh----------HHHHHHHH--HhhhhHHHHHH
Q 011365 7 MDTVSPCSVLLICFAMIFCDIAFDVPELSWNT-TTLLNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLIT 73 (487)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~ 73 (487)
.+..++|.++..++......++.. ..++... +...+++.+..+.+++ +.++.|.+ |+|||++++.+
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 90 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFP-KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG 90 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhh-cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence 444567888888877766543221 2222222 2234566665555443 23455666 99999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch
Q 011365 74 AIVTSAAGLLSAFAPNYYLLLF-FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 151 (487)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~ 151 (487)
.++.+++.++++++++++.+++ .|++.|++.+.. +...+++.++++ ++|+++.++...+..+|..++|++++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875 579999999876 666678889885 7899999999999999999999999999998
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCC
Q 011365 152 LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNE 231 (487)
Q Consensus 152 ~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (487)
+|||+.|++.+++.++..+..+++.+.+... +..+++.. ++ ..++
T Consensus 170 ~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~---------~~-~~~~----------------------- 214 (455)
T TIGR00892 170 FGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKSK---------EG-LPPD----------------------- 214 (455)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccccccc---------cc-CCCC-----------------------
Confidence 9999999999888776654444443222100 00000000 00 0000
Q ss_pred CCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 011365 232 DDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNG 311 (487)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (487)
...+ +.+. . ...++..+..++ ++++++.. +......+.....++....+.|.+.++
T Consensus 215 --~~~~---~~~~---------~------~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~~ 270 (455)
T TIGR00892 215 --GSTK---KLSK---------K------STAEKINRFLDF-SLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAKD 270 (455)
T ss_pred --Cccc---cccc---------c------chhhhhhhhcch-HHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 0000 0000 0 000000000012 24444332 233333344444555555666766654
Q ss_pred ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh--hhhHHHH--HHHHHHHHHHHhHhccCCcchHHHHH
Q 011365 312 QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS--SMFFCCCIFLVPLLFQQPKGLTTGLL 387 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
.+ .+....+...++.+++.++++++.+++.||. ++|+... .+.++.+++.+......+.+...+..
T Consensus 271 ~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 271 KG----------VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred cC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 43 6666667888888899999999999999973 3333332 23333333333444455556566677
Q ss_pred HHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q 011365 388 FGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGI 461 (487)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~ 461 (487)
++.+++.+...+...+++.|.+|++++++++|+.+....+|++++|.+.|.+.|..+ +...+++.+++.+++.+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 788888888888899999999999999999999999999999999999999999875 55666665555544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=231.62 Aligned_cols=334 Identities=16% Similarity=0.165 Sum_probs=224.9
Q ss_pred HHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 58 LFGRL--LLSFRKGFLITAIVTSAAGLLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 58 ~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
+.|.+ |+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+.. +....++.|++|+++|++++++...
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555 9999999999999999998887554 56888999999999999999 8888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhch-hhhHHHHHHhHHHHHHHHHHHH-hcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYS-VTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGN 210 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~-~~w~~~f~~~~~~~~i~~~~~~-~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (487)
+..+|.++++++++.+.+. .+||..|++.++++++..+.++ +.+|+|+... +.+ ++.++..++ ...++
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~~~i~~---~~~~~----- 244 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CIS-KFEKKYINS---SLQGQ----- 244 (465)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCC-HHHHHHHHh---hcccc-----
Confidence 9999999999999999888 4999999999988887755444 4566664211 111 111111100 00000
Q ss_pred CCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHH
Q 011365 211 LVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (487)
++ ..+ ...+++++++++ .++...+.
T Consensus 245 ---------------------~~---------------------------~~~----~~~~~~~~~~~~---~~~~~~~~ 269 (465)
T TIGR00894 245 ---------------------KG---------------------------STR----QSLPIKAIPKSL---PVWAIWFA 269 (465)
T ss_pred ---------------------cC---------------------------CCC----CCCCHHHHhcCH---HHHHHHHH
Confidence 00 000 001466667664 34445556
Q ss_pred HHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH--------HHH
Q 011365 291 FFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS--------MSS 362 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~~ 362 (487)
.++....++.+..|.|.++++.. +.+....+....+..++..++.++.|++.||+++|+. +..
T Consensus 270 ~~~~~~~~~~~~~~lp~~l~~~~---------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 270 IFGHFWLYTILPTYLPTFISWVL---------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 66666777777888898875421 2566666777788889999999999999999865421 111
Q ss_pred HHHH--HHHHHHhHhc-cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 363 MFFC--CCIFLVPLLF-QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 363 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
+... .++..+.... ..+.........+.+.+.+...+.......|..|+ .+|.+.|+.+..+.+++.++|.+.|++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 1111 1111111222 22233333334444444444455555566677765 799999999999999999999999988
Q ss_pred Hhhc--c-chhHHHHHHHHHHHHHHheeec
Q 011365 440 VHGC--H-QTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 440 ~~~~--g-~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
.+.. + +...+.+.+++.+++.++....
T Consensus 420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred eCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 8753 2 4556666666666666555543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=225.38 Aligned_cols=337 Identities=15% Similarity=0.098 Sum_probs=225.9
Q ss_pred cchhcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHh---h-chhHHHHHHHHHHHhh
Q 011365 39 TTLLNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSA---F-APNYYLLLFFRCLVGL 102 (487)
Q Consensus 39 ~~~~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~ 102 (487)
+..++++.+..+.+. +..++.|.+ |+|||+++..+..+.+++.+++. + .++++.+++.|++.|+
T Consensus 38 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~ 117 (402)
T TIGR00897 38 PFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGL 117 (402)
T ss_pred HHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHc
Confidence 334455555555443 334556666 99999999999999988876542 3 3578889999999999
Q ss_pred hccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhH-HHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCc
Q 011365 103 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT-ILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESP 179 (487)
Q Consensus 103 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p 179 (487)
+.+.. +...+.+.+++|+++|++++|+.+.+.++|. +++|.+++.+.+..||+..++......++..+ ..++.++.+
T Consensus 118 g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (402)
T TIGR00897 118 GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIF 197 (402)
T ss_pred chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 98877 6667888899999999999999999999997 58999999988888876665544433333322 233334322
Q ss_pred hhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchh
Q 011365 180 RYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTS 259 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (487)
+.. .++++++.+
T Consensus 198 ~~~-~~~~~~~~~------------------------------------------------------------------- 209 (402)
T TIGR00897 198 TPQ-HMQTREKFS------------------------------------------------------------------- 209 (402)
T ss_pred Ccc-cccCCcchh-------------------------------------------------------------------
Confidence 100 000000000
Q ss_pred hhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhc
Q 011365 260 TLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 339 (487)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (487)
+....++.+++++. ++...+..++....+++...+.|.+.++.+ .+..+.+.......++
T Consensus 210 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g----------~s~~~~~~~~~~~~~~ 269 (402)
T TIGR00897 210 -------ELGKAATILFTNPN---VLLGGMVRIINTIGLFGFAVFLPMFVAELG----------FSTSEWLQIWGTFFFT 269 (402)
T ss_pred -------hHHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHH
Confidence 00013445566543 333334444555666777778888876544 5666666666777889
Q ss_pred chhHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHhHhc-----cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc
Q 011365 340 EFPGLLLAAAMVDRLGRKLSMS-SMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV 413 (487)
Q Consensus 340 ~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 413 (487)
..+++++.|++.||++||+.+. .+.+..++..+.+.. .++.+...+..++.+++.+...+. .....|..| ++
T Consensus 270 ~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~ 347 (402)
T TIGR00897 270 NIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH 347 (402)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch
Confidence 9999999999999999887653 233333332222211 123334445556666666655443 445566655 57
Q ss_pred hhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheee
Q 011365 414 RTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 414 ~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
|++++|+.+....+++.++|.+.|.+.|..|+...+++.+++.++..++..+
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888777776655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=228.08 Aligned_cols=313 Identities=24% Similarity=0.284 Sum_probs=222.8
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHhhhccch-HHHHHHHHhhcCCCC
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN 122 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~ 122 (487)
++.++.|.+ |+|||+++..+.++.+++.++++++++++ .+++.|+++|++.+.. +....++.|++++++
T Consensus 50 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred hHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 345666776 99999999999999999999999999875 4788999999999988 888899999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHhh--------chhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHH
Q 011365 123 RGFWMVIFQTFWTVGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHV 194 (487)
Q Consensus 123 r~~~~~~~~~~~~lG~~i~~~~~~~l~--------~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~ 194 (487)
|+++.++...+..+|.++++.++..+. +.++||..|++.+++.++..+....+||+|++...+++.+
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 204 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK----- 204 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc-----
Confidence 999999999999999999998876653 3568999999888777766665556666653210000000
Q ss_pred HHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHH
Q 011365 195 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 274 (487)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (487)
+ ...+.++
T Consensus 205 ----------~--------------------------------------------------------------~~~~~~~ 212 (394)
T TIGR00883 205 ----------K--------------------------------------------------------------KRGPIRE 212 (394)
T ss_pred ----------c--------------------------------------------------------------ccCCHHH
Confidence 0 0002333
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh
Q 011365 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL 354 (487)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 354 (487)
.++++. +.++......+.....++....+.|.+.++. .+.+....+.......+...++.++.+++.||+
T Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 282 (394)
T TIGR00883 213 TLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQT---------LGLSANSALLVLMLSLILFFITIPLSGALSDRI 282 (394)
T ss_pred HHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333322 2233444444555555666666777776321 125555556677778888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHH-Hh-Hhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHH-HHHhHhH
Q 011365 355 GRKLSMSSMFFCCCIFL-VP-LLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVAS-SIGRIGG 429 (487)
Q Consensus 355 g~r~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~ 429 (487)
|||+.+.....+..+.. .. ... ..+.+......++.+++.+...+...+++.|.+|++.|+++.++.+ ....+|.
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~ 362 (394)
T TIGR00883 283 GRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG 362 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence 99987765444433322 11 222 2334444455666777777888889999999999999999999854 4456888
Q ss_pred hHHHHHHHHHHhhcc-chhHHHHHH
Q 011365 430 MVCPLVAVALVHGCH-QTAALILFE 453 (487)
Q Consensus 430 ~~~~~i~g~l~~~~g-~~~~~~~~~ 453 (487)
.++|.+.|++.|+.| +....+...
T Consensus 363 ~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 363 GFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred hHHHHHHHHHHHHcCcchhHHHHHH
Confidence 899999999999988 444443333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=232.99 Aligned_cols=362 Identities=17% Similarity=0.173 Sum_probs=229.4
Q ss_pred cchhcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc----hhHHHHHHHHHHHhh
Q 011365 39 TTLLNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA----PNYYLLLFFRCLVGL 102 (487)
Q Consensus 39 ~~~~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~ 102 (487)
+.+.+.+.+..+.+++. ..+.|.+ |+|||+++.++.++.+++.++..+. ++++.+.+.|++.|+
T Consensus 51 p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 130 (438)
T TIGR00712 51 PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW 130 (438)
T ss_pred HHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 33344455555554432 2333444 9999999999999999998887764 467788899999999
Q ss_pred hccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc-hhhhHHHHHHhHHHHHHH-HHHHHhcCCCc
Q 011365 103 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGLSAFPSSLL-LLLYSVTPESP 179 (487)
Q Consensus 103 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p 179 (487)
+.|.. +.....+.|++|+++|++++++.+.+.++|..+++.+.+.... ..+||..|++.+++.++. ++.++++||+|
T Consensus 131 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 131 FQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99988 7778889999999999999999999999999999887765443 579999999988887776 45566677776
Q ss_pred hhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchh
Q 011365 180 RYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTS 259 (487)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (487)
+....+ +.++. + ++ .+++ ..++ .+
T Consensus 211 ~~~~~~-~~~~~-------~--~~--~~~~-------------------~~~~---------~~---------------- 234 (438)
T TIGR00712 211 QSCGLP-PIEEY-------R--ND--YPDD-------------------YNEK---------AE---------------- 234 (438)
T ss_pred HhcCCC-Cchhc-------c--cc--cccc-------------------cccc---------cc----------------
Confidence 421100 00000 0 00 0000 0000 00
Q ss_pred hhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhc
Q 011365 260 TLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 339 (487)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (487)
++. .......+.+++++..+ ...+..+......++...+.|.+.++. .+.+....+....+..++
T Consensus 235 --~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~l~~~---------~g~s~~~~~~~~~~~~~~ 299 (438)
T TIGR00712 235 --QEL-TAKEIFMQYVLPNKLLW---YIAIANVFVYLLRYGVLDWSPTYLKEV---------KHFALDKSSWAYFLYEYA 299 (438)
T ss_pred --ccc-chHHHHHHHHccCchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHc---------cCCChhhHHHHHHHHHHH
Confidence 000 00000112344443333 333333334444566677888887542 125666667777788888
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHHH---HHHHHhHhcc--CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcch
Q 011365 340 EFPGLLLAAAMVDRLGRKLSMSSMFFCC---CIFLVPLLFQ--QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVR 414 (487)
Q Consensus 340 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 414 (487)
.++++++.|++.||+++++....+.... .++.+.+... .+.+......+..+++..+..........|.+|++.|
T Consensus 300 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T TIGR00712 300 GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 379 (438)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhhe
Confidence 9999999999999996433222222211 1122222221 1222222233333333222223333567799999999
Q ss_pred hHHHHHHHHHHhHhH-hHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 415 TTGVGVASSIGRIGG-MVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 415 ~~~~g~~~~~~~~g~-~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
++++|+.+...++++ +++|.+.|.+.|..|+...+.+.+++.+++.+..+++.+|.|
T Consensus 380 g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 380 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999988875 689999999999999888888777777777777777776655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=223.85 Aligned_cols=294 Identities=13% Similarity=0.057 Sum_probs=209.5
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|++++++...
T Consensus 63 ~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 142 (400)
T PRK11646 63 GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMM 142 (400)
T ss_pred HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556776 999999999999999999999999999999999999999998877 7778999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
..++|..+||.+++++. .++||+.|++.++..++.. +..+++||.+. +++.++.
T Consensus 143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~-------------------- 197 (400)
T PRK11646 143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STVRTPV-------------------- 197 (400)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccchhh--------------------
Confidence 99999999999999998 6899999999887766653 33444454211 0000000
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
..+++.+++++....... ..
T Consensus 198 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~---~~ 217 (400)
T PRK11646 198 ---------------------------------------------------------REGMTRVLRDKRFVTYVL---TL 217 (400)
T ss_pred ---------------------------------------------------------HHHHHHHHcCchHHHHHH---HH
Confidence 003444444433222221 11
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHH-hhhhhhHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMV-DRLGRKLSMSSMFFCCCIF 370 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-dr~g~r~~~~~~~~~~~~~ 370 (487)
+.....+.....+.|.+.++.+ .++...+....+..+....+....+++. ||++.++.+..+..+.+++
T Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~----------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 287 (400)
T PRK11646 218 TGYYMLAVQVMLMLPIMVNDIA----------GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLS 287 (400)
T ss_pred HHHHHHHHHHHHhhhhhHHhhc----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2222222223445677665433 3333445555555555554444445555 4566666666676667766
Q ss_pred HHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 371 LVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
.+.+...++.+.......+.+.+.+...|...+++.+..|+++||+++|+.+....+|..++|.+.|++.|..+
T Consensus 288 ~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 288 MFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 66665555555444555566677777778888999999999999999999999999999999999999999753
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=230.80 Aligned_cols=356 Identities=13% Similarity=0.064 Sum_probs=235.9
Q ss_pred hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 42 LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 42 ~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
.+++.+..+.+++ ..++.|.+ |+|||++++++.++.+++.+++++++|++.++++|+++|+|.+.. +
T Consensus 34 ~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~ 113 (495)
T PRK14995 34 MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVP 113 (495)
T ss_pred HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666655554443 23455666 999999999999999999999999999999999999999999988 7
Q ss_pred HHHHHHHhhc-CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcC
Q 011365 109 VLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKG 186 (487)
Q Consensus 109 ~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~ 186 (487)
.....+.+.+ |+++|++++++.....++|..+||.+++++.++.+||+.|++...++++. ++...++|++|... ++
T Consensus 114 ~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~ 191 (495)
T PRK14995 114 ATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQ 191 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CC
Confidence 7777776665 67899999999999999999999999999999999999999988777766 44556677765321 11
Q ss_pred ChHHHHHHHH------HHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhh
Q 011365 187 RTAEARHVLE------KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTST 260 (487)
Q Consensus 187 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (487)
+.+....... .....+..... .. ........... ... ....-...
T Consensus 192 ~~d~~g~~~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~----------~~~----~l~~f~~~------------ 242 (495)
T PRK14995 192 PLNLGHALMLIVAILLLVYSAKTALKG--FL-SLWVTSLTLLT----------GAL----LLGLFIRT------------ 242 (495)
T ss_pred CCChHhHHHHHHHHHHHHHHHHhcccc--CC-chHHHHHHHHH----------HHH----HHHHHHHH------------
Confidence 1111110000 00000000000 00 00000000000 000 00000000
Q ss_pred hhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcc
Q 011365 261 LANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAE 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (487)
+.+...+..+ .++++++. +....+..+.....+++...+.|.+++.. .+.+..+++.......++.
T Consensus 243 -e~~~~~p~~~-~~lf~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lq~v---------~g~s~~~ag~~~~~~~~~~ 308 (495)
T PRK14995 243 -QLAASRPMID-MRLFTHRI---ILSGVVMAMTAMITLVGFELLMAQELQFV---------HGLSPLEAGMFMLPVMVAS 308 (495)
T ss_pred -HhcCCCCCcC-HHHhCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHH
Confidence 0000000001 23444432 22333333444444555566667666432 1366777788888888999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc---CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHH
Q 011365 341 FPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTG 417 (487)
Q Consensus 341 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (487)
.++.++.|++.||+|+|+.+..+.++.+++.+.+... .+.+......++.|++.+...+.......+..|+++++.+
T Consensus 309 ~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~ 388 (495)
T PRK14995 309 GFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAA 388 (495)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchH
Confidence 9999999999999999998888887777666554432 2334445567778888888888888888899999999999
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 418 VGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 418 ~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
.++.++...+|+.+|+.+.|.+.+.
T Consensus 389 ~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 389 GAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988763
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=230.20 Aligned_cols=325 Identities=13% Similarity=0.085 Sum_probs=208.0
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFW 134 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 134 (487)
.+.|.+ |+|||+++..+.++++++.++++++++++.++++|++.|++.+.......++.|++|+++|++++++.....
T Consensus 89 ~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~ 168 (476)
T PLN00028 89 LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWG 168 (476)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHH
Confidence 444555 999999999999999999999999999999999999999998866445567899999999999999998777
Q ss_pred HHhHHHHHHHHHHhh----c-----hhhhHHHHHHhHHHHHHHHHHHHhcCC-CchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 135 TVGTILEAGIAWLVM----P-----RLGWRWLLGLSAFPSSLLLLLYSVTPE-SPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 135 ~lG~~i~~~~~~~l~----~-----~~~w~~~f~~~~~~~~i~~~~~~~l~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
++|..+++.+...+. + ..|||+.|++.+++.++..+..+++++ .|+ ++.++.. +...
T Consensus 169 ~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~~- 235 (476)
T PLN00028 169 NLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSGT- 235 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcCc-
Confidence 777777766554432 1 258999999999888777555555543 332 1100000 0000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
..+......+++.++++. +
T Consensus 236 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~---~ 254 (476)
T PLN00028 236 ----------------------------------------------------------MPKDSFSKVLRYGVTNYR---T 254 (476)
T ss_pred ----------------------------------------------------------cccccHHHHHHHHHcCch---h
Confidence 000000113444444422 2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH------
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL------ 358 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------ 358 (487)
+...+.++......+....+.|.+..+. .+.+...++...++..++.++++++.|+++||++||+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~ 325 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDR---------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRL 325 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhH
Confidence 3333333333444445555666665332 1266666677888889999999999999999998652
Q ss_pred -HHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 359 -SMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 359 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
.......+.++..+.+....+........++.+++.....+..+++..+..| +++|++.|+.+..+.+|+.++|.+.+
T Consensus 326 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 326 WALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH
Confidence 2223333333333333334343334444455556555556666777777655 67999999998877777777777654
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 438 ALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
..+..++...+++.+++.+++.++.++.
T Consensus 405 -~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 405 -TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred -hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 1122345666777766666665554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=221.45 Aligned_cols=315 Identities=12% Similarity=0.069 Sum_probs=213.1
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
++.++.|.+ |+|||+++.++.++.+++.+++++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++.
T Consensus 53 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
T PRK10091 53 VGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM 132 (382)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence 445566766 999999999999999999999999999999999999999999988 77778889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
..+..+|..+++++++++.+..+||+.|++.++..++.. ....++||.++ +.+.+ .++
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~-~~~---------------- 191 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG-LRE---------------- 191 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC-HHH----------------
Confidence 999999999999999999888899999999888776664 34455676532 00000 000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
.++. ++++..+. ...
T Consensus 192 -------------------------------------------------------------~~~~-~~~~~~~~---~~~ 206 (382)
T PRK10091 192 -------------------------------------------------------------QFHF-LRSPAPWL---IFA 206 (382)
T ss_pred -------------------------------------------------------------HHHH-hcChHHHH---HHH
Confidence 1111 22221121 111
Q ss_pred HHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
..+......+....+.+.+.. ..+ .+....+.......++.++++++.+++.||+++|+.+..+..+.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~ 276 (382)
T PRK10091 207 ATMFGNAGVFAWFSYIKPYMMFISG----------FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIV 276 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHH
Confidence 111111222222223333332 222 566666788888899999999999999999999998888877777
Q ss_pred HHHHhHhc-cCCcchHHHHHHHHHHHHHhhhHHHh-hhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-cc
Q 011365 369 IFLVPLLF-QQPKGLTTGLLFGARICITVTFTVVY-VYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC-HQ 445 (487)
Q Consensus 369 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~ 445 (487)
++.+.+.. .++.+......++.+++..+..+... ....+..|++.++.+ ..+....+|..++|.+.|++.|.. ++
T Consensus 277 i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 277 LALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAY 354 (382)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCc
Confidence 76655443 33333334444444444444333333 344455555555554 346678899999999999999964 55
Q ss_pred hhHHHHHHHHHHHHHHheeec
Q 011365 446 TAALILFELVILLSGISVLLF 466 (487)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~ 466 (487)
...+...+++..+.......+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 355 NYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444433333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=220.77 Aligned_cols=413 Identities=22% Similarity=0.301 Sum_probs=289.6
Q ss_pred chHHHHHHHHHHHhcccccccccCccccchhccccccc-------------------chhhhHHHHHHHH--HhhhhHHH
Q 011365 12 PCSVLLICFAMIFCDIAFDVPELSWNTTTLLNLHFSES-------------------DQSSFSFSLFGRL--LLSFRKGF 70 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~G~~--r~Grr~~l 70 (487)
....+.++....+.| +||...++...+.++.+..... ....+++.++|.+ ++|||+++
T Consensus 39 ~fk~i~iAG~GfftD-sYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY 117 (538)
T KOG0252|consen 39 HFKAIIIAGMGFFTD-SYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY 117 (538)
T ss_pred HHHHHHHhhhhhccc-chhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 345666777778888 7877777655555543322211 1222456667777 99999999
Q ss_pred HHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHH
Q 011365 71 LITAIVTSAAGLLSAFAP-------NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 142 (487)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~ 142 (487)
...+++..+++++++++. -..++.+.|++.|+|.|+- |...+..+|...+++||...+...+..+.|.+.|.
T Consensus 118 G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 118 GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence 999999999999887752 2567888999999999999 88888999999999999999998888888888877
Q ss_pred HHHHHhhc---------------hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcC-ChHHHHHHHHHHHhHhCCCC
Q 011365 143 GIAWLVMP---------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG-RTAEARHVLEKIAKINGTKL 206 (487)
Q Consensus 143 ~~~~~l~~---------------~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 206 (487)
+++-.+.. ..=||..+.+..++.++.+...+.+||++++..... +.+++.+ +.. ++.
T Consensus 198 ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~~----k~~ 270 (538)
T KOG0252|consen 198 IVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG---DMK----KVL 270 (538)
T ss_pred HHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh---ccc----ccc
Confidence 77665431 123999999999999999999999999998752222 2222221 000 000
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHH
Q 011365 207 PSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
+. ++++.+++ +...+...+....+...+...+-+.++.
T Consensus 271 ~~-----------------------------~~~~~~~~-------------~~~~~~~~~~~~~F~~~f~~~hg~~Llg 308 (538)
T KOG0252|consen 271 SV-----------------------------DIEAESTA-------------ESDVPPPSNSFGLFSRLFLRWHGKHLLG 308 (538)
T ss_pred cc-----------------------------ccchhhcc-------------ccCCCCcccccchHHHHHHHHHHHHHHH
Confidence 00 00000000 0000001111113444444446677788
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccc----cccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSR----DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
....+|.....+|....+...+.+..+.-.. .... ..+-....+...+.++|..+...++|++|||++.+.
T Consensus 309 t~~~WFllDiafy~~nL~~s~I~~~ig~~~~-----~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 309 TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPS-----ANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHhhhhhhhccccHHHHHHHhhccCCC-----cchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 8889999999999999999888865541000 0000 011223445556667788889999999999999999
Q ss_pred HHHHHHHHHHhHhccCCc-----chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 363 MFFCCCIFLVPLLFQQPK-----GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
+++++.+..+.+....+. ...+...+...++..+.......+.+|.+|.+.|++..|+....+..|++++...+.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999998888865441 112223333344455666777889999999999999999999999999999999999
Q ss_pred HHHh-----hccchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCCc
Q 011365 438 ALVH-----GCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLP 480 (487)
Q Consensus 438 ~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
++.+ ..|....+++++++..+..++.+++ ||+++++++|...
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~ 510 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISN 510 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcC
Confidence 9999 7778888999999988887777666 5999998877643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=226.36 Aligned_cols=344 Identities=16% Similarity=0.120 Sum_probs=222.2
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|+++.++...
T Consensus 62 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (471)
T PRK10504 62 LPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTL 141 (471)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4445655 999999999999999999999999999999999999999999998 8888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHH---H---HhHhCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEK---I---AKINGTK 205 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~---~---~~~~~~~ 205 (487)
..++|..++|.+++.+.+..+||+.|.+......+..+. ....|+.+. .+.+.+........ . ...++.+
T Consensus 142 ~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 218 (471)
T PRK10504 142 PGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSK 218 (471)
T ss_pred HHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999899999999987776666433 344454432 11111111110000 0 0000000
Q ss_pred CCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHH
Q 011365 206 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 285 (487)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (487)
.. .. ........-... .........++. + ......+. ++++++.++..+
T Consensus 219 ~~-~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~------------~-~~~~~~~~-~l~~~~~~~~~l 267 (471)
T PRK10504 219 GL-GL-SPLAIAGLVAVG---------------VVALLLYLLHAR------------N-NNRALFSL-KLFRTRTFSLGL 267 (471)
T ss_pred cC-Cc-chHHHHHHHHHH---------------HHHHHHHHHHHh------------c-CCCCccCH-HHhcccchHHHH
Confidence 00 00 000000000000 000000000000 0 00000022 245554443332
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHH
Q 011365 286 LLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 365 (487)
...+.....+.....+.|++.+.. .+.+....+.......++.+++.++.+++.||+|+|+.+..+..
T Consensus 268 ---~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~ 335 (471)
T PRK10504 268 ---AGSFAGRIGSGMLPFMTPVFLQIG---------LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTL 335 (471)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 222233333333444556665421 12555555667777777788888999999999999999988888
Q ss_pred HHHHHHHhHhccC-Cc--chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 366 CCCIFLVPLLFQQ-PK--GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 366 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+.++..+++.+.. .. +......++.+++.+...+....+..+.+|++.+++++|+.++...+|..+++.+.|.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655554432 12 22233445566777777888888999999999999999999999999999999999999887
Q ss_pred ccc
Q 011365 443 CHQ 445 (487)
Q Consensus 443 ~g~ 445 (487)
.|+
T Consensus 416 ~g~ 418 (471)
T PRK10504 416 FGQ 418 (471)
T ss_pred hhh
Confidence 764
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=220.78 Aligned_cols=320 Identities=17% Similarity=0.150 Sum_probs=221.2
Q ss_pred hhhHHHHHHHH--HhhhhHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH-
Q 011365 52 SSFSFSLFGRL--LLSFRKGFLI-TAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW- 126 (487)
Q Consensus 52 ~~~~~~~~G~~--r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~- 126 (487)
..+..++.|.+ |+||||.++. +..+.+++.++++++++++.+++.|++.|.+.+.. +...++..|+.|+++|++.
T Consensus 46 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~ 125 (375)
T TIGR00899 46 GIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVM 125 (375)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHH
Confidence 34456677776 9999887655 56666777788899999999999999998877777 7777888899888777754
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 127 -MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 127 -~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
.+....+.++|.+++|.+++.+.+.++||+.|++.+++.++..+ .++++||.|+....+.+ +.
T Consensus 126 ~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------- 190 (375)
T TIGR00899 126 FSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT----RL----------- 190 (375)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC----cc-----------
Confidence 68888889999999999999999889999999999888776644 44557876642100000 00
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
+.++.++++..+..
T Consensus 191 ------------------------------------------------------------------~~~~~~~~~~~~~~ 204 (375)
T TIGR00899 191 ------------------------------------------------------------------EVRGLLASRDTRLL 204 (375)
T ss_pred ------------------------------------------------------------------hhhhhhcCcchHHH
Confidence 11112222222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
...... ..........+.|.+..+. .+.+....+...........++.++.|++.||++||+.+..+.
T Consensus 205 ~~~~~~---~~~~~~~~~~~~~~~~~~~---------~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 272 (375)
T TIGR00899 205 FVACTL---MWGCNILYIINMPLLIIHE---------LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA 272 (375)
T ss_pred HHHHHH---HHHHHHHHHhhhHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence 221111 1111222223344443221 1244444555555555666778889999999999999888777
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
++..+..+.+...++.+.......+.+++.+...+....+..|..|++ +++++++.+...++|..++|.+.|.+.+..|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 273 LAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666555554444445555555556667777777788888889988765 6799999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHHheee
Q 011365 445 QTAALILFELVILLSGISVLL 465 (487)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (487)
+...+++.+++.+++.++..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 352 YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred chhHHHHHHHHHHHHHHHHhe
Confidence 888887777777666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=212.91 Aligned_cols=335 Identities=19% Similarity=0.190 Sum_probs=259.4
Q ss_pred hcccccccchhhhHHH----------HHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchh---HHHHHHHHHHHhhhccc
Q 011365 42 LNLHFSESDQSSFSFS----------LFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPN---YYLLLFFRCLVGLGLGG 106 (487)
Q Consensus 42 ~~~~~~~~~~~~~~~~----------~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~ 106 (487)
+++++++.|.+++.+. .+|.+ |+|.|++..++.++..+-.+..+++.+ ++++++++++.|++.+.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas 121 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS 121 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence 6777787777665422 23444 999999999999999999999988855 45999999999999888
Q ss_pred hHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhh---hHHHHHHhHHHHHHH-HHHHHhcCCCchhh
Q 011365 107 GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG---WRWLLGLSAFPSSLL-LLLYSVTPESPRYL 182 (487)
Q Consensus 107 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~---w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~ 182 (487)
..+..+.+++++||+++|.++|++. ..++|..+...++..+....+ ||....+..+..++. ++.++.+.|.|+..
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r 200 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR 200 (417)
T ss_pred ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 8888999999999999999999999 999999999999988888888 999998888877775 55666667666521
Q ss_pred hhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhh
Q 011365 183 CLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLA 262 (487)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (487)
...++...
T Consensus 201 ~~~~~~~~------------------------------------------------------------------------ 208 (417)
T COG2223 201 ASVKPQLP------------------------------------------------------------------------ 208 (417)
T ss_pred ccccccch------------------------------------------------------------------------
Confidence 11000000
Q ss_pred ccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchh
Q 011365 263 NSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFP 342 (487)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (487)
..++.++++ +..+.+.+.++.....+.++..++|.+.++. .+.+...++.......+.+.+
T Consensus 209 -------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~---------fg~~~~~Ag~~a~~f~~~g~l 269 (417)
T COG2223 209 -------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ---------FGLSPVTAGLIAFLFPLIGAL 269 (417)
T ss_pred -------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChhhHHHHHHHHHHHHHH
Confidence 145555555 4445566667777777778888888887552 346666667888888999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC-------CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 343 GLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-------PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 343 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
.++++|+++||+|.++.+...+..++++........ +........+...++.+..+...+.++..++|. +.|
T Consensus 270 ~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G 348 (417)
T COG2223 270 ARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETG 348 (417)
T ss_pred HHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhh
Confidence 999999999999999998888888888777776543 233444445566677777778888888888876 589
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHheeecccc
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.+.|+...++.+|++.-|...|...+.+| +...++++..+.+++.+..+....+
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 5566777777777777766655433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=218.17 Aligned_cols=306 Identities=15% Similarity=0.105 Sum_probs=211.1
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+++..+.++.+++.+++++++|++.++++|+++|++.+.. +...+.+.+..++++|+++++....
T Consensus 58 ~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (381)
T PRK03633 58 TLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMM 137 (381)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455665 999999999999999999999999999999999999999999988 7777788888999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (487)
+.++|..++|.+++.+.+...|...+.. +......+. ..+.+.+|+. +++++
T Consensus 138 ~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~----~~~~~---------------------- 189 (381)
T PRK03633 138 VYYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILP-LLFTRILNQQ----AENHD---------------------- 189 (381)
T ss_pred HHHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHH-HHHhcccCCC----CCCCC----------------------
Confidence 9999999999999988765333333222 221111111 1111111110 00000
Q ss_pred cchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHH
Q 011365 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF 292 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (487)
..+.++.++++..+.... ..+
T Consensus 190 --------------------------------------------------------~~~~~~~~~~~~~~~~~~---~~~ 210 (381)
T PRK03633 190 --------------------------------------------------------STSIWPMLKLRQARLGVN---GCI 210 (381)
T ss_pred --------------------------------------------------------CCCHHHHHHhcchHHHHH---HHH
Confidence 002222333332222211 111
Q ss_pred HHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011365 293 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 372 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 372 (487)
.....+.....+.|.+.++.+ .+....+...+...++.+++++..+++.||+++|+.+..+..+..++.+
T Consensus 211 ~~~~~~~~~~~~lp~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNHQG----------MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI 280 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 122222333345677665433 5555556777788888999999999999999999988877777666555
Q ss_pred hHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHH
Q 011365 373 PLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILF 452 (487)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 452 (487)
.+. . .........+.+++.....|...+.+.|..|+++++.+.+..+...++|..++|.+.|++.|+.|+...+.+.
T Consensus 281 ~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~ 357 (381)
T PRK03633 281 AML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMI 357 (381)
T ss_pred HHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 443 1 1222334455566566677888888899999888888888888888999999999999999999988777776
Q ss_pred HHHHHHHHH
Q 011365 453 ELVILLSGI 461 (487)
Q Consensus 453 ~~~~~~~~~ 461 (487)
+.+.++..+
T Consensus 358 ~~~~l~~~~ 366 (381)
T PRK03633 358 ASVSFIYLL 366 (381)
T ss_pred HHHHHHHHH
Confidence 666655543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=221.63 Aligned_cols=351 Identities=19% Similarity=0.290 Sum_probs=257.8
Q ss_pred cccccccchhh-hHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHhhhccch-
Q 011365 43 NLHFSESDQSS-FSFSLFGRL-----------LLSFRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG- 107 (487)
Q Consensus 43 ~~~~~~~~~~~-~~~~~~G~~-----------r~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~- 107 (487)
++.++..+.+. +++..+|++ |+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 45566565544 344555555 99999999999999999999999875 4567899999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-hhhHHHHHHhHHHHHHHHHHH-HhcCCCchhhhhc
Q 011365 108 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLY-SVTPESPRYLCLK 185 (487)
Q Consensus 108 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~~~~~~ 185 (487)
|+.....+.|.|+++|++..++...+..+|.+++-++++++.+. .||+.+|++.++.+++..+++ ++..|+|.. +
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h 223 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---H 223 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---C
Confidence 88889999999999999999999999999999999999999988 999999999999999986655 445667652 1
Q ss_pred CChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccc
Q 011365 186 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN 265 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
+.. .++.++++.+...+... +
T Consensus 224 ~~i--s~~El~~I~~~k~~~~~---------------------------------------------------------~ 244 (466)
T KOG2532|consen 224 PNI--SEKELKYIEKGKSEAHV---------------------------------------------------------K 244 (466)
T ss_pred CCC--CHHHHHHHHhccccccc---------------------------------------------------------C
Confidence 111 11112222211110000 0
Q ss_pred cchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHH
Q 011365 266 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL 345 (487)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (487)
+....++++++++ +.++.+++..++....++.+..+.|.|+++.- +++....+...++..+...+..+
T Consensus 245 ~~~~vP~~~i~ts---~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL---------~f~v~~~G~~salP~l~~~~~k~ 312 (466)
T KOG2532|consen 245 KKPPVPYKAILTS---PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL---------GFDVRETGFLSALPFLAMAIVKF 312 (466)
T ss_pred CCCCCCHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh---------CCChhhhhHHHHHHHHHHHHHHH
Confidence 0012289999988 66777888888999999999999999997543 37777889999999999999999
Q ss_pred HHHHHHhhhhh---------hHHHHHHHHHHHHHHHhHhccCCcch-HHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 346 LAAAMVDRLGR---------KLSMSSMFFCCCIFLVPLLFQQPKGL-TTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 346 ~~g~l~dr~g~---------r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
++|.++||+.+ |..-.++....+++++.+.+.+.... ..+.++....+..+..............+++.+
T Consensus 313 ~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~ 392 (466)
T KOG2532|consen 313 VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAG 392 (466)
T ss_pred HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHH
Confidence 99999999854 23334566666777777776553222 233333333333333333333333332457799
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHh---hccchhHHHHHHHHHHHHHHheeecc
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVH---GCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
..+|+.+.+..+.++++|.+.|.+.. ...|...|++.+++.++..++..++-
T Consensus 393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 99999999999999999999999883 23577888888888888776666654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=215.67 Aligned_cols=299 Identities=28% Similarity=0.396 Sum_probs=249.0
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
.+..++.|.+ |+|||+.+..+.++..++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++.+++
T Consensus 48 ~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (352)
T cd06174 48 ALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL 127 (352)
T ss_pred HHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhH
Confidence 3445666776 999999999999999999999999999999999999999999998 8888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
.....++|..++|.+++.+.+..+||..+++.+++.++..+...+++
T Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 174 (352)
T cd06174 128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 99999999999999999999988999999998888777755544332
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
+..+....
T Consensus 175 ------------------------------------------------------------------------~~~~~~~~ 182 (352)
T cd06174 175 ------------------------------------------------------------------------RLLLLLAL 182 (352)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 11122233
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH-HHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL-SMSSMFFCCC 368 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~ 368 (487)
..+...........+.|.+.++.. +.+..+.+.......++..++.++.+++.||++||+ .+..+..+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVL---------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444555556666654321 255556678888889999999999999999999999 8888888888
Q ss_pred HHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 369 IFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
++.+.+...++.+......++.+++.+...+...++..|..|+++|++.+|+.+...+++..++|.+.|.+.+..++...
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~ 333 (352)
T cd06174 254 LGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV 333 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchH
Confidence 88888777776667777888889999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHheee
Q 011365 449 LILFELVILLSGISVLL 465 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~ 465 (487)
+.+.+++.+++.+....
T Consensus 334 ~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 334 FLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 88888887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=221.45 Aligned_cols=323 Identities=15% Similarity=0.101 Sum_probs=221.9
Q ss_pred HHHHHHHH--Hh-----hhhHH-HHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC
Q 011365 55 SFSLFGRL--LL-----SFRKG-FLITAIVTSAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN 122 (487)
Q Consensus 55 ~~~~~G~~--r~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~ 122 (487)
..+++|.+ |+ ||||. +..+.+..+++...+++. ++++.+.+.+++.|++.+.. +...+++.|++|+++
T Consensus 61 ~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~ 140 (491)
T PRK11010 61 FKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE 140 (491)
T ss_pred HHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 34556666 77 99986 557777777777777665 47888999999999998888 777899999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHhhc-hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhH
Q 011365 123 RGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKI 201 (487)
Q Consensus 123 r~~~~~~~~~~~~lG~~i~~~~~~~l~~-~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~ 201 (487)
|+++.++...+..+|.++++.++.++.+ ..|||..|++.++..++..+..+++||+++.. +++++.++ .
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~~---~---- 210 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLEQ---A---- 210 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchhh---h----
Confidence 9999999999999999999999999988 57999999999888777766666677754310 00000000 0
Q ss_pred hCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHH
Q 011365 202 NGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELI 281 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (487)
...+++++++++..
T Consensus 211 ------------------------------------------------------------------~~~~l~~~~~~~~~ 224 (491)
T PRK11010 211 ------------------------------------------------------------------VVAPLRDFFGRNNA 224 (491)
T ss_pred ------------------------------------------------------------------HHHHHHHHHcCcCH
Confidence 00145555544333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhh-ccccccccccccCCccccccchhh-hhhhhcchhHHHHHHHHHhhhhhhHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELN-NGQNKCVSNELQSGKSRDINYGDV-FITSFAEFPGLLLAAAMVDRLGRKLS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~r~~ 359 (487)
+....... ......+....+.+.+. ++.| .+..+.+... ....++.++|.++.|++.||+|+|+.
T Consensus 225 ~~~ll~~~---l~~~~~~~~~~~~~~~l~~~~G----------~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 225 WLILLLIV---LYKLGDAFAMSLTTTFLIRGVG----------FDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 32222222 22222222223334333 2233 6666666655 45567889999999999999999887
Q ss_pred HHHHHHHHHHHHHhH---hcc-CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 360 MSSMFFCCCIFLVPL---LFQ-QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
+.++.++.++..+.+ ... ++.+......++..++.+...+...++..+..+++.+++.+|+.+....+|..+++.+
T Consensus 292 l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 292 LMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 776555544433222 222 2222223334444444555556678888889999999999999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 436 AVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 436 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
.|++.|..|+...+.+.+++.+++.+.....
T Consensus 372 ~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 372 AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877777777777766555544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=214.97 Aligned_cols=296 Identities=15% Similarity=0.189 Sum_probs=211.0
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.
T Consensus 57 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (385)
T TIGR00710 57 QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMP 136 (385)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445555 999999999999999999999999999999999999999999988 8888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
...+|..+++.+++.+.+..+||..|++.++..++..+ ..++.||+++... +++.++
T Consensus 137 ~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------------- 194 (385)
T TIGR00710 137 VLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQIST--------------------- 194 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCCHHH---------------------
Confidence 99999999999999998889999999988877776644 3445566543100 000000
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
.+..++++++++..+... +..
T Consensus 195 --------------------------------------------------------~~~~~~~~~~~~~~~~~~---~~~ 215 (385)
T TIGR00710 195 --------------------------------------------------------YFETFLLLLKSKMFWGYA---LIY 215 (385)
T ss_pred --------------------------------------------------------HHHHHHHHHcCchhHHHH---HHH
Confidence 001344455543333222 222
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
......++....+.|.+.++. .+.+....+.......++.+++.++.+++.||+++|+.+..+..+..++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 216 GASFGGFFAFFSGAPFVYIDI---------MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSA 286 (385)
T ss_pred HHHHHHHHHHHHcChHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 222333344444556554321 12555556777778888899999999999999999998887776666655
Q ss_pred HhHhcc-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 372 VPLLFQ-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 372 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+.+... ...........+.+++.+...+.......|..| +.++++.++.+.....++.+.+.+.+.+.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 287 VLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444332 112233344556677777788888888888887 5689999999998887666666666644443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=225.54 Aligned_cols=346 Identities=16% Similarity=0.162 Sum_probs=230.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
++.++.|.+ |+|||++++++.++.+++.+++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++++++.
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 131 (485)
T TIGR00711 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIW 131 (485)
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 334556666 999999999999999999999999999999999999999999988 88889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHH-----HH-HhHhC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLE-----KI-AKING 203 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~-----~~-~~~~~ 203 (487)
..+..+|..++|.+++++.++++||+.|++.++++++..+ ..+++||+++. .+++.+....... .. .....
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998887776643 44556664431 1111111111000 00 00000
Q ss_pred CCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHH
Q 011365 204 TKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKS 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (487)
.+. .+ ...+......... ... ....-..++. ..+.+..+. ++++++..
T Consensus 210 ~~~-~~-~~~~~~~~~~~~~----------~~~----~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~-- 257 (485)
T TIGR00711 210 GPE-RG-WFDSNEILILSIT----------GLV----AIIAFVVWEL-------------TDDNPLVDL-RLFKYRNF-- 257 (485)
T ss_pred CCC-CC-CCCchHHHHHHHH----------HHH----HHHHHHHHHH-------------cCCCCccCH-HHHcCCCh--
Confidence 000 00 0000000000000 000 0000000000 000000011 23343222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHH
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 363 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 363 (487)
....+..+...+.++....+.|.+.++. .+.+..+.+.......++.+++.++.|++.||++||+.+..+
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g 327 (485)
T TIGR00711 258 -TIGCVYMSLLGLGLYGSFYLLPLYLQQV---------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG 327 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 2223334444455555666677776432 125666667788888899999999999999999999998888
Q ss_pred HHHHHHHHHhHhc--cC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 364 FFCCCIFLVPLLF--QQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 364 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
..+.+++...+.+ .. +.+......++.+++.+...+.......+.+|+++++++.|+.+....+|+.+++.+.|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 328 LILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777766652 11 2233445566778888777777777778889999999999999999999999999999999
Q ss_pred Hhhc
Q 011365 440 VHGC 443 (487)
Q Consensus 440 ~~~~ 443 (487)
.++.
T Consensus 408 ~~~~ 411 (485)
T TIGR00711 408 LTNR 411 (485)
T ss_pred HHHH
Confidence 8753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=217.56 Aligned_cols=319 Identities=14% Similarity=0.115 Sum_probs=221.4
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||+++.++.++.+++.++..++++++.+++.|.+.|.+.+.. +...++..|..|+++|++++++.
T Consensus 58 ~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (395)
T PRK10054 58 VFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN 137 (395)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 445566777 999999999999999999999999999999999999998877776 77778999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
....++|.+++|.+++++.. .+|+..|++.++..++.++ ..+++||+++. ++.++ ++.
T Consensus 138 ~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~~-~~~--------------- 196 (395)
T PRK10054 138 YTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATET-GSV--------------- 196 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccch-hhh---------------
Confidence 99999999999999998875 7999999988887777643 34445544321 00000 000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
.+.++.++++..+... .
T Consensus 197 ------------------------------------------------------------~~~~~~~~~~~~~~~~---~ 213 (395)
T PRK10054 197 ------------------------------------------------------------WSPSVLLQDKALLWFT---C 213 (395)
T ss_pred ------------------------------------------------------------hhhhhhccCceehHHH---H
Confidence 0112333333222222 2
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCI 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 369 (487)
..+.....+.....+.+.+..... +.+.+....+.......+.........+++.||.++|+.+..+..+..+
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 214 SGFLASFVSGAFASCISQYVMVVA-------DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVI 286 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhc-------ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHH
Confidence 222222222222122222221100 1113333335566666666777778889999999999998888877777
Q ss_pred HHHhHhcc-CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 370 FLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 370 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
..+.+.+. ++.+...+...+.+++.....|...+.+.+..|++.++++++..+ ..++|..++|.++|.+.|+.|....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~ 365 (395)
T PRK10054 287 GLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSL 365 (395)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhH
Confidence 76666543 344445556677777777777888889999999999999998765 6779999999999999999987777
Q ss_pred HHHHHHHHHHHHHhee
Q 011365 449 LILFELVILLSGISVL 464 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~ 464 (487)
+++.+.+..++.++..
T Consensus 366 ~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 366 FVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666555555444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=222.29 Aligned_cols=323 Identities=17% Similarity=0.225 Sum_probs=215.9
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||+++.++.++.+++.++++++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.
T Consensus 45 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 124 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFW 124 (379)
T ss_pred hhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeeh
Confidence 344555666 999999999999999999999999999999999999999999988 88889999999999999999999
Q ss_pred HHHHHHhHHHHH-HHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCC
Q 011365 131 QTFWTVGTILEA-GIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS 208 (487)
Q Consensus 131 ~~~~~lG~~i~~-~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (487)
..+..+|..+++ .++..+.+..+||..|++.+++.++. ++...+.||+|+....+++ ++. ++
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~ 188 (379)
T TIGR00881 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA-EEM---------------PN 188 (379)
T ss_pred hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc-ccC---------------cc
Confidence 999999999999 56677777789999999888777665 4445556666541100000 000 00
Q ss_pred CCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHH
Q 011365 209 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW 288 (487)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (487)
+ + .+.+. ++ .++.........+.+++++.. +...
T Consensus 189 ~--------~-----------~~~~~------------~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~ 222 (379)
T TIGR00881 189 E--------E-----------PDGDA------------EK------------KEEELTKKQIFLQYVLLNKVL---WYIS 222 (379)
T ss_pred c--------c-----------ccccc------------cc------------ccccccchHHHHHHHHhcchH---HHHH
Confidence 0 0 00000 00 000000001134455555333 3333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhh-hHH-HHHHH-H
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR-KLS-MSSMF-F 365 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~-~~~~~-~ 365 (487)
+..+...........+.|.+..+. .+.+....+.......++.++++++.+++.||..+ |+. +.... .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 293 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQE---------KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA 293 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 333444444455556667666432 12555566777888889999999999999998643 332 22211 2
Q ss_pred HHHHHHHhHhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 366 CCCIFLVPLLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 366 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
...++...+.. ..+........++.++...+..+....+..|.+|++.|+++.|+.+....+|+.++|.+.|.+.|..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 294 LIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 22222222222 1222233344445555555555666788899999999999999999999999999999999999988
Q ss_pred cchh
Q 011365 444 HQTA 447 (487)
Q Consensus 444 g~~~ 447 (487)
|+..
T Consensus 374 g~~~ 377 (379)
T TIGR00881 374 GWAG 377 (379)
T ss_pred cccc
Confidence 8654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=214.31 Aligned_cols=323 Identities=12% Similarity=0.001 Sum_probs=222.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||++++++.++.+++.+++.++++. ++.|+++|++.+.. |...+++.|++|+++|++++++.
T Consensus 53 l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~ 129 (393)
T PRK11195 53 VLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM 129 (393)
T ss_pred HHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 445666777 9999999999999999998888777664 77899999999999 88899999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGN 210 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (487)
+....+|.++||.+++++.+. .|+..+.+.+...++..+....+||+|+....++ ++..+..++.
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~------------ 194 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQS--WNPIALLRDF------------ 194 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC--CCHHHHHHHH------------
Confidence 999999999999999999874 4888887776666555555667787653211000 0000000000
Q ss_pred CCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHH-HH
Q 011365 211 LVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL-WL 289 (487)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 289 (487)
+..++.+++++..+..... .+
T Consensus 195 ----------------------------------------------------------~~~~~~l~~~~~~~~~~~~~~~ 216 (393)
T PRK11195 195 ----------------------------------------------------------FHACRVLWRDKLGRFSLAGTTL 216 (393)
T ss_pred ----------------------------------------------------------HHHHHHHHhCchhHHHHHHHHH
Confidence 0033445555444433222 12
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCI 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 369 (487)
.+.......+....|.+... +.+....+.......++.++++++.+++.||.++++.+..+..+ ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~l-------------g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~ 282 (393)
T PRK11195 217 FWGAGATLRFLVLAWAPVAL-------------GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GL 282 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHc-------------CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HH
Confidence 22222222233333444332 25556667888888999999999999999999888777766433 33
Q ss_pred HHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc-hhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 370 FLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV-RTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
..+.+.+.++.+......++.|++.+...+...+...+..|++. +|++.++.+...+++..++..+.+.+ +..|....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 361 (393)
T PRK11195 283 VVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVV 361 (393)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHH
Confidence 33334444444445555667777777777777888888766654 79999999999999999999999854 66776666
Q ss_pred HHHHHHHHHHHHHheeecc
Q 011365 449 LILFELVILLSGISVLLFP 467 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (487)
+.+.+...++...+.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 362 AVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6665555555555444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=213.37 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=201.6
Q ss_pred HhhhhHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCc--hhHHHHHHHHHHHhH
Q 011365 63 LLSFRKGF-LITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGT 138 (487)
Q Consensus 63 r~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~ 138 (487)
|+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+.. +....++.|+.++++| +...++.+.+.++|.
T Consensus 77 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 156 (393)
T PRK15011 77 KRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAW 156 (393)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 99999875 4566666778888889999998876655544433444 7777888888776655 345688899999999
Q ss_pred HHHHHHHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhh
Q 011365 139 ILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 217 (487)
Q Consensus 139 ~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+++|++++.+.+++|||..|++.++..++.. +.+.++||.++. ++++..+ .+
T Consensus 157 ~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~--------------------- 209 (393)
T PRK15011 157 VIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE-----LPLATGT-LE--------------------- 209 (393)
T ss_pred HHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC-----Ccccccc-cc---------------------
Confidence 9999999999988999999999888777664 445557776431 0000000 00
Q ss_pred hhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 011365 218 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS 297 (487)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
..+. +++.... .....+.....
T Consensus 210 -----------------------------------------------------~~~~--~~~~~~~---~~~~~~~~~~~ 231 (393)
T PRK15011 210 -----------------------------------------------------APRR--NRRDTLL---LFVICTLMWGT 231 (393)
T ss_pred -----------------------------------------------------cccc--ccccHHH---HHHHHHHHHHH
Confidence 0000 0000011 11111212222
Q ss_pred HHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 011365 298 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ 377 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 377 (487)
++....+.|.+.++. .+.+....+.......+..+++.++.|+++||++||+.+..+.....+....+...
T Consensus 232 ~~~~~~~~p~~l~~~---------~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK15011 232 NSLYIINMPLFIINE---------LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA 302 (393)
T ss_pred HHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566655321 12455555556666667778889999999999999988776665555444444334
Q ss_pred CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHH
Q 011365 378 QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVIL 457 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~ 457 (487)
++.+......++.+++.+...+....+..|..|++ ++++.++.+...++|..++|.+.|.+.|..|+...+++..++.+
T Consensus 303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~ 381 (393)
T PRK15011 303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMII 381 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444444444455555555566667778888864 99999999999999999999999999998888777776666666
Q ss_pred HHHHheee
Q 011365 458 LSGISVLL 465 (487)
Q Consensus 458 ~~~~~~~~ 465 (487)
++.+..+.
T Consensus 382 ~~~~~~~~ 389 (393)
T PRK15011 382 ATLFCLLR 389 (393)
T ss_pred HHHHHHHh
Confidence 65554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-25 Score=212.78 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=210.1
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+.+..+..+.+++.+++.++++++.+++.|+++|++.+.. +...+++.|+++++++++..+....
T Consensus 58 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (401)
T PRK11043 58 QLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMP 137 (401)
T ss_pred HHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444555 999999999999999999999999999999999999999998877 6667889999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 212 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (487)
...+|..++|.+++++.+.++||..|++.+++.++..+..++++|+++. ++.++.+
T Consensus 138 ~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------------- 193 (401)
T PRK11043 138 LVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RKQSQDA-------------------- 193 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccchHH--------------------
Confidence 9999999999999999998999999999888887776555556554321 0000000
Q ss_pred cchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHH
Q 011365 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF 292 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (487)
.+++++++++..+.... ...
T Consensus 194 ---------------------------------------------------------~~~~~~~~~~~~~~~~~---~~~ 213 (401)
T PRK11043 194 ---------------------------------------------------------LTFKQLLKSKTYLGNVL---IFA 213 (401)
T ss_pred ---------------------------------------------------------HHHHHHHcChhHHHHHH---HHH
Confidence 04445555443332222 122
Q ss_pred HHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011365 293 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 372 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 372 (487)
.....++....+.|.+.++.+ .+....+.......++.++|.++.+++.||+++|+......+..+++.+
T Consensus 214 ~~~~~~~~~~~~~p~~~~~~g----------~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILEQMG----------YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 222333444455676664433 5555556666666778888999999999999988866554444433322
Q ss_pred h---Hhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 373 P---LLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 373 ~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
. ... .++.+.......+.+++.+..++...+...+..| ++++++.|+.+.....++..++.+.|.+.+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 284 AIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 2 112 2233333444556677777888888887777776 469999999999999999999999998887543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=218.87 Aligned_cols=298 Identities=23% Similarity=0.349 Sum_probs=213.9
Q ss_pred hhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHH
Q 011365 52 SSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 52 ~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~ 128 (487)
..+..++.|.+ |+|||+++.++.++.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|+++++
T Consensus 45 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 124 (352)
T PF07690_consen 45 SALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFG 124 (352)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccc
Confidence 34556667777 999999999999999999766667788889999999999999888 888899999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCC
Q 011365 129 IFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP 207 (487)
Q Consensus 129 ~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (487)
+...+.++|.+++|.+++.+.+..+||+.|++.+++.++..++ ..+++++|+....+++.++.+
T Consensus 125 ~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--------------- 189 (352)
T PF07690_consen 125 ILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESES--------------- 189 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----------------
T ss_pred cccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccccc---------------
Confidence 9999999999999999999998899999999999988888553 344554443111111000000
Q ss_pred CCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhH-HHHhhChHHHHHHHH
Q 011365 208 SGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITA-LLILLSPELIKSTLL 286 (487)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 286 (487)
+. + ..+.+ ++.+++++..+ .
T Consensus 190 -------------------------------------~~----------------~---~~~~~~~~~~~~~~~~~---~ 210 (352)
T PF07690_consen 190 -------------------------------------KK----------------P---KPLKPGFKSLFKNPVLW---I 210 (352)
T ss_dssp --------------------------------------H----------------H---HCCCH-CTHHHHHHCCH---H
T ss_pred -------------------------------------cc----------------c---cccccccccccccchhh---h
Confidence 00 0 00001 33333333222 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCcc-ccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKS-RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
.....+...+.++....+.|.+.. ..+ .+ ....+....+..+...++.++.+++.||+++|+......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLG----------FSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAI 280 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHH----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 233333334445556667777632 222 44 344466677888888889999999999999877766655
Q ss_pred HHHHHHHHhHhc---cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH
Q 011365 365 FCCCIFLVPLLF---QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP 433 (487)
Q Consensus 365 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (487)
....+..+.+.. ..+........++.+++.+...+...++..|.+|++++|++.|+.+...+++..++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 281 LLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 555555444443 223345555677788888889999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=212.79 Aligned_cols=302 Identities=17% Similarity=0.080 Sum_probs=198.4
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+.+..+.++.+++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|++++++.+.
T Consensus 55 ~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 134 (392)
T PRK10473 55 MLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNG 134 (392)
T ss_pred HHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4556666 999999999999999999999999999999999999999999987 7788999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
...+|..++|.+++.+.+..+||..|++.++..++.. +...++||+++.. +++.+..
T Consensus 135 ~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~-------------------- 192 (392)
T PRK10473 135 ITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR--APAASSK-------------------- 192 (392)
T ss_pred HHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCCccch--------------------
Confidence 9999999999999998888899999999888777664 4455566654210 0000000
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
.+..++.++++..+.........
T Consensus 193 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (392)
T PRK10473 193 ---------------------------------------------------------PRENSESLLNRFFLSRLVITTLS 215 (392)
T ss_pred ---------------------------------------------------------HHHHHHHHhCHHHHHHHHHHHHH
Confidence 00122233333222222211111
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
.. .......+.|.+..+. .+.+....+.......++.+++.++.+++.||+|+|+.+..+..+..++.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 283 (392)
T PRK10473 216 VT---VILTFVNTSPVLLMEQ---------MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAG 283 (392)
T ss_pred HH---HHHHHHHhCHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 1112223334443221 12455555667777888899999999999999999999888887777766
Q ss_pred HhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHH
Q 011365 372 VPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALIL 451 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 451 (487)
+.+....+.........+.+.+.+...+.. ...+..|.++|+ |..+....++..+++.+.+++.+..|+......
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~ 358 (392)
T PRK10473 284 ITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNML 358 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 666554433333333333333333333332 233444544443 444445567777778888888887776543333
Q ss_pred HH
Q 011365 452 FE 453 (487)
Q Consensus 452 ~~ 453 (487)
.+
T Consensus 359 ~~ 360 (392)
T PRK10473 359 IG 360 (392)
T ss_pred HH
Confidence 33
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-25 Score=209.14 Aligned_cols=313 Identities=13% Similarity=0.104 Sum_probs=216.7
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc-----hhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHH
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
...|.+ |+|.|+++.++.+++++..++.+++ +|++.+++.|++.|++.+..+.....+++++|+++||+++|+
T Consensus 88 ip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi 167 (462)
T PRK15034 88 VPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGI 167 (462)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHH
Confidence 344666 9999999999999999999999987 899999999999999844338888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhh-----c-------------hhhhHHHHHHhHHHHHHHHHHHHh-cCCCchhhhhcCChHH
Q 011365 130 FQTFWTVGTILEAGIAWLVM-----P-------------RLGWRWLLGLSAFPSSLLLLLYSV-TPESPRYLCLKGRTAE 190 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~-----~-------------~~~w~~~f~~~~~~~~i~~~~~~~-l~e~p~~~~~~~~~~~ 190 (487)
.....++|..+++++...+. . ..+||.+.++.+++.++..+..++ +++.|. .+.+.
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~-- 242 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI-- 242 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH--
Confidence 97777777766655544322 1 345888888877777766444433 333221 00000
Q ss_pred HHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhh
Q 011365 191 ARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGIT 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (487)
+
T Consensus 243 -------------------------------------------------------------------------------~ 243 (462)
T PRK15034 243 -------------------------------------------------------------------------------A 243 (462)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHH
Q 011365 271 ALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAM 350 (487)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 350 (487)
+..+.+|++ ..+.+.+.+++....+.++..+.|.+.++. ++.........+..+...+.++++|++
T Consensus 244 ~~~~vlk~~---~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----------~~~~~~l~~~~l~~l~~~l~rplgG~L 309 (462)
T PRK15034 244 DQLPVLQRL---HLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----------FPDVNILRLAFFGPFIGAIARSVGGAI 309 (462)
T ss_pred HHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cChHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333455553 344555555666666666777788876331 322222223445567788889999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhHh-ccC-----CcchHHHHHHHHHHHHHhhhHHHhhhcccccCC-------------
Q 011365 351 VDRLGRKLSMSSMFFCCCIFLVPLL-FQQ-----PKGLTTGLLFGARICITVTFTVVYVYAPEIYPT------------- 411 (487)
Q Consensus 351 ~dr~g~r~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------- 411 (487)
+||+|+++++.++.+.+.++..... ..+ +.+......+...++.+..+...+-++.+.+|+
T Consensus 310 ADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 310 SDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 9999999999888877666553322 221 123333333344455566666777777777764
Q ss_pred --------cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHheeecc
Q 011365 412 --------SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTA-ALILFELVILLSGISVLLFP 467 (487)
Q Consensus 412 --------~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 467 (487)
++.|.+.|+....+.+|+++.|.+.|...+.+|.+. .++.+.+..+++.++.+...
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 157889999999999999999999999999887554 46667777777777766654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=208.34 Aligned_cols=312 Identities=12% Similarity=-0.007 Sum_probs=205.9
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||++++.+.++++++.+++.+++|++.++++|+++|++.+.. +....++.|++|+++|++++++...
T Consensus 68 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (413)
T PRK15403 68 QWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITS 147 (413)
T ss_pred HHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4445655 999999999999999999999999999999999999999998876 5566788899999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
...+|..++|.+++.+.+..|||+.|++.++..++..+. ++++||+++. ++++.+.+.
T Consensus 148 ~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~------------------ 206 (413)
T PRK15403 148 IVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSAKS------------------ 206 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCChHH------------------
Confidence 999999999999999988889999999998887777543 4567876431 000000000
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
.+++++.+++++..+. ..+..
T Consensus 207 --------------------------------------------------------~~~~~~~ll~~~~~~~---~~l~~ 227 (413)
T PRK15403 207 --------------------------------------------------------VLRDFRNVFRNRLFLT---GAATL 227 (413)
T ss_pred --------------------------------------------------------HHHHHHHHHcCHHHHH---HHHHH
Confidence 0115566666644433 33333
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
+.....++....+.|.+.++.. +.+....+........+..++..+.+.+.++..+++.......+..++.
T Consensus 228 ~~~~~~~~~~~~~~P~~l~~~~---------g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 228 SLSYIPMMSWVAVSPVILIDAG---------GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHHHHhChHHHHHhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3344444555556677764431 2555555555555666667777777776644433333222122212211
Q ss_pred HhHh----ccCCcc-hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 372 VPLL----FQQPKG-LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 372 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
+++. ...+.+ ......++.+++.+...|.......+.. +..+|++.++.+.....+..+++...|++.+. +..
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~ 376 (413)
T PRK15403 299 ALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGR 376 (413)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 1111 122222 2344556667777777777664332221 22479999999999999999999999988776 445
Q ss_pred hHHHHHHHHHHH
Q 011365 447 AALILFELVILL 458 (487)
Q Consensus 447 ~~~~~~~~~~~~ 458 (487)
.++....++..+
T Consensus 377 ~~~~~~~~~~~~ 388 (413)
T PRK15403 377 LPFHLLAVVAGV 388 (413)
T ss_pred hHHHHHHHHHHH
Confidence 555555544443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=210.85 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=218.5
Q ss_pred hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhhhccc
Q 011365 42 LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIVTSAAGLLS---AFAPNYYLLLFFRCLVGLGLGG 106 (487)
Q Consensus 42 ~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~ 106 (487)
.+++.+..+.+.. ++++.|.+ |+|||+++..+.++++++.+++ .++++++.++++|+++|+|.|.
T Consensus 54 ~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~ 133 (438)
T PRK10133 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC 133 (438)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3566665555443 34445555 9999999999999999999875 5689999999999999999999
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc------------------h--------hhhHHHHH
Q 011365 107 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------------------R--------LGWRWLLG 159 (487)
Q Consensus 107 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~------------------~--------~~w~~~f~ 159 (487)
. +...+++.|+.++++|.+.+++.+..+++|..+++.++..+.. . .+||.+|+
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~ 213 (438)
T PRK10133 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYM 213 (438)
T ss_pred HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHH
Confidence 8 7888888998777777778999999999999999998775430 0 25666675
Q ss_pred HhH-HHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcc
Q 011365 160 LSA-FPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237 (487)
Q Consensus 160 ~~~-~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
... +..++.++. ...+||.+. +++.++..
T Consensus 214 ~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~~--------------------------------------------- 244 (438)
T PRK10133 214 IIVAIVLLVALLIMLTKFPALQS----DNHSDAKQ--------------------------------------------- 244 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCc----cccccccc---------------------------------------------
Confidence 433 333333222 222343211 00000000
Q ss_pred cccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-ccccccc
Q 011365 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN-NGQNKCV 316 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (487)
.+...+.+++++++..+...+. .++.....+....|.+.+. ++
T Consensus 245 ----------------------------~~~~~~~~~ll~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~----- 288 (438)
T PRK10133 245 ----------------------------GSFSASLSRLARIRHWRWAVLA---QFCYVGAQTACWSYLIRYAVEE----- 288 (438)
T ss_pred ----------------------------cchhhhHHHHHhCchHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh-----
Confidence 0000134455555443332222 2223333333344555443 22
Q ss_pred cccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHh
Q 011365 317 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
..+.+....+.......++.++|+++.+++.||+++|+++..+..+.++.++...+.++. .......+.+++.+.
T Consensus 289 ----~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~ 363 (438)
T PRK10133 289 ----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSI 363 (438)
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHH
Confidence 113677777888889999999999999999999999999888877766655555444433 334566778999999
Q ss_pred hhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHH
Q 011365 397 TFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILL 458 (487)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~ 458 (487)
.+|..++...+..|++ .+++.++.. ...+|+.++|.+.|.+.|..| ....+++..++.+.
T Consensus 364 i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999998764 678888776 455788999999999999887 45555544443333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=209.22 Aligned_cols=310 Identities=12% Similarity=-0.029 Sum_probs=221.8
Q ss_pred HHHHHHH--HhhhhHHH----HHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHH
Q 011365 56 FSLFGRL--LLSFRKGF----LITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~ 128 (487)
++++|.+ |+|||+.. .++..+..+ .++.++++++.+++.|+++|.+.+.. +...++..++ +++|+++.|
T Consensus 56 ~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g 131 (382)
T TIGR00902 56 GLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYG 131 (382)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCcc
Confidence 4456655 88874433 222222222 24446789999999999999888877 7777776664 467899999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCC
Q 011365 129 IFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS 208 (487)
Q Consensus 129 ~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (487)
....+.++|.+++|++++.+.+.+|||..|++.++..++.++ ...++|+++. +++.++.+
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~---------------- 191 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPP---KDAIPEDE---------------- 191 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---Cccccccc----------------
Confidence 999999999999999999999999999999887655333333 3333433210 00000000
Q ss_pred CCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHH
Q 011365 209 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW 288 (487)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (487)
+ ....+.++++|++..+....
T Consensus 192 ------------------------------------------------------~---~~~~~~~~~l~~~~~~~~l~-- 212 (382)
T TIGR00902 192 ------------------------------------------------------S---QGDSAFIALLKNPMNLRFLA-- 212 (382)
T ss_pred ------------------------------------------------------c---ccchhHHHHHcChHHHHHHH--
Confidence 0 00014556666654443333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
..+...........+.|.+.++.| .+....+....+..++.+++.++.+++.||+|+|+.+..+.++..
T Consensus 213 -~~~l~~~~~~~~~~~~~~~l~~~g----------~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 213 -AVCLIQGAHAAYYGFSAIYWQAAG----------ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV 281 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCC----------CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence 333333344444456666665544 666666777778888999999999999999999999999999999
Q ss_pred HHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHH-HHhHhHhHHHHHHHHHHhhccchh
Q 011365 369 IFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASS-IGRIGGMVCPLVAVALVHGCHQTA 447 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~i~g~l~~~~g~~~ 447 (487)
+....+.+.++.+......++.++..+...+....++.+. |+++++++.++++. ...+|..++|.+.|++.|+.|. .
T Consensus 282 ~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~ 359 (382)
T TIGR00902 282 GRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-G 359 (382)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-H
Confidence 9888888877777778888999999999999999999988 99899999999875 5679999999999999999974 5
Q ss_pred HHHHHHHHHHHHHH
Q 011365 448 ALILFELVILLSGI 461 (487)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (487)
.++..+++.+++.+
T Consensus 360 ~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 360 TFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=220.89 Aligned_cols=411 Identities=17% Similarity=0.101 Sum_probs=282.4
Q ss_pred cccCchHHHHHHHHHHHhcccccccccCcc-ccchhcccccccchhhhHHHH----------HHHH--HhhhhHHHHHHH
Q 011365 8 DTVSPCSVLLICFAMIFCDIAFDVPELSWN-TTTLLNLHFSESDQSSFSFSL----------FGRL--LLSFRKGFLITA 74 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~G~~--r~Grr~~l~~~~ 74 (487)
|.-..|.+++.+++......|.... .|.. ....++++.+..+.+++.+.. .+.+ |+|.|++.+.|.
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~-~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~ 118 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINS-FGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG 118 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchhe-ehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence 5567788888888888876455433 3322 233356776767666655433 3333 999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHH-HHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh
Q 011365 75 IVTSAAGLLSAFAPNYYLLLFF-RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 152 (487)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~ 152 (487)
++.++|.++.+|++++|++++. -++.|+|.|+. .+....+..| .+++|+.+.|+...+.++|.++-|.+..++.+.+
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~ 197 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence 9999999999999999988876 69999999998 5555566655 4679999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhcCC-CchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCC
Q 011365 153 GWRWLLGLSAFPSSLLLLLYSVTPE-SPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNE 231 (487)
Q Consensus 153 ~w~~~f~~~~~~~~i~~~~~~~l~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (487)
|||..+++.+.+.+-.++....+++ .++. +++ ++++ .+. . ..+.... ..+.+. ....+
T Consensus 198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~-~~~~--~~~----~----~~~~~~~--~~~~~~-----~~~~~ 256 (509)
T KOG2504|consen 198 GWRGALLIFGGISLNVLVAGALLRPLSPPK---KPN-EEKD--LRN----S----AASVEST--PKPVEL-----RISER 256 (509)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cch-hhhh--hcc----c----ccccccc--cccccc-----ccccC
Confidence 9999999988888766555544433 3321 011 1100 000 0 0000000 000000 00000
Q ss_pred CCCCcccccccchhhhhhhhcccccchhhhhccc-cchhhHH----HHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011365 232 DDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN-MGGITAL----LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306 (487)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (487)
+..+.+.....+. +..+..++.. ....... .+++++ +.++...+......+.++....++|
T Consensus 257 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~ 322 (509)
T KOG2504|consen 257 DSGLKKLSLSNLA-----------TLKRGPDKWRNSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLP 322 (509)
T ss_pred CCCCCcccccchh-----------hhhhCCccccccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000000000 0000011 355555 5555566666667777778888889
Q ss_pred hhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhHhccCCcchHH
Q 011365 307 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLVPLLFQQPKGLTT 384 (487)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (487)
.+.++.+ .+...+....++.++..++++++.|++.|+.. ++.+..++.++.+++.+...+.++.+.++
T Consensus 323 ~~~~~~g----------~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~ 392 (509)
T KOG2504|consen 323 SYAKSLG----------LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLI 392 (509)
T ss_pred HHHhhcC----------CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8887665 77778889999999999999999999999987 45566777777788877777888888888
Q ss_pred HHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHhe
Q 011365 385 GLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGISV 463 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 463 (487)
....++|++.+.........+.|+++.++-..++|+...+..++..++|++.|++.|..| +...++..+++.+++..+.
T Consensus 393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 889999999999988888999999999999999999999999999999999999999998 4455555555555555444
Q ss_pred ee
Q 011365 464 LL 465 (487)
Q Consensus 464 ~~ 465 (487)
++
T Consensus 473 ~~ 474 (509)
T KOG2504|consen 473 LI 474 (509)
T ss_pred HH
Confidence 33
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=205.55 Aligned_cols=308 Identities=13% Similarity=0.068 Sum_probs=214.6
Q ss_pred hcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhhhccc
Q 011365 42 LNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCLVGLGLGG 106 (487)
Q Consensus 42 ~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~ 106 (487)
++++.+..+.+++. ++..|.+ |+|||+++.++.++.+++.+++.. .++++.+++.|++.|+|.|.
T Consensus 31 ~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~ 110 (410)
T TIGR00885 31 QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGF 110 (410)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHH
Confidence 35566655554433 3444555 999999999999999999988654 36899999999999999999
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc--------------------------hhhhHHHHH
Q 011365 107 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--------------------------RLGWRWLLG 159 (487)
Q Consensus 107 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~--------------------------~~~w~~~f~ 159 (487)
. +...+++.+..|+++|++.+++.+...++|..++|.++..+.. ..+||.+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl 190 (410)
T TIGR00885 111 LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYM 190 (410)
T ss_pred HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888999999999999999999999999999999999887742 246999999
Q ss_pred HhHHHHHHHHHHHHhc--CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcc
Q 011365 160 LSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237 (487)
Q Consensus 160 ~~~~~~~i~~~~~~~l--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
+.+++.++..+...+. ||.++ ++.++ ..
T Consensus 191 ~~a~~~~~~~~~~~~~~~p~~~~-----~~~~~-~~-------------------------------------------- 220 (410)
T TIGR00885 191 IIGAVVLAVALLIMLTKMPALNH-----SDAKQ-IS-------------------------------------------- 220 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCc-----ccccc-cc--------------------------------------------
Confidence 8888776654443332 32111 00000 00
Q ss_pred cccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 011365 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS 317 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (487)
...+.+++++++..+. ..+..+.+.........+.+.+.++.+
T Consensus 221 ------------------------------~~~~~~~~~~~~~~~~---~~l~~f~yvg~e~~~~s~l~~y~~~~~---- 263 (410)
T TIGR00885 221 ------------------------------FSASLSRLARIRHYRE---GVIAQFFYVGVQIMCWTFIIQYAVRLI---- 263 (410)
T ss_pred ------------------------------chhhHHHHHhChhHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 0002233444433332 222233333333344456666653321
Q ss_pred ccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhh
Q 011365 318 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 397 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
.+.+...+.........+..+|+++++++.||+++|+.+.++..++++..++....++. .......+.+++.+..
T Consensus 264 ----~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-~~~~~l~~~glf~s~~ 338 (410)
T TIGR00885 264 ----PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-VGLYCLTLCSAFMSLM 338 (410)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHH
Confidence 01222222334555557778999999999999999999888888888877777765543 3456677788888999
Q ss_pred hHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 398 FTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
+|..++...+..+++.+..+.++.... +|+.+.|++.|++.|..
T Consensus 339 fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 339 FPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 999999999999877654455555544 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=203.02 Aligned_cols=310 Identities=12% Similarity=-0.006 Sum_probs=210.2
Q ss_pred hHHHHHHHH--Hhhhh----HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 54 FSFSLFGRL--LLSFR----KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
+.+++.|.+ |+||| +.+.+...+. .......+++++.+++.|++.|++.+.. +...++..++ +++|+++
T Consensus 54 l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a 129 (382)
T PRK11128 54 LGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLD 129 (382)
T ss_pred hhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCC
Confidence 335556665 88883 3333222222 2233445688999999999999998887 7777777776 4568888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCC
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKL 206 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (487)
.+......++|.+++|++++++.+++|||..|++.++..++..+...+.||.++ +++.++..
T Consensus 130 ~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------- 191 (382)
T PRK11128 130 YGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESRQQE-------------- 191 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccccccc--------------
Confidence 999999999999999999999999999999998877655554444444443221 00000000
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHH
Q 011365 207 PSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
+ +...+++++++++..+....
T Consensus 192 --------------------------------------------------------~---~~~~~~~~i~~~~~~~~~~~ 212 (382)
T PRK11128 192 --------------------------------------------------------S---AGWPAWKALLKEPTVWRFLL 212 (382)
T ss_pred --------------------------------------------------------c---cccchHHHHHcChhHHHHHH
Confidence 0 00015666777654443333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
. .+.....+.....+.|.+.++.+ .+....+....+..++.++..++.+++.||+++|+.+..+.++
T Consensus 213 ~---~~l~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~ 279 (382)
T PRK11128 213 C---VSLLQGSHAAYYGFSAIYWQAAG----------YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC 279 (382)
T ss_pred H---HHHHHHHhHhHHHHHHHHHHHCC----------CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 2 22222223333344455554333 5555556777777788888899999999999999999888888
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHH-HhHhHhHHHHHHHHHHhhccc
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSI-GRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~i~g~l~~~~g~ 445 (487)
.++..+.+...++.+...+..++.+++.+...+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 280 GVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 888777777777777777777888888888888888888886 455678999988744 467779999999999999886
Q ss_pred hhHHHHHHHHHHHH
Q 011365 446 TAALILFELVILLS 459 (487)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (487)
..++..+++.+++
T Consensus 359 -~~~~~~~~~~~~~ 371 (382)
T PRK11128 359 -GVFWVMALVALPA 371 (382)
T ss_pred -HHHHHHHHHHHHH
Confidence 4555555554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=201.26 Aligned_cols=294 Identities=16% Similarity=0.097 Sum_probs=201.3
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
.++.|.+ |+|||+++.++..+.+++.+++.++++++.+++.|++.|++.+.. +....+..|.+++++|+++.++...
T Consensus 60 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (394)
T PRK11652 60 QLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNM 139 (394)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4445665 999999999999999999999999999999999999999998887 6667888899999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCC
Q 011365 133 FWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNL 211 (487)
Q Consensus 133 ~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (487)
+..+|..++|.+++.+.+..+||..|++.++..++. ++..+++||+++.. ++.++.
T Consensus 140 ~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------- 196 (394)
T PRK11652 140 GILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---ARRTRV-------------------- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cchhHH--------------------
Confidence 999999999999999988889999999988776655 44455667754310 000000
Q ss_pred CcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHH
Q 011365 212 VSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVF 291 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (487)
..++++.++++..+..+...+..
T Consensus 197 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 219 (394)
T PRK11652 197 ---------------------------------------------------------LASYRTLLSNRRFNCYLLMLIGT 219 (394)
T ss_pred ---------------------------------------------------------HHHHHHHHcChHHHHHHHHHHHH
Confidence 01455555555444433332222
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH-HHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS-MFFCCCIF 370 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~ 370 (487)
+.... ....+.+.+.++. .+.+....+.......++.+++..+.+++.||.+++..... +..+..+.
T Consensus 220 ~~~~~---~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (394)
T PRK11652 220 LAGIA---VFEACSGVLMGAV---------LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLL 287 (394)
T ss_pred HHHHH---HHHHhChHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1112223333221 11444444555556667777788888888888874333222 22222222
Q ss_pred HHhHhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 371 LVPLLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 371 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
...... ..+.+.......+.+++.+...+...+...|.+| ++++++.++.+....+|..+++.+.+.+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 288 MWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 222211 2233444555667777888888999998999887 5689999999999999999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=233.95 Aligned_cols=305 Identities=14% Similarity=-0.005 Sum_probs=214.6
Q ss_pred hhHHHHHHHH--HhhhhHHHHH---HHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLI---TAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
.+.+++.|.+ |+|||+++.. ..++.++..+.....+++++++++|+++|++.+.. ++..+++.+++++++|+++
T Consensus 66 ~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a 145 (1140)
T PRK06814 66 FIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGA 145 (1140)
T ss_pred HHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchh
Confidence 3456677877 9999997643 22233333333334589999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCC
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKL 206 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (487)
+|+.+++.++|.++||++++++....+|+..|+..++..++.++..+++|+++... ++...+ ....+.
T Consensus 146 ~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~--------- 213 (1140)
T PRK06814 146 NALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID-RNIIRS--------- 213 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec-cchHHH---------
Confidence 99999999999999999999999999999999666666666666666777654310 000000 000000
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHH
Q 011365 207 PSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
....++.+.+++..+...+
T Consensus 214 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 232 (1140)
T PRK06814 214 -------------------------------------------------------------TITLLKYAKADKRIWLAIL 232 (1140)
T ss_pred -------------------------------------------------------------HHHHHHHHhcCchHHHHHH
Confidence 0115556666544443332
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
..+...+....+..+.|.+..+. .+.+....+...+...++.++|.++.+++.|+..+++.+..+.++
T Consensus 233 ---~~~~~~~~~~~~~~~~p~~~~~~---------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 233 ---GISWFWLVGAVVLSQLPLLAKET---------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred ---HHHHHHHHHHHHHHHhHHHHHHH---------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence 22223333344445667666432 125555567888899999999999999999887766655544444
Q ss_pred HHHHHHhHhcc--------------------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh
Q 011365 367 CCIFLVPLLFQ--------------------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR 426 (487)
Q Consensus 367 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 426 (487)
.+++.+.+.+. .+.+...+..++.|++.+...+...+++.+.+|++.+|+++|+.+++..
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence 44433322221 4445556667778888888888899999999999999999999999999
Q ss_pred HhHhHHHHHHHHHHhh
Q 011365 427 IGGMVCPLVAVALVHG 442 (487)
Q Consensus 427 ~g~~~~~~i~g~l~~~ 442 (487)
++..+++.+.|.+.+.
T Consensus 381 ~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 381 AFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=201.26 Aligned_cols=295 Identities=15% Similarity=0.149 Sum_probs=198.8
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
++.++.|.+ |+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.
T Consensus 41 ~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (377)
T PRK11102 41 IGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFV 120 (377)
T ss_pred HHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334555665 999999999999999999999999999999999999999999988 77889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
.....+|..++|.+++.+.+..+||..|++.+++.++. ++..+++||+++.. ++++.+.++
T Consensus 121 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------- 182 (377)
T PRK11102 121 TLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKE--RRQPFHLRT---------------- 182 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCccc--ccCCCChHH----------------
Confidence 99999999999999999998889999999888877776 44455666654210 000000000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
..+++++.++++...... +
T Consensus 183 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~---~ 201 (377)
T PRK11102 183 ----------------------------------------------------------TIRNFASLFRHKRVLGYM---L 201 (377)
T ss_pred ----------------------------------------------------------HHHHHHHHHcChHHHHHH---H
Confidence 001344455553333222 2
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCI 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 369 (487)
..+......+....+.|.+..+. .+.+..+.+.......++.+++.++.+++.||+|+|+.+..+..+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~---------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIEL---------NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHH---------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 22222222333333334433221 125556667778888889999999999999999999988877765443
Q ss_pred HHHhHh---ccC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHHHHHH
Q 011365 370 FLVPLL---FQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVAV 437 (487)
Q Consensus 370 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g 437 (487)
..+.+. ..+ +.+...+...+...+.+...+.......|..| +.++++.++.+.... +|..+++.+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 273 MGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322221 112 22222333333333444444555566777776 679999999877654 66666665543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=200.16 Aligned_cols=319 Identities=15% Similarity=0.044 Sum_probs=210.8
Q ss_pred hhHHHHHHHH--Hh-----hhhH-HHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCC
Q 011365 53 SFSFSLFGRL--LL-----SFRK-GFLITAIVTSAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA 120 (487)
Q Consensus 53 ~~~~~~~G~~--r~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~ 120 (487)
++..+++|.+ |+ |||| .+.++.++.+++..+.++. .+++.+++..++.++..+.. ++..+++.|+.|+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3556677777 77 8876 6888888888888777776 35777888888888887777 7888999999999
Q ss_pred CCchhHHHHHHHHHHHhHHHHHHHHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHH
Q 011365 121 PNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIA 199 (487)
Q Consensus 121 ~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~ 199 (487)
++|+++.++...+.++|.++++.++..+.+. .|||..|++.++..++..+..+++||+++.. ++.++..+ +
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~---~-- 197 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE---A-- 197 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH---H--
Confidence 9999999999999999999999999988875 5999999998888777655566677654310 00000000 0
Q ss_pred hHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChH
Q 011365 200 KINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 279 (487)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (487)
...+++++++++
T Consensus 198 --------------------------------------------------------------------~~~~~~~l~~~~ 209 (402)
T PRK11902 198 --------------------------------------------------------------------VVGPLRDFFSRR 209 (402)
T ss_pred --------------------------------------------------------------------HHHHHHHHHhCc
Confidence 001556667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhh-hhcchhHHHHHHHHHhhhhhhH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFIT-SFAEFPGLLLAAAMVDRLGRKL 358 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~g~r~ 358 (487)
..+..+.............+. ...+.+.++.| .+.+..+...... .++.+++.++.+++.||+++|+
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~~--~~~~~l~~~~G----------~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAGS--LSTTFLIRGAG----------FSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHHH--HHHHHHHHhcC----------CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555444433332222111111 12233332222 5555555554443 3457889999999999999998
Q ss_pred HHHHHHHHHHHHHHhH---hcc-CCcchHHHHHH----HHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHh
Q 011365 359 SMSSMFFCCCIFLVPL---LFQ-QPKGLTTGLLF----GARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGM 430 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 430 (487)
.+..+..+..+..+.+ ... ++.+......+ ..++..+...+....++.+.+|.+ ..++.+....++..
T Consensus 278 ~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~ 353 (402)
T PRK11902 278 SLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRV 353 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHH
Confidence 8776666555443332 232 23333333332 344445555666777777777654 44566666677777
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHhe
Q 011365 431 VCPLVAVALVHGCHQTAALILFELVILLSGISV 463 (487)
Q Consensus 431 ~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 463 (487)
+++.+.|.+.|..|+...+...+++.+++.++.
T Consensus 354 ~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 354 YVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 777789999999998887877777776665554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=203.96 Aligned_cols=334 Identities=13% Similarity=0.051 Sum_probs=213.3
Q ss_pred hhhHHHHHHHH--Hhhh-hHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHH--------hhcC
Q 011365 52 SSFSFSLFGRL--LLSF-RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFL--------EFIP 119 (487)
Q Consensus 52 ~~~~~~~~G~~--r~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~--------~~~~ 119 (487)
..+..++.|.+ |+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+.. +...++.. |...
T Consensus 51 ~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 130 (418)
T TIGR00889 51 AILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVT 130 (418)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchh
Confidence 33445666776 8854 77888888888888888889999999999999999987766 55544432 2233
Q ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHH
Q 011365 120 APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIA 199 (487)
Q Consensus 120 ~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~ 199 (487)
...|.|..| .+|.+++|.+++.+.....|+ .|++.++..++..+..+++||+|+.. +++..+.++..
T Consensus 131 ~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~---- 197 (418)
T TIGR00889 131 DFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVAK--STAKMSIKVML---- 197 (418)
T ss_pred cCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCCc--cccccCHHHHh----
Confidence 334555555 468888888888774333454 45566665655555566778775310 00000000000
Q ss_pred hHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChH
Q 011365 200 KINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 279 (487)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (487)
+. +.++++|++
T Consensus 198 --------------------------------------------------------------------~~-~~~~~~k~~ 208 (418)
T TIGR00889 198 --------------------------------------------------------------------GL-DAFILFKNK 208 (418)
T ss_pred --------------------------------------------------------------------hh-hHHHHhcCC
Confidence 00 223344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS 359 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 359 (487)
....+. ...+...........+.+.+.++.+... ..-.+......+...++..+..+++.++.+++.||+|+|++
T Consensus 209 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~ 283 (418)
T TIGR00889 209 RMAIFF---FFSMLLGAPLQITNIFGNGFLHEFGRNP--EFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV 283 (418)
T ss_pred CeeeHH---HHHHHHHhHHHHHHHhHHHHHHHhcccc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 222222 2222222222222233344443322000 00000122344777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCC-c---chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHH-HHHhHhHhHHHH
Q 011365 360 MSSMFFCCCIFLVPLLFQQP-K---GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVAS-SIGRIGGMVCPL 434 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~ 434 (487)
+..+.++.++....+....+ . +...+..++.+++.+...+....++.|.+|++.|++++|+.+ ....+|.+++|.
T Consensus 284 l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 284 MLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99998888887665554322 1 233445666777777777888889999999999999999997 567899999999
Q ss_pred HHHHHHhhcc------chhHHHHHHHHHHHHHHheeeccccCCC
Q 011365 435 VAVALVHGCH------QTAALILFELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 435 i~g~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
+.|++.|..| |...+.+.+++.++++++.+++.||+++
T Consensus 364 l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 364 LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999854 5666777777777777777777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=201.68 Aligned_cols=325 Identities=16% Similarity=0.107 Sum_probs=245.6
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc-----hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCch
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRG 124 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~ 124 (487)
.+.+++.|.+ |++|||+++.+.++.++..++.++. .+.+.+++.-++.|++.+.. |+-.+.+.|.+|+++..
T Consensus 59 ~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~ 138 (524)
T PF05977_consen 59 LLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLP 138 (524)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 3456667777 9999999999998877655444332 47888999999999999999 88889999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
.++++.+...++..++||.++|.+....|-...|.+.++..++.+......+..+. .++. +.++..+.+
T Consensus 139 ~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~--~~e~~~~~l------ 207 (524)
T PF05977_consen 139 AANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSL--PRERFFSAL------ 207 (524)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---cccc--chhhhhhhH------
Confidence 99999999999999999999999999899999999998877776555444433221 0000 001111111
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
...++.+.+++..+..
T Consensus 208 ----------------------------------------------------------------~~G~ryv~~~~~l~~~ 223 (524)
T PF05977_consen 208 ----------------------------------------------------------------REGLRYVRSSPPLRSV 223 (524)
T ss_pred ----------------------------------------------------------------HHHHHHHhcchHHHHH
Confidence 0155555655555544
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
+.....+..... .+...+|.+.++. .+.+....++..+..+++.++|.++.+++.+|+++++++..+.
T Consensus 224 l~~~~~~~l~~~---a~~aLlPl~a~~~---------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~ 291 (524)
T PF05977_consen 224 LLRSFLFNLFAS---AVWALLPLFARDV---------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS 291 (524)
T ss_pred HHHHHHHHHhhh---HHHHhhhHHHHHH---------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence 433333222222 2223456655321 1144445588889999999999999999999999998888888
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
++.+++++.+.+.++.+...+..++.|++.....+...+..++..|++.||++++++.+....+..+|..+.|.+.+..|
T Consensus 292 ~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 292 LLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888899999999889999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhee
Q 011365 445 QTAALILFELVILLSGISVL 464 (487)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (487)
....+.+.+++.+++.++..
T Consensus 372 ~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 372 VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777666655555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=198.80 Aligned_cols=285 Identities=13% Similarity=0.120 Sum_probs=201.6
Q ss_pred HHHHHHH--Hh-----hhhHHH-HHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCc
Q 011365 56 FSLFGRL--LL-----SFRKGF-LITAIVTSAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR 123 (487)
Q Consensus 56 ~~~~G~~--r~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r 123 (487)
.+++|.+ |+ ||||.+ +.+.++.++.....++. .+.+.+....++.+++.+.. ++..+++.|++|+++|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 5566666 55 999975 56777777777777776 45666777788888888877 7778999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhchhh--------hHHHHHHhHHHHHHHHHHHHh-cCCCchhhhhcCChHHHHHH
Q 011365 124 GFWMVIFQTFWTVGTILEAGIAWLVMPRLG--------WRWLLGLSAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHV 194 (487)
Q Consensus 124 ~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~--------w~~~f~~~~~~~~i~~~~~~~-l~e~p~~~~~~~~~~~~~~~ 194 (487)
+++.++...+.++|.++++.+++.+.+..+ ||..|++.++..++..+..++ .||+++. +++.++..+
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~- 193 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ- 193 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH-
Confidence 999999999999999999999999988878 999999998887776555443 4553220 000000000
Q ss_pred HHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHH
Q 011365 195 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 274 (487)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (487)
+ ....+++
T Consensus 194 --~----------------------------------------------------------------------~~~~~~~ 201 (356)
T TIGR00901 194 --A----------------------------------------------------------------------VLKPIRE 201 (356)
T ss_pred --H----------------------------------------------------------------------HHHHHHH
Confidence 0 0014455
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhh-hcchhHHHHHHHHHhh
Q 011365 275 LLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDR 353 (487)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr 353 (487)
+++++..+..+...+..+.....++....+.|.+.++.| .+..+.+......+ +..+++.++++++.||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----------~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r 271 (356)
T TIGR00901 202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMG----------FSKEEIALVAKINGLLGAILGGLIGGIIMQP 271 (356)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 555543333444444444455666666667777765433 55555555554444 5678899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhcc-----------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHH
Q 011365 354 LGRKLSMSSMFFCCCIFLVPLLFQ-----------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVAS 422 (487)
Q Consensus 354 ~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (487)
+|+|+.+..+.++.++....+.+. ++.+......++.+++.+...+...++..|.+|+++||+.+|+.+
T Consensus 272 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 351 (356)
T TIGR00901 272 LNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLS 351 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 999988887777776655544332 122444455566688888899999999999999999999999998
Q ss_pred HHHh
Q 011365 423 SIGR 426 (487)
Q Consensus 423 ~~~~ 426 (487)
+..+
T Consensus 352 ~~~~ 355 (356)
T TIGR00901 352 SLSA 355 (356)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=198.60 Aligned_cols=308 Identities=18% Similarity=0.137 Sum_probs=214.7
Q ss_pred hcccccccchhhh----------HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 42 LNLHFSESDQSSF----------SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 42 ~~~~~~~~~~~~~----------~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
++++.+..+.+++ ..++.|.+ |+|||+++.++.++..++.+++ .+++++.+++.|++.|++.+.. +
T Consensus 28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~ 106 (355)
T TIGR00896 28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINV 106 (355)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhc
Confidence 4566666555443 23445555 9999999999999888888877 7789999999999999999887 6
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh--hhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcC
Q 011365 109 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKG 186 (487)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~ 186 (487)
.....+.|+++ ++|++++++...+.++|..+++.+++.+.+.. +||..|...++..++... .++|+.++. +
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~----~ 179 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR----V 179 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc----c
Confidence 66677788885 68999999999999999999999988887654 399998877665444322 223332210 0
Q ss_pred ChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhcccc
Q 011365 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNM 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (487)
++++ . . .
T Consensus 180 ~~~~-------------~--~------------------------------------------------------~---- 186 (355)
T TIGR00896 180 AANQ-------------T--T------------------------------------------------------T---- 186 (355)
T ss_pred CCCC-------------C--C------------------------------------------------------C----
Confidence 0000 0 0 0
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHH
Q 011365 267 GGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346 (487)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (487)
....+++++++.. +......+.....++....+.|.+.++.+ .+....+...+...++.++++++
T Consensus 187 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lp~~~~~~g----------~~~~~~g~~~~~~~~~~i~~~~~ 251 (355)
T TIGR00896 187 --RLTPVRIWRSPLA---WQVTVFFGLQSGLYYSLIGWLPAILISHG----------ASAATAGSLLALMQLAQAASALL 251 (355)
T ss_pred --CCCCchhhcCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 0012223343322 22223333445555666677888775544 66666678888899999999999
Q ss_pred HHHHHhhh-hhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC-CcchhHHHHHHHHH
Q 011365 347 AAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP-TSVRTTGVGVASSI 424 (487)
Q Consensus 347 ~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~ 424 (487)
.|++.||+ +||+.+..+..+.+++.+.+.+..+.... ....+.+++.+..++...+...+..+ +++++...++.+..
T Consensus 252 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (355)
T TIGR00896 252 IPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSI 330 (355)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999 46666666666666666555544333222 24566788888888877776665444 56678999999999
Q ss_pred HhHhHhHHHHHHHHHHhhccch
Q 011365 425 GRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 425 ~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
.+++..++|.+.|++.|+.|.+
T Consensus 331 ~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 331 GYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988754
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=204.73 Aligned_cols=323 Identities=19% Similarity=0.209 Sum_probs=222.8
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHH
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTF 133 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~ 133 (487)
...|.+ |++..+.+....+.+++-.++.....|++.+++.|++.|+.++.. |....++..|+.+++|++.++++.+.
T Consensus 99 ~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~ 178 (495)
T KOG2533|consen 99 FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYAS 178 (495)
T ss_pred hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHh
Confidence 334444 999888888888888888888888999999999999999999999 88999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhh------chhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCC
Q 011365 134 WTVGTILEAGIAWLVM------PRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKL 206 (487)
Q Consensus 134 ~~lG~~i~~~~~~~l~------~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (487)
.++|.++|++++..+. ...|||+.|++.+++.++. ++.++++|++|....-..+ +|..-..++.++.+...
T Consensus 179 ~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~-~ek~~~~~~~~~~~~~~- 256 (495)
T KOG2533|consen 179 ASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD-EEKELVVERLRESPSGG- 256 (495)
T ss_pred cchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch-HHHHHHHHHHHhccCCC-
Confidence 9999999999998863 3579999999999988887 6677889999872211111 11111111111111000
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHH
Q 011365 207 PSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
..++..+..+++.++. +.++.
T Consensus 257 --------------------------------------------------------~~~~~~~~~~~~a~~d---p~vw~ 277 (495)
T KOG2533|consen 257 --------------------------------------------------------IENKFKWKGFKEALKD---PGVWP 277 (495)
T ss_pred --------------------------------------------------------cccccCHHHHHHHHhc---hhHHH
Confidence 0000233477777777 56667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh----hhhhHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKLSMSS 362 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~ 362 (487)
..++.++.....+++..|.|.+.++. .+++..++..+.+...++++++.+++|+++|| ..+|.....
T Consensus 278 ~~l~~~~~~lv~~~~~~~lpl~l~~~---------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 278 FSLCYFFLKLVNYGFSYWLPLYLKSN---------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV 348 (495)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHcC---------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 77888888888999999999998651 12666677888889999999999999999999 556665555
Q ss_pred HHHHHHH-HHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHH-HHHHHHHHhHhHhHHHHHHHH-H
Q 011365 363 MFFCCCI-FLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTG-VGVASSIGRIGGMVCPLVAVA-L 439 (487)
Q Consensus 363 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~g~~~~~~~~g~~~~~~i~g~-l 439 (487)
...+..+ +...+.............+....+.....+......++...++.|... .+......+.++.++|.+.-. .
T Consensus 349 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ 428 (495)
T KOG2533|consen 349 FLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLD 428 (495)
T ss_pred HHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccccc
Confidence 4444433 334444443344444444444555566667777777777766544443 444444455666665555432 2
Q ss_pred HhhccchhHH
Q 011365 440 VHGCHQTAAL 449 (487)
Q Consensus 440 ~~~~g~~~~~ 449 (487)
...+++...+
T Consensus 429 ap~y~~~~~f 438 (495)
T KOG2533|consen 429 APRYGWGAVF 438 (495)
T ss_pred CcchhhhhHH
Confidence 2233444445
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=204.40 Aligned_cols=335 Identities=14% Similarity=0.063 Sum_probs=207.1
Q ss_pred hhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHh---hchh-----HHHHHHHHHHHhhhccch-HHHHHHHHhhcCC
Q 011365 52 SSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSA---FAPN-----YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA 120 (487)
Q Consensus 52 ~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~ 120 (487)
..+..++.|.+ |+|||++++++..+.+++..... .++. ....++.+++.|.+.... +....+..+ . +
T Consensus 59 ~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 136 (420)
T PRK09528 59 ALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-S 136 (420)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-H
Confidence 33556677877 99999999887666555433221 1111 111223344444433333 333333322 2 3
Q ss_pred CCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHh
Q 011365 121 PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAK 200 (487)
Q Consensus 121 ~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~ 200 (487)
+++++.++......++|..++|.+++.+.+ .+|+..|++.+++.++.++..++++++++.. .+..++ + +
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~--~ 205 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-----AKVANA---L--G 205 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-----hhhccc---h--h
Confidence 456788899999999999999999998876 5899999998888777765555544332210 000000 0 0
Q ss_pred HhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHH
Q 011365 201 INGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL 280 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (487)
.+ ++....+..++.++++.
T Consensus 206 ~~-------------------------------------------------------------~~~~~~~~~~~~l~~~~ 224 (420)
T PRK09528 206 AN-------------------------------------------------------------ASAVSLKDALALLKLPK 224 (420)
T ss_pred cc-------------------------------------------------------------cccccHHHHHHHccCCC
Confidence 00 00000113344555443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
.+...+. .+.....+.....+.|.+..+.. .+.+.+....+...++..+...++.++.|++.||+|+|+.+
T Consensus 225 ~~~l~l~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 295 (420)
T PRK09528 225 FWFLVLY---VIGVACFYDVFDQQFPNFFASFF------ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL 295 (420)
T ss_pred eEeehHH---HHHHHHHHHHHHHHHHHHHHHHH------hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 3222221 11111122222222333321110 00112333345667777788889999999999999999998
Q ss_pred HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHH-HHHHHhHhHhHHHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGV-ASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~i~g~l 439 (487)
..+..+.++..+++.+.++.+......++.++..+...+....++.|.+|++.+++..+. .++...+|.+++|.+.|++
T Consensus 296 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 296 LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777776766666666667777766667777888999999999988766 6777889999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.|..|+...+...+++.++..++.++..++
T Consensus 376 ~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 376 YDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998888888887777666655555444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=201.68 Aligned_cols=313 Identities=19% Similarity=0.187 Sum_probs=203.3
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
.+.+|++|++ ||+||+++.+|..+|.++.+.++++..||+++++|.+.|+|.+.. +++.++++|.+|..+|++++++
T Consensus 82 ~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i 161 (493)
T KOG1330|consen 82 MIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI 161 (493)
T ss_pred HHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence 3557888998 999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhh-hHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCC
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP 207 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~-w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (487)
++.+..+|..+|.+.+..+....+ ||+.|++.++++++..++ .++.+|+++ +..++... +..+
T Consensus 162 fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~----------~~~~ 226 (493)
T KOG1330|consen 162 FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG----------ENKM 226 (493)
T ss_pred hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc----------CCcC
Confidence 999999999999999988877555 999999999999988544 555565543 11111000 0000
Q ss_pred CCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHH
Q 011365 208 SGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL 287 (487)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (487)
.+...+.+++.+.+.+.+. +.+.
T Consensus 227 ------------------------------------------------------~~~~ts~~kDl~~l~~~~v---~v~~ 249 (493)
T KOG1330|consen 227 ------------------------------------------------------VKPFTSVWKDLKVLAKIKV---FVLS 249 (493)
T ss_pred ------------------------------------------------------CCCccchHHHHHHHHccCc---eeee
Confidence 0001112224444444221 1112
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh----HHHH--
Q 011365 288 WLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK----LSMS-- 361 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~-- 361 (487)
.+.+....+...++..|.|.+..... + -.+.+.+...++..+...++.+|.+++|.++||+.|+ ....
T Consensus 250 sl~~~a~~fv~Gs~sww~p~~~~~~~-----~-~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~ 323 (493)
T KOG1330|consen 250 SLGIIAAQFVIGSLSWWAPAFIYYSY-----E-LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRAS 323 (493)
T ss_pred hHHHHHHHHhccccchhhhhHHHHHH-----H-HhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHH
Confidence 22222222222233333333221100 0 0113455557777888899999999999999995432 1111
Q ss_pred -----HHHHHHHHHHHhHhcc-CCcchHHHHHHHHHHHHHh-hhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHH
Q 011365 362 -----SMFFCCCIFLVPLLFQ-QPKGLTTGLLFGARICITV-TFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCP 433 (487)
Q Consensus 362 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~ 433 (487)
.+..+.+..+.+.... .......+.+++.|..... ......-+..|.+|++.|.+++++...+.. +|.+-+|
T Consensus 324 q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 324 QLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 1112222222222222 2222222333333333332 334556678899999999999999988876 5666667
Q ss_pred HHHHHHHhhc
Q 011365 434 LVAVALVHGC 443 (487)
Q Consensus 434 ~i~g~l~~~~ 443 (487)
.+.|.+.|+.
T Consensus 404 ~ivGilsd~l 413 (493)
T KOG1330|consen 404 YIVGILSDKL 413 (493)
T ss_pred ceehhHHHHh
Confidence 7999999865
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=224.50 Aligned_cols=306 Identities=13% Similarity=-0.012 Sum_probs=213.8
Q ss_pred hhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 53 SFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSA---FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 53 ~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
.+++++.|.+ |+|||++++++.++.+++.++.. .+++++.++++|+++|++.+.. ++..+++.|++|+++|+++
T Consensus 61 ~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 140 (1146)
T PRK08633 61 LLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRA 140 (1146)
T ss_pred HHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhh
Confidence 3445666777 99999999998877666555443 4578999999999999999998 8888999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhch---------hhhHHHHHHhHHH-HHHHHHHHHhcCCCchhhhhcCChHHHHHHHH
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPR---------LGWRWLLGLSAFP-SSLLLLLYSVTPESPRYLCLKGRTAEARHVLE 196 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~---------~~w~~~f~~~~~~-~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~ 196 (487)
+++...+.++|.++++.+++++... .+|++.+.+..+. .++.++..+.+||.|.....+++.++ ...
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 217 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-YLF-- 217 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc-ccc--
Confidence 9999999999999999999998765 2344444443333 33334555666776642110000000 000
Q ss_pred HHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhh
Q 011365 197 KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILL 276 (487)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (487)
.......++.++
T Consensus 218 --------------------------------------------------------------------~~~~~~~~~~l~ 229 (1146)
T PRK08633 218 --------------------------------------------------------------------PKLLWRNLKLLR 229 (1146)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHh
Confidence 000111555666
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCcccc-ccchhhhhhhhcchhHHHHHHHHHhhhh
Q 011365 277 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD-INYGDVFITSFAEFPGLLLAAAMVDRLG 355 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g 355 (487)
+++..+..++.... .....+....+.|.+..+. .+.+.. ..++..+...++.+++.++.+++.||++
T Consensus 230 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~ 297 (1146)
T PRK08633 230 SDRVLWLAIIGLSY---FWFISQLAQANFPAYAKEV---------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHI 297 (1146)
T ss_pred cCcHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHH---------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 66544433222222 2222223333445444221 124555 5577778888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 356 RKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 356 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
+++.+.++.++.+++.+.+.+..+.+...+..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 298 ELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred EccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 98888888777777777766666666666777788888888888889999999999999999999999999999888877
Q ss_pred HHHHHh
Q 011365 436 AVALVH 441 (487)
Q Consensus 436 ~g~l~~ 441 (487)
.+.+..
T Consensus 378 ~~~l~~ 383 (1146)
T PRK08633 378 TTLFSG 383 (1146)
T ss_pred HHHHHH
Confidence 765543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=197.13 Aligned_cols=296 Identities=17% Similarity=0.219 Sum_probs=193.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||+.+.++.++.+++.+++++++ +++.+++.|+++|++.+..+...+++.|++|+++|++++++.
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 131 (366)
T TIGR00886 52 VLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLA 131 (366)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHH
Confidence 344556666 99999999999999999999999999 999999999999999665566678999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhc----------hhhhHHHH-HHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHH
Q 011365 131 QTFWTVGTILEAGIAWLVMP----------RLGWRWLL-GLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKI 198 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~----------~~~w~~~f-~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~ 198 (487)
....++|..+++.+++.+.. ..+||+.| +..++..++. ++...+.+|+|+.. + ++.+...+
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~-- 204 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----P-ATGKLSFK-- 204 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----c-cchhcccc--
Confidence 98888888888777766553 24899999 4444444443 44455556665310 0 00000000
Q ss_pred HhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh
Q 011365 199 AKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 278 (487)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (487)
+. . . .. ++......++.+++
T Consensus 205 ---~~----------------------------~-~------~~----------------------~~~~~~~~~~~~~~ 224 (366)
T TIGR00886 205 ---GA----------------------------R-W------SV----------------------GTGALGDQLKVFRD 224 (366)
T ss_pred ---cc----------------------------c-c------cc----------------------cchhHHHHHHHHhc
Confidence 00 0 0 00 00000023334443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH
Q 011365 279 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL 358 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 358 (487)
+. .+...+..+......+....+.|.+.++. .+.+....+....+..+..++++++.|++.||+|+|+
T Consensus 225 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 292 (366)
T TIGR00886 225 RH---TWILALLYSVTFGSFLGVSSIFAMFFKDQ---------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR 292 (366)
T ss_pred cc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence 22 22333333334444455556666666432 1255555676777788888999999999999999988
Q ss_pred HHHHHHHHHHHHHHhHhc--cC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhH
Q 011365 359 SMSSMFFCCCIFLVPLLF--QQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGG 429 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 429 (487)
.+..+....+.+...+.. .. +.+.......+..++.+...+..+....+..| +++|+++|+.+...++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 293 KLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 776666555555444433 22 33333344455555666666777888888887 579999999999887763
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=176.70 Aligned_cols=337 Identities=13% Similarity=0.132 Sum_probs=241.1
Q ss_pred cccccccCccccchh-cccccccchhhhHHHHH----------HHH--HhhhhHHHHHHHHHHHHHHHHHh---hchhHH
Q 011365 28 AFDVPELSWNTTTLL-NLHFSESDQSSFSFSLF----------GRL--LLSFRKGFLITAIVTSAAGLLSA---FAPNYY 91 (487)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------G~~--r~Grr~~l~~~~~~~~~~~~~~~---~~~~~~ 91 (487)
|+.....+...+... -++++..+.+.+-..++ |.+ |+|+|+.+++++.++++++.++. -..+|.
T Consensus 26 G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~ 105 (422)
T COG0738 26 GFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYG 105 (422)
T ss_pred HHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 455555555555543 56677777766543333 222 99999999999999999999986 446789
Q ss_pred HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-------------------
Q 011365 92 LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR------------------- 151 (487)
Q Consensus 92 ~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~------------------- 151 (487)
.++++-++.|.|.+.. ..+++++....++++..+-+++.+...++|.+++|++++.+..+
T Consensus 106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~ 185 (422)
T COG0738 106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADA 185 (422)
T ss_pred HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 9999999999999999 88999999999999999999999999999999999999987652
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHhc--CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCC
Q 011365 152 LGWRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 229 (487)
Q Consensus 152 ~~w~~~f~~~~~~~~i~~~~~~~l--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (487)
..|+.+|...+...++..+..... |+.+. .++++.
T Consensus 186 ~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----~~~~~~-------------------------------------- 222 (422)
T COG0738 186 SSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----AAPSLG-------------------------------------- 222 (422)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----cccccc--------------------------------------
Confidence 137777777666555554433322 22211 000000
Q ss_pred CCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011365 230 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 309 (487)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (487)
+.+.....+++++++.+...+..++ +.........|++.+.
T Consensus 223 ------------------------------------~~~~~~~~~l~~~~~~~~gvl~~Fl---YVG~Eva~gsfl~~y~ 263 (422)
T COG0738 223 ------------------------------------ASGSAGLSSLFQNKHLRLGVLAIFL---YVGAEVAIGSFLVSYL 263 (422)
T ss_pred ------------------------------------ccccchHHHHHhChHHHHHHHHHHH---HHhHHHHHHHHHHHHH
Confidence 0000034566666655554444444 3344444555666666
Q ss_pred ccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHH
Q 011365 310 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFG 389 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (487)
.+. .+.+..++....+.+..+.++|++++.++..|+...|.+....++..+.++...+.++ .......++
T Consensus 264 ~~~---------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ 333 (422)
T COG0738 264 EEL---------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-VVALYALFL 333 (422)
T ss_pred Hhc---------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 442 1256667788888999999999999999999999999998888777776666666655 455667788
Q ss_pred HHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 011365 390 ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILL 458 (487)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~ 458 (487)
.|++.+..+|..++...+..| ++ ....|..-.+.-+|+++.|++.|++.|..|....+.....++.+
T Consensus 334 ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 334 IGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred HHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 899999999999999999999 33 44444455566789999999999999999877666544444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=199.68 Aligned_cols=307 Identities=14% Similarity=0.068 Sum_probs=208.5
Q ss_pred chhhhHHHHHHHH------HhhhhH-HHHHHHHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHH
Q 011365 50 DQSSFSFSLFGRL------LLSFRK-GFLITAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFL 115 (487)
Q Consensus 50 ~~~~~~~~~~G~~------r~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~ 115 (487)
....+..++.|.+ |+|||| .++.+....+++.+++.+.++ ...+++.+++.+++.+.. .+..++..
T Consensus 46 i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 125 (437)
T TIGR00792 46 ILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVP 125 (437)
T ss_pred HHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcc
Confidence 3344566777877 589855 566788888888887776654 456677788889888877 56667888
Q ss_pred hhc-CCCCchhHHHHHHHHHHHhHHHHHHHHHHhh-------chhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcC
Q 011365 116 EFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-------PRLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKG 186 (487)
Q Consensus 116 ~~~-~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~-------~~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~ 186 (487)
|.. ++++|++..++.+.+..+|.++++.+.+.+. +..+||..+.+.+++.++..+. ....+|.++.
T Consensus 126 ~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~----- 200 (437)
T TIGR00792 126 AITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE----- 200 (437)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----
Confidence 887 5688999999999999998888777665554 2468999999988887777443 4455554310
Q ss_pred ChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhcccc
Q 011365 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNM 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (487)
++++.+ ++.
T Consensus 201 ~~~~~~-----------------------------------------------------------------------~~~ 209 (437)
T TIGR00792 201 IPKNIE-----------------------------------------------------------------------KKL 209 (437)
T ss_pred CCcccc-----------------------------------------------------------------------cCC
Confidence 000000 000
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHH
Q 011365 267 GGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346 (487)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (487)
.....++.+++++..+.... ..+......+....+.+.+.+... .+....+....+..++.+++.++
T Consensus 210 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~ii~~~~ 276 (437)
T TIGR00792 210 SLKQIFKALFKNDQLLILCL---AYLFYNLAFNIKNGVQVYYFTYVL----------GDPELFSYMGSIAIVAGLIGVLL 276 (437)
T ss_pred CHHHHHHHHhCCHHHHHHHH---HHHHHHHHHHHHcchhheeEeeec----------CChHHHHHHHHHHHHHHHHHHHH
Confidence 01115666676654443332 222233333333333444432211 12223345556668888999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccC-------CcchhHHH
Q 011365 347 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYP-------TSVRTTGV 418 (487)
Q Consensus 347 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~ 418 (487)
.+++.||+|+|+.+..+.++.+++.+.+.+.. +.+...+..++.+++.+...+..+++.+|..+ ++.+|+++
T Consensus 277 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 356 (437)
T TIGR00792 277 FPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY 356 (437)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence 99999999999999888887777766665543 33444555667778888888888999888865 55689999
Q ss_pred HHHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 419 GVASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 419 g~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
|+.++...+|..+++.+.|.+.+..|+
T Consensus 357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 357 SVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-21 Score=188.20 Aligned_cols=442 Identities=12% Similarity=0.068 Sum_probs=249.3
Q ss_pred CCccccCchHHHHHHHHHHHhc-ccccccccCccccchhcccccccchhhh---------HHHHHHHH--HhhhhHHHHH
Q 011365 5 MKMDTVSPCSVLLICFAMIFCD-IAFDVPELSWNTTTLLNLHFSESDQSSF---------SFSLFGRL--LLSFRKGFLI 72 (487)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~--r~Grr~~l~~ 72 (487)
.+.++.++|.++..+..+..+. ..+....+ ..+...+++++..+.+.+ ...+.|.+ |+|+|+++.+
T Consensus 19 ~~~~e~~Rw~~lva~~~~~~~~g~~y~fsv~--s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vlli 96 (591)
T PTZ00207 19 KPINEPRRFALLVLGAFCSICTSFMYAFNLI--SGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVL 96 (591)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4556677888777666555544 11111111 111123444444443332 22245666 9999999999
Q ss_pred HHHHHHHHHHHHhhc------hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHH
Q 011365 73 TAIVTSAAGLLSAFA------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 145 (487)
Q Consensus 73 ~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~ 145 (487)
+.++++++.++++++ ++++.+++.|++.|+|.+.. +.....+.+++| ++||++.|+...+.++|.++.+.+.
T Consensus 97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 68999999999999999888 777788889986 7899999999999999998644444
Q ss_pred HHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCc--hhhhhcCChHHHHHHHHHHHhHh--CCCCCCCCC---------
Q 011365 146 WLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESP--RYLCLKGRTAEARHVLEKIAKIN--GTKLPSGNL--------- 211 (487)
Q Consensus 146 ~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------- 211 (487)
..+.. .+|+..|++.+++.++. ++...++++.| ++..++++.++.++..++..+.. ..+.|..+.
T Consensus 176 ~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~ 254 (591)
T PTZ00207 176 LAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILII 254 (591)
T ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHH
Confidence 43333 46888888888777766 44445554433 33223322233333222211110 001111110
Q ss_pred ----------------Ccchhhh------h-----------hhhhcccCCCCCCCCCcccccccchhhhhhhhcccccch
Q 011365 212 ----------------VSDWEHE------L-----------QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDST 258 (487)
Q Consensus 212 ----------------~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (487)
..+.... + .........++++++. ++..+.+.+ ++..+++.....
T Consensus 255 l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 332 (591)
T PTZ00207 255 LIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDG-KAKEHVEAG-EEVSAAEDKVVE 332 (591)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccc-ccccccccc-cccccccccccc
Confidence 0000000 0 0000000000000000 000000000 000000000000
Q ss_pred hhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccc--cchhhhhh
Q 011365 259 STLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI--NYGDVFIT 336 (487)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 336 (487)
+..+....+...++.+.+++. .+|+++..+++.............++.+..+ +.+.+. .....++.
T Consensus 333 ~~~~~~~P~~~~t~~q~l~~~---d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~---------g~~~~~~~~~~~vsL~ 400 (591)
T PTZ00207 333 TDVDYIAPQFQETFIEGLKTA---RLWCLLWSIFCCVGAHFVIIFNARFIYTALA---------GEAPDDALNTLLTVLN 400 (591)
T ss_pred ccccCCCCCCcchHHHHHhch---hHHHHHHHHHHhhCchheeeecHHHHHHHhc---------CCCCCccceeeehhhh
Confidence 000101011112666666553 3444555555444444444444555554441 132222 23378899
Q ss_pred hhcchhHHHHHHHHHhhhhhhH--------H-HHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhccc
Q 011365 337 SFAEFPGLLLAAAMVDRLGRKL--------S-MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPE 407 (487)
Q Consensus 337 ~~~~~~~~~~~g~l~dr~g~r~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (487)
++++.+|++..|.+.....+|+ . +.+..+ +.+..+++....+...+.+..++.|++.|..+++....++|
T Consensus 401 si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~se 479 (591)
T PTZ00207 401 GVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRT 479 (591)
T ss_pred hHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 9999999999999883332222 2 333333 55555555544443467778889999999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHhHhHhHH-HHHHHHHHhhcc-------------chhHHHHHHHHHHHHHHheeec
Q 011365 408 IYPTSVRTTGVGVASSIGRIGGMVC-PLVAVALVHGCH-------------QTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 408 ~~p~~~~~~~~g~~~~~~~~g~~~~-~~i~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
+|. ++-|+-+-+.....-+|..+- -.+.|.++|.-. ...++++.+++++++.+....+
T Consensus 480 lFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 480 IFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred Hhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 999 889999988888888888777 678888887422 3467788777777666654443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=188.36 Aligned_cols=330 Identities=14% Similarity=0.077 Sum_probs=212.9
Q ss_pred chhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH---hhch-----hHHHHHHHHHHHhhhccch-HHHHHHHHhhc
Q 011365 50 DQSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLS---AFAP-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFI 118 (487)
Q Consensus 50 ~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~ 118 (487)
....+..++.|.+ |+|||+.++.+....+++.... .+.+ .+..+++.+++.|++.+.. +....+..|..
T Consensus 49 l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 128 (396)
T TIGR00882 49 LFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS 128 (396)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Confidence 3344567778887 9999999998776665544322 2222 2334566788999988877 77667776653
Q ss_pred CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc-CCCchhhhhcCChHHHHHHHHH
Q 011365 119 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEK 197 (487)
Q Consensus 119 ~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l-~e~p~~~~~~~~~~~~~~~~~~ 197 (487)
+ +++...+......++|.+++|.+++.+.+ .+||..|++.+++.++..+..+.. ||+|+. ++.++ .
T Consensus 129 ~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---~ 195 (396)
T TIGR00882 129 R--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN---A 195 (396)
T ss_pred h--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc---c
Confidence 3 34567788888889999999999998765 599999999888877765444443 333220 00000 0
Q ss_pred HHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhC
Q 011365 198 IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 277 (487)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (487)
.+ ++ +++...++.+++++
T Consensus 196 -~~-~~------------------------------------------------------------~~~~~~~~~~~~l~ 213 (396)
T TIGR00882 196 -LG-AN------------------------------------------------------------ASAFSLKLALELFR 213 (396)
T ss_pred -cc-cc------------------------------------------------------------cCCCCHHHHHHHHc
Confidence 00 00 00000114566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh
Q 011365 278 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK 357 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 357 (487)
++..+.... ..+.....+.....+.+.+..+... +.+.+....+...++..+...++.+..+++.||+|+|
T Consensus 214 ~~~~~~~~l---~~~~~~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~ 284 (396)
T TIGR00882 214 QRKFWMFVL---YVVGVACVYDVFDQQFANFFTSFFA------TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK 284 (396)
T ss_pred CCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 644332222 2222222222222233333322110 0012223335666677778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHH-HHHHHhHhHhHHHHHH
Q 011365 358 LSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGV-ASSIGRIGGMVCPLVA 436 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~i~ 436 (487)
+.+.++..+.++........++.+......++.+++..........+..+..|++.++++.+. .+....+|+.++|.+.
T Consensus 285 ~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~ 364 (396)
T TIGR00882 285 NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA 364 (396)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence 999888888777776666666666666666666666655555566677788888888887776 6778899999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhe
Q 011365 437 VALVHGCHQTAALILFELVILLSGISV 463 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~ 463 (487)
|++.|..|+...+.+.+++.++..++.
T Consensus 365 G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 365 GNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887777666554
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=176.20 Aligned_cols=319 Identities=17% Similarity=0.095 Sum_probs=209.9
Q ss_pred hhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHH
Q 011365 51 QSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 51 ~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~ 128 (487)
...++++.+|.+ |+|||+++.++.+..++..++.+.+.|+..++++|++.|+..|...+..++++|.+++|+|+++++
T Consensus 80 lQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms 159 (451)
T KOG2615|consen 80 LQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMS 159 (451)
T ss_pred HHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceee
Confidence 344667788888 999999999999999999999999999977777799999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhc---hhhhHHHHHH----hHHHHHH-HHHHHHhcCCCchhhhhcCChHHHHHHHHHHHh
Q 011365 129 IFQTFWTVGTILEAGIAWLVMP---RLGWRWLLGL----SAFPSSL-LLLLYSVTPESPRYLCLKGRTAEARHVLEKIAK 200 (487)
Q Consensus 129 ~~~~~~~lG~~i~~~~~~~l~~---~~~w~~~f~~----~~~~~~i-~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~ 200 (487)
.+...+++|.++||.+++++.. ..| +..|.. ..++... .....+++||+-+. +++.++... ..+..+
T Consensus 160 ~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~---rk~~~~~~~-~~~~~~ 234 (451)
T KOG2615|consen 160 LVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPL---RKRNDEHST-LQEAAD 234 (451)
T ss_pred eeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccc---hhhcccccc-hhhhhh
Confidence 9999999999999999999976 112 122222 2222222 23456778887431 111111000 000000
Q ss_pred HhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHH
Q 011365 201 INGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL 280 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (487)
.+ .+. .+.+.. .--...+++.
T Consensus 235 ----------------~~-~~~-------------------~~~~~~-----------------------~~v~~lrn~p 255 (451)
T KOG2615|consen 235 ----------------DR-LAL-------------------LKFARI-----------------------FKVAALRNPP 255 (451)
T ss_pred ----------------hh-hhh-------------------cchhhh-----------------------hhhhhhcCcc
Confidence 00 000 000000 0000011110
Q ss_pred HH----HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhh-
Q 011365 281 IK----STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG- 355 (487)
Q Consensus 281 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g- 355 (487)
.. ......+..+.+...+.......+.+.+ + ..++++.+.+...+..++.+.+.........+|..
T Consensus 256 ~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~--~-------rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~ 326 (451)
T KOG2615|consen 256 LLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH--G-------RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG 326 (451)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc--C-------ccCCChhhheeeeehhhHHHHHHHHhcccccccccc
Confidence 00 1111222223333333333333333311 1 33467777777777777766666666666666655
Q ss_pred -hhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHH
Q 011365 356 -RKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPL 434 (487)
Q Consensus 356 -~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 434 (487)
.+-.+.....++.-..+++.....+..+.....+..+......+....++....|++.||+.+|+....+.++.++||.
T Consensus 327 ~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPl 406 (451)
T KOG2615|consen 327 NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPL 406 (451)
T ss_pred chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhh
Confidence 4455556666666666666666667777777888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 011365 435 VAVALVHG 442 (487)
Q Consensus 435 i~g~l~~~ 442 (487)
+.|.+...
T Consensus 407 v~g~i~~W 414 (451)
T KOG2615|consen 407 VSGVIFSW 414 (451)
T ss_pred hhheeEEE
Confidence 99977654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=189.27 Aligned_cols=332 Identities=11% Similarity=0.031 Sum_probs=195.6
Q ss_pred HHHHH--H-hhhhHHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHhhhccch-HHHHHHHHhhcCCC--CchhHHHHH
Q 011365 58 LFGRL--L-LSFRKGFLITAIVTSAAGLLSAFAPNYYL-LLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIF 130 (487)
Q Consensus 58 ~~G~~--r-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~~ 130 (487)
+.|.+ | +||||+++++.++++++.++++++++... ++++|+++|+|.|.. +...+++.|++|++ +|++++++.
T Consensus 69 ~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~ 148 (489)
T PRK10207 69 IGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLF 148 (489)
T ss_pred hHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHH
Confidence 44655 7 99999999999999999999999876554 558999999999999 88889999999877 457899999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhh--hcCChHHHHHHHH----------HH
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLC--LKGRTAEARHVLE----------KI 198 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~--~~~~~~~~~~~~~----------~~ 198 (487)
..+.++|..++|.+++++.+++|||+.|++.++..++.++.+...++..+... .++++.+...... ..
T Consensus 149 ~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~ 228 (489)
T PRK10207 149 YMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVC 228 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876544444444444332211000 0010011001000 00
Q ss_pred HhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh
Q 011365 199 AKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 278 (487)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (487)
....... .............. .-.. ..+ +. ...+++|+
T Consensus 229 ~~~~~~~----~~~~~~~~~~~~i~-------------~~~f-----~~~--------------~~------~~~~~~r~ 266 (489)
T PRK10207 229 AWLMHNV----EVANLVLIVLSIVV-------------TIIF-----FRE--------------AF------KLDKTGRN 266 (489)
T ss_pred HHHHhhh----hHHHHHHHHHHHHH-------------HHHH-----HHH--------------Hh------cCCHHHHH
Confidence 0000000 00000000000000 0000 000 00 00011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCcccc-ccchhhhhhhhcchhHHHHHHHHHhhhhh
Q 011365 279 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRD-INYGDVFITSFAEFPGLLLAAAMVDRLGR 356 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 356 (487)
+.... ..++.........+.......+.+.++ .+ +...+.. .......+..+..++..++.+++.||+++
T Consensus 267 r~~~~-~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~-------~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~ 338 (489)
T PRK10207 267 KMFVA-FVLMLEAVVFYILYAQMPTSLNFFAINNVH-------HEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGS 338 (489)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHcccHHHHHHHHhcc-------ccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhh
Confidence 21111 111111222222233332333333321 11 0000111 11233334445566777888999999998
Q ss_pred hH-------HHHHHHHHHHHHHHhH-----hcc-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHH
Q 011365 357 KL-------SMSSMFFCCCIFLVPL-----LFQ-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVG 419 (487)
Q Consensus 357 r~-------~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 419 (487)
|+ .+.++.++.+++++.+ ... .+.+......++.+++.....+...+.+.+..|++.+|.++|
T Consensus 339 r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g 418 (489)
T PRK10207 339 KGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILG 418 (489)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHH
Confidence 86 3556666666555432 111 233455667788899999999999999999999999999999
Q ss_pred HHHHHHhHhHhHHHHHHHHH
Q 011365 420 VASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 420 ~~~~~~~~g~~~~~~i~g~l 439 (487)
+.+....+|+.++..+....
T Consensus 419 ~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 419 MWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998887654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=183.10 Aligned_cols=320 Identities=17% Similarity=0.109 Sum_probs=220.9
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC-chhHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN-RGFWMVI 129 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~-r~~~~~~ 129 (487)
+..+++|.+ |+|+|..+++|.+++..+++++++..++++++++|.+||+|.+.. .+..++++|.+|+++ |++++|+
T Consensus 121 lvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi 200 (464)
T KOG3764|consen 121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI 200 (464)
T ss_pred HhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence 445677888 999999999999999999999999999999999999999999999 778899999998765 7999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
...+.++|.++||++++.+.+..|.+.+|++.+++.++...+.+++-|..+ .++++.
T Consensus 201 algfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~~~~~------------------ 257 (464)
T KOG3764|consen 201 ALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MDPDST------------------ 257 (464)
T ss_pred HHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cCcccc------------------
Confidence 999999999999999999999999999999999999998776666543321 000000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
.+.++++.++++++.... ...
T Consensus 258 ---------------------------------------------------------~~~~~~~~Ll~dP~I~~~--aga 278 (464)
T KOG3764|consen 258 ---------------------------------------------------------EQGTPMWSLLMDPYILLI--AGA 278 (464)
T ss_pred ---------------------------------------------------------ccCccHHHHHhCchHhhh--hcc
Confidence 000156666665443221 111
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccCCcccc-ccchhhhhhhhcchhHHHHHHHHHhhhh--hhHHHHHHHHH
Q 011365 290 VFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD-INYGDVFITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFC 366 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~ 366 (487)
..+++. .+.+.-|.+...+. +....+. ..+.......+...++..+.|.+.||++ |......+.+.
T Consensus 279 i~~~n~----~lafLePtlslwm~-------e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~ 347 (464)
T KOG3764|consen 279 ITFSNS----SLAFLEPTLSLWML-------ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT 347 (464)
T ss_pred hhhccc----hHHHhCcccHHHHH-------HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence 222221 12222222110000 1112223 3467777778888999999999999999 54444445555
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC---Cc---chhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP---TS---VRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~---~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..++.....+.++...+++-.+..+++.+...........+++. .+ ..|..+++......+|.++||.++|.+.
T Consensus 348 ~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv 427 (464)
T KOG3764|consen 348 VGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV 427 (464)
T ss_pred HHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence 55555555555555444444444444433333332222222222 22 5688999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHheeec
Q 011365 441 HGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
+..|..+...+.++..++..-++.++
T Consensus 428 ~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 428 EAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877777777666555444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=165.90 Aligned_cols=355 Identities=17% Similarity=0.150 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHhcccccccccCccccch-hcccccccchhhhHHH----------HHHHH--HhhhhHHHHHHHHHHHHH
Q 011365 14 SVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESDQSSFSFS----------LFGRL--LLSFRKGFLITAIVTSAA 80 (487)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~G~~--r~Grr~~l~~~~~~~~~~ 80 (487)
.+...+......+.-......+-..+.+ .+++.+.+..+.+... +...+ |+|.++.+..++++.++|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444555554334444555444444 4888888888775532 12222 899999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh-hhHHHH
Q 011365 81 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLL 158 (487)
Q Consensus 81 ~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~-~w~~~f 158 (487)
.++-... +.+.++.+-.+.|.|.+.. ...+.++-+.+|+ +-+..+|++....++|..+++.+...+.++. +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 7888899999999999998 6667888888865 6799999999999999999999999988776 799999
Q ss_pred HHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCccc
Q 011365 159 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 238 (487)
Q Consensus 159 ~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (487)
.+-+.++++.++.|+... .+. +....+.+
T Consensus 169 ~~WAl~allAl~~WlPq~--~r~----~~~~~~~~--------------------------------------------- 197 (395)
T COG2807 169 GFWALLALLALLIWLPQA--LRE----QAASIATK--------------------------------------------- 197 (395)
T ss_pred HHHHHHHHHHHHHHhhhc--ccc----cccccccc---------------------------------------------
Confidence 999999999877764321 110 00000000
Q ss_pred ccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Q 011365 239 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSN 318 (487)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (487)
..+-..++++ +..+.+.+.+..+...+|....|+|.+..+.|
T Consensus 198 ------------------------------~~~~~~vw~~---~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G----- 239 (395)
T COG2807 198 ------------------------------LVSVRKVWRS---PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG----- 239 (395)
T ss_pred ------------------------------cccccccccC---chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----
Confidence 0011234444 34455666777788999999999999998877
Q ss_pred cccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhh
Q 011365 319 ELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 397 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
.+..+++...++..+..++.++....+.+|. ++|+.......++.++.+.+.+.+... .+...++.|++.++.
T Consensus 240 -----~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~-~~lw~~llG~G~G~~ 313 (395)
T COG2807 240 -----LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL-PILWALLLGLGQGGA 313 (395)
T ss_pred -----CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhCccchH
Confidence 9999999999999999999999999999975 466666666667777766665543322 222268889999999
Q ss_pred hHHHhhhcccccCC-cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHheee
Q 011365 398 FTVVYVYAPEIYPT-SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI-LFELVILLSGISVLL 465 (487)
Q Consensus 398 ~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~-~~~~~~~~~~~~~~~ 465 (487)
++.....+....++ +..++-.|+.+.++++-...+|++.|++.|.+|.+...+ .+..+.++..+.-+.
T Consensus 314 F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 314 FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99998888887654 456777888999999999999999999999998665544 444444444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=179.36 Aligned_cols=307 Identities=11% Similarity=-0.060 Sum_probs=196.5
Q ss_pred HhhhhHHHHHHHHHH-HHHHHHHh---hchh-HHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 011365 63 LLSFRKGFLITAIVT-SAAGLLSA---FAPN-YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV 136 (487)
Q Consensus 63 r~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 136 (487)
|+||||.+++...+. ++.....+ ...+ ...++..-++.++..+.. +....+..|..++++++...+....+..+
T Consensus 65 ~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~l 144 (390)
T TIGR02718 65 RLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMI 144 (390)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHH
Confidence 789999976655332 22222222 2222 333444455555666666 66778888998888889999999999999
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchh
Q 011365 137 GTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 216 (487)
Q Consensus 137 G~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
|.++++...+++.+..|||..|++.++..++..+..++++|+++. +++.++ +
T Consensus 145 G~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~--~----------------------- 196 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL--A----------------------- 196 (390)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--h-----------------------
Confidence 999999999999999999999999998887765555555443210 000000 0
Q ss_pred hhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHH
Q 011365 217 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF 296 (487)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (487)
...+++++++++..+......+... .
T Consensus 197 ---------------------------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~---~ 222 (390)
T TIGR02718 197 ---------------------------------------------------RRASLFRFFRRPLAWSLLALALLSA---M 222 (390)
T ss_pred ---------------------------------------------------hHHHHHHHHcCcCHHHHHHHHHHHH---H
Confidence 0004455565544443333333322 2
Q ss_pred HHHhhhhhhhhhhccccccccccccCCccccccchhhhhhh-hcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh
Q 011365 297 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL 375 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 375 (487)
.......+.+.+.++.| .+.+..+....... ...+++.++.|++.||+|+|+.+..+..+.++..+...
T Consensus 223 ~~~~~~~~~~~~l~~~G----------~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 292 (390)
T TIGR02718 223 TAVSGFGLSKLYLVDAG----------WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWF 292 (390)
T ss_pred HHHHHHHHhhHHHHhcC----------CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22223334455554444 66666666666555 45667889999999999999988877665533222221
Q ss_pred c-c-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCC-cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 376 F-Q-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPT-SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 376 ~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
. . .+.........+.+++.+...+...+...+..++ +.+++.+++.+...++|..++|.+.|.+.|..|+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~ 372 (390)
T TIGR02718 293 AQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGG 372 (390)
T ss_pred HHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 1 1 1111222222333455566667777777677665 8899999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHH
Q 011365 449 LILFELVILLSGI 461 (487)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (487)
+...+++.+++..
T Consensus 373 f~~~~~~~l~a~~ 385 (390)
T TIGR02718 373 FLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=184.68 Aligned_cols=365 Identities=12% Similarity=0.004 Sum_probs=218.9
Q ss_pred HHHHHHH--H-hhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC---chhHHH
Q 011365 56 FSLFGRL--L-LSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN---RGFWMV 128 (487)
Q Consensus 56 ~~~~G~~--r-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~---r~~~~~ 128 (487)
..+.|.+ | +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|.. +...++++|++|+++ |+++++
T Consensus 65 ~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~ 144 (475)
T TIGR00924 65 TSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFT 144 (475)
T ss_pred HhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceeh
Confidence 4445655 7 89999999999999999999999999999999999999999998 888899999998764 888999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCC----CchhhhhcCChHHHHHHHHHH------
Q 011365 129 IFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE----SPRYLCLKGRTAEARHVLEKI------ 198 (487)
Q Consensus 129 ~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e----~p~~~~~~~~~~~~~~~~~~~------ 198 (487)
+...+.++|.+++|.+++++.+.+||+..|.+.++..++..+.+.+.++ .|+.. .+.+.++.+......
T Consensus 145 ~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 223 (475)
T TIGR00924 145 LFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAAL 223 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999998889999999987665555444444332 22100 000001000000000
Q ss_pred ----Hh--HhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHH
Q 011365 199 ----AK--INGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL 272 (487)
Q Consensus 199 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (487)
.. ..... . ....-..... .. ......+.. .++ ..
T Consensus 224 ~~~~~~~~~~~~~-----~--~~~~~~~~~~-----------~~-~~~~~~~~~---------------~~~------~~ 263 (475)
T TIGR00924 224 ALVFFCAWLMHHV-----V--IANILLMTVT-----------LA-VIIFFFRLA---------------FKP------RL 263 (475)
T ss_pred HHHHHHHHHHhcc-----H--HHHHHHHHHH-----------HH-HHHHHHHHH---------------Hhc------cC
Confidence 00 00000 0 0000000000 00 000000000 000 00
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-cccccccccCCccccccchhhhhhhhcchhHHHHHHHHH
Q 011365 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ-NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMV 351 (487)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 351 (487)
...-+++. ...+.+++........+.......+.+..+. +. +.....-..+...++..+..++..++..++.
T Consensus 264 ~~~~~~~~-~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~------~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~ 336 (475)
T TIGR00924 264 DAVARNKM-YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHH------EMLGMSVPVIWFQSLNPFWVVVGSPVLAMIW 336 (475)
T ss_pred CHHHHhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc------cccceEECHHHHHhhhHHHHHHHHHHHHHHH
Confidence 00001111 2222233333333333333333233332111 10 0000011124556666666666655554444
Q ss_pred hhhhhh-----HH--HHHHHHHHHHHHHhHhc---------cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 352 DRLGRK-----LS--MSSMFFCCCIFLVPLLF---------QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 352 dr~g~r-----~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
.|++|| .. +.++.++.+++++.+.+ ..+.+..+...++.+++.....|...+++.+..|++.||
T Consensus 337 ~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g 416 (475)
T TIGR00924 337 TRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG 416 (475)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 444432 22 35677777766666542 345666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
+.+|+......+|..+++.+.....+..++...+...+++.++..++.++..|
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887777666666666666666666555554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=169.51 Aligned_cols=278 Identities=13% Similarity=0.090 Sum_probs=200.2
Q ss_pred hchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc--------------
Q 011365 86 FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------------- 150 (487)
Q Consensus 86 ~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-------------- 150 (487)
...+|+.++++-++.|.|.+.. +..++++++..+++++++.+++.+.+.++|.+++|.+++.+..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999999 9999999999999999999999999999999999999998763
Q ss_pred --hhhhHHHHHHhHHHHHHHHHHHHhc--CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhccc
Q 011365 151 --RLGWRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLS 226 (487)
Q Consensus 151 --~~~w~~~f~~~~~~~~i~~~~~~~l--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (487)
..+|+.+|++.+...++..+.+.+. ||.++ ++.++..+ +
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~~~---~----------------------------- 128 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARVSS---G----------------------------- 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccccc---c-----------------------------
Confidence 1479999997766655554444443 33211 00000000 0
Q ss_pred CCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011365 227 SSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 306 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (487)
+.. ..+..+++ +..++..+..+.+.....+...|.+
T Consensus 129 -----------------------------------~~~------~~~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 129 -----------------------------------DTT------QKTSAFQF---THLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred -----------------------------------ccc------chhhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00112222 3333444555555556667777888
Q ss_pred hhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHH
Q 011365 307 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGL 386 (487)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (487)
.|+.+.. ..+.+....+...+....+.++|+++.+++.||+++|+.+..+..+.+++.++....++. .....
T Consensus 165 ~yl~~~~-------~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~-~~~~~ 236 (310)
T TIGR01272 165 NFLSDPH-------ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGY-VAMWF 236 (310)
T ss_pred HHHHhcc-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHH
Confidence 8875321 123666677888889999999999999999999999998888877777766555444333 33445
Q ss_pred HHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHH
Q 011365 387 LFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFEL 454 (487)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 454 (487)
..+.+++.+..+|...+...+..|++ .+++.++. ..+.+|+++.|.+.|.+.|..|....+++...
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 66788999999999999999988764 56777775 56779999999999999999887766654333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-19 Score=168.91 Aligned_cols=336 Identities=14% Similarity=0.138 Sum_probs=223.1
Q ss_pred hHHHHHHHH--Hhhh-hHHHHHHHHHHHHHHHHHhhc-h-hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCc----
Q 011365 54 FSFSLFGRL--LLSF-RKGFLITAIVTSAAGLLSAFA-P-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR---- 123 (487)
Q Consensus 54 ~~~~~~G~~--r~Gr-r~~l~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r---- 123 (487)
+..+++|.+ +-|+ |+.+.+...+.++++.++.+. + +++...+..++.-++.+.. ....+++.|..+++++
T Consensus 85 ll~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~ 164 (477)
T PF11700_consen 85 LLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAA 164 (477)
T ss_pred HHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhh
Confidence 456777777 4454 555555666666677766664 3 3444455555665666666 5556899999999888
Q ss_pred ----------------------hhHHHHHHHHHHHhHHHHHHHHHHhhc--------hhhhHHHHHHhHHHHHHH-HHHH
Q 011365 124 ----------------------GFWMVIFQTFWTVGTILEAGIAWLVMP--------RLGWRWLLGLSAFPSSLL-LLLY 172 (487)
Q Consensus 124 ----------------------~~~~~~~~~~~~lG~~i~~~~~~~l~~--------~~~w~~~f~~~~~~~~i~-~~~~ 172 (487)
++..+.-.....+|.++.-.+...+.. ..+.|..+.+.++..++. +...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~ 244 (477)
T PF11700_consen 165 REPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLF 244 (477)
T ss_pred hhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887776655431 234688888888877666 6667
Q ss_pred HhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhc
Q 011365 173 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM 252 (487)
Q Consensus 173 ~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (487)
+++||.|+....++.........+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~~~l~----------------------------------------------------- 271 (477)
T PF11700_consen 245 LWLPDRPGPRPLPSGSSYLRFGFKRLW----------------------------------------------------- 271 (477)
T ss_pred HhCCCCCCCCCCCcchhHHHHHHHHHH-----------------------------------------------------
Confidence 778887652111111111111122211
Q ss_pred ccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccch
Q 011365 253 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYG 331 (487)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 331 (487)
..++++.+. +.....++.++...-....+..+...+.. +.+ ++..+...
T Consensus 272 -----------------~t~k~~~~~---~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg----------~s~~~l~~ 321 (477)
T PF11700_consen 272 -----------------RTFKEIRKL---RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLG----------MSTTQLIV 321 (477)
T ss_pred -----------------HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------cCHHHHHH
Confidence 134444433 33333334444333333344444444433 222 66666677
Q ss_pred hhhhhhhcchhHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhHhc--------cCCcchHHHHHHHHHHHHHhhhHHH
Q 011365 332 DVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLF--------QQPKGLTTGLLFGARICITVTFTVV 401 (487)
Q Consensus 332 ~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (487)
...+..+..++|+++.+++.||+|.| +++..+.++..+..+.-.+ ..+.+.+.++.++.|++.+..++..
T Consensus 322 ~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~s 401 (477)
T PF11700_consen 322 FGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSAS 401 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHH
Confidence 77788899999999999999999988 7777666655333332222 4566778888899999999999999
Q ss_pred hhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 402 YVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT-AALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 402 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
.++.+|+.|+++.+..+|++...+...+.+||.+.|.+.+.+|.. ..+....++.+++.++. ...+.+|.+
T Consensus 402 Rs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 402 RSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 999999999999999999999999999999999999999999844 44444444444444444 444444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=170.48 Aligned_cols=360 Identities=13% Similarity=0.094 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHhcccccccccCccccch-hcccccccc-hhhhH----------HHHHHHH--HhhhhHHHHHHHHHHHH
Q 011365 14 SVLLICFAMIFCDIAFDVPELSWNTTTL-LNLHFSESD-QSSFS----------FSLFGRL--LLSFRKGFLITAIVTSA 79 (487)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~~~ 79 (487)
..+++|...++.+ ..+..++..+.+ ++++++..+ .+.+. ..+.|.+ |+|.|+++.++.+.+++
T Consensus 28 ~~~~lC~fGF~~e---~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQ---FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHH---hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3455677777765 233333333333 366666666 33322 2233444 99999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHH
Q 011365 80 AGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~ 159 (487)
..++.++++++..+.+.|++.|++.|...+...++..|+|+++|+++.++...+..+|.+++++++++ ...+|||..+.
T Consensus 105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~ 183 (511)
T TIGR00806 105 VWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence 99999999999999999999999999988667999999999999999999999999999999999999 45679998664
Q ss_pred Hh---HHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCc
Q 011365 160 LS---AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 236 (487)
Q Consensus 160 ~~---~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (487)
+. .....++++..+++|..++.+.-+++++.... ...+.+...++ +. .
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~----~~~~~~~~~~~------------------------~~-~ 234 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGA----LPCELDQMVPG------------------------PG-G 234 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccc----cccccccCCCC------------------------Cc-c
Confidence 43 33444556777888865553322221110000 00000000000 00 0
Q ss_pred ccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 011365 237 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (487)
+..... +......-..-+..+++..+++. .+.-.+-+......++.+..|...+.++..
T Consensus 235 ----~~~~~~-----------~~~~~~~~~~l~~~~~~~y~n~~---vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~--- 293 (511)
T TIGR00806 235 ----KLEDYL-----------GTCRDSFLVRMLSELVTIYRNPQ---LLLWSLWWVFNSAGYYLITYYVHTLWGTLD--- 293 (511)
T ss_pred ----ccchhh-----------hhhhhHHHHHHHHHHHHHhcCcc---hhhhhHHHHHHhhHHHHHHHHHHHHHHHcC---
Confidence 000000 00000000111223444444422 111222223344444445555544443221
Q ss_pred cccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHH
Q 011365 317 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI 394 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (487)
. ..+...+..-.+..+.+.+..+..|++-.++.+- ..+.+..++.+..++++...++.|+..+..++++..+
T Consensus 294 ----~--~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y 367 (511)
T TIGR00806 294 ----E--SLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIY 367 (511)
T ss_pred ----C--CccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Confidence 0 1112446667777777888889999986666442 3344455566666777778888888888888888888
Q ss_pred HhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH
Q 011365 395 TVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP 433 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (487)
....++...-+++....+..|..+|+.+++.-+-..+-.
T Consensus 368 ~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 368 QFLVPIATFQIASSLSKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred HHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence 888888888888888888789999988887665554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=186.70 Aligned_cols=323 Identities=12% Similarity=0.101 Sum_probs=208.8
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch-------------------------------------------
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP------------------------------------------- 88 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 88 (487)
+...+.|++ |+|||+.+.++.++++++.+++++.+
T Consensus 83 ~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 162 (633)
T TIGR00805 83 LLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSEC 162 (633)
T ss_pred HHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccc
Confidence 334555666 99999999999999999999988763
Q ss_pred --------hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh-------
Q 011365 89 --------NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL------- 152 (487)
Q Consensus 89 --------~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~------- 152 (487)
.+..++++|+++|+|.+.. +...+++.|++|+++|++++++...+..+|.++|+++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~ 242 (633)
T TIGR00805 163 QKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVN 242 (633)
T ss_pred ccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCC
Confidence 2556788999999999998 888899999999999999999999999999999999999887532
Q ss_pred ---------------hhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhh
Q 011365 153 ---------------GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 217 (487)
Q Consensus 153 ---------------~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+|+..|++.+++.++..+.++++|++.+....+.+.+..++ + ..+..+
T Consensus 243 ~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~---~--~~~~~~------------ 305 (633)
T TIGR00805 243 TEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET---E--KLEKSE------------ 305 (633)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh---h--cccccc------------
Confidence 38888999888888776666667664321000000000000 0 000000
Q ss_pred hhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 011365 218 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS 297 (487)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
++. .. + ...........++.+++++ .++...+..+.....
T Consensus 306 ------------~~~---~~---------------------~-~~~~~~~~~~~~~~Ll~n~---~f~~~~l~~~~~~~~ 345 (633)
T TIGR00805 306 ------------DKS---RK---------------------K-NSDITKDFPKIIKRLLCNP---IYMLVILAQVIDSLA 345 (633)
T ss_pred ------------ccc---ch---------------------h-hhhhHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHH
Confidence 000 00 0 0000001122566777774 444455555566667
Q ss_pred HHhhhhhhhhhhccccccccccccCCccccccchhhhhhhh-cchhHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhH
Q 011365 298 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF-AEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLVPL 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~ 374 (487)
++++..|.|.++++. .+.+...++.......+ +.++|.+++|+++||++ .|+.+..+.++..++.+..
T Consensus 346 ~~~~~~~lP~yl~~~---------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 416 (633)
T TIGR00805 346 FNGYITFLPKYLENQ---------YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLC 416 (633)
T ss_pred HHHHHHHHHHHHHHH---------cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 777788888888542 23666666666655554 56789999999999987 4455555555444442221
Q ss_pred h----c-----------------------c----------CC--------------------------------------
Q 011365 375 L----F-----------------------Q----------QP-------------------------------------- 379 (487)
Q Consensus 375 ~----~-----------------------~----------~~-------------------------------------- 379 (487)
. . . ..
T Consensus 417 ~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsC 496 (633)
T TIGR00805 417 SPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSC 496 (633)
T ss_pred HHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceeccccc
Confidence 1 0 0 00
Q ss_pred ---------------------cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHHHHHH
Q 011365 380 ---------------------KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVAV 437 (487)
Q Consensus 380 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g 437 (487)
...+++..++..+............+-..+|+++|+.++|+...+.+ +|.+-+|.++|
T Consensus 497 i~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG 576 (633)
T TIGR00805 497 VQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFG 576 (633)
T ss_pred ccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHh
Confidence 00011111111222222234445566778999999999999998877 78899999999
Q ss_pred HHHhh
Q 011365 438 ALVHG 442 (487)
Q Consensus 438 ~l~~~ 442 (487)
++.|.
T Consensus 577 ~~iD~ 581 (633)
T TIGR00805 577 LLIDV 581 (633)
T ss_pred hhhhc
Confidence 99984
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=171.42 Aligned_cols=351 Identities=13% Similarity=0.089 Sum_probs=216.7
Q ss_pred hhhHHHHHHHH------HhhhhHHHHHH-HHHHHHHHHHHhhchhHH-----------------HHHHHHHHHhhhccch
Q 011365 52 SSFSFSLFGRL------LLSFRKGFLIT-AIVTSAAGLLSAFAPNYY-----------------LLLFFRCLVGLGLGGG 107 (487)
Q Consensus 52 ~~~~~~~~G~~------r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~ 107 (487)
+.+..+++|.+ |+||||.++++ ....+++.++++++++.. .++++-.+..++....
T Consensus 52 ~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~ 131 (477)
T TIGR01301 52 GLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNML 131 (477)
T ss_pred HHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666776 69999999884 666677777887776643 2233333444566666
Q ss_pred -HHHHHHHHhhcCCCCc--hhHHHHHHHHHHHhHHHHHHHHHHh--hch-------------hhhHHHHHHhHHHHHHH-
Q 011365 108 -PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGTILEAGIAWLV--MPR-------------LGWRWLLGLSAFPSSLL- 168 (487)
Q Consensus 108 -~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~i~~~~~~~l--~~~-------------~~w~~~f~~~~~~~~i~- 168 (487)
++..+++.|.+|+++| +.+.++.+...++|.++++.++++. .+. .+.|..|++.++..++.
T Consensus 132 ~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~ 211 (477)
T TIGR01301 132 QGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILT 211 (477)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 6677899999998865 6899999999999999999998875 211 16788999988877777
Q ss_pred HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhh
Q 011365 169 LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISE 248 (487)
Q Consensus 169 ~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (487)
++..+..+|.|.... ++.++ + +.++. ++. +
T Consensus 212 l~t~~~v~E~~~~~~--~~~~~--~---~~~~~-----------------------------~~~-----------~--- 241 (477)
T TIGR01301 212 YIALSAVKENPLIGS--DDFIN--S---EAAPP-----------------------------SKH-----------G--- 241 (477)
T ss_pred HHHeeeeeccCCCcc--ccchh--h---hcccc-----------------------------ccc-----------c---
Confidence 555666788663110 00000 0 00000 000 0
Q ss_pred hhhcccccchhhhhccccchhhHHHHhhCh--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCcc
Q 011365 249 AKEMKSEDSTSTLANSNMGGITALLILLSP--ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKS 325 (487)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 325 (487)
....++++++. ..-+....++...+..-+.++.+..|...+.. +.....+.. ...+.
T Consensus 242 -------------------~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~ 301 (477)
T TIGR01301 242 -------------------EEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYD 301 (477)
T ss_pred -------------------hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHH
Confidence 00012222211 01122333444444444444444444443332 111000000 00010
Q ss_pred cc--ccchhhhhhhhcchhHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHhHhccCC---------------------cc
Q 011365 326 RD--INYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMFFCCCIFLVPLLFQQP---------------------KG 381 (487)
Q Consensus 326 ~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 381 (487)
.. ...+.....++...+.+++..++.+|+|+ |....++.++.++++....+..+ .+
T Consensus 302 ~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (477)
T TIGR01301 302 DGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKA 381 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHH
Confidence 00 01234445555556777788899999985 66668887777777666653221 14
Q ss_pred hHHHHHHHHHHHHHhhhHHHhhhcccccCC--cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccc--hhHHHHHHHHHH
Q 011365 382 LTTGLLFGARICITVTFTVVYVYAPEIYPT--SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQ--TAALILFELVIL 457 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~--~~~~~~~~~~~~ 457 (487)
...+...+.|+..+..+.+.++++++..|+ +..|..+|+.|.+..+.+++.....|.+.+..|. ...+.+.++.++
T Consensus 382 ~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~ 461 (477)
T TIGR01301 382 SALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAF 461 (477)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHH
Confidence 556667788999999999999999999994 5569999999999999999999999987776663 344555666677
Q ss_pred HHHHheeeccccCCC
Q 011365 458 LSGISVLLFPFETTG 472 (487)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (487)
++++..++..|+.+.
T Consensus 462 ~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 462 VSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHhCCCCCC
Confidence 777777777776543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-19 Score=172.95 Aligned_cols=330 Identities=12% Similarity=-0.004 Sum_probs=186.3
Q ss_pred HHHHH--H-hhhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC--chhHHHHH
Q 011365 58 LFGRL--L-LSFRKGFLITAIVTSAAGLLSAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIF 130 (487)
Q Consensus 58 ~~G~~--r-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~~~~ 130 (487)
+.|.+ | +|||+++.++.++.+++.+++++++ +.+.++++|+++|+|.|.. +...+++.|++|+++ |+.++++.
T Consensus 76 ~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~ 155 (500)
T PRK09584 76 IGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY 155 (500)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH
Confidence 45665 8 5999999999999999999998874 5667778899999999988 877889999998654 45688999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH----HhcCCCchhhhhcCChHHHHHHHH------HHHh
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY----SVTPESPRYLCLKGRTAEARHVLE------KIAK 200 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~----~~l~e~p~~~~~~~~~~~~~~~~~------~~~~ 200 (487)
+.+.++|..++|.+++++.+++|||+.|.+.++..++.++.. ..++|.++. ..+++.+....... -...
T Consensus 156 ~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (500)
T PRK09584 156 YMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAI 234 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876555443222 223332110 00000110000000 0000
Q ss_pred Hh-CCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHH--hhC
Q 011365 201 IN-GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI--LLS 277 (487)
Q Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~ 277 (487)
.. ....+ +........ ..... .....++ ..+
T Consensus 235 ~~~~~~~~-----~~~~~~~~~----------------------~~~~~-------------------~~~~~~~~~~~~ 268 (500)
T PRK09584 235 ATWLLHNQ-----EIARMALGV----------------------VALGI-------------------VVIFGKEAFAMK 268 (500)
T ss_pred HHHHHhcc-----hHHHHHHHH----------------------HHHHH-------------------HHHHHHHHhhcC
Confidence 00 00000 000000000 00000 0000000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCcccc-ccchhhhhhhhcchhHHHHH----HHHHh
Q 011365 278 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD-INYGDVFITSFAEFPGLLLA----AAMVD 352 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----g~l~d 352 (487)
+..+++.+..+. .+.....++......+......... .......+.. ......++..+..++..++. +++.+
T Consensus 269 ~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~--~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~ 345 (500)
T PRK09584 269 GAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIR--NVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGD 345 (500)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHH--hccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCc
Confidence 111122222211 1122223333222223222110000 0000001111 12344445554555555555 44444
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhccCC---------cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHH
Q 011365 353 RLGRKLSMSSMFFCCCIFLVPLLFQQP---------KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASS 423 (487)
Q Consensus 353 r~g~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 423 (487)
|.+..+.+.+++++.+++++.+..... .+......++.+++.....|...+++.+..|++.||+.+|+...
T Consensus 346 r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 346 RLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 455556777888888888777654322 34566677888999999999999999999999999999998877
Q ss_pred HHhHhHhHHHHHHH
Q 011365 424 IGRIGGMVCPLVAV 437 (487)
Q Consensus 424 ~~~~g~~~~~~i~g 437 (487)
...+|..++..+.+
T Consensus 426 ~~a~g~~~~g~~~~ 439 (500)
T PRK09584 426 TTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 77677766666654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=162.86 Aligned_cols=331 Identities=17% Similarity=0.171 Sum_probs=214.4
Q ss_pred cchhhhHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCch
Q 011365 49 SDQSSFSFSLFGRL--LL-SFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRG 124 (487)
Q Consensus 49 ~~~~~~~~~~~G~~--r~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~ 124 (487)
.....++.+++|.+ |+ .+||.+.+..++.++........++++.+++..++..+..... |...++..+... +++
T Consensus 47 ~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~ 124 (400)
T PF03825_consen 47 PLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRG 124 (400)
T ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--ccc
Confidence 33445566778887 65 4688888888888887777788889998888888888877766 777777777765 334
Q ss_pred hHHHHHHHHHHHhHHHHHHH-HHHhhchhh---hHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHh
Q 011365 125 FWMVIFQTFWTVGTILEAGI-AWLVMPRLG---WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAK 200 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~-~~~l~~~~~---w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~ 200 (487)
.-.|-.....++|.+++... ++.+....+ ....+++.+...++.....+.+|+.|+....+++.+ +
T Consensus 125 ~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~---~------- 194 (400)
T PF03825_consen 125 KDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVK---K------- 194 (400)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCcc---c-------
Confidence 45666677777777776543 222322222 234556665555555555566787763100000000 0
Q ss_pred HhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHH
Q 011365 201 INGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL 280 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (487)
....+..+++|++.
T Consensus 195 ------------------------------------------------------------------~~~~~~~~llk~~~ 208 (400)
T PF03825_consen 195 ------------------------------------------------------------------LLGLDALKLLKNPR 208 (400)
T ss_pred ------------------------------------------------------------------ccchHHHHHhcCcc
Confidence 00013345666644
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
...+++.... ..........+.+.++++.| +.+.+..+...++..+..++.-...+++.+|+|.++++
T Consensus 209 ~~~Fll~~~l---~~~~~~~~~~f~~~yl~~~g---------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll 276 (400)
T PF03825_consen 209 FLVFLLAAFL---IGISHAAYYTFFSIYLQELG---------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLL 276 (400)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHcc---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4433333332 22222233334455554433 12333446666788888999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcc-CCcchHHHHH----HHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHH-hHhHhHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQ-QPKGLTTGLL----FGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIG-RIGGMVCPL 434 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~ 434 (487)
.++.+..++=..++... ++.+...... .+-|+.++..+.....++.+..|++.|+++.++++... .+|..++..
T Consensus 277 ~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 277 LLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999988887766 4444333333 34788888899999999999999999999999998865 699999999
Q ss_pred HHHHHHhhccchhH------HHHHHHHHHHHHHheeecccc
Q 011365 435 VAVALVHGCHQTAA------LILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 435 i~g~l~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~ 469 (487)
++|++.|..|.... +.+.+++.++..++.+++.||
T Consensus 357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999998875532 333444444444444444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-17 Score=160.04 Aligned_cols=352 Identities=18% Similarity=0.171 Sum_probs=214.2
Q ss_pred hhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHH
Q 011365 52 SSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVI 129 (487)
Q Consensus 52 ~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~ 129 (487)
...+.+++|++ .||||+.++.+.++..+|.++++-++|...++.+..+.|+|.|........++|..|.|.|+...++
T Consensus 91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~ 170 (599)
T PF06609_consen 91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAI 170 (599)
T ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHH
Confidence 44557788888 9999999999999999999999999999999999999999987775556668999999999888877
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHh---------
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAK--------- 200 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~--------- 200 (487)
.....-+...+++.++..+..+.+|||.|++.++...+.++..++.-.+|++...+++....++.++++.-
T Consensus 171 ~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~G 250 (599)
T PF06609_consen 171 ASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAG 250 (599)
T ss_pred HHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHH
Confidence 77666666667788887776677999999999887777644332222222221111111111111222110
Q ss_pred -------HhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhccccc-chhhhhccccchhhHH
Q 011365 201 -------INGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED-STSTLANSNMGGITAL 272 (487)
Q Consensus 201 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 272 (487)
.+-...+.. .=.+..+.. . -.-+-..-.- -........+.+.-+
T Consensus 251 l~LfLlgl~wgG~~~~-------------------~W~Sa~VIa---~-----lviG~~~Lv~F~~wE~~~~~~~Pl~P- 302 (599)
T PF06609_consen 251 LALFLLGLSWGGYPYY-------------------PWKSAHVIA---P-----LVIGFVLLVAFVVWEWFGAPKDPLFP- 302 (599)
T ss_pred HHHHHHHHhccCCCCC-------------------CCCCccchh---h-----HHHHHHHHHHHHHhhhhccCCCCcCC-
Confidence 000000000 000000000 0 0000000000 000000000000001
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHH
Q 011365 273 LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMV 351 (487)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 351 (487)
..+++++ |.+....++.+.....+|....+-|..... .+ .+..+....+......+++..+|.++.|.+.
T Consensus 303 ~~Lf~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~-------~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~ 373 (599)
T PF06609_consen 303 HRLFKDR--RGFAALLVISFISGMNFFSVNILWPQQVVNVFG-------SDPISITEIGWISSPVGFGSCAGAVILGLLF 373 (599)
T ss_pred HHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CCCcccceeehhhhhHHHHHHHHHHHHHHHH
Confidence 2234331 334444555666666667765555554321 11 1111112345666677788888889999999
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHhHhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHh
Q 011365 352 DRLGRK-LSMSSMFFCCCIFLVPLLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIG 428 (487)
Q Consensus 352 dr~g~r-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 428 (487)
.++++- +.++++.+++.+++.++.. .++....+...++.+++.+..........+-..|+++-|++.|+..++..+|
T Consensus 374 ~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~G 453 (599)
T PF06609_consen 374 SKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIG 453 (599)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHh
Confidence 988764 4445666666554444443 3344455667778888888888888888888899999999999999999999
Q ss_pred HhHHHHHHHHHH
Q 011365 429 GMVCPLVAVALV 440 (487)
Q Consensus 429 ~~~~~~i~g~l~ 440 (487)
+.++..+...+.
T Consensus 454 GsIg~aIy~~I~ 465 (599)
T PF06609_consen 454 GSIGYAIYNAIF 465 (599)
T ss_pred hHHHHHHHHHHH
Confidence 999988876655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=166.58 Aligned_cols=302 Identities=13% Similarity=0.060 Sum_probs=190.1
Q ss_pred hhhHHHHHHHH------HhhhhHHH-HHHHHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHHhh
Q 011365 52 SSFSFSLFGRL------LLSFRKGF-LITAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEF 117 (487)
Q Consensus 52 ~~~~~~~~G~~------r~Grr~~l-~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~ 117 (487)
..+..++.|.+ |+||||.. +.+.+..+++.++....|+ +..+++..++.+.+.... .+..++..|+
T Consensus 58 dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~ 137 (444)
T PRK09669 58 DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAI 137 (444)
T ss_pred HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHh
Confidence 33445666776 69996554 4577777777765555543 455666677777766666 5556888898
Q ss_pred c-CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc-------hhhhHHHHHHhHHHHHHHHHHH-HhcCCCchhhhhcCCh
Q 011365 118 I-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGLSAFPSSLLLLLY-SVTPESPRYLCLKGRT 188 (487)
Q Consensus 118 ~-~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-------~~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~~~~~~~~~ 188 (487)
. ++++|++..++...+..+|..+++.+...+.. ..+|+..+.+.+++.++..+.. +..+|.++. +
T Consensus 138 t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-----~- 211 (444)
T PRK09669 138 TNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-----E- 211 (444)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-----C-
Confidence 8 55789999999988888888887765544332 3478888888877776664433 333332110 0
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccch
Q 011365 189 AEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGG 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (487)
++. +...
T Consensus 212 ~~~-------------------------------------------------------------------------~~~~ 218 (444)
T PRK09669 212 VDN-------------------------------------------------------------------------SSSV 218 (444)
T ss_pred CcC-------------------------------------------------------------------------CCCH
Confidence 000 0001
Q ss_pred hhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHH
Q 011365 269 ITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAA 348 (487)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 348 (487)
..+++.+++++.++......+........... ..+++.+..- ...+..........+..+++.++.+
T Consensus 219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~---~~~y~~~~~~----------~~~~~~~~~~~~~~i~~ii~~~~~~ 285 (444)
T PRK09669 219 WKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG---ATLYYVNYVL----------LRPDLATLFLVTGMIAGLFGALLSE 285 (444)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh---hhheeeeeec----------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12667777776655554433322221111111 1222221110 1112223344455566778888999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhHh-c-cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC-------CcchhHHHH
Q 011365 349 AMVDRLGRKLSMSSMFFCCCIFLVPLL-F-QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP-------TSVRTTGVG 419 (487)
Q Consensus 349 ~l~dr~g~r~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g 419 (487)
++.||+|+|+.+..+.++.++..+.+. . ..+.+...+..++.+++.+...+..+++++|..+ .+..|..+|
T Consensus 286 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s 365 (444)
T PRK09669 286 RLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFS 365 (444)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHH
Confidence 999999999998877766554333222 2 2334445666677888888999999999998875 334577889
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 420 VASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 420 ~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
..+++..+|..+++.+.|.+.+..|+
T Consensus 366 ~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 366 TNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999997775
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-18 Score=155.54 Aligned_cols=335 Identities=13% Similarity=0.147 Sum_probs=214.7
Q ss_pred hhhhHHHHHHHH--HhhhhHHHHHHHHHH--HHHH-HHHhhch----hHH-HHHHHHHHHhhhccch-HHHHHHHHhhcC
Q 011365 51 QSSFSFSLFGRL--LLSFRKGFLITAIVT--SAAG-LLSAFAP----NYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIP 119 (487)
Q Consensus 51 ~~~~~~~~~G~~--r~Grr~~l~~~~~~~--~~~~-~~~~~~~----~~~-~l~~~r~l~G~~~g~~-~~~~~~i~~~~~ 119 (487)
...+.++++|.+ |+|.||-++....+. ..+. +...+.| |++ ..+++-+..|+..... ++.-+++.++.
T Consensus 55 ~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s- 133 (412)
T PF01306_consen 55 FALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS- 133 (412)
T ss_dssp HHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-
Confidence 344557788888 999777655433322 2222 2323332 222 2233333344444444 55556666655
Q ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc-CCCchhhhhcCChHHHHHHHHHH
Q 011365 120 APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEKI 198 (487)
Q Consensus 120 ~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l-~e~p~~~~~~~~~~~~~~~~~~~ 198 (487)
++.+.-.|-.....++|.+++..++|.+.+ .+-+..|++....+++..++.... |+.++.....+..+ +
T Consensus 134 -r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-~------- 203 (412)
T PF01306_consen 134 -RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-A------- 203 (412)
T ss_dssp -HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-S-------
T ss_pred -HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-c-------
Confidence 344566788888999999999999999876 466778887776666654444333 33332110000000 0
Q ss_pred HhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh
Q 011365 199 AKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 278 (487)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (487)
+++....++..++++.
T Consensus 204 ----------------------------------------------------------------~~~~~~~~~~~~l~k~ 219 (412)
T PF01306_consen 204 ----------------------------------------------------------------KKDKVSLKDVLSLFKM 219 (412)
T ss_dssp ----------------------------------------------------------------------HHHHHHHTTS
T ss_pred ----------------------------------------------------------------CCCCCcHHHHHHHhcc
Confidence 0000011255667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh
Q 011365 279 ELIKSTLLLWLVFFGNAFSYYGL----VLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL 354 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 354 (487)
+..+.+.+ ...+....|+.. ..|...+.++.+ .+....+...++.-+..++...+..++.+|+
T Consensus 220 ~~fw~~~l---~v~g~~~~Y~vfdqqf~~y~~~~f~~~~----------~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri 286 (412)
T PF01306_consen 220 RNFWFFVL---FVIGVAAIYDVFDQQFPIYFASFFQSAG----------QGNQMYGYLWSVQVFLEALMMFFSPWLINRI 286 (412)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTSSSHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcccc----------cChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55444333 222222333332 223333332221 3333347778888888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHH-HHHHhHhHhHHH
Q 011365 355 GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVA-SSIGRIGGMVCP 433 (487)
Q Consensus 355 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~ 433 (487)
|.|+.++++..++++=.+...+.++++.....-.+-++-.........-++.+.+|++..++.+.+. +...++|..+.+
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s 366 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS 366 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred ChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888889999999999999999999999999999999986 566789999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 434 LVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 434 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
.+.|.++|+.|...++++++++.+...++..+..+++++.
T Consensus 367 ~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 367 PLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred hhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 9999999999988899998888887777777776554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=169.12 Aligned_cols=307 Identities=11% Similarity=0.010 Sum_probs=190.3
Q ss_pred hhhHHHHHHHH------Hhhh-hHHHHHHHHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHHhh
Q 011365 52 SSFSFSLFGRL------LLSF-RKGFLITAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEF 117 (487)
Q Consensus 52 ~~~~~~~~G~~------r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~ 117 (487)
..+..+++|.+ |+|| |+.++++.+..+++..++...++ +..+++..++.+++.... .+..++..|.
T Consensus 55 dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~l 134 (473)
T PRK10429 55 DAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTL 134 (473)
T ss_pred HHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHh
Confidence 44556677877 7899 55555677777777666544332 334556667777777777 6666888999
Q ss_pred c-CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc-------hhhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcCCh
Q 011365 118 I-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKGRT 188 (487)
Q Consensus 118 ~-~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-------~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~~~ 188 (487)
. ++++|.+..++...+.++|..+.+.+...+.. ..+|+....+.+++.++.. +.++..+|.+.... .+.
T Consensus 135 t~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~--~~~ 212 (473)
T PRK10429 135 TLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDN--QVS 212 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccc--ccc
Confidence 8 68899999999888888876666555443321 2357777776666666553 33333555431000 000
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccch
Q 011365 189 AEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGG 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (487)
++ +.+...
T Consensus 213 ~~------------------------------------------------------------------------~~~~~~ 220 (473)
T PRK10429 213 AE------------------------------------------------------------------------GSHLTL 220 (473)
T ss_pred cc------------------------------------------------------------------------ccCCCH
Confidence 00 000001
Q ss_pred hhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHH
Q 011365 269 ITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAA 348 (487)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 348 (487)
...++.+++++.++.++.. .+......+....+.+++.+... .+....+....+..++.+++.++.+
T Consensus 221 ~~~~~~~~~n~~~~~ll~~---~~~~~~~~~~~~~~~~y~~~y~~----------~~~~~~~~~~~~~~i~~ii~~~~~~ 287 (473)
T PRK10429 221 KDIVALIYKNDQLSCLLGM---ALAYNIASNIINGFAIYYFTYVI----------GDADLFPYYLSYAGAANLVTLILFP 287 (473)
T ss_pred HHHHHHHhcCHHHHHHHHH---HHHHHHHHHHHhhheeeEEEEEC----------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1155556666544433332 33233333333333344432211 2222224455556677888999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhHhc-----cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC-------CcchhH
Q 011365 349 AMVDRLGRKLSMSSMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP-------TSVRTT 416 (487)
Q Consensus 349 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~ 416 (487)
++.||+|+|+.+..+..+.+++.+.+.. ..+.+...+..++.+++.+...+..+++++|..+ .+..|.
T Consensus 288 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 288 RLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 9999999999988777665554443321 2233444555566778888888888999999865 344567
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 417 GVGVASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 417 ~~g~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
.+|..+++..++..+++.+.|++.+..|+
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999987765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=146.54 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=188.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT 138 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 138 (487)
|+|-|..-++-++...+|.++++. .+.+|.++++|++.|+|.-.. .+-+.+...|+..|+.+.++|+.....-+|.
T Consensus 106 ~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gs 185 (459)
T KOG4686|consen 106 RFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGS 185 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhc
Confidence 888888878877777888877654 578999999999999987777 4556899999999999999999999999998
Q ss_pred HHHHHHHHHhhchhhhHH------H---HHHhHHH-HHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCC
Q 011365 139 ILEAGIAWLVMPRLGWRW------L---LGLSAFP-SSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS 208 (487)
Q Consensus 139 ~i~~~~~~~l~~~~~w~~------~---f~~~~~~-~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (487)
.+--.+.+++.+..+--. . ....... +...++...-+- + .++.+++.+.+ .++. .
T Consensus 186 tvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg----~-----~D~rAerilh~---e~g~-~-- 250 (459)
T KOG4686|consen 186 TVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG----L-----SDDRAERILHL---EEGF-L-- 250 (459)
T ss_pred eeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh----h-----hhhHHHHHHhh---hcCc-c--
Confidence 877666667655432100 0 0000111 100111110000 0 01112221111 0000 0
Q ss_pred CCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHH
Q 011365 209 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW 288 (487)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (487)
.|.. .+.+. +.+.+.++.+.
T Consensus 251 ---------------------Ge~p-------------------------------------kLtdv--~~f~ppfw~~~ 270 (459)
T KOG4686|consen 251 ---------------------GEEP-------------------------------------KLTDV--NTFYPPFWVLV 270 (459)
T ss_pred ---------------------cCCc-------------------------------------ccccc--cccCccHHHHH
Confidence 0000 00011 11123344444
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
.+.+++....+.+...-|.+.++ ..+.++..++...+.......+.+++.|.++||.|++...+.+..+..
T Consensus 271 iicv~yyva~fPFi~lg~~fF~~---------rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 271 IICVLYYVAWFPFITLGPMFFQK---------RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT 341 (459)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---------hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence 44444444444444444555433 223777777777777777778888999999999999977665544443
Q ss_pred HH-HHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 369 IF-LVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 369 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
+. -..+.+ +.+.....+.+.|+.+...-...|..++.++|+++.|+++|..+.+.++|-.+.|.+.|.+.|.-|.+
T Consensus 342 l~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 342 LLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 32 222222 22334556677777777777778888999999999999999999999999999999999999987743
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=161.18 Aligned_cols=329 Identities=12% Similarity=0.033 Sum_probs=208.0
Q ss_pred cccccccchhhh---------HHHHHHHH--Hhh-----hhHHHHHHHHHH-HHHHHHHhhchhHHHHH-HHHHHHhhhc
Q 011365 43 NLHFSESDQSSF---------SFSLFGRL--LLS-----FRKGFLITAIVT-SAAGLLSAFAPNYYLLL-FFRCLVGLGL 104 (487)
Q Consensus 43 ~~~~~~~~~~~~---------~~~~~G~~--r~G-----rr~~l~~~~~~~-~~~~~~~~~~~~~~~l~-~~r~l~G~~~ 104 (487)
+++.+..+.+.+ .-+++|.+ |++ ||+.++++.++. +++....+..++..... +..++.+++.
T Consensus 55 ~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 55 DLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 467776666332 23456666 776 677777777766 34444444445644444 4789999999
Q ss_pred cch-HHHHHHHHhhcCCCCchhHH---HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCch
Q 011365 105 GGG-PVLASWFLEFIPAPNRGFWM---VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPR 180 (487)
Q Consensus 105 g~~-~~~~~~i~~~~~~~~r~~~~---~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~ 180 (487)
+.. .+..++..|..+ +++.... ++.....++|.++++.+++.+.+.++||..|++.+++.++..+...+++|++.
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~ 213 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRA 213 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 998 777899999998 5544433 33444455899999999999999899999999998888777666677787541
Q ss_pred hhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhh
Q 011365 181 YLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTST 260 (487)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (487)
....+.+.++ ......... ...
T Consensus 214 ~~~~~~~~~~-~~~~~~~~~-------------------------------------------~~~-------------- 235 (468)
T TIGR00788 214 FVRPRIGTYL-EMNMALLTL-------------------------------------------GVL-------------- 235 (468)
T ss_pred cccccccccc-hhhhhhhhh-------------------------------------------hHH--------------
Confidence 0000000000 000000000 000
Q ss_pred hhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcc
Q 011365 261 LANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAE 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (487)
+.......+.+..++++..+..++..+.. +... .+.. .+.+..+.. ..+.++...+......+++.
T Consensus 236 --~~~~~~~~~l~~~l~~~~i~~~l~fifl~--~~~~-~~~~--~~~f~~~~~-------~lG~s~~~~G~~~~~~~v~~ 301 (468)
T TIGR00788 236 --ANVKVQILGLRGAIQLLEIAKPLIFIFLS--YANL-PGAS--GSVFCATTQ-------CLPGGPSFSGMSKVVGNLGS 301 (468)
T ss_pred --HHHHHHHHHHHHHHhcHHHHHHHHHHHHH--Hhhc-CCCC--ceeEEEEcc-------cCCCCcchhhhHHHHHHHHH
Confidence 00000011333344443333322222220 1110 0000 000000000 23477777788888889999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc----------cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccC
Q 011365 341 FPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF----------QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYP 410 (487)
Q Consensus 341 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 410 (487)
+++..+.+++.+|++.|+++.++.++.+++.+.... .++.+.......+.+++.+..+.....++++..|
T Consensus 302 i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p 381 (468)
T TIGR00788 302 LCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCP 381 (468)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCC
Confidence 999999999999999999999988888876644321 0222334445566677777778888999999999
Q ss_pred CcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 411 TSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 411 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
++.+|+.+++.+++.++|..+++.++|.+.+..|
T Consensus 382 ~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 382 SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=159.13 Aligned_cols=301 Identities=10% Similarity=-0.020 Sum_probs=186.1
Q ss_pred hhhHHHHHHHH------HhhhhHHHHH-HHHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHHhh
Q 011365 52 SSFSFSLFGRL------LLSFRKGFLI-TAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEF 117 (487)
Q Consensus 52 ~~~~~~~~G~~------r~Grr~~l~~-~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~ 117 (487)
..+.-|++|.+ |+||||..++ +.+..+++..++...|+ ...+++..++..++.... .+-.++..|.
T Consensus 58 Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~l 137 (460)
T PRK11462 58 DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVI 137 (460)
T ss_pred HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 34556777877 8999766654 66777777776655543 345666677778888877 5555888899
Q ss_pred cC-CCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-------hhhHHHHHHhHHHHHHHHHHH-HhcCCCchhhhhcCCh
Q 011365 118 IP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------LGWRWLLGLSAFPSSLLLLLY-SVTPESPRYLCLKGRT 188 (487)
Q Consensus 118 ~~-~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-------~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~~~~~~~~~ 188 (487)
.+ +++|++..++...+..+|..+++.+...+... .+|+....+.+++.++..+.. ...+|.++. +.
T Consensus 138 t~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-----~~ 212 (460)
T PRK11462 138 TNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-----PP 212 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-----Cc
Confidence 86 78899999999999999988887776554432 357777777777666654333 333432210 00
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccch
Q 011365 189 AEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGG 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (487)
++ ...
T Consensus 213 ~~---------------------------------------------------------------------------~~~ 217 (460)
T PRK11462 213 TT---------------------------------------------------------------------------TSM 217 (460)
T ss_pred cC---------------------------------------------------------------------------CCH
Confidence 00 000
Q ss_pred hhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHH
Q 011365 269 ITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAA 348 (487)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 348 (487)
...++..++++.++......+..........+...|...+.. ...+..........++.+++.++++
T Consensus 218 ~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~-------------g~~~~~~~~l~~~~i~~iig~~l~~ 284 (460)
T PRK11462 218 REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL-------------GTPEVFVAFLTTYCVGNLIGSALAK 284 (460)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc-------------CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 115666677766665544433333333333333333333320 1112223455566778888999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhHhccCC--cchHHHHHHHHHHHHHhhhHHHhhhcccccC-------CcchhHHHH
Q 011365 349 AMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP--KGLTTGLLFGARICITVTFTVVYVYAPEIYP-------TSVRTTGVG 419 (487)
Q Consensus 349 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g 419 (487)
++.||+++|+.+..+..+.++..+.+.+.+. .....+..++.+++.+...+..+++..|..+ .+..|..++
T Consensus 285 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a 364 (460)
T PRK11462 285 PLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFA 364 (460)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHH
Confidence 9999999998876544433332222322222 2223344455666666666777777777765 333456667
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 420 VASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 420 ~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
..+++..+|..+++.+.|.+.+..|+
T Consensus 365 ~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 365 GTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77788999999999999999886654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=144.83 Aligned_cols=332 Identities=15% Similarity=0.095 Sum_probs=223.9
Q ss_pred hHHHHHHHH--Hhhh-hHHHHHHHHHHHHHHHHHhhchh--H-HHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 54 FSFSLFGRL--LLSF-RKGFLITAIVTSAAGLLSAFAPN--Y-YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 54 ~~~~~~G~~--r~Gr-r~~l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
+.++..|.. +.|+ |+.+-....+..++.++..++++ + +..++..++..++.... ..-.+++.+..++++-++.
T Consensus 73 ~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ri 152 (438)
T COG2270 73 LLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRI 152 (438)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcc
Confidence 446677777 5665 55555566666777777777765 4 44555677777877777 4455999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh---h---------------chhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCC
Q 011365 127 MVIFQTFWTVGTILEAGIAWLV---M---------------PRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGR 187 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l---~---------------~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~ 187 (487)
.+.......+|..+.-+..... . +...-|..+.+.++..++. +..++..++.++-. ...
T Consensus 153 S~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~--~~~ 230 (438)
T COG2270 153 SGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS--SPP 230 (438)
T ss_pred cccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc--ccc
Confidence 8888877778877655543211 1 2335788888888877776 44555555554310 001
Q ss_pred hHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccc
Q 011365 188 TAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (487)
++......+++.
T Consensus 231 ~~~l~~g~k~L~-------------------------------------------------------------------- 242 (438)
T COG2270 231 PTALRNGFKELK-------------------------------------------------------------------- 242 (438)
T ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Confidence 111112222211
Q ss_pred hhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHH
Q 011365 268 GITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 346 (487)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (487)
.+++++++++....+++..+.+ .-...++..+...+.. +.| .+..+.........+..++|+++
T Consensus 243 --~t~k~i~~~~~i~~FLiA~~~~---~DGv~til~~~~~fg~~~~g----------ls~~~lll~g~~~~vvA~lg~ii 307 (438)
T COG2270 243 --STFKEIRGRKNLVLFLIARFFY---IDGVNTILAMGGVFGAADLG----------LSSTELLLIGIALSVVAALGAII 307 (438)
T ss_pred --HHHHHHhcccchHHHHHHHHHH---HhhHHHHHHHHHHHHHHHcC----------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 1566666554444443332222 1112222222222222 122 55555577777888999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh
Q 011365 347 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR 426 (487)
Q Consensus 347 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 426 (487)
.|++.||+|.|+++.++.++..+..+...+........++..+.|.+.++.++..-++..+.+|+++-++.+|+++..++
T Consensus 308 ~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgr 387 (438)
T COG2270 308 AGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGR 387 (438)
T ss_pred HHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhh
Confidence 99999999999999998888887777777766666777788899999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 427 IGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 427 ~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
..+.++|++.+.+.+.+|....-+...++.+....+.++..|+.
T Consensus 388 a~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 388 AASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999999999999988865554444444444444455555444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=166.04 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=211.9
Q ss_pred hhhHHHHHHHH------HhhhhHHHH-HHHHHHHHHHHHHhhc-h-------hHHHHHHHHHHHhhhccch-HHHHHHHH
Q 011365 52 SSFSFSLFGRL------LLSFRKGFL-ITAIVTSAAGLLSAFA-P-------NYYLLLFFRCLVGLGLGGG-PVLASWFL 115 (487)
Q Consensus 52 ~~~~~~~~G~~------r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l~G~~~g~~-~~~~~~i~ 115 (487)
..+.-+++|.+ |+||||..+ ++....+++.+++... | ....+.+..++..++.... .+..++..
T Consensus 50 dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~ 129 (428)
T PF13347_consen 50 DAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIP 129 (428)
T ss_pred hhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCc
Confidence 34445566666 899877665 5778888888877766 4 2334566777778888888 56668899
Q ss_pred hhcC-CCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-------hhhHHHHHHhHHHHHHHH-HHHHhcCCCchhhhhcC
Q 011365 116 EFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------LGWRWLLGLSAFPSSLLL-LLYSVTPESPRYLCLKG 186 (487)
Q Consensus 116 ~~~~-~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-------~~w~~~f~~~~~~~~i~~-~~~~~l~e~p~~~~~~~ 186 (487)
|..+ +++|.+..+....+..+|.++...+...+.+. .+|+....+.+++.++.. +..+..+|.++
T Consensus 130 ~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------ 203 (428)
T PF13347_consen 130 ELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------ 203 (428)
T ss_pred cccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------
Confidence 9997 57899999999999999987666666655431 269999998888888774 44455565111
Q ss_pred ChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhcccc
Q 011365 187 RTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNM 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (487)
+.++.+ ++.
T Consensus 204 ~~~~~~-----------------------------------------------------------------------~~~ 212 (428)
T PF13347_consen 204 EVTEQE-----------------------------------------------------------------------KKI 212 (428)
T ss_pred cccccc-----------------------------------------------------------------------ccc
Confidence 000000 000
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHH
Q 011365 267 GGITALLILLSPELIKSTLLLWLVFFG-NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL 345 (487)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (487)
+..+.++++++++.++......+.... .........++..+.. ...+..+.......+..+++.+
T Consensus 213 ~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~~~~~~~~~~~~~~~~v~~~ 278 (428)
T PF13347_consen 213 SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNEGLISIFMLIFFVASIVGSP 278 (428)
T ss_pred ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCchhhHHHHHHHHHHHHHHHH
Confidence 011156777777665554444333322 2222222222333322 2223345666677888899999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCC-------cchhH
Q 011365 346 LAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPT-------SVRTT 416 (487)
Q Consensus 346 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~ 416 (487)
+.++++||+|+|+.+..+..+.+++.+.+.+.. +.+...+...+.+++.+..+...+++.+|..+. +..|.
T Consensus 279 ~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 279 LWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 999999999999999999999988887777654 777788888899999999999999999998863 44689
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 417 GVGVASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 417 ~~g~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
.+|+.++...++..+++.+.|.+.+..|+
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999887664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=146.15 Aligned_cols=304 Identities=15% Similarity=0.114 Sum_probs=206.6
Q ss_pred hHHHHHHHH------HhhhhHHHHH-HHHHHHHHHHHHhhchh------HHHHHHHHHHHhhhccch-HHHHHHHHhhc-
Q 011365 54 FSFSLFGRL------LLSFRKGFLI-TAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEFI- 118 (487)
Q Consensus 54 ~~~~~~G~~------r~Grr~~l~~-~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~- 118 (487)
+.-|+.|.+ |+||+|..++ +.+..++.+.++..+++ ....++..++.+++.... .+-.++..|+.
T Consensus 63 i~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~ 142 (467)
T COG2211 63 ITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ 142 (467)
T ss_pred HhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC
Confidence 445566766 8998665554 77888888888887773 455677789999999888 55557888888
Q ss_pred CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc-------hhhhHHHHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHH
Q 011365 119 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAE 190 (487)
Q Consensus 119 ~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~-------~~~w~~~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~ 190 (487)
++++|.+..++.+.+.++|.++...+...+.. ..||+..-.+.++++.+..+. ++-.+|.+.. .++.++
T Consensus 143 d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~---~~~~~~ 219 (467)
T COG2211 143 DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVE---TQPTKT 219 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc---cccCcc
Confidence 56889999999999999997776665555432 458888888888888777444 4444544320 000000
Q ss_pred HHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhh
Q 011365 191 ARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGIT 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (487)
..+.....
T Consensus 220 ------------------------------------------------------------------------~~~~~~~~ 227 (467)
T COG2211 220 ------------------------------------------------------------------------GVKLKLKD 227 (467)
T ss_pred ------------------------------------------------------------------------cccccHHH
Confidence 00000011
Q ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHH
Q 011365 271 ALLILLSPELIKSTLLLWLVFFGNAFSYYGL-VLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAA 349 (487)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 349 (487)
.+..+++++.++..++..++.++......+. .+|..+.+ +.+.............+.+++.++..+
T Consensus 228 ~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-------------g~~~l~~~~~~~~~~~~~l~~~~~~p~ 294 (467)
T COG2211 228 SFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-------------GDPELFAYLLLLASGAGLLIGLILWPR 294 (467)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-------------CChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556677765555444333333222222222 22222221 122223345565666667777899999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccC-------CcchhHHHHH
Q 011365 350 MVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYP-------TSVRTTGVGV 420 (487)
Q Consensus 350 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~ 420 (487)
+.+|+|+|+++..+.++.+++.+++.+.+ +.+..++..++.+++.+...+..+++++|..+ .+.-|..+|.
T Consensus 295 L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 99999999999999999998888877655 34445555677888899999999999999864 3556888999
Q ss_pred HHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 421 ASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 421 ~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
..++..+|.+++..+.|++.+..|+
T Consensus 375 ~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 375 MTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=153.17 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=108.8
Q ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHH
Q 011365 271 ALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAM 350 (487)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 350 (487)
.++.+++++....... ..+.....+.......|.+.++.- +.+............++.+++.++.+++
T Consensus 220 ~~~~l~~n~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~l~~~l 287 (448)
T PRK09848 220 SLQTLKRNRPLFMLCI---GALCVLISTFAVSASSLFYVRYVL---------NDTGLFTVLVLVQNLVGTVASAPLVPGM 287 (448)
T ss_pred HHHHHhCCchHHHHHH---HHHHHHHHHHHHhhhheeeEeeec---------CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777755443333 233333333333444555553321 1222222233333345677788999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCc-------chhHHHHHH
Q 011365 351 VDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTS-------VRTTGVGVA 421 (487)
Q Consensus 351 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~ 421 (487)
.||+|+|+.+..+.++.+++.+.+.+.+ +.+......++.+++.+...+...++..|..|.+ .+|..+|+.
T Consensus 288 ~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 288 VARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 9999999999988888777766665433 3344445566778888888888898988887643 469999999
Q ss_pred HHHHhHhHhHHHHHHHHHHhhccc
Q 011365 422 SSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 422 ~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
++...+|..+++.+.|.+.+..|+
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887664
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=140.01 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=90.9
Q ss_pred HHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCC--CchhHHHH
Q 011365 57 SLFGRL--LL-SFRKGFLITAIVTSAAGLLSAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVI 129 (487)
Q Consensus 57 ~~~G~~--r~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~ 129 (487)
.+.|.+ |+ ||||++.++.++.+++.++++..+ +...++++..+.++|.|.. +...+++.|.+|++ +|..++++
T Consensus 63 ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i 142 (493)
T PRK15462 63 ILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSL 142 (493)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehH
Confidence 344555 98 999999999999999987776543 2233444555555677777 77778999999876 68999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH
Q 011365 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY 172 (487)
Q Consensus 130 ~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~ 172 (487)
...+.++|..++|.+.+++.+.+||+..|.+.++..++.++.+
T Consensus 143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998999999998766544444333
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=138.98 Aligned_cols=375 Identities=13% Similarity=0.065 Sum_probs=239.9
Q ss_pred CchHHHHHHHHHHHhcccccccccCccccchhccccccc------chhhhHHHHH---HHH---HhhhhHHHHHHHHHHH
Q 011365 11 SPCSVLLICFAMIFCDIAFDVPELSWNTTTLLNLHFSES------DQSSFSFSLF---GRL---LLSFRKGFLITAIVTS 78 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---G~~---r~Grr~~l~~~~~~~~ 78 (487)
+||.+++++.+..+.. +....+++-......++.-+.. +...+....+ |.+ ++|-|..+.++..+.+
T Consensus 42 rRW~vLl~~slL~~SN-~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~ 120 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSN-GMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNG 120 (480)
T ss_pred hHhHHHHHHHHHHhcC-cchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHH
Confidence 4677777766666665 5544444433322222222221 1222222223 333 9999999999999999
Q ss_pred HHHHHHhhc------hhHH--HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhh
Q 011365 79 AAGLLSAFA------PNYY--LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM 149 (487)
Q Consensus 79 ~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~ 149 (487)
+|..+-..+ +.++ ....+..+.+.+.-.. ........-|+++++|..+..+-..+..+|.+++.++...+.
T Consensus 121 iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 121 IGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred HHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence 999876654 2344 6667778887777766 344466678999999999999999999999998888877775
Q ss_pred ch------hhhHH--HHHHhHHHHHHHHHH-HHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhh
Q 011365 150 PR------LGWRW--LLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQ 220 (487)
Q Consensus 150 ~~------~~w~~--~f~~~~~~~~i~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
.+ ..|.. .|+....++.+.+.+ .+..++.|+.. +..+.....
T Consensus 201 ~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s~~~~~------------------------ 251 (480)
T KOG2563|consen 201 PSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSASQAALQ------------------------ 251 (480)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CchhHhhhh------------------------
Confidence 42 35655 344444444333322 23333333210 010000000
Q ss_pred hhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHh
Q 011365 221 NKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYG 300 (487)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (487)
+.+-.++++.++++ +.+++..+++.+....++.
T Consensus 252 --------------------------------------------~~~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~ 284 (480)
T KOG2563|consen 252 --------------------------------------------DASFPKSIKSCFKN---RQFIILAICYGIGLGLFNS 284 (480)
T ss_pred --------------------------------------------cCcHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHH
Confidence 00122277777777 6667777777777777777
Q ss_pred hhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHh-Hhc--
Q 011365 301 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMFFCCCIFLVP-LLF-- 376 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~-~~~-- 376 (487)
....+...+...+ ++...++....+..+++++++.+.|.+.||.+. |...++......++... ...
T Consensus 285 l~~~l~~~l~~sg----------Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~ 354 (480)
T KOG2563|consen 285 LSTLLNLALCPSG----------YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL 354 (480)
T ss_pred HHHHhhhcccccc----------CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7766664443333 555566888889999999999999999999875 34444444444444222 221
Q ss_pred -cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc----chhHHHH
Q 011365 377 -QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH----QTAALIL 451 (487)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g----~~~~~~~ 451 (487)
....+.+.....+.|++..+..|+..-+..|..-|..-++..|+.+..+++-+.+-.++.+...+..+ +....+.
T Consensus 355 ~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~ 434 (480)
T KOG2563|consen 355 FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIF 434 (480)
T ss_pred cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhH
Confidence 22334556667778888888899999999998777777999999999999999999999998888776 4444455
Q ss_pred HHHHHHHHHHheeeccccCCC
Q 011365 452 FELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~ 472 (487)
.+....+..++..++.++.++
T Consensus 435 ~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 435 LTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred hHHHHHHHHHHHhhhhhhHHh
Confidence 555555555555555544333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=130.07 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS 359 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 359 (487)
.+...+.+.+..|+.....+...-.+|.+-++.+ .+...++...+.++++..++.++...+.||+.||++
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~----------vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l 80 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLG----------VSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL 80 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3456666777778888888888888899987766 777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 360 MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
++....+.+++.++..+.++.+...+.-++.++..+.+++...+...+++|+++|+++.++......++..+|.+++.++
T Consensus 81 Ll~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 81 LLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
-|.+||+.+|+..+++.+++.+..+...|
T Consensus 161 g~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 161 GQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888888887
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-12 Score=117.07 Aligned_cols=291 Identities=13% Similarity=0.067 Sum_probs=190.5
Q ss_pred hhHHHHH-HHHHHHHHHHHHhhc-----h-------h--HH--HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHH
Q 011365 66 FRKGFLI-TAIVTSAAGLLSAFA-----P-------N--YY--LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWM 127 (487)
Q Consensus 66 rr~~l~~-~~~~~~~~~~~~~~~-----~-------~--~~--~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~ 127 (487)
||..+++ +..+.+.+..+..++ . + .+ ...+...+.|+|.+.. .+..++++|..|+++|+++.
T Consensus 48 rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v 127 (403)
T PF03209_consen 48 RRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVV 127 (403)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhH
Confidence 5555555 666666655544432 2 2 22 3445578888888888 66779999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHH---HHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 128 VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL---LLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 128 ~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i---~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
++.....-+|.+++..+.+.+.+.++-.-..-+.....++ .-+...+-.|.+.....+.+
T Consensus 128 ~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~----------------- 190 (403)
T PF03209_consen 128 AIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA----------------- 190 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC-----------------
Confidence 9999999999999999999988876543333322222222 21112221222110000000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
++++......++++..++..+++
T Consensus 191 ---------------------------------------------------------~~~~~~f~~a~~~~~~~~~a~~f 213 (403)
T PF03209_consen 191 ---------------------------------------------------------ERPRPPFREAWRQVWASPQARRF 213 (403)
T ss_pred ---------------------------------------------------------CCCCccHHHHHHHHHhCCChhHH
Confidence 00000011155666655544544
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHh-hhhhhHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD-RLGRKLSMSSM 363 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~ 363 (487)
...... .++.++.....+..|..+ ..+++..+...+....+.+.++|..+.+++.. |.++++....+
T Consensus 214 ~~fl~l---~t~a~~~QD~iLEPygg~---------Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 214 FVFLFL---GTLAFFMQDVILEPYGGE---------VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred HHHHHH---HHHHHHhhHHHcCCchhH---------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 433222 223333333333222211 12367777777888888899999988888776 57777777777
Q ss_pred HHHHHHHHHhHh---ccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 364 FFCCCIFLVPLL---FQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 364 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
+..+++++.++. ...+.+.+....++.|++.+.......+...++.++++.|..+|.-...+.++..++..++|.+.
T Consensus 282 ~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 282 CLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666554 34567788888999999999998888999999999999999999999999999999999999998
Q ss_pred hh
Q 011365 441 HG 442 (487)
Q Consensus 441 ~~ 442 (487)
|.
T Consensus 362 D~ 363 (403)
T PF03209_consen 362 DL 363 (403)
T ss_pred HH
Confidence 84
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=133.41 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=97.9
Q ss_pred hHHHHHHHH--Hhhh-hHHHHHHHHHHHHHHHHH-hhc---h-hHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchh
Q 011365 54 FSFSLFGRL--LLSF-RKGFLITAIVTSAAGLLS-AFA---P-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGF 125 (487)
Q Consensus 54 ~~~~~~G~~--r~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~ 125 (487)
+..+.+|.+ |.+. |+.++.+.++..+|.++. ++. + .-+.++++|++.|+|.|...+.-+|+++....++|.+
T Consensus 86 i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 86 IFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPR 165 (488)
T ss_pred hcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHH
Confidence 445566666 5554 899999999999999887 332 3 5778899999999999998888899999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhch-------------hhhHHHHHHhHHHHHHH-HHHHHhcCCCch
Q 011365 126 WMVIFQTFWTVGTILEAGIAWLVMPR-------------LGWRWLLGLSAFPSSLL-LLLYSVTPESPR 180 (487)
Q Consensus 126 ~~~~~~~~~~lG~~i~~~~~~~l~~~-------------~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~ 180 (487)
+++....+..+|.++||.+...+..- .-+..+-++++++.++. +++..+++|.++
T Consensus 166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 99999999999999999887765421 12445667777777777 444556677654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=132.42 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
++.........+......+......|.+.++.+ .+..+.+...+...++..++.++.|.+.||+|||+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~ 88 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLG----------ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV 88 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 344344444434343444444445666665544 6667778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..+.++.+++.+...+.++.+..++..++.|++.+...+...+++.|.+|+++|+++.++.....++|..++|.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 89 ILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877777778888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 441 HGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+..||...+++.+++.++..+......||.
T Consensus 169 ~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 169 ELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999998888877766655444433334443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=131.17 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+.++..++.+....+.--.+..-.|.+.++.+ .+..+.+.+.+.+.+...++.++.|.++||.++|..+.
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~----------lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~ 98 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG----------LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence 33333444444444444456666777775544 77777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH--HHH
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA--VAL 439 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~--g~l 439 (487)
.+++++++..+++.+.++.+.+.++.++.|.+.+...|.....+...+|+++||+..++-|...++|+.+.|.+. +++
T Consensus 99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.++.+|...|++-++++++.+++.++..|++
T Consensus 179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988999999999999888888877776554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=133.51 Aligned_cols=180 Identities=8% Similarity=0.018 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+.....++.++.............|.+.++.+ .+..+.++..+...++..++.++.|++.||+|||+.+.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~ 77 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLG----------LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIA 77 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcC----------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHH
Confidence 44445555555555555566666676655444 66667788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+.++..++.+...+.++.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+|..+++.+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 78 GIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888888888887788888899999999889988999999999999999999999999999999999998874
Q ss_pred ------hccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 442 ------GCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 442 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
..||+..+++.++..++...+.+++.||++
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 358888888877777666665656666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=134.61 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
.++.++...+..+....+.|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLG----------LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 333444444444455667787776555 6666778888899999999999999999999999999999999
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
.+++.++....++.+......++.+++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+++.+..||+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 98888888777777666666677788888788888999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHheeecccc
Q 011365 447 AALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
..+++.+++.++..+...+..||
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 88887776655444433333344
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=130.00 Aligned_cols=162 Identities=16% Similarity=0.077 Sum_probs=132.4
Q ss_pred HHHHHHHHHhhhhhhh-hhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011365 291 FFGNAFSYYGLVLLTT-ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCI 369 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 369 (487)
.+.............| .+.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~ 74 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELG----------LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL 74 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCST----------TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence 3334444444445555 4544433 6667778888899999999999999999999999999999998888
Q ss_pred HHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHH
Q 011365 370 FLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAAL 449 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~ 449 (487)
+.+...+.++.+...+..++.|++.+...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 75 GSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred HHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 85554444666677788889999999999999999999999999999999999999999999999999999888998888
Q ss_pred HHHHHHHHHHHHh
Q 011365 450 ILFELVILLSGIS 462 (487)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (487)
++.+++.++..++
T Consensus 155 ~~~~~~~~~~~il 167 (352)
T PF07690_consen 155 LISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchhhhhhhh
Confidence 8888888877664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=132.44 Aligned_cols=160 Identities=7% Similarity=-0.043 Sum_probs=133.6
Q ss_pred hhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC
Q 011365 300 GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
......|.+.++.+ .+..+.++..+...++..++.+..|.+.||+|||+++..+..+.+++.+...+.++
T Consensus 27 ~~~~~~~~l~~~~~----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 96 (390)
T PRK03545 27 VPVGLLSDIAQSFH----------MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN 96 (390)
T ss_pred HHHcchHHHHhHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334566665554 66677788888888888899999999999999999999999999988888888888
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLS 459 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 459 (487)
.+...+..++.|++.+...+...+++.|.+|+++|++++|+......+|..++|.+.+.+.+..||+..+++.+++.++.
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~ 176 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALIT 176 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 88777777888888888888889999999999999999999999999999999999999999999999988888777666
Q ss_pred HHheeecccc
Q 011365 460 GISVLLFPFE 469 (487)
Q Consensus 460 ~~~~~~~~~~ 469 (487)
.+......|+
T Consensus 177 ~~~~~~~~~~ 186 (390)
T PRK03545 177 LLLLIKLLPL 186 (390)
T ss_pred HHHHHHhCCC
Confidence 5554444444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=119.55 Aligned_cols=357 Identities=15% Similarity=0.052 Sum_probs=208.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCC--CchhHHHHHHHHHHHh
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVG 137 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG 137 (487)
-+|+|++++++.++.++|-++.+.++ +...++++-.+.++|.|.. +...+++.|.+|++ +|...++++..+.++|
T Consensus 88 ~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 88 VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 68999999999999999999999884 7889999999999999999 99999999999765 4778899999999999
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhh--cC---ChHHHHHHHHHHHhHhCCCCCCCCCC
Q 011365 138 TILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCL--KG---RTAEARHVLEKIAKINGTKLPSGNLV 212 (487)
Q Consensus 138 ~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (487)
.+++|.+.+++.+.+||...|.+.++-..+.++.+...+..-..... +. +..+.......+-...-.. + ...
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~ 244 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA-L--LTL 244 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH-H--HHH
Confidence 99999999999999999999999988777776665554421110000 00 0000000000000000000 0 000
Q ss_pred cchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhC--h--HHHHHHHHHH
Q 011365 213 SDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS--P--ELIKSTLLLW 288 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~~ 288 (487)
....+..+.... ......+ ..-+.+.++ + ..+++.+..+
T Consensus 245 ~l~~~~~~~~~~----------------~~~i~~~---------------------~~~~~~~~~~~~~~~er~r~~~~~ 287 (498)
T COG3104 245 LLNQNTFSGVLL----------------VISILIA---------------------IIYFAEAFRSPKVFDERRRLLAAI 287 (498)
T ss_pred HHHHHHHHHHHH----------------HHHHHHH---------------------HHHHHHHhccCccHHHHHHHHHHH
Confidence 000000000000 0000000 000011110 0 1122222222
Q ss_pred HHHH-------HHHHHHHhhhhhhhhhhccccccccccccCCccccc-cchhhhhhhhcchhHHHHHHHHHhhhhhh---
Q 011365 289 LVFF-------GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI-NYGDVFITSFAEFPGLLLAAAMVDRLGRK--- 357 (487)
Q Consensus 289 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--- 357 (487)
..+. .+.-....+..+.....+. +...-+. ..+.-++..+.-++.+++..++..|.+++
T Consensus 288 ~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~----------~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ 357 (498)
T COG3104 288 PLFLFAVIFWALYEQMGSSLNLYADRNVNR----------QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQ 357 (498)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhcc----------cccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCC
Confidence 2211 1111112222222222211 1011112 25566666666677777777777775433
Q ss_pred ----HHHHHHHHHHHHHHHhHhc-----c-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHH
Q 011365 358 ----LSMSSMFFCCCIFLVPLLF-----Q-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASS 423 (487)
Q Consensus 358 ----~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 423 (487)
.-+.++.++++.+.+.+.. . .+.+..+...++..++.-...|+..+++....|+...+..++....
T Consensus 358 ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfL 437 (498)
T COG3104 358 PSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL 437 (498)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 1234455555555544432 1 2335566677888899999999999999999999999999999888
Q ss_pred HHhHhHhHHHHHHHH------HHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 424 IGRIGGMVCPLVAVA------LVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 424 ~~~~g~~~~~~i~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
....|+.++..+.+. ..+.......|...+...++.........|+
T Consensus 438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 888888887777663 2333334455666666666665555544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=132.50 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=135.2
Q ss_pred hhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC
Q 011365 300 GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.+...+.++
T Consensus 23 ~~~~~~p~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 92 (385)
T TIGR00710 23 MYLPAFPEIAADLS----------TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92 (385)
T ss_pred HhcccHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 33334566655444 66666788888999999999999999999999999999999888888888877777
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLS 459 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 459 (487)
.+...+..++.+++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+++.+++.++.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 77777778888888888889999999999999999999999999999999999999999999889888888777776666
Q ss_pred HHheeeccccCCC
Q 011365 460 GISVLLFPFETTG 472 (487)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (487)
.+...+..||+++
T Consensus 173 ~~~~~~~~~~~~~ 185 (385)
T TIGR00710 173 SALIFFILPETLP 185 (385)
T ss_pred HHHHHHhCCCCCC
Confidence 6655555555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=136.91 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=114.4
Q ss_pred HhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC
Q 011365 299 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 378 (487)
..+....|.+..+.+ .+....++..+...++.+++.+++|+++||+|||+.++++.++.+++.++..+.+
T Consensus 184 ~~is~ilp~i~~~~g----------ls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~ 253 (742)
T TIGR01299 184 FVVGFVLPSAEKDLC----------IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253 (742)
T ss_pred HHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666654443 5555667788888999999999999999999999999999888888877777777
Q ss_pred CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
+.+.+++..++.|++.++..+...+++.|.+|++.|++.+++.+.+..+|.++++.+...+....|
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777788888999999999999999999999999999999999999999999999988877765443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=132.94 Aligned_cols=179 Identities=10% Similarity=-0.011 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
.+.++.+.+..+......+....+.|.+.++.+ .+....++..+...++..++.++.|++.||+|||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 78 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLG----------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF 78 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 345566666677777777777778888886655 6666666777778888889999999999999999999
Q ss_pred HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..+..+.+++.+...+.++.+...+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 79 FTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 98888887777766666677777777888899999889999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 441 HGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+..||...+.+...+..+..+......|+
T Consensus 159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 159 EYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998888877766655555544444443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=124.75 Aligned_cols=311 Identities=18% Similarity=0.162 Sum_probs=210.2
Q ss_pred hhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch---HHHHHHHHhhcCCCCchh
Q 011365 51 QSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG---PVLASWFLEFIPAPNRGF 125 (487)
Q Consensus 51 ~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~---~~~~~~i~~~~~~~~r~~ 125 (487)
.+.+.++++|.+ |+|||..+.+..+...+..++..+.. +|.++ +.|+..+.. ....++++|....++|..
T Consensus 74 ~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 74 LTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 456778889998 99999999999999998888887766 33333 556554443 455689999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 126 WMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 126 ~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
..|+.......+..++|.+++.+...+|.-..|.+..+..++. .....++||+-... ++.+ ....+
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~---~~~~---~~~~~------- 215 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK---ERSD---ATLRE------- 215 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc---cccc---ccccc-------
Confidence 9999999999999999999999999999999999999988888 55667788875411 1110 00000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
..++... +. + .-..++...+.+..|..
T Consensus 216 ~~~~~~~--------~~-------------------------~--------------------~~~~~~~~~~~~~~r~~ 242 (463)
T KOG2816|consen 216 LTPGSLD--------SS-------------------------H--------------------VADAFQSLTKVGPDRLL 242 (463)
T ss_pred cCCCccc--------ch-------------------------h--------------------hhhhhhhhcccCCCccc
Confidence 0000000 00 0 00011111111112333
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHH-HHHhhhhhhHHHHH
Q 011365 285 LLLWLVFFGNAFSYY-GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAA-AMVDRLGRKLSMSS 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~ 362 (487)
+.+.+..+....... ...-..+.+.+. ..+.+....+...+..+....++.++.. .+...+|.|+....
T Consensus 243 l~l~l~~~~~~~~~~~~~~~~~~~yl~~---------~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 243 LLLLLVAFLSSLPEAGGASDVLLLYLKA---------KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred hHHHHHHHHHHHHHhcCceeEEEEEEee---------ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 332232222221111 111011222211 2235555556566666677777776665 77788899998889
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
|.....+....+.+.++.|..+....+.. ......|...+..+...+++++|+++++...+..+.+.++|.+.+.+...
T Consensus 314 Gl~~~~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFATETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHH-hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999888887665555443 34566788899999999999999999999999999999999999988654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=131.16 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
...+.+...+......+......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 16 TIGLCFLVALLEGLDLQSAGVAAPRMAQEFG----------LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 3444444555555555566666677766554 666677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+.++..++.+...+.++.+...+..++.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 88888887777777777777778888889988888899999999999999999999999999999999999999888888
Q ss_pred ccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 443 CHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.+|...+++.+++.++..++.....||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 166 AAWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8888877777666555554444444554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.3e-13 Score=131.00 Aligned_cols=179 Identities=15% Similarity=0.056 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
....+.+..+...........-.|.+.++.+ .+.++..+..+.+.++...+.+..|+++||+|||+.+..
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~----------~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~ 76 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLG----------ASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML 76 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444555555555555566666788776544 555566788888888888899999999999999999999
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhccccc-CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIY-PTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
+..+..++.+.....++.+..++..++.|++.+...+.....+.+.+ |+++|++++|+......+|..++|.+.|++.+
T Consensus 77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998888888888888888888899988888887777776665 67899999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 442 GCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
+.||++.|++...+.++..++..+..|+.+
T Consensus 157 ~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 157 HFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999988877776666665555555543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=133.28 Aligned_cols=174 Identities=9% Similarity=-0.004 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
+.+..+.............|.+.++.+ .+..+.++..+...++..++.++.|++.||+|||+.+..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGDLG----------SSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence 334444444444455566777776554 6666678888899999999999999999999999999999999
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
..++.+.....++.+...+..++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+.|++.+..+|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 156 (485)
T TIGR00711 77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR 156 (485)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence 99888888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHheeeccccC
Q 011365 447 AALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
..+++.+.+.++..++..+..|++
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCc
Confidence 888877766666655555555554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=128.78 Aligned_cols=176 Identities=13% Similarity=0.003 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
++.+....++....++....+.|.+.+ +.+ .+..+.++..+...++.+++.++.|+++||+|||+.+..
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~ 78 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYS----------LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL 78 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence 334444555555555565555665553 233 667777888888888899999999999999999999998
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+.++.+++.+.+.+.++.+.......+.+.+.+...+...++..|.+|+++|++++|+.+...++|..++|.+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~- 157 (395)
T PRK10054 79 AITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM- 157 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888777777766665555555555666666678888999999999999999999999999999999999998875
Q ss_pred ccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 443 CHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.++...+++.+++.++..+...+..++.
T Consensus 158 ~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 158 QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888888877766666554444434433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=132.53 Aligned_cols=178 Identities=16% Similarity=0.093 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 362 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 362 (487)
.........+.............|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 87 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWG----------LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW 87 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccC----------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 3333444444444555555666777765544 566666778888888999999999999999999999999
Q ss_pred HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 363 MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+.++.+++.++....++.+...+..++.+++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 98888888877777777777777788888888888999999999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 443 CHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.||...+++.+++..+...+.....||+
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 8988877777555555544444444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=128.67 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=135.6
Q ss_pred HHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011365 291 FFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 370 (487)
.+.............|.+.++.+ .+....+...+...++..++.++.|+++||+|||+.+..+.++..++
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLN----------ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 33333444444455676665444 55556677888888899999999999999999999999998888888
Q ss_pred HHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHH
Q 011365 371 LVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI 450 (487)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~ 450 (487)
.+.....++.+......++.+++.+...+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|...++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 82 SLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 88777776666666667778888888888899999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHheeeccccCCC
Q 011365 451 LFELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
+.+++.++..++.....||+++
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 8777776666655555566543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=131.41 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=135.4
Q ss_pred hhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC
Q 011365 300 GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
.+....|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.+...+.++
T Consensus 12 ~~~~~~~~~~~~~g----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 12 NLSFAAPMLQEDLG----------LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred hhhHhHHHHHHhhC----------CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 34444555554444 66667788888999999999999999999999999999998888888888877778
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLS 459 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 459 (487)
.+...+..++.|++.+...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+++.+++.++.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999999988888877777666
Q ss_pred HHheeeccccC
Q 011365 460 GISVLLFPFET 470 (487)
Q Consensus 460 ~~~~~~~~~~~ 470 (487)
.++..+..+++
T Consensus 162 ~~~~~~~~~~~ 172 (399)
T TIGR00893 162 GVLWLKFIPDP 172 (399)
T ss_pred HHHhhheecCC
Confidence 66555555444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-13 Score=129.27 Aligned_cols=179 Identities=14% Similarity=0.159 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh
Q 011365 278 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK 357 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 357 (487)
++.++.+...+...+......+....+.|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r 101 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR 101 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 344455555555555555555666666677766554 6666666677778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 358 LSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
+++..+.++.+++.++..+..+.+...+..++.|++.+... ....++.|.+|+++|++++|+.+...++|..+++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 102 YGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777777777666666677777766543 34567889999999999999999888888888877766
Q ss_pred HHHh---------hccchhHHHHHHHHHHHHHHheeecc
Q 011365 438 ALVH---------GCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 438 ~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
.+.+ ..||+..+++.+++.++..++.+++.
T Consensus 181 ~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 5532 14788888888877766655555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=128.23 Aligned_cols=174 Identities=14% Similarity=0.045 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
.....+......+......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVG----------ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcC----------CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 334444444444455555666665544 6666678888899999999999999999999999999999999
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 367 CCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
.+++.++..+.++.+.+.+..++.|++.+...+.....+.|.+|+++|+++++.......++..++|.+.+++.+..+|+
T Consensus 78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 99988888888888888888888999888888888888999999999999999999999999999999999999988999
Q ss_pred hHHHHHHHHHHHHHHheeeccccC
Q 011365 447 AALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
..+++.+++.++..+......||.
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888887776666555444445554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=130.76 Aligned_cols=172 Identities=17% Similarity=0.060 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~ 360 (487)
+..+.+++..+...+.+|+...++|.|+.+.+ ..+.+..+++.......++..++.+++|+++|| +|||+++
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~-------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l 82 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQA-------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM 82 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence 34455566677778888888888888875421 123667777888889999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc---hhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV---RTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
..+.++.+++.+++.+.++.+...+...+.+++.+...+...+++++.+|+++ |++++++.+...++|..++|.+.|
T Consensus 83 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 83 VLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence 99999999988888776666556666677788888888888999999998754 888999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHH
Q 011365 438 ALVHGCHQTAALILFELVILLSG 460 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~~~~~ 460 (487)
++.+..||...|...++..+++.
T Consensus 163 ~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 163 VIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHHHhcChHHHHHHHHHHHHHHH
Confidence 99998898888877665544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=128.39 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=117.7
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC-----CcchHHHHHHHHHHHHHhhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-----PKGLTTGLLFGARICITVTF 398 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 398 (487)
.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..++.+...+.. +.+...+..++.+++.+...
T Consensus 31 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 110 (365)
T TIGR00900 31 GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFT 110 (365)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5555668888888999999999999999999999999988887777666555443 66667777888888888889
Q ss_pred HHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhe
Q 011365 399 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISV 463 (487)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 463 (487)
+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||...+++.++..++..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777666555554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=127.96 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
++.+...++.++...+..+......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~ 80 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG----------LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM 80 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344555566666666666666667777765554 6667778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..+.++.+++.+...+.++.+......++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 81 VTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877777777777788888999989899999999999999999999999999999999999999999988
Q ss_pred hhcc--chhHHHHHHHHHHHHHHheeeccccC
Q 011365 441 HGCH--QTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 441 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+..+ |...+++.++..++. ++.....||+
T Consensus 161 ~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 161 PVWGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 8766 666665544333333 2333334443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-13 Score=126.58 Aligned_cols=182 Identities=12% Similarity=0.014 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS 359 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 359 (487)
.++...+.........+.........|.+.++.+ .+..+.+...+...++..++.++.|+++||+|||+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~ 75 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLN----------VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV 75 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH
Confidence 3344444444444444444444444566665444 666677888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 360 MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
+..+..+..++.+.....++.+...+..++.|++.+...+....+..|.+++++++.+.+..+....++..++|.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 76 ILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777777777777777888887777777788888999989999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
.+..||...+++.+++.++......+..||++
T Consensus 156 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 156 TTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 99889888888777666555444444455543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=123.92 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+..+...+.++.............|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~----------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~ 76 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFN----------LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLI 76 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555555555555566666777765544 66666678888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+.++.+++.++..+.++.+...+..++.+++.+...+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+
T Consensus 77 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 77 FGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888888887777777777777777888888888888888899999999999999999988888999999999988765
Q ss_pred -hccchhHHHHHHHHHHHHHHh
Q 011365 442 -GCHQTAALILFELVILLSGIS 462 (487)
Q Consensus 442 -~~g~~~~~~~~~~~~~~~~~~ 462 (487)
..+|+..+...+++.++..++
T Consensus 157 ~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 157 RSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 468888887777666554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=125.25 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=123.0
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+....+...+...++..++.++.|.++||+|||+.+..+..+.+++.+.....++.+......++.|++.+...+...+
T Consensus 45 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 124 (406)
T PRK15402 45 AGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYA 124 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHH
Confidence 55556677788888999999999999999999999999988888888777777777777777777778887777788889
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
.+.|.+|+++|+++.++......++..++|.+.+.+.+..+|...+++.+++.++..+..+...||++
T Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 125 AIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999988888999999999999999889988888877777766655544555554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=129.39 Aligned_cols=169 Identities=19% Similarity=0.143 Sum_probs=138.5
Q ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh
Q 011365 274 ILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR 353 (487)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 353 (487)
+..++..++.+..+++..+...+.........|.+.++.+ .+..+.+...+...++..++.++.|++.||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 81 (496)
T PRK03893 12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFG----------LTTVQAASLISAAFISRWFGGLLLGAMGDR 81 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666666666777765544 666666778888889999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH
Q 011365 354 LGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP 433 (487)
Q Consensus 354 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (487)
+|||+.+..+.++.+++.+.+.+.++.+...+..++.|++.+...+....++.|.+|+++|++++++.+....+|..++|
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 161 (496)
T PRK03893 82 YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAA 161 (496)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888877777777788888889988888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHHHH
Q 011365 434 LVAVALVHGCHQTAALILF 452 (487)
Q Consensus 434 ~i~g~l~~~~g~~~~~~~~ 452 (487)
.+.+.+.+..+|...+++.
T Consensus 162 ~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 162 QVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHhccCCHHHHHHHH
Confidence 9999999988888776653
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=127.51 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+.....++.++......+......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~ 87 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLG----------LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMM 87 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 33444455555555555555556666655444 56666678888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+.++.+++.+...+.++.+...+..++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 88 WSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 99999998888887777777788888899999998999999999999999999999999999999999999999999888
Q ss_pred hccchhHHHHHH
Q 011365 442 GCHQTAALILFE 453 (487)
Q Consensus 442 ~~g~~~~~~~~~ 453 (487)
..+|...+++..
T Consensus 168 ~~~w~~~f~i~~ 179 (426)
T PRK12307 168 AYGWRAAFFVGL 179 (426)
T ss_pred cCCHHHHHHHHH
Confidence 888888776643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=106.90 Aligned_cols=319 Identities=13% Similarity=0.077 Sum_probs=198.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 142 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~ 142 (487)
..+.|++++++.+...+...+..+.++...+-+..+..|++.+...+-.+++-...|+++..++.+...+..-+|-.++.
T Consensus 67 ~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~ 146 (412)
T PF01770_consen 67 YLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISS 146 (412)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999888777789999889999999999999999999999999
Q ss_pred HHHHHhhc--hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhh
Q 011365 143 GIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQ 220 (487)
Q Consensus 143 ~~~~~l~~--~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
.++..+.. ..+++....+......++++..+++|..++...-+++.++..+ .++ ++.+
T Consensus 147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~---------~~~~---------- 206 (412)
T PF01770_consen 147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANE---------SESD---------- 206 (412)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-ccc---------cccc----------
Confidence 99988765 4467777777777677777778888876653322222111100 000 0000
Q ss_pred hhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHh
Q 011365 221 NKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYG 300 (487)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (487)
+.++.. +++ ++.++.+....+.....-..-++.+++..+++... .-.+-+......++.
T Consensus 207 ----------~~~~~~------~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll---~WSlWWa~atcgy~q 265 (412)
T PF01770_consen 207 ----------KMNESP------ESS--SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLL---LWSLWWAFATCGYYQ 265 (412)
T ss_pred ----------cccccc------ccc--cccccCcccccchHHHHHHHHHHHHHHHhcCchHH---HHHHHHHHHHhHHHH
Confidence 000000 000 00000000000001111111233444444443222 222223333444444
Q ss_pred hhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHhHhccC
Q 011365 301 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL--SMSSMFFCCCIFLVPLLFQQ 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~ 378 (487)
+..|...+.++.. .........+..-....+.+.++.+..|++-.++.+.. .+....++.+.+++++...+
T Consensus 266 v~nYvQ~LW~~v~-------~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~ 338 (412)
T PF01770_consen 266 VINYVQSLWDTVP-------PSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG 338 (412)
T ss_pred HHHHHHHHHHhcC-------CCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444443221 11233334477777778888888899999866666543 33444555566677777788
Q ss_pred CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhH
Q 011365 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGG 429 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 429 (487)
+.+...+..++.+..+....++...-++.....+.-|..+|+.+++..+-.
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 888888877777777777777777777777777777777777766554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=125.35 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=117.4
Q ss_pred hhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC--
Q 011365 301 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-- 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 378 (487)
+....|.+.++ + .+..+.+...+...++..++.++.|+++||+|||+++..+.++.++..+.+.+..
T Consensus 48 ~~~~~p~l~~~-g----------~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-G----------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 116 (452)
T ss_pred HHHhhHHHHHc-C----------CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc
Confidence 44556765533 3 7777778888999999999999999999999999999999888887777665532
Q ss_pred --CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhH-HHHHHHHHHhhccchhHHHHHHHH
Q 011365 379 --PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMV-CPLVAVALVHGCHQTAALILFELV 455 (487)
Q Consensus 379 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~i~g~l~~~~g~~~~~~~~~~~ 455 (487)
+.+...+..++.+++.+...+.....+.|.+|+++|++++|+.+....+|+.+ +|.+...+....+|+..+++.+++
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445556677788877777777788889999999999999999998888754 454433333344788777777766
Q ss_pred HHHHHHheeeccccC
Q 011365 456 ILLSGISVLLFPFET 470 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (487)
.++..++..++.||+
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 666555555554543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=122.91 Aligned_cols=164 Identities=10% Similarity=-0.068 Sum_probs=125.0
Q ss_pred HHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc
Q 011365 297 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF 376 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 376 (487)
.+..+....|.+.++.+ .+..+.++..+.+.++..++.+..|++.||+|||+++..+......+.+....
T Consensus 6 ~~~~~~~~lp~i~~~~~----------~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 75 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDID----------VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD 75 (368)
T ss_pred HHHHHHhhHHHHHHHhC----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 34444555566665544 66666688888889999999999999999999998776555444444332233
Q ss_pred cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHH
Q 011365 377 QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVI 456 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~ 456 (487)
.++...+.+.-++.|++.+. .+.......|.+|+++|++++++.+....+|..+++.+.+++.+..||+..+++.+++.
T Consensus 76 ~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred hccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 34666677777888888775 45555566899999999999999999999999999999999999999999888878877
Q ss_pred HHHHHheeeccccCC
Q 011365 457 LLSGISVLLFPFETT 471 (487)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (487)
++..++.++..||.+
T Consensus 155 ~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 155 AAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHcCCCC
Confidence 777666666667654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=119.20 Aligned_cols=320 Identities=13% Similarity=0.133 Sum_probs=202.8
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc--------------------h--------------------------
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA--------------------P-------------------------- 88 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~--------------------~-------------------------- 88 (487)
.++.+. |.-|-+.+-+|.++++++.+++++- +
T Consensus 150 ~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 229 (735)
T KOG3626|consen 150 IFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKRE 229 (735)
T ss_pred HhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccccc
Confidence 334444 7777788888999999999987652 0
Q ss_pred -h----HH-HHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchh---------
Q 011365 89 -N----YY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--------- 152 (487)
Q Consensus 89 -~----~~-~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~--------- 152 (487)
+ ++ .++++.++.|+|.... +...+|+-|.+.+++-+..+|+......+|.++|-++++++...|
T Consensus 230 ~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 230 KESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 0 12 5677899999999998 888999999999999999999999999999999999999874311
Q ss_pred ----------hhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhh
Q 011365 153 ----------GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNK 222 (487)
Q Consensus 153 ----------~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.|..-|++.+.+.++..+.++++|+..+.. +++.+++ +.+..+.+. +.
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~---~~~~~~~----~~~~~k~~~-~~-------------- 367 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS---QKRKRAR----DLHVLKTES-GG-------------- 367 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc---cccchhh----hhccccccc-cc--------------
Confidence 378888888888888888888888765411 1100000 000000000 00
Q ss_pred hcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhh
Q 011365 223 SLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV 302 (487)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
.+++... .+.-+.-...++.++++ +.+....+...+....+.++.
T Consensus 368 ------~~~~~~~--------------------------~~~ikdfp~s~~~ll~N---~if~~~~l~~~~~~~~~~G~~ 412 (735)
T KOG3626|consen 368 ------AKSDKTF--------------------------GKKIKDFPKSIKRLLSN---PIFMLVVLASVIESLAITGYI 412 (735)
T ss_pred ------ccCCcch--------------------------hhhHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHhhHH
Confidence 0000000 00000112256666666 555566666777777788888
Q ss_pred hhhhhhhccccccccccccCCccccccchhh-hhhhhcchhHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHh---Hhc
Q 011365 303 LLTTELNNGQNKCVSNELQSGKSRDINYGDV-FITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLVP---LLF 376 (487)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~---~~~ 376 (487)
.|+|-|+++ +.+.+...+..+. .+.--+..+|.+++|+++.|+. .|......++...+.++. ..+
T Consensus 413 tFlPKyLE~---------Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~ 483 (735)
T KOG3626|consen 413 TFLPKYLET---------QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFF 483 (735)
T ss_pred HhhHHHHHH---------HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHE
Confidence 999998854 3335665664444 3444456778899999999874 343333333322222221 110
Q ss_pred ----------------------c-------------------------------------------CC------------
Q 011365 377 ----------------------Q-------------------------------------------QP------------ 379 (487)
Q Consensus 377 ----------------------~-------------------------------------------~~------------ 379 (487)
. .+
T Consensus 484 igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv 563 (735)
T KOG3626|consen 484 IGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCV 563 (735)
T ss_pred ecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccccc
Confidence 0 00
Q ss_pred ------c----------------chHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHHHHH
Q 011365 380 ------K----------------GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVA 436 (487)
Q Consensus 380 ------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~ 436 (487)
. ..+++..++..+..+...+....++...+|+++|..++|+..++.+ +|.+-+|.++
T Consensus 564 ~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIif 643 (735)
T KOG3626|consen 564 PTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIF 643 (735)
T ss_pred ccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhh
Confidence 0 0111222222333333445666777888999999999999988876 8889999999
Q ss_pred HHHHhh
Q 011365 437 VALVHG 442 (487)
Q Consensus 437 g~l~~~ 442 (487)
|+++|.
T Consensus 644 G~~ID~ 649 (735)
T KOG3626|consen 644 GAVIDT 649 (735)
T ss_pred hhhHhh
Confidence 999984
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=122.65 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=125.0
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+........+++.++..++.++.|+++||+|||+++..+..+.+++.+.....++.+.+.+..++.|++.+...+....
T Consensus 48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~ 127 (413)
T PRK15403 48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYV 127 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677788888999999999999999999999999998888888888877778777777778888877766677778
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
.+.|.+|++++++++++.+....++..++|.+++.+.+..||+..|++.+++.++..+...+..||+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 128 TVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 889999999999999999999999999999999999988899988888887777666554555566543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=124.81 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-hhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~ 360 (487)
+.++..+.......+.+|++..++|.++.+. .+.+..+++...........++.+++|+++||+ |||+.+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~---------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i 79 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ---------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV 79 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 4555566666777788888888888887432 126666677777788888888999999999998 999999
Q ss_pred HHHHHHHHHHHHhHhccCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCc--chhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTS--VRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
..+.++.+++.+++..... .........+..++.+...+...+++.|.+|++ .|.+++++.+...++|+.++|.+.|
T Consensus 80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g 159 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG 159 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence 9999888887766554321 122333333444555666677788999999875 6999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHh
Q 011365 438 ALVHGCHQTAALILFELVILLSGIS 462 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~~~~~~~ 462 (487)
++.+..||+..|...++..+++.+.
T Consensus 160 ~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 160 YAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHhhhChHHHHHHHHHHHHHHHHH
Confidence 9999999888887765544444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=122.95 Aligned_cols=145 Identities=9% Similarity=-0.055 Sum_probs=120.6
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+....+...+...+...+..++.|+++||+|||+.+..+.++.++..+.+...++.+...+..++.+++.+...+...+
T Consensus 43 ~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~ 122 (400)
T PRK11646 43 WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTA 122 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666678888888888888999999999999999999999999998888877777777777777788887777888899
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
++.|.+|+++|++++|+.+....+|..++|.+.|++. ..|+...+++.+++.++..++..+..||
T Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 123 LVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999998 6688877777766655554444344444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=123.05 Aligned_cols=173 Identities=15% Similarity=0.049 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccc-----cchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 287 LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI-----NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
.++..+.....+.....+.|.+.++.+ .+..+ .+...++..+...++.++.|+++||+|||+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 88 (408)
T PRK09874 19 AWLGCFLTGAAFSLVMPFLPLYVEQLG----------VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLL 88 (408)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhC----------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 344444555555555566777765544 33322 256677788888999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+.+..+++.+.+...++.+...+..++.+++. ...+.....+.+.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 167 (408)
T PRK09874 89 RSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD 167 (408)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766666666666666777654 3457777788899999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 442 GCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
..++...+++.+++.++..+...+..|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 168 SYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88988888887777766665555555543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=102.13 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=109.3
Q ss_pred hhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHH
Q 011365 51 QSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWM 127 (487)
Q Consensus 51 ~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~ 127 (487)
...+..++.|.+ |+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+.. +....++.|..|+++|++.+
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVAL 89 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHH
Confidence 345566777776 999999999999999999999988999999999999999999988 77789999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHh
Q 011365 128 VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 174 (487)
Q Consensus 128 ~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~ 174 (487)
++......+|..+++.+.+.+.+..+|+..+++.++..++..+...+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998889999999888877776544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=128.48 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=133.3
Q ss_pred HHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh
Q 011365 296 FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL 375 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 375 (487)
..........|.+.++.+ .+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 78 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIG----------LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG 78 (379)
T ss_pred HhHHhhhhhhHHHHHHhC----------CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH
Confidence 334444555566654444 6666778888899999999999999999999999999999999988888888
Q ss_pred ccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH-HHHHHHHhhccchhHHHHHHH
Q 011365 376 FQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP-LVAVALVHGCHQTAALILFEL 454 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~i~g~l~~~~g~~~~~~~~~~ 454 (487)
+.++.+...+..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|...+++.++
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (379)
T TIGR00881 79 FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI 158 (379)
T ss_pred HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 8778777788888888888888899999999999999999999999999999999999 466667777788888777776
Q ss_pred HHHHHHHheeeccccC
Q 011365 455 VILLSGISVLLFPFET 470 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~ 470 (487)
+.++..++..+..+|+
T Consensus 159 ~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 159 IAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHheeeCCC
Confidence 6666555555555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=104.57 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=114.7
Q ss_pred hhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCc
Q 011365 333 VFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTS 412 (487)
Q Consensus 333 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 412 (487)
.+...++..++.++.+++.||+|||+.+..+.....++.+.+....+.+......++.+++.+...+....+..|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34456677888999999999999999999888888887777766667666777778888888888899999999999999
Q ss_pred chhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 413 VRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 413 ~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+|+++.++.+....+|..++|.+.+.+.+..++...+++.+.+.++..+...+..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999988888777777777776666665555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=123.68 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=126.7
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.+.+.+.++.+...+..++.+++.+...+...+
T Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 102 (377)
T PRK11102 23 VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINA 102 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666788888899999999999999999999999999999998888888887777777777788888888888889999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|...+++.+++.++..++..+..||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 103 LMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999988988888877777766655555555554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-11 Score=114.09 Aligned_cols=317 Identities=14% Similarity=0.100 Sum_probs=182.5
Q ss_pred hhHHHHHHHH-----H--hhhhHHHHHHHHHHHHHHHHHhhc----hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcC-
Q 011365 53 SFSFSLFGRL-----L--LSFRKGFLITAIVTSAAGLLSAFA----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP- 119 (487)
Q Consensus 53 ~~~~~~~G~~-----r--~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~- 119 (487)
+..-+++|.+ - +.||+-++++.++.+++.+..+.. .+.....+.-++..+|.... ..+.+.+.|...
T Consensus 38 w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~ 117 (433)
T PF03092_consen 38 WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARR 117 (433)
T ss_pred hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 3445667777 3 345666666777776666555543 34666677778888888888 677788888883
Q ss_pred -CCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHH
Q 011365 120 -APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKI 198 (487)
Q Consensus 120 -~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~ 198 (487)
++.||...+.......+|.+++..++|.+.+..+++..|.+.+++.++..+...++.|.... +.+ ++.....++
T Consensus 118 ~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~---~~~-~~~~~~~~~- 192 (433)
T PF03092_consen 118 EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKV---RPA-DEVFSFGKE- 192 (433)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccc---ccc-chhhccccc-
Confidence 34478888899999999999999999999999999999999887777775544444332110 000 000000000
Q ss_pred HhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhCh
Q 011365 199 AKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 278 (487)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (487)
+. +.. ....+.....++..++.
T Consensus 193 --------~~--------------------------------~~~------------------~~~~~~~~~~l~~~~~~ 214 (433)
T PF03092_consen 193 --------EV--------------------------------PCL------------------FGSFREQLSELWRALQQ 214 (433)
T ss_pred --------cc--------------------------------chh------------------hHHHHHHHHHHHHHHhh
Confidence 00 000 00000011144444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH---Hh-hhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh
Q 011365 279 ELIKSTLLLWLVFFGNAFSY---YG-LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL 354 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 354 (487)
+..+...+. ..+...... .+ ..++..+... ..+++....+....+..++.++|..+......+.
T Consensus 215 ~~i~~~~~~--~~~~~~~~~~~~~a~~fy~~~~~~~----------gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~ 282 (433)
T PF03092_consen 215 RAIWQPILF--FIFFFNLPPSISSASSFYFQTDALG----------GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW 282 (433)
T ss_pred hHHHHHHHH--HHHHHHhccCCCCccEEEEEecccc----------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 332222221 111111100 01 0001000000 0012333334444556666666766666666666
Q ss_pred hhhHHHHHHHHHHHHHHHhHh-c---------cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHH
Q 011365 355 GRKLSMSSMFFCCCIFLVPLL-F---------QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSI 424 (487)
Q Consensus 355 g~r~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 424 (487)
.-|+++....++.++..+.-. . .++.+....-.++..+.....+-....+++|+.|+..-|+.+++...+
T Consensus 283 ~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~ 362 (433)
T PF03092_consen 283 SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASF 362 (433)
T ss_pred CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 777777766666554433211 1 111232333344445555555566678899999999999999999999
Q ss_pred HhHhHhHHHHHHHHHHhhcc
Q 011365 425 GRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 425 ~~~g~~~~~~i~g~l~~~~g 444 (487)
.++|..++..++..+.+..+
T Consensus 363 ~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 363 SNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998888766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=120.43 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-hhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 286 LLWLVFFGNAFSYYGLVLLTTE-LNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
..++..+......+....+.|. +.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLG----------LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhC----------CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3445555555666666677775 444443 67777788888999999999999999999999999999999
Q ss_pred HHHHHHHHhHhccC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh-
Q 011365 365 FCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG- 442 (487)
Q Consensus 365 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~- 442 (487)
++.+++.+.+.+.+ +.+...+..++.|++.+ ..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+.
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99988888887776 76666667777777644 4566778899999999999999999988888888888887766653
Q ss_pred ---------ccchhHH-HHHHHHHHHHHHheeecccc
Q 011365 443 ---------CHQTAAL-ILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 443 ---------~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 469 (487)
.+|...+ +..+++..+..++.....++
T Consensus 154 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 154 IFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 3666666 33344433333333333333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=122.63 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=115.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc----CCcchHHHHHHHHHHHHHhhhH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----QPKGLTTGLLFGARICITVTFT 399 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
.+..+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+..... .+.....+..++.+++.+..++
T Consensus 58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 137 (438)
T TIGR00712 58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP 137 (438)
T ss_pred CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence 777777888889999999999999999999999999888888877776665543 2233344555667777777778
Q ss_pred HHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh-hccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 400 VVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH-GCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.....+.|.+|+++|++++|+.+....+|+.++|.+.+...+ ..+|+..+++.+++.++..++.+++.||+
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 888888999999999999999999999999999988876554 46788888887777766655555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=124.40 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=131.0
Q ss_pred HHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhH
Q 011365 295 AFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL 374 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 374 (487)
....+....+.|.+.++.+ .+..+.+...+...++..++.++.|.+.||+|||+.+..+.++.+++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~ 85 (377)
T TIGR00890 16 SGYVYTWTLLAPPLGRYFG----------VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY 85 (377)
T ss_pred hhHHhhhhhHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence 3335556667777776554 666777889999999999999999999999999999999999888888888
Q ss_pred hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHH
Q 011365 375 LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFEL 454 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 454 (487)
.+.++.+...+...+.|++.+..++.......+.+| ++|+++.++......+|..+++.+.+.+.+..+|+..+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 164 (377)
T TIGR00890 86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI 164 (377)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 877777777777778888888777777777888887 5699999999999999998888888888888888888888777
Q ss_pred HHHHHHHheeeccc
Q 011365 455 VILLSGISVLLFPF 468 (487)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (487)
+.++..+..+++.+
T Consensus 165 ~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 165 IFLLVIVLGAFLIG 178 (377)
T ss_pred HHHHHHHHHHHhee
Confidence 77666555544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-12 Score=120.99 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=119.9
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+..+.+...++..++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+...+..++.|++.+...+...+
T Consensus 38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 117 (401)
T PRK11043 38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQA 117 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666788888999999999999999999999999999988888887777777777766666677777777777777788
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
++.|.+|++++++..+..+....++..++|.+.+++.+..||+..+++.+++.++..+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999899999999998999999999999999999999888887777666655554444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=122.24 Aligned_cols=158 Identities=8% Similarity=-0.077 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHH
Q 011365 286 LLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF 365 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 365 (487)
...+..+......+....+.+.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+..
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~ 86 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLKALG----------LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL 86 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHhC----------CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3344444444443333344555554444 677777888999999999999999999999999999998888
Q ss_pred HHHHHHHhHh---cc-CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhH-hHHHHHHHHHH
Q 011365 366 CCCIFLVPLL---FQ-QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGG-MVCPLVAVALV 440 (487)
Q Consensus 366 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~i~g~l~ 440 (487)
+.+++.+... .. .+.+......++.|++.+...+.....+.+.+|+++|++++|+.+....+|. .++|.+.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8777654432 22 3444445556666777666667777788889999999999999999999986 57899999988
Q ss_pred hhccchhHHHHHH
Q 011365 441 HGCHQTAALILFE 453 (487)
Q Consensus 441 ~~~g~~~~~~~~~ 453 (487)
+..|+...++...
T Consensus 167 ~~~g~~~~~~~~~ 179 (402)
T TIGR00897 167 PAFGEMNTLWSAL 179 (402)
T ss_pred cccchHHHHHHHH
Confidence 8888654444333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=123.47 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~ 360 (487)
+.++.++...+...+.+|+...+.+.|..+. .+.+...+......+.....+..+++|+++|| +|||+++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~---------lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ---------LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 5566666677778888888887777776431 12555555566666666666677899999999 9999999
Q ss_pred HHHHHHHHHHHHhHhccCCcc-hHHHHHHHHHHHHHhhhHHHhhhcccccCCc--chhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQPKG-LTTGLLFGARICITVTFTVVYVYAPEIYPTS--VRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
..+.++.+++.+.+.+..+.. ...+...+.+++.+...|...+++.|.+|++ +|+.++++.+...++|..++|.+.|
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999998887777654433 2335566677888888888899999999887 4578999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHH
Q 011365 438 ALVHGCHQTAALILFELVI 456 (487)
Q Consensus 438 ~l~~~~g~~~~~~~~~~~~ 456 (487)
++.++.||+..|++.++..
T Consensus 165 ~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 165 VIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred HHHHhhChHHHHHHHHHHH
Confidence 9999999988877754433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=118.47 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=126.5
Q ss_pred HhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC
Q 011365 299 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 378 (487)
+......|.+.++.+ .+..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+...+.+
T Consensus 26 ~~~~~~lp~i~~~~~----------~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~ 95 (393)
T PRK09705 26 TSVGPLLPQLRQASG----------MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP 95 (393)
T ss_pred hccchhHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 445566777776555 6777778899999999999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-cchhHHHHHHHHHH
Q 011365 379 PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC-HQTAALILFELVIL 457 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~ 457 (487)
+.+...+..++.|++.+...+....++.+.+| ++|+.++|+.......|..+++.+.+++.++. +|+..+..+++..+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV 174 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888899999999888888889999987 67999999999999999999999999988875 67766655544443
Q ss_pred H
Q 011365 458 L 458 (487)
Q Consensus 458 ~ 458 (487)
+
T Consensus 175 ~ 175 (393)
T PRK09705 175 V 175 (393)
T ss_pred H
Confidence 3
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=122.60 Aligned_cols=140 Identities=15% Similarity=0.060 Sum_probs=109.7
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh-----ccCCcchHHHHHHHHHHHHHhhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL-----FQQPKGLTTGLLFGARICITVTF 398 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 398 (487)
.+..+.+...+...++..++.++.|+++||+|||+.+..+.++.+++.+.+. ..++.+...+..++.+++.+...
T Consensus 49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 128 (417)
T PRK10489 49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGV 128 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555668888899999999999999999999999988877666665544332 12334455556666777777777
Q ss_pred HHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhe
Q 011365 399 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISV 463 (487)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 463 (487)
+...+++.|.+|+++|+++.++.+....+|..++|.+.|.+.+..++...+++.++..++..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999998888777776665555544443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=113.98 Aligned_cols=177 Identities=15% Similarity=0.081 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
|.++...+.........+......+.+.+ +.+ .+..+.++..++..++..++++..|++.||+|.|+++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~----------ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~ 103 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFN----------FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 34444444444444444444444444432 222 6777778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcc-----CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQ-----QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
..+.++..+..+...+. ++.+.+.+..++.|++ +..++.....+++.+|+++||+++|+....+++|..+++++
T Consensus 104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 99888888877777654 5666777778888886 66788889999999999999999999977777777766665
Q ss_pred HHHHH-----hhc-------------cchhHHHHHHHHHHHHHHheeecccc
Q 011365 436 AVALV-----HGC-------------HQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 436 ~g~l~-----~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.+.+. +.. +++...++...+.++..++.++..++
T Consensus 183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55433 222 23444455556555555555555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=116.20 Aligned_cols=152 Identities=14% Similarity=-0.060 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+..+.++...+...........+.|.+.++.+ .+..+.++..+...++..++.++.|++.||+|||+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~----------~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~ 75 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEH----------LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY 75 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555566666666666677888876554 66667799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+.++.+++.....+.++.+...+..++.|++.+...+.....+.+..++++|+++++..+....+|..++|.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 76 LASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988888887777777777777888888888888888877777888888999999999999999999999999998876
Q ss_pred hc
Q 011365 442 GC 443 (487)
Q Consensus 442 ~~ 443 (487)
..
T Consensus 156 ~~ 157 (381)
T PRK03633 156 EL 157 (381)
T ss_pred cc
Confidence 53
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-13 Score=124.04 Aligned_cols=152 Identities=13% Similarity=-0.030 Sum_probs=137.4
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+....+++.+...+..++.+++.|++.||++|++++.+|..+-.++.+.-.+....|.+.+.-.+.|++.+...|+..+
T Consensus 65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s 144 (493)
T KOG1330|consen 65 ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS 144 (493)
T ss_pred CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchh
Confidence 66666689999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+++|.+|.++|++.+++.++...+|..+|-..++.+.+..+ |+..+...+++.++++++..++.+|.+++..
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~ 217 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR 217 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccc
Confidence 99999999999999999999999999999888888888777 8888889999999888888888877665433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-12 Score=124.75 Aligned_cols=157 Identities=15% Similarity=0.032 Sum_probs=119.9
Q ss_pred hhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc---
Q 011365 300 GLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--- 376 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--- 376 (487)
.+....|.+.++.+ .+..+.++..+.+.++..++.++.|+++||+|+|+++..+.++.++..+.+..
T Consensus 47 ~~~~~~~~i~~~~~----------~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 116 (467)
T PRK09556 47 NFKAAQNDMISTYG----------LSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG 116 (467)
T ss_pred ChhhhhHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh
Confidence 34444666665544 66666788888899999999999999999999999988877776665554443
Q ss_pred --cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc---cchhHHHH
Q 011365 377 --QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC---HQTAALIL 451 (487)
Q Consensus 377 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~---g~~~~~~~ 451 (487)
.++.+.+.+..++.|++.+...+....++.|.+|+++||+++|+......+|..+++.+..++.+.. +|...+.+
T Consensus 117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~ 196 (467)
T PRK09556 117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIF 196 (467)
T ss_pred cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHH
Confidence 3566667777788888888888999999999999999999999999999999999999887776653 35555555
Q ss_pred HHHHHHHHHHheeec
Q 011365 452 FELVILLSGISVLLF 466 (487)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (487)
.+++.++.+++.+++
T Consensus 197 ~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 197 PSIIALIIGFIGLRY 211 (467)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555544444444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=117.50 Aligned_cols=142 Identities=15% Similarity=-0.022 Sum_probs=108.9
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+....++..+.+.+...+..++.|++.||+|||+++..+..+.+++.+.+.+..+. ....++.|++.+...|...+
T Consensus 35 ~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a 111 (393)
T PRK11195 35 YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYG 111 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444455778888889999999999999999999999999988887766655443332 44556788899999999999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
++.|.+|+++|++++|+.+....++..++|.++|.+.+.. +...+.+.+.+.+++.+ ..+..||.
T Consensus 112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~~ 176 (393)
T PRK11195 112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL-FNLFIPRL 176 (393)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 9999999999999999999999999999999999998864 44444444333333322 23344543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-12 Score=123.27 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=121.7
Q ss_pred CccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc--cCCcchHHHHHHHHHHHHHhhhHH
Q 011365 323 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--QQPKGLTTGLLFGARICITVTFTV 400 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 400 (487)
+.+....+...+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+ ..+.+..++..++.|++.+...+.
T Consensus 72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~ 151 (465)
T TIGR00894 72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA 151 (465)
T ss_pred CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhh
Confidence 345555578888889999999999999999999999999888887777665533 234556667778889999999999
Q ss_pred HhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHheeecccc
Q 011365 401 VYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG-CHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
...++.|.+|+++|++++|+.+....+|..++|.+.+.+.+. .||+..+++.+++.++..++.+.+.++
T Consensus 152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988 499988888877776666555555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=119.62 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=120.3
Q ss_pred HhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC
Q 011365 299 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 378 (487)
+.+..+.|.+.++.+ .+....+...+...++..++.++.|+++||+|||+.++.+.++..+..+...+.+
T Consensus 36 ~~~~~~~~~i~~~~g----------~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQ----------ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS 105 (455)
T ss_pred cchhhhHHHHHHHhC----------cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh
Confidence 334556666665544 6666667777777777788889999999999999999988888888777776666
Q ss_pred CcchHHHHH-HHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHH
Q 011365 379 PKGLTTGLL-FGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVIL 457 (487)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~ 457 (487)
+.+...... ++.|++.+...+....++.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..||...+++.+++.+
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL 184 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 655544333 55677766655666777788886 6799999999999999999999999999999999999988887766
Q ss_pred HHHHheeec
Q 011365 458 LSGISVLLF 466 (487)
Q Consensus 458 ~~~~~~~~~ 466 (487)
++.+..++.
T Consensus 185 ~~~v~~~~~ 193 (455)
T TIGR00892 185 HCCVCGALM 193 (455)
T ss_pred HHHHHHHHh
Confidence 554443333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=117.34 Aligned_cols=164 Identities=19% Similarity=0.116 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
...+......+......|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~ 75 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLG----------LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHH
Confidence 3444455555556666677665444 566666888888999999999999999999999999999999999
Q ss_pred HHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 369 IFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
++.+.....++.+......++.+++.+...+...++..|.+|+++|++.+++.+....+|..++|.+.+.+.+..+++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWL 155 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888877777777778888888888888999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHh
Q 011365 449 LILFELVILLSGIS 462 (487)
Q Consensus 449 ~~~~~~~~~~~~~~ 462 (487)
+++.+++.++..+.
T Consensus 156 ~~~~~~~~~~~~~~ 169 (352)
T cd06174 156 FLILAILGLLLALL 169 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766665555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-12 Score=113.18 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=135.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
....+.++.+....+..++.+++.|.++||+|+|..+++|+.++..+.+++.+.++.+...++-.+-|++.+.......+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 33444588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcc-hhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCC
Q 011365 404 YAPEIYPTSV-RTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 404 ~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
++++.+|+++ |++++|+.-.+..+|..++|.++|.++|..|.+.+|++.++++++...+.++..+.++.
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 9999999865 79999999999999999999999999999999999999999999888877776644433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=115.69 Aligned_cols=129 Identities=11% Similarity=-0.088 Sum_probs=103.5
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh---c-----cCCcchHHHHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL---F-----QQPKGLTTGLLFGARICIT 395 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~ 395 (487)
.+..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.+... . ..+.+...+..++.|++.+
T Consensus 48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 127 (392)
T PRK12382 48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGES 127 (392)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 6777778999999999999999999999999999999888776665433221 1 1233445566677888888
Q ss_pred hhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHH
Q 011365 396 VTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILF 452 (487)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 452 (487)
...+...+++.|.+|+++|++++++......+|..++|.+.+.+.+..||...+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 128 QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 777888888899999999999999999988999999999999998888876544433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=109.76 Aligned_cols=181 Identities=15% Similarity=0.050 Sum_probs=140.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhh
Q 011365 277 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR 356 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 356 (487)
|+...+.+++..+.........+......+.+..+.+ .+.++.+++..+..+.+.+.++..|.+.||+|.
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~----------LS~~q~~ll~aiPil~GallRl~~g~l~drfGg 78 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFG----------LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC----------CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCc
Confidence 3444455555555555555555555555555554444 888888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCcc---hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH
Q 011365 357 KLSMSSMFFCCCIFLVPLLFQQPKG---LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP 433 (487)
Q Consensus 357 r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (487)
|+....+.++..+-.+.+.+....+ .++.+..+.|++ ++.+......+++.+|++++|.++|+.. .+|+|..+..
T Consensus 79 R~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q 156 (417)
T COG2223 79 RKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence 9999999999888777777654443 555555555554 5667888899999999999999999999 9999999999
Q ss_pred HHHHHHHhhcc---chhHHHHHHHHHHHHHHheeecccc
Q 011365 434 LVAVALVHGCH---QTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 434 ~i~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
++.+.+....| |+....+.....++..+..++..++
T Consensus 157 ~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 157 LVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888 7888888877777777776666544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=116.57 Aligned_cols=167 Identities=12% Similarity=-0.066 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhh-ccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELN-NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
+.+....+..+...+.........|.+. ++.+ .+..+.+...+...++..++.++.|+++||+|||+++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLG----------FSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 4444455555555555444444556543 3333 5666678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc---cCC-----cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHH
Q 011365 361 SSMFFCCCIFLVPLLF---QQP-----KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVC 432 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 432 (487)
..+.++.+++.+.... ..+ ....++..++.|++.+...+....+..|.+|+++|+++.++......+|..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 164 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIG 164 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHH
Confidence 9988777665443322 222 22345556778888888888888888999999999999999998889999999
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHH
Q 011365 433 PLVAVALVHGCHQTAALILFELVILL 458 (487)
Q Consensus 433 ~~i~g~l~~~~g~~~~~~~~~~~~~~ 458 (487)
|.+.+.+.+..|+...+++..++.++
T Consensus 165 ~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 165 APLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999988887666555444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=117.84 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~ 359 (487)
+.++..+...+...+.+|....+.+.+.++ .+ .+...+...............+++|++.|| +|||+.
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg----------~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLG----------MSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 345556666677778888888888877632 22 554444444444444444445689999999 599999
Q ss_pred HHHHHHHHHHHHHhHhccCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc--hhHHHHHHHHHHhHhHhHHHHHH
Q 011365 360 MSSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV--RTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
+..+.++.+++..++.+..+ .....+...+.+++.+...+...+++.|.+|++. +..++++.+...++|..++|.+.
T Consensus 91 ~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 99999888888777766433 3334445566777777777888889999998643 45678888999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHH
Q 011365 437 VALVHGCHQTAALILFELVILLS 459 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~ 459 (487)
|++.+..||+..|.+.++...++
T Consensus 171 g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 171 PWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999988887766544443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-11 Score=115.79 Aligned_cols=143 Identities=12% Similarity=-0.022 Sum_probs=106.5
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHH---HhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLL---SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
++.|.+ |+|||+++.++.++..++.+. ...+++...+++++++.|++.+.. .....++.|.+|++.|++++++.
T Consensus 304 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~ 383 (490)
T PRK10642 304 PVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA 383 (490)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHH
Confidence 345555 999999988877654433322 223456778888999999887766 56667888999999999999975
Q ss_pred HHHHHHhHHHHHHHHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhc-----CChHHHHHHHHHHH
Q 011365 131 QTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLK-----GRTAEARHVLEKIA 199 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~-~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~-----~~~~~~~~~~~~~~ 199 (487)
.....++..++|.+.+++.+.. +|+..+++..+++++.++..+++||+|+++.++ ++.+|+++.+++++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 5555566678888888887654 478777777777777777777889999987654 78888888887765
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=113.58 Aligned_cols=147 Identities=16% Similarity=0.002 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHH
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 363 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 363 (487)
++.+...++...+.+.......|.+.++.+ .+..+.+...+...++..++++..|++.||+|||+.+..+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~----------~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g 74 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFT----------LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLG 74 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 344445555555555555556677765544 6666778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhc---cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 364 FFCCCIFLVPLLF---QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 364 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..+.+++.+++.. .++.+......++.|++.+...+..+.++.+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888776543 2455666777788899999999999999999999999999999999999999999999998875
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=112.73 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=110.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS-MFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY 402 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (487)
.+....+...+...+...+..++.|.++||+|||+.+.. +..+..++.++..+.++.+...+..++.+.+.+...|...
T Consensus 30 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~ 109 (375)
T TIGR00899 30 ARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLF 109 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHH
Confidence 566666788888888888899999999999998886554 5555555555566666665555555555666666677778
Q ss_pred hhcccccCCcchhHH--HHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 403 VYAPEIYPTSVRTTG--VGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 403 ~~~~~~~p~~~~~~~--~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
++..|..|++.|+.+ .+.......+|..++|.+.+.+.+..+|+..+++.+.+.++..++.++..||.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 110 ALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred HHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 888888887766654 67778888899999999999999999999888888877766666555545554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=117.33 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred ccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC------cchHHHHHHHHHHHHHhhhHHH
Q 011365 328 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP------KGLTTGLLFGARICITVTFTVV 401 (487)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 401 (487)
..+...+...++.+++.++.|++.||+|||+.+..+.++..++.++.....+ ...+.+..++.|++.+...+..
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 136 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLS 136 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3367788888999999999999999999999999888888877766665433 3456677888899999999999
Q ss_pred hhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 402 YVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 402 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..++.|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus 137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=111.85 Aligned_cols=128 Identities=14% Similarity=0.033 Sum_probs=101.4
Q ss_pred hhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcc--------hHHHHHHHHHHHHHhhhHHHhh
Q 011365 332 DVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--------LTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 332 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
......++..+|.++.|++.||+|||+.+..+.++.+++.+...+.++.. .+.++-++.|++.++.++...+
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 34455566669999999999999999999999999988888877765542 3556677889999999999999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH--------hhccchhHHHHHHHHHHHH
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV--------HGCHQTAALILFELVILLS 459 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~--------~~~g~~~~~~~~~~~~~~~ 459 (487)
++.|.+|+++|+++.++.......|..+++.+.+.+. +..||+..|++.++..++.
T Consensus 148 ~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 148 YMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999888777777777777655443 2568888887766655544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=119.98 Aligned_cols=144 Identities=20% Similarity=0.090 Sum_probs=114.6
Q ss_pred ccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC---cchHHHHHHHHHHHHHhhhHHHh
Q 011365 326 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP---KGLTTGLLFGARICITVTFTVVY 402 (487)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 402 (487)
..+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++.....+ .+..++..++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 455688888999999999999999999999999999888888777766644322 23567777888999899999999
Q ss_pred hhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH---HHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 403 VYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA---VALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 403 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.++.|.+|+++|++++++.+....+|..+++.+. +...+..+|+..+++.+...++..+.. ++.||+
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~l~~~ 219 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPES 219 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCC
Confidence 9999999999999999999999999999999998 655566788877777555444443333 334443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-11 Score=117.15 Aligned_cols=147 Identities=16% Similarity=0.034 Sum_probs=113.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc---------CC---cchHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---------QP---KGLTTGLLFGAR 391 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~ 391 (487)
.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+. .+ ...+++.-++.|
T Consensus 52 ~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 131 (479)
T PRK10077 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGG 131 (479)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHh
Confidence 455556788889999999999999999999999999999888877766655431 11 123455668889
Q ss_pred HHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH--------hhccchhHHHHHHHHHHHHHHhe
Q 011365 392 ICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV--------HGCHQTAALILFELVILLSGISV 463 (487)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~ 463 (487)
++.++..+...+++.|.+|+++|++++++.+....+|..+++.+.+.+. +..||+..+++.++..++..+.
T Consensus 132 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~- 210 (479)
T PRK10077 132 IGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML- 210 (479)
T ss_pred hhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999998999988877765543 3457888887766666555444
Q ss_pred eeccccCC
Q 011365 464 LLFPFETT 471 (487)
Q Consensus 464 ~~~~~~~~ 471 (487)
.++.||+.
T Consensus 211 ~~~l~~s~ 218 (479)
T PRK10077 211 LYFVPETP 218 (479)
T ss_pred HHcCCCCc
Confidence 34456643
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-10 Score=108.67 Aligned_cols=151 Identities=15% Similarity=0.044 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS 359 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 359 (487)
+...+..+.++++...+.........|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~----------~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~ 93 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFT----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3455566666677777777777778888765554 666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhH---hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 360 MSSMFFCCCIFLVPL---LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
+..+..+.+++.+++ ...++.+.+.+..++.|++.+...+..+.++.|..|++++...+++.+....+|..++|.++
T Consensus 94 l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887664 34566677777888999999999999999888887777666789999999999999999988
Q ss_pred HHHH
Q 011365 437 VALV 440 (487)
Q Consensus 437 g~l~ 440 (487)
+.+.
T Consensus 174 ~~l~ 177 (438)
T PRK10133 174 QSLI 177 (438)
T ss_pred HHHH
Confidence 7654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-12 Score=127.35 Aligned_cols=342 Identities=16% Similarity=0.125 Sum_probs=2.9
Q ss_pred hcccccccchhhhHHH----------HHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc------------h---------
Q 011365 42 LNLHFSESDQSSFSFS----------LFGRL--LLSFRKGFLITAIVTSAAGLLSAFA------------P--------- 88 (487)
Q Consensus 42 ~~~~~~~~~~~~~~~~----------~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~------------~--------- 88 (487)
..++++..+.+++.+. ++.++ |..|-|.+-++.++.++|.+++++- .
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 3677777766654422 22222 5566677888999999998876541 0
Q ss_pred -----------------------------hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhH
Q 011365 89 -----------------------------NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT 138 (487)
Q Consensus 89 -----------------------------~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 138 (487)
-+..++++.++.|+|.... +...+|+-|.+++++-+.++|+..+...+|.
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 0245788899999999998 8889999999999999999999999999999
Q ss_pred HHHHHHHHHhhchh----------------------hhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHH
Q 011365 139 ILEAGIAWLVMPRL----------------------GWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLE 196 (487)
Q Consensus 139 ~i~~~~~~~l~~~~----------------------~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~ 196 (487)
++|.++++.+...+ .|-.-|++.+++.++..+..+++|+.-+... +..++.+...+
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~--~~~~~~~~~~~ 268 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTS--ERQEEKESSER 268 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcc--cccchhhhhhc
Confidence 99999988764311 2666677777777776666666665432110 00000000000
Q ss_pred HHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhh
Q 011365 197 KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILL 276 (487)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (487)
+..+.+.+ +.++ .+..+...+.-+.-++.++.++
T Consensus 269 ~~~~~~~~----------------------------------------~~~~------~~~~~~~~~~~~df~~~l~~Ll 302 (539)
T PF03137_consen 269 KEEDSDKD----------------------------------------SFKD------PKSKKSFGKSIKDFPKALKRLL 302 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhh----------------------------------------cccc------cccccchhhhhhhHHHHHHHHh
Confidence 00000000 0000 0000000001111223555666
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhh-hhhcchhHHHHHHHHHhhhh
Q 011365 277 SPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFI-TSFAEFPGLLLAAAMVDRLG 355 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g 355 (487)
++ +.++...+..........++..+.|-|.+. +.+.+...+...... .-.+.++|.+++|++++|++
T Consensus 303 ~N---p~f~~~~la~~~~~~~~~G~~tF~pKylE~---------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 303 TN---PVFMCLILAGVFESFIVSGFATFLPKYLES---------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 66 444555555556666667778888888754 233555555444433 33467789999999999975
Q ss_pred --hhHHHHHHHHHHHHHHHh---Hhc-------------cC--------------------------------------C
Q 011365 356 --RKLSMSSMFFCCCIFLVP---LLF-------------QQ--------------------------------------P 379 (487)
Q Consensus 356 --~r~~~~~~~~~~~~~~~~---~~~-------------~~--------------------------------------~ 379 (487)
.|..+....+...+..+. +.+ .. .
T Consensus 371 l~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~ 450 (539)
T PF03137_consen 371 LSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNK 450 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccc
Confidence 344443333333322221 110 00 0
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHh-HhHhHHHHHHHHHHhhc
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGR-IGGMVCPLVAVALVHGC 443 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~~ 443 (487)
...+.+..++..+..+..........-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|..
T Consensus 451 ~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 451 LIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 01122222233333334445555666788999999999999998876 78899999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=109.90 Aligned_cols=160 Identities=13% Similarity=0.021 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCcccccc-chhhh-----hhhhcchhHHHHHHHHHhhhhhh
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVF-----ITSFAEFPGLLLAAAMVDRLGRK 357 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~g~l~dr~g~r 357 (487)
....++..+........+....|.+.++.+ .+..+. ....+ ...+...++.++.|++.||+|||
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFF----------PAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 344455555555555666677777765543 333222 22211 12233356889999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhccCCcch--------HHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhH
Q 011365 358 LSMSSMFFCCCIFLVPLLFQQPKGL--------TTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGG 429 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 429 (487)
+.+..+..+..++.++..+.++... +.+..++.|++.+...+....++.|.+|+++|++++++.+...++|.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 9999999998888888887766542 35556777888887788888999999999999999999999888888
Q ss_pred hHHHHHHHHHH--------hhccchhHHHHHH
Q 011365 430 MVCPLVAVALV--------HGCHQTAALILFE 453 (487)
Q Consensus 430 ~~~~~i~g~l~--------~~~g~~~~~~~~~ 453 (487)
.+++.+++.+. +..||+..+++.+
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 88888777653 4568887776543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=111.05 Aligned_cols=143 Identities=19% Similarity=0.108 Sum_probs=113.2
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh---c--cCCcchHHHHHHHHHHHHHhhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL---F--QQPKGLTTGLLFGARICITVTF 398 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~ 398 (487)
.++...++......+-.++.++++|.++||++||++++.+-++.++..+.+. . ..+.+.++++.++.+++.....
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3333446666677777788889999999999999999988777655433332 1 2345667777888999999999
Q ss_pred HHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 399 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
|...+.+.|++|+++...++++.+...++...+||.++|.+....|....|.+-++..++........
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999888877777766665554444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-10 Score=104.69 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=126.5
Q ss_pred hhhhhhhhhccccccccccccCCccccc-cchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC
Q 011365 301 LVLLTTELNNGQNKCVSNELQSGKSRDI-NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
..+..|.+.++.| .+..+ .+.....+..+..+..+.+|++.||+|.|+++..+.+...+..+++.+..+
T Consensus 45 ~s~a~p~L~~elg----------lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 45 ESFITPYLLTVLN----------FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred HHHHHHHHHHHcC----------CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566655544 77777 688999999999999999999999999999999999999999888888878
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHH---HHHHHH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI---LFELVI 456 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~---~~~~~~ 456 (487)
...+.+.-++.|++.+... ....++...+|+++|+++.|+.+....+|.++++++.++ ...+||..... +..+..
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Confidence 8888888999999999998 999999999999999999999999999999999999998 55667654332 333333
Q ss_pred HHHHHheeecc
Q 011365 457 LLSGISVLLFP 467 (487)
Q Consensus 457 ~~~~~~~~~~~ 467 (487)
.++.++.++++
T Consensus 193 ~~a~~~a~~LP 203 (511)
T TIGR00806 193 TFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHhCC
Confidence 44444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-10 Score=109.37 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=113.4
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
.......|.+..+.+.+.++.+ .+..+.+....+.. ......++.|++.||+|+|+++.++.++..++.
T Consensus 37 ~~~~g~~y~fsv~s~~L~~~lg----------ls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ 105 (591)
T PTZ00207 37 SICTSFMYAFNLISGAMQARYN----------LTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGT 105 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----------cCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3344455677777787765554 55544444444422 223455678999999999999999999999988
Q ss_pred HhHhcc------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccc
Q 011365 372 VPLLFQ------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQ 445 (487)
Q Consensus 372 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~ 445 (487)
++..+. .+.+.+.+..++.|++.+...+.....+.+.+| ++||++.|+......+|+++.+.+...+.. .++
T Consensus 106 ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~ 183 (591)
T PTZ00207 106 LLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNT 183 (591)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhH
Confidence 877764 355566666777788877777777888888997 679999999999999999765444443433 244
Q ss_pred hhHHHHHHHHHHHHHHheeeccc
Q 011365 446 TAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
...+++.+++.++..++.+.+.+
T Consensus 184 ~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 184 SAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 55566666666655555555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-11 Score=104.73 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=101.5
Q ss_pred cccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhh
Q 011365 325 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY 404 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (487)
+...++...+.+++...+.+..+|.++||+|||.++..|.+..++..+++....+...+...-++.|++.+ ...+..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 33445788888999999999999999999999999999999999998888888776333333566665544 44778899
Q ss_pred cccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh---hccch
Q 011365 405 APEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH---GCHQT 446 (487)
Q Consensus 405 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~---~~g~~ 446 (487)
++|.+++++|+.+++.++....+|.++||.++|++.. ..|.+
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~ 189 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSY 189 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccC
Confidence 9999999999999999999999999999999999987 45544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-09 Score=94.55 Aligned_cols=146 Identities=18% Similarity=0.132 Sum_probs=96.5
Q ss_pred ccCccccchhcccccccchhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HH
Q 011365 33 ELSWNTTTLLNLHFSESDQSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PV 109 (487)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 109 (487)
.+++....+..+.......+++.+++.|.+ |+|||+..++..++.+++++.. ..++++.++++|++.|++.... .+
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH
Confidence 345554555555555555566777888888 9999999999999999999654 4589999999999999999998 66
Q ss_pred HHHHH-HhhcCCCCc----hhHHHHHH-HHHHHhHHHHHHHHHHhhchhhh--HHHHHHhHHHHHHHHHH-HHhcCCCc
Q 011365 110 LASWF-LEFIPAPNR----GFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGW--RWLLGLSAFPSSLLLLL-YSVTPESP 179 (487)
Q Consensus 110 ~~~~i-~~~~~~~~r----~~~~~~~~-~~~~lG~~i~~~~~~~l~~~~~w--~~~f~~~~~~~~i~~~~-~~~l~e~p 179 (487)
--+++ .|.-..+.+ +..++... ...++-.+++..++.++.+..+. ..+|....++.++..+. ...-+|++
T Consensus 142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 66765 465432222 22233233 23344455556666666665544 77888877777666443 33345543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.5e-11 Score=116.79 Aligned_cols=141 Identities=16% Similarity=0.033 Sum_probs=117.9
Q ss_pred ccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhc
Q 011365 326 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA 405 (487)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (487)
....++..++..++.+++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+.+..++.|++.+...+...+++
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~ 205 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLN 205 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHh
Confidence 44457888899999999999999999999999999999999888888888888888888888999999999999999999
Q ss_pred ccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 406 PEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 406 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.|.+|+++|+.+.++......+|.+++|.+.+.+.+ |...+++.++..++..+.. ++.||+
T Consensus 206 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred heecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 999999999999999988888999998888766544 6667776666665555444 444553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=107.01 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=100.9
Q ss_pred hhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcc--------hHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 335 ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--------LTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 335 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
+..++..+|.++.|++.||+|||+.+..+.++.+++.++..+.++.. .....-++.|++.++.++....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 34455678889999999999999999999999999888888877754 3555677889999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh--------hccchhHHHHHHHHHHH
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH--------GCHQTAALILFELVILL 458 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~--------~~g~~~~~~~~~~~~~~ 458 (487)
|.+|+++|+...+..+....+|..+++.+.+.+.. ..||+..+++.++..++
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999988888888888777766543 46888888766555433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=115.21 Aligned_cols=143 Identities=13% Similarity=0.010 Sum_probs=115.7
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC-------------------------
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ------------------------- 378 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------------------------- 378 (487)
.+..+.+++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.+++...+
T Consensus 65 lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~ 144 (633)
T TIGR00805 65 LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFL 144 (633)
T ss_pred CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccc
Confidence 7777778899999999999999999999999999999999888888877765431
Q ss_pred --------------------------CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHH
Q 011365 379 --------------------------PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVC 432 (487)
Q Consensus 379 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 432 (487)
....+++.-++.|++.+..++...+++.|.+|+++|+...|+.+....+|..++
T Consensus 145 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG 224 (633)
T TIGR00805 145 CMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFG 224 (633)
T ss_pred ccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHH
Confidence 122345677888889889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----------------------cchhHHHHHHHHHHHHHHheeec
Q 011365 433 PLVAVALVHGC----------------------HQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 433 ~~i~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
+.+++++.+.. +|+..|++.+++.++.++..+++
T Consensus 225 ~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 225 YLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988643 14555666666666555444444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=108.49 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=101.6
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch----hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~ 128 (487)
..+.|.+ |+|+|+++.++.++.+++..+..... +++.+++.+++.|++.+.. +....++.|++|+++|+++.|
T Consensus 268 ~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g 347 (418)
T TIGR00889 268 ILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG 347 (418)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3445555 99999999999999988877666632 3466778899999999887 777789999999999999999
Q ss_pred HHH-HHHHHhHHHHHHHHHHhhch------hhhHHHHHHhHHHHHHH-HHHHHhcCCCc
Q 011365 129 IFQ-TFWTVGTILEAGIAWLVMPR------LGWRWLLGLSAFPSSLL-LLLYSVTPESP 179 (487)
Q Consensus 129 ~~~-~~~~lG~~i~~~~~~~l~~~------~~w~~~f~~~~~~~~i~-~~~~~~l~e~p 179 (487)
+.+ ...++|.++||.+++++.+. +||+..|.+.+++.++. ++..++++|+.
T Consensus 348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 997 67899999999999999886 46999999888887776 44556667653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=103.96 Aligned_cols=180 Identities=10% Similarity=-0.004 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHh----hhhhh
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD----RLGRK 357 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r 357 (487)
++.+.+....++..+.+.....+.+.+.++.+ .+....+....+..+..++..++.|+++| |+|||
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg----------~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR 73 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELG----------IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence 34444555555555655555556666665554 66666688888889999999999999999 59999
Q ss_pred HHHHHH-HHHHHHHHHhHhccCCc-----------------chHHHHHHHHHHHHHhhhHHHhhhcccccCCcch--hHH
Q 011365 358 LSMSSM-FFCCCIFLVPLLFQQPK-----------------GLTTGLLFGARICITVTFTVVYVYAPEIYPTSVR--TTG 417 (487)
Q Consensus 358 ~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~ 417 (487)
+.++.. ....+++++++.+..+. +..+....+..++.....+...+++.|.+|+++| +.+
T Consensus 74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a 153 (477)
T TIGR01301 74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIA 153 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHH
Confidence 987764 55555565665554331 1122233344556666777889999999998865 679
Q ss_pred HHHHHHHHhHhHhHHHHHHHHH--Hhhc-------------cchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 418 VGVASSIGRIGGMVCPLVAVAL--VHGC-------------HQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 418 ~g~~~~~~~~g~~~~~~i~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
+++.+...++|+.+++.+.+.. .+.+ +....|++.+++.+++..+..+..+|..
T Consensus 154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9999999999999999998864 2221 2345667777777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=104.49 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=97.2
Q ss_pred ccccccchhhhhhhh-cchhHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHH
Q 011365 324 KSRDINYGDVFITSF-AEFPGLLLAAAMVDRLGRKLSM-SSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVV 401 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (487)
.+..+.+...+...+ +...+.+.+++ .||+|||+.+ ..+.+...+....+.+.++.+.+.+...+.+.......|..
T Consensus 48 ~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 126 (393)
T PRK15011 48 ARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQM 126 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555555666554444 45555555666 9999998765 44555545555555555555544333334444445566777
Q ss_pred hhhcccccCCcch--hHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 402 YVYAPEIYPTSVR--TTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 402 ~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
..+..+..+++.| +...++.+....+|..++|.+.+.+.+..||+..++..++..++..+..++..||.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 127 FALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 7777776665544 344578888889999999999999999999998888877776666665555556543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=105.04 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=110.9
Q ss_pred cccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 327 DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
+...++.....++..++.++.|.++|.+|||..++.+.++..++.++....++...++....+.|++.+... .....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 344567777788888999999999999999999999999999999999988888888888888888865554 4566689
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeec
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
|..|.+.|..+.++.....-.....+|.+...+..+.+|++.+++.++...++.+...++
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777765555556777777766666789998888877766655444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=104.51 Aligned_cols=170 Identities=14% Similarity=0.052 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-----hhhH-HHH
Q 011365 288 WLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-----GRKL-SMS 361 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~ 361 (487)
+..++.+...+.....-+|.++++.| .+.++.+....+... .+..+++|+++||+ |||+ .+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g----------~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~ 72 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEG----------LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLL 72 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHH
Confidence 34555666666666677788887766 777777666554443 57889999999999 7765 677
Q ss_pred HHHHHHHHHHHhHhccC---CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHH
Q 011365 362 SMFFCCCIFLVPLLFQQ---PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVA 438 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 438 (487)
.+.++.+++...+.+.. +.+.+....++.+++.....+...+++.|.+|+++|+++.++......+|..+++.+.+.
T Consensus 73 ~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 73 LTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77777776666665542 233344444555677777788999999999999999999999999989999999999999
Q ss_pred HHhh-ccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 439 LVHG-CHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 439 l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+.+. .||...+++.+++.++..... +..||+
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 9885 488888888777666554433 334444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=106.66 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-----hh
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-----GR 356 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~ 356 (487)
|+....+...+......+......|.+.++.+ .+..+.+... ..+.. .++.++++.++||+ ||
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g----------~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVEN----------IDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCC
Confidence 34445555556666666666666677765444 4444444332 22222 25789999999999 98
Q ss_pred hHH-HHHHHHHHHHHHHhHhccC---CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHH
Q 011365 357 KLS-MSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVC 432 (487)
Q Consensus 357 r~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 432 (487)
|+. +..+.+..+++...+.+.+ +.+......++.+++.+...+...++..|.+|+++|+++.++......+|..++
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 875 5566666666665555432 334455556677777888888899999999999999999999999999999999
Q ss_pred HHHHHHHHh-hccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 433 PLVAVALVH-GCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 433 ~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+.+.+++.+ ..||+..+++.+++.++..+..++ .||+
T Consensus 160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~ 197 (491)
T PRK11010 160 GGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEP 197 (491)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 999999998 468999988888776665544433 4554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=118.98 Aligned_cols=121 Identities=10% Similarity=-0.024 Sum_probs=97.5
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF---CCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
++..+++.+..++..+++|+++||+|||+++..... +.....+......+.+.++++.++.|++.+...|...+++.
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~ 134 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILP 134 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhH
Confidence 556667778888899999999999999987533222 11222122223366777888889999999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHH
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI 450 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~ 450 (487)
+.+|++++++++|+.++...+|..++|.++|++.+..+|...++
T Consensus 135 ~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 135 DHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999888876663
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=118.66 Aligned_cols=113 Identities=8% Similarity=-0.042 Sum_probs=95.3
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHh---ccCCcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL---FQQPKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
++..+++.++.+++.+++|+++||+|||+++..+.++.++..++.. ...+.+.+++..++.|++.+...+...+++.
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 129 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIP 129 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhH
Confidence 5666777888889999999999999999999887766554443322 3345666777778889999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
|.+|+++|++++|+......+|.+++|.+++++.+.
T Consensus 130 ~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 130 ELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999876
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=103.15 Aligned_cols=145 Identities=19% Similarity=0.090 Sum_probs=104.2
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhh-----hhhHHH-HHHHHHHHHHHHhHhccCC---cchHHHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRL-----GRKLSM-SSMFFCCCIFLVPLLFQQP---KGLTTGLLFGARICI 394 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 394 (487)
.+..+.+..... .+...+ .++.|+++||+ |||+.+ ..+.++.++....+.+..+ .+......++.+++.
T Consensus 20 ~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~ 97 (356)
T TIGR00901 20 VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFS 97 (356)
T ss_pred CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 565555555433 333333 78999999998 788864 5566666666555555432 223344444556666
Q ss_pred HhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHHHheeec
Q 011365 395 TVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH--------QTAALILFELVILLSGISVLLF 466 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g--------~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
+...+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+ |...+++.+++.++......+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 67778889999999999999999999999999999999999999998888 8888887777766655554444
Q ss_pred cccC
Q 011365 467 PFET 470 (487)
Q Consensus 467 ~~~~ 470 (487)
.||.
T Consensus 178 ~~e~ 181 (356)
T TIGR00901 178 AKEP 181 (356)
T ss_pred ccCC
Confidence 4554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=102.81 Aligned_cols=143 Identities=13% Similarity=-0.006 Sum_probs=110.4
Q ss_pred hhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcc
Q 011365 302 VLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG 381 (487)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 381 (487)
....|.+.++.+ .+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++.+.. ..++.+
T Consensus 20 ~~~lp~l~~~~~----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 20 GPLLPQIRSALG----------MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred cccHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 345566665544 677777889999999999999999999999999999998887777666555 445555
Q ss_pred hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc--chhHHHHHHHHH
Q 011365 382 LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH--QTAALILFELVI 456 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~ 456 (487)
...+..++.+++.+...+.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..+...+++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55666677777777777777778888886 579999999999999999999999998887653 555555444433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=106.42 Aligned_cols=150 Identities=14% Similarity=0.058 Sum_probs=131.1
Q ss_pred cCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc--CCcchHHHHHHHHHHHHHhhh
Q 011365 321 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--QPKGLTTGLLFGARICITVTF 398 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 398 (487)
+...+..+.+.+.+....+.+++.+..|++.||+|.|+++..+.++.+++.++.... .+.+.+++.-++.|++.+..+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 344556666888999999999999999999999999999999999999888777643 344566788899999999999
Q ss_pred HHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 399 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG-CHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
|....+..+..|+++|++..++......+|.+++-++.|++.+. .||...|++.+++.++..++.+++..+.
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998 9999999999999988877766665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=105.88 Aligned_cols=125 Identities=9% Similarity=0.015 Sum_probs=103.6
Q ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH-H
Q 011365 55 SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI-F 130 (487)
Q Consensus 55 ~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~-~ 130 (487)
+..+.|.+ |+|+|+.+.++.++.+++.++.+++++.+.+++.+++.|++.+.. +....++.|.+|++.|+...+. .
T Consensus 278 ~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 357 (420)
T PRK09528 278 IMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGF 357 (420)
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehH
Confidence 34455666 999999999999999999999999999999999999999988887 6667889999999999887655 5
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhcCCCc
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL-LLYSVTPESP 179 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~-~~~~~l~e~p 179 (487)
+....+|.++++.+.+++.+..||+..|.+.+++.++.. +....++++|
T Consensus 358 ~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 358 QFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 677889999999999999999999999999888777664 4444444443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.9e-08 Score=90.28 Aligned_cols=85 Identities=21% Similarity=0.197 Sum_probs=72.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE 141 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~ 141 (487)
+.|.|+.++++......-.+.+.+ +|-+.++++..+.|+|.+.. ..-..+++|..+++++.+..++.-+....+.++|
T Consensus 76 ~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 76 FLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred HhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhh
Confidence 899999999999998887776665 56777888999999999988 4555899999999999999999999999998888
Q ss_pred HHHHHHh
Q 011365 142 AGIAWLV 148 (487)
Q Consensus 142 ~~~~~~l 148 (487)
..+-..+
T Consensus 155 gi~l~~~ 161 (461)
T KOG3098|consen 155 GIILFIY 161 (461)
T ss_pred hHhheee
Confidence 7665443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=102.57 Aligned_cols=174 Identities=14% Similarity=0.048 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHH
Q 011365 284 TLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 363 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 363 (487)
++......+...........+.|.+..+. .+.+..+.+...+...+...++.++.|+++||+|||+.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDV---------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33444444444444444444555554321 126666778899999999999999999999999999998776
Q ss_pred HHHHHHHHHhH---hccCC-----cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 364 FFCCCIFLVPL---LFQQP-----KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 364 ~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
....++..... ...+. .....+..++.+++.+...+....+..+..+ .++..+|.......+|..++|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~ 152 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASI 152 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHH
Confidence 55554433221 11110 1111222344455555556666666655433 24567788888889999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 436 AVALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 436 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.|.+.+ .+++..+++.+++.++..++.+...++
T Consensus 153 ~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 153 AGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred Hhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998766 478888877777666655544443333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=100.72 Aligned_cols=183 Identities=16% Similarity=0.115 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSM 360 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~ 360 (487)
|.+..++..-+.--++||++...+..|+...- .. ..+++.+++......++...-+..+++||++|| +|+|+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~----~~-gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQL----GD-GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----cc-cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 55556666667777888887776665553211 00 022556666555555555556677899999999 5999999
Q ss_pred HHHHHHHHHHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCc--chhHHHHHHHHHHhHhHhHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTS--VRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
..+.++.+++-+++.... ....+.+.+.+..++.+..=+...+++.|.+|++ +|-.++++..+..++|++++|.+.
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 999999999999988773 5666777788888999999999999999999863 477788888999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 437 VALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+++.+..|+...|-..++-+.++.+..++..|.
T Consensus 176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 999999998877777777666666655555433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=108.51 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=121.7
Q ss_pred cccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 327 DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
.......+++.++.++|.++.|.++||+|||+++..+.++..++.+...+.++.+...+.-++.|++.++.......+..
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence 33467778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
|.+++++|+.+..+ ......++.++|...+++.. +|+..++...+..++..++ +++.+|.
T Consensus 198 E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 198 EIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred eecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 99999999999999 88888899999999998887 6777777766666655554 4444454
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=99.41 Aligned_cols=155 Identities=13% Similarity=0.035 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHH-HH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF-CC 367 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~ 367 (487)
+.++.....+....-+.|.+.++.| .+..+.+...+...+...++.++.+.++||+||+........ ..
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g----------~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIG----------LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344444444444556677776555 777777888889899999999999999999998543322211 11
Q ss_pred HHHHH-hHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccch
Q 011365 368 CIFLV-PLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQT 446 (487)
Q Consensus 368 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~ 446 (487)
.+..+ .....++.+...+...+.+.+.+...|...++..+. .++|++++|.......+|..++|.+.|.+.+..||.
T Consensus 81 ~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~ 158 (382)
T TIGR00902 81 AIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ 158 (382)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 11212 222345566565666666777766778877776653 467899999999999999999999999999999998
Q ss_pred hHHHHHHHH
Q 011365 447 AALILFELV 455 (487)
Q Consensus 447 ~~~~~~~~~ 455 (487)
..+.....+
T Consensus 159 ~~f~~~~~~ 167 (382)
T TIGR00902 159 NILAILTAG 167 (382)
T ss_pred HHHHHHHHH
Confidence 877766544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-09 Score=99.03 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=105.6
Q ss_pred HHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhH----HHHHHHHHHHHHH
Q 011365 296 FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL----SMSSMFFCCCIFL 371 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~----~~~~~~~~~~~~~ 371 (487)
........++|.+.++.+ .+..+.+...+...+...++.++.|.+.||+||+. .+.+...+ ...
T Consensus 18 ~~~g~~~p~l~~~l~~~g----------~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~ 85 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQG----------YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAV 85 (382)
T ss_pred HHHHHHhhhHHHHHHhcC----------CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHH
Confidence 333344445566665554 77777788999999999999999999999999842 22222111 112
Q ss_pred HhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHH
Q 011365 372 VPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALIL 451 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 451 (487)
......++.+...+..++.+++.+...|...++..+. .++|+++++.....+.+|..++|.++|++.++.||+..++.
T Consensus 86 ~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 86 AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 2222345556666666667777777777777776655 34578888999999999999999999999999999988876
Q ss_pred HHHHHHHHH
Q 011365 452 FELVILLSG 460 (487)
Q Consensus 452 ~~~~~~~~~ 460 (487)
.++..++..
T Consensus 164 ~~~~~~~~~ 172 (382)
T PRK11128 164 LTAGVASML 172 (382)
T ss_pred HHHHHHHHH
Confidence 665444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-08 Score=92.48 Aligned_cols=136 Identities=13% Similarity=0.148 Sum_probs=121.2
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhccccc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIY 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (487)
+......-.+.++.-++.+++++|+|+-+++..++.+..+=++.+.+.+++|....+-++-++..+..+....++++...
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va 488 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA 488 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666777788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHH-hHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheee
Q 011365 410 PTSVRTTGVGVASSIG-RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 410 p~~~~~~~~g~~~~~~-~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
|++.++++.++..... .+|-.+|++|+|.+.+.+|....|.++++.+++.+++...
T Consensus 489 Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 489 PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred CCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 5999999999999999999888888888777665554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=80.57 Aligned_cols=303 Identities=15% Similarity=0.108 Sum_probs=165.6
Q ss_pred ccccCccccchhcccccccchhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-
Q 011365 31 VPELSWNTTTLLNLHFSESDQSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG- 107 (487)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~- 107 (487)
+..+++....++.+.......+.+.+.+.|.+ +-|||+..+.-.+.+.++++ .-.+|+|-.++++|.+-|++.+..
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence 34556666666666666555666667777777 99999987776666655443 445789999999999999999988
Q ss_pred HHHHHH-HHhhcCCCCchhHHHHH--------HHHHHHhHHHHHHHHHHhhchhh--hHHHHHHhHHHHHHHHHHHHhcC
Q 011365 108 PVLASW-FLEFIPAPNRGFWMVIF--------QTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYSVTP 176 (487)
Q Consensus 108 ~~~~~~-i~~~~~~~~r~~~~~~~--------~~~~~lG~~i~~~~~~~l~~~~~--w~~~f~~~~~~~~i~~~~~~~l~ 176 (487)
..--++ +.|..+++ +.---+. ..+.++-.+++.+.+..+.+.++ --.+|-..+.+..+. ....+.
T Consensus 143 SaFEsWliaEHnekr--~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig--mAvil~ 218 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKR--GFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG--MAVILS 218 (454)
T ss_pred HHHHHHHHHHhhhcc--CChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH--HHHHHh
Confidence 666565 56766433 2221111 12333444455555555555433 333443322222222 111111
Q ss_pred CCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhccccc
Q 011365 177 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED 256 (487)
Q Consensus 177 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (487)
.|-+.-+++.+.+..+...+.
T Consensus 219 ---~W~ENygdps~~kdlltqf~g-------------------------------------------------------- 239 (454)
T KOG4332|consen 219 ---SWSENYGDPSENKDLLTQFKG-------------------------------------------------------- 239 (454)
T ss_pred ---hhhhccCChhhhHHHHHHhhH--------------------------------------------------------
Confidence 133333444444433333221
Q ss_pred chhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCcccccc-chhhhh
Q 011365 257 STSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN-YGDVFI 335 (487)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 335 (487)
..+.+.+++ +..++..+-...-...|.....|.|.+.- .+.+.. +.++.-
T Consensus 240 --------------aa~aiaSD~--ki~LLG~iqsLFE~smytFVFLWTPaLsp-------------n~e~iPhGfiFat 290 (454)
T KOG4332|consen 240 --------------AARAIASDE--KIALLGAIQSLFEGSMYTFVFLWTPALSP-------------NDEEIPHGFIFAT 290 (454)
T ss_pred --------------hHHHHhcch--HHHHHHHHHHHHhhhhheeeeeecccCCC-------------CcccCCchhHHHH
Confidence 112222221 22222222333334444455667777531 112222 667777
Q ss_pred hhhcchhHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhHhc----cC---CcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 336 TSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLF----QQ---PKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 336 ~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
+.+..++|+-+..++..|-..| ..+.+.+.+.++.+.+... .+ ++....+..+++-.+.+..+|...-+-.
T Consensus 291 FMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRs 370 (454)
T KOG4332|consen 291 FMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRS 370 (454)
T ss_pred HHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 7777777877777776664443 3444444444443333221 11 1223344555566677888899999999
Q ss_pred cccCCcchhHHHHHHHHHHh
Q 011365 407 EIYPTSVRTTGVGVASSIGR 426 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~ 426 (487)
+..|.+.|++.+-++..--+
T Consensus 371 qyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 371 QYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred hhCCHHHHhhhhhheechhh
Confidence 99999999877766544433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=91.10 Aligned_cols=147 Identities=17% Similarity=0.092 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
..+...++...+.........|.+.+... .+..+++.....+..+..+.++..+++.+|+|+|+.++.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~----------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL 85 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFD----------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL 85 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhC----------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence 33444445555555555566676654433 66777788888888999999999999999999999999999
Q ss_pred HHHHHHHHhHh---ccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 365 FCCCIFLVPLL---FQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 365 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.++++++.++. ...+...+...+++.+.+.+...+..+.++..+.|++..+.-+.+...++.+|.+++|++++.+..
T Consensus 86 ~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 86 LLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999988886 334455667778889999999999999999999999888899999999999999999999999887
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=101.86 Aligned_cols=139 Identities=19% Similarity=0.089 Sum_probs=119.7
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhccccc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIY 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (487)
++..+...++..++.++.|+++|++|||+.+..+.+...++.++..+..+...+.+.-++.|++.++...+...+++|..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia 171 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHheeeccccC
Q 011365 410 PTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC--HQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 410 p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
|++.||...+..+....+|..++ .+.+...+.. +|+..+.+..+.+++..+. .++.||+
T Consensus 172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999999999999988887777 5566665543 6776666666666666666 5565654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=99.50 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=95.9
Q ss_pred hhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcc--------hHHHHHHHHHHHHHhhhHHHhhhcccc
Q 011365 337 SFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--------LTTGLLFGARICITVTFTVVYVYAPEI 408 (487)
Q Consensus 337 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (487)
.+...++.++.|+++||+|||+.+..+.++..++.++..+.++.. ...+..++.|++.+...+....++.|.
T Consensus 45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 124 (394)
T TIGR00883 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY 124 (394)
T ss_pred HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence 344457889999999999999999999999888888777766543 244455677777777788888999999
Q ss_pred cCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH--------hhccchhHHHHHHHHHHHH
Q 011365 409 YPTSVRTTGVGVASSIGRIGGMVCPLVAVALV--------HGCHQTAALILFELVILLS 459 (487)
Q Consensus 409 ~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~--------~~~g~~~~~~~~~~~~~~~ 459 (487)
+|+++|++..++.+....+|..+++.+.+.+. +..+|+..+++.+++.+++
T Consensus 125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG 183 (394)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877654 2456666666555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=88.02 Aligned_cols=302 Identities=20% Similarity=0.183 Sum_probs=158.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE 141 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~ 141 (487)
|+..+.=+.+..+++.+|.++.+++++.+.=+++-.+.+++.|.. .....+ +..+++ ...+-+..+.+.+.++|
T Consensus 85 ~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssGTG~aGl~G 159 (402)
T PF02487_consen 85 RVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSGTGGAGLVG 159 (402)
T ss_pred hccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCCcChhhHHH
Confidence 444333345556677888999999999999999999999999988 544454 445554 34677777788788888
Q ss_pred HHHHHHhhc-hhhhHHHHHHhHHHHHHHHHHHHh-cCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhh
Q 011365 142 AGIAWLVMP-RLGWRWLLGLSAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 219 (487)
Q Consensus 142 ~~~~~~l~~-~~~w~~~f~~~~~~~~i~~~~~~~-l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
+..-..+.. ..+-|..+++...+.++..+.+++ +|+++... ..++.++ .. +
T Consensus 160 a~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~-~~~~~~~-~~------------------------~- 212 (402)
T PF02487_consen 160 ALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNR-PYQESES-ED------------------------E- 212 (402)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCcccCC-CC------------------------c-
Confidence 776555544 234577887777766666544444 44332100 0000000 00 0
Q ss_pred hhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhC--hHHHHHHHHHHHHHHHHHHH
Q 011365 220 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS--PELIKSTLLLWLVFFGNAFS 297 (487)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 297 (487)
.+++....+ ..+.+. +.. ...++++-++ ++..+..+-+.+.++.-...
T Consensus 213 ----------~~~~~~~~~--~~~~~~---------------~~~---~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 213 ----------AEDDLLESE--TSESKP---------------DSS---SKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred ----------ccccccccc--cccccc---------------ccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 000 0001111111 11122222233333333333
Q ss_pred HHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh---H
Q 011365 298 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP---L 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~---~ 374 (487)
..++. |...... ......+.-.+....+.++..+++--...+ |+.+.+++.+..++..+.++. +
T Consensus 263 nqGv~---~tl~fp~--------~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~ 329 (402)
T PF02487_consen 263 NQGVA---PTLLFPN--------SFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWY 329 (402)
T ss_pred HhchH---HHhcCCc--------cCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222100 001122222455556666665554332221 333333332222222222221 1
Q ss_pred hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 375 LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
.+.++.+...+.++..|+..|..+...+..+.|..|+++|..++|.....-.+|..++..++-++
T Consensus 330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23456677777888889998999999999999999999999999999999888888887766443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=92.32 Aligned_cols=149 Identities=14% Similarity=0.033 Sum_probs=126.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
...++.+...+++.++.+++.+.++.+.||++..+.+....++..+..++-....+.+.+++.-++.|++.++.+|....
T Consensus 78 ~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~ 157 (495)
T KOG2533|consen 78 LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVA 157 (495)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHH
Confidence 34444578888999999999999999999999777766666665555544445678888899999999999999999999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH------hhccchhHHHHHHHHHHHHHHheeeccccCCC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALV------HGCHQTAALILFELVILLSGISVLLFPFETTG 472 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
++...+.+++|+.-+|+.+....+|+++++++...+. ...||++.|++-+++.++.+++++++.|+...
T Consensus 158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999999999998764 35679999999999999999888888876544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.3e-08 Score=95.24 Aligned_cols=148 Identities=14% Similarity=0.039 Sum_probs=103.1
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHhHhccCCc------chHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKL-SMSSMFFCCCIFLVPLLFQQPK------GLTTGLLFGARI 392 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 392 (487)
.+....+...++..+...+..++.|+++|| +|||| .+..+....+++.+++...++. .......++.+.
T Consensus 32 ~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (437)
T TIGR00792 32 LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGL 111 (437)
T ss_pred CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 667777888889999999999999999998 56654 4566666666666655544332 122223344555
Q ss_pred HHHhhhHHHhhhccccc-CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh-------hccchhHHHHHHHHHHHHHHhee
Q 011365 393 CITVTFTVVYVYAPEIY-PTSVRTTGVGVASSIGRIGGMVCPLVAVALVH-------GCHQTAALILFELVILLSGISVL 464 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-------~~g~~~~~~~~~~~~~~~~~~~~ 464 (487)
+.+...+...++..|.. ++++|++..++.+....+|..+++.+.+.+.. ..+|...+.+.+++.++..++..
T Consensus 112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 191 (437)
T TIGR00792 112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF 191 (437)
T ss_pred HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55665666778888887 45789999999999888988888777766654 33566666777776666666555
Q ss_pred eccccCC
Q 011365 465 LFPFETT 471 (487)
Q Consensus 465 ~~~~~~~ 471 (487)
+..||++
T Consensus 192 ~~~~e~~ 198 (437)
T TIGR00792 192 FGTKERY 198 (437)
T ss_pred cCCEecC
Confidence 5556654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=91.70 Aligned_cols=145 Identities=19% Similarity=0.194 Sum_probs=114.9
Q ss_pred ccCccccchhcccccccchhhhHHHHHHHH--Hhhhh--HHHHHHHHHHHHHHHHHhh--------chhHHHHHHHHHHH
Q 011365 33 ELSWNTTTLLNLHFSESDQSSFSFSLFGRL--LLSFR--KGFLITAIVTSAAGLLSAF--------APNYYLLLFFRCLV 100 (487)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--r~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~ 100 (487)
.+++....+..+.+.......+++.++|.+ |+|.| +++..+.+++.+..+...+ .++-+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 445544444344444444455666677777 99999 8998888888665555444 56788899999999
Q ss_pred hhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhh-hHHHHHHhHHHHHHHHHHHHhcCC
Q 011365 101 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSVTPE 177 (487)
Q Consensus 101 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~-w~~~f~~~~~~~~i~~~~~~~l~e 177 (487)
|+..|.. +..-++++|..|+++.+..+|++....-....+||++.+.+.+..| -|..+....++.++.+++..+++.
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 7888999999999999999999999999999999999999988665 889888888888888777766654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-08 Score=83.82 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011365 293 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 372 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 372 (487)
......|.+..|.|.+.+..+ .+..+.....+...++..+| ++.|.+.|++|++.++.++.+...++..
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~----------~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~ 81 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLG----------YSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYG 81 (250)
T ss_pred HhcCcccchhhhhHHHHHHhC----------CCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444566788888898887665 67666677777777777765 8899999999999999999999888887
Q ss_pred hHhcc-------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 373 PLLFQ-------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 373 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
.+... .+.|......++.+.+.+...........+.+|. +||++.|+.-....+++.+-..+...+.+.
T Consensus 82 ~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 82 LLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 76631 1223333334444444444445555556688885 699999999999999998888877666654
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-08 Score=93.46 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=104.1
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc---cCCcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF---QQPKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
....+++.+++++|+++.++++||+|||..+.+..++..++.+.+.+ .+....++..-++.|+..+........++.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667888999999999999999999999888888777776665553 455667778889999999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHH-HHHHhhc-cchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVA-VALVHGC-HQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~-g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
|..|.+.||....+......+|..++..++ ..+.+.. .|...+..-.+.+++ ..+.+.+.||..
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~-~l~~l~~~PESP 208 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL-QLALLPFLPESP 208 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH-HHHHHhcCCCCc
Confidence 999999999999999999999988885554 2333222 233333333333333 334444556653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=89.81 Aligned_cols=175 Identities=19% Similarity=0.075 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchh--hhhhhhcchhHHHHH-HHHHhhhhhhHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD--VFITSFAEFPGLLLA-AAMVDRLGRKLSMS 361 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~ 361 (487)
..+...++.+...+.......|.++++.| .+..+.+.. ..+..+...+..++. ++..||.|||+..+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g----------~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i 73 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDG----------APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWV 73 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHH
Confidence 34556667777777777778888887665 666666654 244456665555555 44678889888865
Q ss_pred HHHHHH-HHHHHhHh-c--cCC-cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 362 SMFFCC-CIFLVPLL-F--QQP-KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 362 ~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
+...+. ..+...+. + ..+ ........++..++.....+....+..|..+++.++...+.......+|..+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~ 153 (390)
T TIGR02718 74 LPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT 153 (390)
T ss_pred HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 544332 22222222 1 111 112233333344555556667777888888888888888888887789999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 437 VALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+++.+..||+..+++.+++.++..+..++..++
T Consensus 154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 154 LVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999988888777665555444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-08 Score=96.10 Aligned_cols=144 Identities=15% Similarity=0.037 Sum_probs=122.2
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHH-HHHHHHHHHHhhhHHHh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTG-LLFGARICITVTFTVVY 402 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 402 (487)
.+..+..+..++......+..++.+.+.||+|.|.+.+.+.++..+++++-.+..+.+.+++ ..++.|++.+..+....
T Consensus 78 ~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pai 157 (509)
T KOG2504|consen 78 SSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAV 157 (509)
T ss_pred CCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchh
Confidence 44444677777877788888899999999999999999999999999999999888765544 55677888888888888
Q ss_pred hhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 403 VYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 403 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
..+...|+ ++|+.+.|+......+|.++-|.+.-++.+..||+...++++.+.+-.+.....+.|
T Consensus 158 viv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 158 VILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88887775 569999999999999999999999999999999999999999888777666666655
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-08 Score=92.04 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhcccccccccCccccchhcccccccch----------hhhHHHHHHHH------HhhhhHHHHH-HHH
Q 011365 13 CSVLLICFAMIFCDIAFDVPELSWNTTTLLNLHFSESDQ----------SSFSFSLFGRL------LLSFRKGFLI-TAI 75 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~G~~------r~Grr~~l~~-~~~ 75 (487)
..++.++.......+++. .++++..|...+++...... +.+.+++.|.. ||||||.++. +..
T Consensus 32 ~~li~v~~ia~Gvqf~wA-~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWA-LELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 334444444444443332 33444445544444443333 33445556655 9999888777 555
Q ss_pred HHHHHHHHHhhchhHHH-----------------HHHHHHHHhhhccch-HHHHHHHHhhcCCCCchh-HHHHHHHHHHH
Q 011365 76 VTSAAGLLSAFAPNYYL-----------------LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF-WMVIFQTFWTV 136 (487)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~-~~~~~~~~~~l 136 (487)
..+++.++..++.++.. ++++-.+.-++.-.. .++-+++.|...++++.+ +++++....++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 66777778877765443 334444444555455 677799999997666665 99999999999
Q ss_pred hHHHHHHHHHHh
Q 011365 137 GTILEAGIAWLV 148 (487)
Q Consensus 137 G~~i~~~~~~~l 148 (487)
|..+|..++.+.
T Consensus 191 GnvLGY~~g~y~ 202 (498)
T KOG0637|consen 191 GNVLGYALGSYL 202 (498)
T ss_pred cceeeeeccccc
Confidence 999988887643
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=83.93 Aligned_cols=337 Identities=13% Similarity=0.072 Sum_probs=201.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHH
Q 011365 64 LSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG 143 (487)
Q Consensus 64 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~ 143 (487)
.--|+++++-.+.......+..+.++.+.+=+.-+..|...+...+-++++-+.++|+++.++.+...+..-.|-..|..
T Consensus 69 lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~v 148 (433)
T KOG3810|consen 69 LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSV 148 (433)
T ss_pred hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhH
Confidence 33488888887778888888889999999888899988887776777789999999999999999999999999999999
Q ss_pred HHHHhhch--hhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhh
Q 011365 144 IAWLVMPR--LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQN 221 (487)
Q Consensus 144 ~~~~l~~~--~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
++..+... .++...-.+.-....++.+...++|..++.+..+.++++. ...+..+.+ +..+...-
T Consensus 149 laQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~e~~~--------~~~~~~~~--- 215 (433)
T KOG3810|consen 149 LAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDLEEMN--------PQASYMSY--- 215 (433)
T ss_pred HHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccchhcC--------ccchhhHH---
Confidence 98888753 3455555555555566667777888766433222221110 000000000 00000000
Q ss_pred hhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhh
Q 011365 222 KSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGL 301 (487)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (487)
........+..+.+..+++.. +.-.+-+....+.+|..
T Consensus 216 ---------------------------------------l~~~~~~l~~~l~~~y~np~l---l~WSlWwAl~scg~~QV 253 (433)
T KOG3810|consen 216 ---------------------------------------LRGAFVLLWRDLQECYSNPRL---LKWSLWWALASCGYYQV 253 (433)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHhcCchh---hhhHHHHHHhhchhHHH
Confidence 000000012233344443321 11122223344444445
Q ss_pred hhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhHhccCC
Q 011365 302 VLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
..+...+.++.. ........+..-.+..+.++++.++.|.+--++.|. .++.++.+..+...+.+....+
T Consensus 254 ~nY~Q~LW~~~~--------~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~ 325 (433)
T KOG3810|consen 254 TNYTQILWKEVA--------PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH 325 (433)
T ss_pred HHHHHHHHHhhC--------CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc
Confidence 445444443221 001112225666677777888889999987766655 3445555566666666667777
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-----------chhH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-----------QTAA 448 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-----------~~~~ 448 (487)
.|...+..++....+....++....+++....+.-|..+|+..++.-+-..+-.. .+.|..| +...
T Consensus 326 Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Y 402 (433)
T KOG3810|consen 326 IWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSY 402 (433)
T ss_pred eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeeh
Confidence 7877777777777777777777777777777888888899887765544433222 2234222 1223
Q ss_pred HHHHHHHHHHHHHheeec
Q 011365 449 LILFELVILLSGISVLLF 466 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~ 466 (487)
|.+.+++.++...+.+..
T Consensus 403 f~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 403 FIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666665544333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-08 Score=89.53 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=89.6
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC---Cc----chHHHHHHHHHHHHHh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ---PK----GLTTGLLFGARICITV 396 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~ 396 (487)
+++...+....+..++.++|.++.|++.||+|||+++...+++++++.++..... ++ ..+...-++.|++.++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 4455557788888999999999999999999999999988888888776554321 11 2344566788999999
Q ss_pred hhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 397 TFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
-+|...+..+|....+.||.-.+...+++..|...|..+.
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 9999999999999999999998888777776665554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-10 Score=109.06 Aligned_cols=140 Identities=18% Similarity=0.074 Sum_probs=111.7
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC---CcchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
....+...++..+|.++.|.+.||+|||+.+..+.++..++.++..+.+ +.+.+.+.-++.|++.++..+....++.
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~ 128 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYIS 128 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5677888999999999999999999999999999999999998888887 7888888889999999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHheeeccccC
Q 011365 407 EIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH---QTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 407 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
|..|+++|+...++.+....+|..++..+.-.+.+..+ |+..+...++..++.. +...+.||+
T Consensus 129 E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pES 194 (451)
T PF00083_consen 129 EIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999999999999999888888887766543333222 5544444444443333 333445654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-05 Score=75.01 Aligned_cols=329 Identities=15% Similarity=0.048 Sum_probs=168.4
Q ss_pred ccccccchhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHH----HHh--hc--h----hHHH---HHHHHHHHhhhccc
Q 011365 44 LHFSESDQSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGL----LSA--FA--P----NYYL---LLFFRCLVGLGLGG 106 (487)
Q Consensus 44 ~~~~~~~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~----~~~--~~--~----~~~~---l~~~r~l~G~~~g~ 106 (487)
+++.......+.++.+|.+ |..|.+++..+.+..-++.. +.. +. + +-+. +++.-.+.|.-.-.
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 3444455556668888887 88887776665544333222 111 11 1 1122 22222222222222
Q ss_pred hHHHHHH--HHhhc------CCCCchhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH-Hhc--
Q 011365 107 GPVLASW--FLEFI------PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVT-- 175 (487)
Q Consensus 107 ~~~~~~~--i~~~~------~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~-~~l-- 175 (487)
...+... =.||. +++.+.+.++.+.-.=-+.-+++|++.+.+.+..+.+....+.++..++.+..= +++
T Consensus 123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 12443 344556666777777777889999999999988888888877777777664432 221
Q ss_pred --CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcc
Q 011365 176 --PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMK 253 (487)
Q Consensus 176 --~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (487)
...|. +..+++.++... .++.+..++....+...
T Consensus 203 VY~~~P~-L~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~------- 238 (432)
T PF06963_consen 203 VYNSVPA-LAVKKRSSESES------------------------------------SSDEESSSESSSDPSIL------- 238 (432)
T ss_pred HHHhChH-hcCCCCCccccc------------------------------------cccccccccccchhhHH-------
Confidence 11121 111111100000 00000000000000000
Q ss_pred cccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhh
Q 011365 254 SEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDV 333 (487)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (487)
+...+.-+....+|+..++.+.+...+.+.+.++.. .. +...+..|+...| .+....+..-
T Consensus 239 -----~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TV-Ls---f~~lmt~yl~~~G----------~s~~~igi~R 299 (432)
T PF06963_consen 239 -----KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTV-LS---FGGLMTAYLKSQG----------YSPSVIGIFR 299 (432)
T ss_pred -----HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHH-hc---CcHHHHHHHHHCC----------CCHHHHHHHH
Confidence 000000000112455555555544444444444431 11 1222333443333 6666667788
Q ss_pred hhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----hHhccCCc---c---hHHHHHHHHHHHHHhhhHHHhh
Q 011365 334 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV----PLLFQQPK---G---LTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 334 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~----~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
....+.++.|.++..++.+|+|..+.-..+......++. .+....++ . .+.....+.-++.=+.--...-
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~q 379 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQ 379 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 888889999999999999999988776666554433322 22222222 1 1122223333333344456677
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
+++|.+|+++||+..|+-+...++...+.-.+
T Consensus 380 i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 380 IMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998887665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=75.05 Aligned_cols=166 Identities=19% Similarity=0.147 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHHhc-ccccccccCccccchhcccccccchhhhH---------HHHHHHH--HhhhhHHHHHHHHHHHH
Q 011365 12 PCSVLLICFAMIFCD-IAFDVPELSWNTTTLLNLHFSESDQSSFS---------FSLFGRL--LLSFRKGFLITAIVTSA 79 (487)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~G~~--r~Grr~~l~~~~~~~~~ 79 (487)
+|..+..+..+..+. ..+..+.++ ....+.++.+..+...++ +.+.|.+ ++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS--~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYS--PQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhh--HHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 355555544444433 233333332 222235666666554433 2334444 99999999999999999
Q ss_pred HHHHHhhc-------hhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch
Q 011365 80 AGLLSAFA-------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 151 (487)
Q Consensus 80 ~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~ 151 (487)
|..+...+ +++|.+.+..++.|.+.+.. .++...-.+.+| ++||.+.|+.-...+++..+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 99877653 46788888888888877766 555555567776 5899999999999999998877776666554
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHhcCCCch
Q 011365 152 LGWRWLLGLSAFPSSLLLLLYSVTPESPR 180 (487)
Q Consensus 152 ~~w~~~f~~~~~~~~i~~~~~~~l~e~p~ 180 (487)
..-+..+.+...+.++.++...+++..|+
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence 33444444445555555666666655543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-07 Score=87.23 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhc-cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhh-----hhH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNN-GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG-----RKL 358 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~ 358 (487)
.+....++..+.. +......+.+++ +.| .+..+.+...+...+...+- +++|.++||++ ||+
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg----------~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~ 96 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLG----------LDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRW 96 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcC----------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchH
Confidence 3444456666666 444444444443 334 66666556666666666664 45999999996 666
Q ss_pred HHHHHHHHH-HHHHHhHhccCCcc-hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHH---HHHHHHHHhHhHhHHH
Q 011365 359 SMSSMFFCC-CIFLVPLLFQQPKG-LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTG---VGVASSIGRIGGMVCP 433 (487)
Q Consensus 359 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~g~~~~~~~~g~~~~~ 433 (487)
.+.++.++. ++....+...++.. ......++.+++.+.......++..|..+ +.++.. .+.......+|..+++
T Consensus 97 ~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~ 175 (468)
T TIGR00788 97 YLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS 175 (468)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence 666666655 23333333333322 22335667777777777888999999988 444443 3344444568999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCC
Q 011365 434 LVAVALVHGCHQTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 434 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
.+.|.+.+..++...+++.+++.++..+ ...+.+|++
T Consensus 176 ~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~ 212 (468)
T TIGR00788 176 LLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERR 212 (468)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccc
Confidence 9999999999999888888777766633 334456654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=86.50 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=93.9
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHh----hhhhh-HHHHHHHHHHHHHHHhHhccCCc--c----hHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVD----RLGRK-LSMSSMFFCCCIFLVPLLFQQPK--G----LTTGLLFGARI 392 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r-~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~ 392 (487)
.+....+....+..+...+..++.|.++| |+||| +.+..+.+.++++..++...++. . ...+..++..+
T Consensus 39 ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~ 118 (473)
T PRK10429 39 LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM 118 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH
Confidence 66666688888888888999999999999 55885 45556766666665555443211 1 12223334456
Q ss_pred HHHhhhHHHhhhccccc-CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHhee
Q 011365 393 CITVTFTVVYVYAPEIY-PTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-------QTAALILFELVILLSGISVL 464 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~ 464 (487)
++........++..|+. ++++|.+..+.......+|+.+.+.+...+.+..| +.....+++++.+++..+..
T Consensus 119 ~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 119 TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888999988 57889999998777778877777666554443322 22233344444444444444
Q ss_pred eccccC
Q 011365 465 LFPFET 470 (487)
Q Consensus 465 ~~~~~~ 470 (487)
+..||+
T Consensus 199 ~~~~e~ 204 (473)
T PRK10429 199 RNVHEV 204 (473)
T ss_pred cCceec
Confidence 444554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=88.63 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=95.5
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHhHhccCCc------chHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKL-SMSSMFFCCCIFLVPLLFQQPK------GLTTGLLFGARI 392 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 392 (487)
.+....+....+..+...+..++.|+++|| +|||+ .++.+.+..+++..++...++. +...+..++.+.
T Consensus 42 ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~ 121 (444)
T PRK09669 42 LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSL 121 (444)
T ss_pred CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 677677888888899999999999999998 66654 4555666666655544433221 122223334455
Q ss_pred HHHhhhHHHhhhccccc-CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-------cchhHHHHHHHHHHHHHHhee
Q 011365 393 CITVTFTVVYVYAPEIY-PTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC-------HQTAALILFELVILLSGISVL 464 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~ 464 (487)
++........++..|.. ++++|++..+.......+|+.+++.+...+.... ++...+.+++++..+...+.+
T Consensus 122 ~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 122 VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 55666666778888887 4477999989998888888888877665555433 233344555555555544445
Q ss_pred eccccC
Q 011365 465 LFPFET 470 (487)
Q Consensus 465 ~~~~~~ 470 (487)
+..+|+
T Consensus 202 ~~~~e~ 207 (444)
T PRK09669 202 FMTKER 207 (444)
T ss_pred CCeEEe
Confidence 554554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-07 Score=82.20 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=117.5
Q ss_pred cccCccccchhcccccccchhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-H
Q 011365 32 PELSWNTTTLLNLHFSESDQSSFSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 108 (487)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~ 108 (487)
..++|....+..+....+....+++.+.|++ |+|.|+++..+.++..+.++...+...-..+.++-++.|.+.|.. .
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 3555555555455555555556667777877 999999999999999999888877777677777889999999999 7
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhcCCC
Q 011365 109 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVTPES 178 (487)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-~~w~~~f~~~~~~~~i~~~~~~~l~e~ 178 (487)
.+-++..+.+|+++-++.+|++....-.+..+||.+.+.+.+. .+-|..+....++.++.++...++|+.
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 7779999999999999999999999999999999999988764 346777777777766766666666654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-07 Score=82.71 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH-HHHHHHhHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTIL 140 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~i 140 (487)
|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+.. .....|+++.+|+|-.++...+. +...++|..+
T Consensus 285 rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i 364 (412)
T PF01306_consen 285 RIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII 364 (412)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH
T ss_pred hcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 78889999999998877777774 7888999999
Q ss_pred HHHHHHHhhchhhhHHHHHHhHHHHHHH-HHHHHhcCCCc
Q 011365 141 EAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESP 179 (487)
Q Consensus 141 ~~~~~~~l~~~~~w~~~f~~~~~~~~i~-~~~~~~l~e~p 179 (487)
.+.++|.+.++.|.+..|++.+.+.++. ++..+.+++++
T Consensus 365 ~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 365 LSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999999999999999999988887766 44555555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-06 Score=74.79 Aligned_cols=140 Identities=16% Similarity=0.005 Sum_probs=119.9
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+...++..+++..++....+++..++.+|+|.++.+..+.++.+++.++=... +...++....+.|.+.+..+.....
T Consensus 44 ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPs 122 (395)
T COG2807 44 LSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPS 122 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhH
Confidence 777788999999999999999999999999999999998888888877665554 5566777788889999999999999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHheee
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC-HQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
++.+.+|++ .+..+|+++....+++.+++.+.-.+.++. ||+......+..++++.++.+.
T Consensus 123 lIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 123 LIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999866 799999999999999999999999888887 6888887877777777655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=74.23 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=90.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchh--------HHHHHHHHHHHhhhccch-HHHHHHHHhhcCCC---CchhHHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPN--------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIF 130 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~---~r~~~~~~~ 130 (487)
++||++.+.++.++..+|..+.+++.. ...++++-.+..+|.|.. +...+...|.++++ +|...+.++
T Consensus 50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f 129 (654)
T TIGR00926 50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF 129 (654)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH
Confidence 999999999999999999988876421 234667778888999999 99999999998754 367788899
Q ss_pred HHHHHHhHHHHHHHHHHhhch-------hhhHHHHHHhHHHHHHHHHHHHh
Q 011365 131 QTFWTVGTILEAGIAWLVMPR-------LGWRWLLGLSAFPSSLLLLLYSV 174 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~-------~~w~~~f~~~~~~~~i~~~~~~~ 174 (487)
..+.++|.++++.+..++.+. .+|...|.+.++..+++++....
T Consensus 130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888643 36999999998888877555433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-06 Score=80.71 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=92.2
Q ss_pred hhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHhHhccCC
Q 011365 301 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG-RKLSMSSMFFCCCIFLVPLLFQQP 379 (487)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
...+.+.++++.| .+..+.+...++..+..+++.++.|.++||.+ +|+.+.+..++.++.++.....++
T Consensus 21 ~~p~~~~~L~~~G----------~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 21 FLPYLPLYLESRG----------FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHhCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345567776655 88888899999999999999999999999985 566776777777776666666666
Q ss_pred cchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHH
Q 011365 380 KGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLV 435 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 435 (487)
.+......++..++.....|...++..+... .++.-+|-....+.+|-+++...
T Consensus 91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 6666666667777777778888888887765 34666777777777777777554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=76.93 Aligned_cols=144 Identities=13% Similarity=0.038 Sum_probs=114.2
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
.+..+..++......+..+++..+|.+.|++|||+.........++.-.+-...++...+.++-.+.+++.++ .|...+
T Consensus 110 ~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~ 188 (528)
T KOG0253|consen 110 PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSA 188 (528)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHH
Confidence 4444556777788889999999999999999999999998888888888777888888888888889999888 899999
Q ss_pred hcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccC
Q 011365 404 YAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+-.|..|..+|..-+-+. +...+|......+.=.+...+||.+..+.......+.+.+.. ..+|.
T Consensus 189 ~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ES 253 (528)
T KOG0253|consen 189 IYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV-WVYES 253 (528)
T ss_pred HHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccC
Confidence 999999999888777666 677788888888877777888988776666654444444433 33443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00067 Score=65.55 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=67.1
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc----hh---------------------------HHHHHHHHHHHhh
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA----PN---------------------------YYLLLFFRCLVGL 102 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~----~~---------------------------~~~l~~~r~l~G~ 102 (487)
.++++.+ |++|++.+-+....+....+++++. ++ .|...+..+...+
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 4566666 9999999888777766666655543 11 2222333444444
Q ss_pred hccch-H-HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhh
Q 011365 103 GLGGG-P-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM 149 (487)
Q Consensus 103 ~~g~~-~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~ 149 (487)
-.... . .-..+++|.++.++-.|..++...+.++|.++++.+..++.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 3 34488899999999999999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-05 Score=70.37 Aligned_cols=149 Identities=11% Similarity=-0.013 Sum_probs=105.0
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
++..+.............+...+.|.+.||+|||+..+...++..++++.-. .++...+++.-++.|++....++..-+
T Consensus 66 ~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS~FEs 144 (354)
T PF05631_consen 66 FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFSAFES 144 (354)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777888888999999999999999888888888776443 456677777788888888887776655
Q ss_pred hc-c----cccCCcchhHHHHHHHHH-HhHhHhHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 404 YA-P----EIYPTSVRTTGVGVASSI-GRIGGMVCPLVAVALVHGCH--QTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 404 ~~-~----~~~p~~~~~~~~g~~~~~-~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+. . .-+|++..+..++...+. +.+-.+.+..+.-++.+..+ ...+|.....+.+++.+++....+|..+.
T Consensus 145 W~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 145 WMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 43 2 235666666666666533 34455555666666666654 46777777777777777666666665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-06 Score=78.79 Aligned_cols=138 Identities=22% Similarity=0.230 Sum_probs=111.4
Q ss_pred hhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 336 TSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 336 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
.++..++.+...|.++||+|||..+......+.+..+.+.+.. +| ..+ ..-...+....+....+++++....+.|.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~ 147 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL-LLGLSGGFSAIFSVGFAYVADISSEEERS 147 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh-hcccccchhhhhhhhhhheeeccchhHHH
Confidence 3567778889999999999999999888888777766666544 22 222 22223345566788899999999999999
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCCCCC
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLS 476 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
..+|+.+.....+..++|.+.+.+....|....+++..+..++..+...+..||+..++.+
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999888888888887655444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=73.26 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc---hh------HHHHHHHHHHHhhhccch-HHHHHHHHhhcCCC---CchhHHHHHHHHH
Q 011365 68 KGFLITAIVTSAAGLLSAFA---PN------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIFQTFW 134 (487)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 134 (487)
|++.++.++..+|.++..++ ++ .+.++++-.+.++|.|+. +...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888899999998884443 22 257889999999999999 99999999999776 3677888999999
Q ss_pred HHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 135 TVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 135 ~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
++|..+++.+.+++-++++|...|.+.++..+++++.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999889999999999998888886655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=76.82 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=78.7
Q ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCC-------C
Q 011365 55 SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP-------N 122 (487)
Q Consensus 55 ~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~-------~ 122 (487)
..++.+.+ |+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+.. +...+...|..|++ +
T Consensus 280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~ 359 (448)
T PRK09848 280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRI 359 (448)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccc
Confidence 34455555 99999999999998888887776654 5777777888999999888 77778888877643 4
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHhhchhh
Q 011365 123 RGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 153 (487)
Q Consensus 123 r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 153 (487)
+|...+..+....+|..+++.+.+.+.+..|
T Consensus 360 ~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 360 EGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999888764433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=85.81 Aligned_cols=146 Identities=16% Similarity=0.068 Sum_probs=104.3
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHh----hhhhhHHH-HHHHHHHHHHHHhHhccCC----c----chHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVD----RLGRKLSM-SSMFFCCCIFLVPLLFQQP----K----GLTTGLLFGA 390 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~-~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~ 390 (487)
.++...+....+..+...+..++.|.++| |+|||+.. ..+.+..+++..++....+ . ....+..++.
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~ 113 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF 113 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 66666677777778888888889999999 78877654 5677777777777665412 1 1123444455
Q ss_pred HHHHHhhhHHHhhhcccccCC-cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHh
Q 011365 391 RICITVTFTVVYVYAPEIYPT-SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-------QTAALILFELVILLSGIS 462 (487)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-------~~~~~~~~~~~~~~~~~~ 462 (487)
.+++........++..|..++ ++|.+..+.......+|..+...+.+.+.+..+ +....++.+++.++...+
T Consensus 114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i 193 (428)
T PF13347_consen 114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI 193 (428)
T ss_pred HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence 666777777788899999984 689999999999999998877777777775444 444555666666666666
Q ss_pred eeecccc
Q 011365 463 VLLFPFE 469 (487)
Q Consensus 463 ~~~~~~~ 469 (487)
..+..||
T Consensus 194 ~~~~~ke 200 (428)
T PF13347_consen 194 TFFFVKE 200 (428)
T ss_pred hhheeee
Confidence 6666667
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=78.87 Aligned_cols=147 Identities=11% Similarity=-0.026 Sum_probs=98.6
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhh----hhhhHH-HHHHHHHHHHHHHhHhccCCc------chHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKLS-MSSMFFCCCIFLVPLLFQQPK------GLTTGLLFGARI 392 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 392 (487)
.+....+....+.-+...+.-++.|.++|| +|||+. ++++.+..+++..++...++. ....+..++...
T Consensus 42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~ 121 (460)
T PRK11462 42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL 121 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 666666888888888888999999999997 576654 455666666666655543321 122333344566
Q ss_pred HHHhhhHHHhhhcccccC-CcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHhee
Q 011365 393 CITVTFTVVYVYAPEIYP-TSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-------QTAALILFELVILLSGISVL 464 (487)
Q Consensus 393 ~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~ 464 (487)
++........++..|+.+ +++|++..+.......+|..+++.+...+.+..| +.....+++++.+++..+++
T Consensus 122 ~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 122 LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888887 5789999999999999998888888766665443 23333444444444444444
Q ss_pred eccccC
Q 011365 465 LFPFET 470 (487)
Q Consensus 465 ~~~~~~ 470 (487)
...+|+
T Consensus 202 ~~~kE~ 207 (460)
T PRK11462 202 FTTKER 207 (460)
T ss_pred hcceec
Confidence 444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=65.60 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=44.9
Q ss_pred HHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc
Q 011365 390 ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH 444 (487)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g 444 (487)
.+......+....+..+++.++...|+.+.+.|+..++|+---..+..++.|..+
T Consensus 379 ~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 379 HQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 3444445556677888999999999999999999999999888888888988654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.1e-06 Score=75.08 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=75.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE 141 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~ 141 (487)
|+|+|+.+.++..+..++.++....++...+ ..-++.|++.+.. |...+...+..|++ .+.+.++. ....+|..+.
T Consensus 204 r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 204 MISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIV 280 (310)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHH
Confidence 9999999988888888877666665544333 3556888998888 88888888877653 45666765 5667899999
Q ss_pred HHHHHHhhchhhhHHHHHHhHHH
Q 011365 142 AGIAWLVMPRLGWRWLLGLSAFP 164 (487)
Q Consensus 142 ~~~~~~l~~~~~w~~~f~~~~~~ 164 (487)
|++.|.+.+..|.+..|++..+.
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHHH
Confidence 99999999988988888755444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.7e-06 Score=78.29 Aligned_cols=185 Identities=15% Similarity=0.067 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhh-hH
Q 011365 280 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR-KL 358 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~ 358 (487)
.||..++..+..+.....+.....-.-.|.++. +.+-+.+..++..+...++..+++++.|+...|.+. |+
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l--------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~ 103 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL--------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK 103 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhc--------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc
Confidence 345555666666655544433222111222211 122344444888889999999999999999999885 77
Q ss_pred HHHHHHHHHHHHHHhHh---c-cC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHH
Q 011365 359 SMSSMFFCCCIFLVPLL---F-QQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCP 433 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (487)
.++.+.++++++.++.. . .+ ..++.++.-++.|++.+. ....-.++++..-.+.|.++++..+...-+|.++||
T Consensus 104 Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 88888888888777663 2 22 334555566666666444 356677777766677789998888887777777777
Q ss_pred HHHHHHHhh------------cc-chhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 434 LVAVALVHG------------CH-QTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 434 ~i~g~l~~~------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
.+...+... ++ +..+.++.+++.++..++..+..+|..+.
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 765444321 11 23566777777777777777777665443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00094 Score=66.38 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=86.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchh-------------------------HHHHHHHHHHHhhhccch-HHHHHHHHh
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPN-------------------------YYLLLFFRCLVGLGLGGG-PVLASWFLE 116 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~g~~-~~~~~~i~~ 116 (487)
.+||-+++.++.++..+|..+..++.. ...++.+.-+..+|.|.. +...++-+|
T Consensus 100 f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGad 179 (571)
T KOG1237|consen 100 FLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGAD 179 (571)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccc
Confidence 899999999999988888655443211 125666677788899998 888899999
Q ss_pred hcC---C-CC--chhHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHh
Q 011365 117 FIP---A-PN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 174 (487)
Q Consensus 117 ~~~---~-~~--r~~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~ 174 (487)
.++ + ++ +...+.++....++|..++..+..+.-++.+|...|.+..+..++++++++.
T Consensus 180 Qfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 180 QFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred ccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 998 2 22 2367888999999999999888888878899999999888877777555444
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00068 Score=64.27 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 389 GARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
+..+.....+....++-+.+.+|..-|+.+.+.|++.++|+---..+.=++.|.
T Consensus 414 l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 414 LSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 334455556677778888899999999999999999999997777676677764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=78.80 Aligned_cols=141 Identities=12% Similarity=0.046 Sum_probs=99.0
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHhHhccCCc--------chHHHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMSSMFFCCCIFLVPLLFQQPK--------GLTTGLLFGARICI 394 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 394 (487)
.+...+......+....-+..+++|++.|+ +|+++.+..+.++..++..++.+.... ...+..+.+..++.
T Consensus 20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~ 99 (654)
T TIGR00926 20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT 99 (654)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc
Confidence 444444444444555555667889999997 699999999888888877766543211 12445566667777
Q ss_pred HhhhHHHhhhcccccCCc---chhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-------cchhHHHHHHHHHHHHHHhee
Q 011365 395 TVTFTVVYVYAPEIYPTS---VRTTGVGVASSIGRIGGMVCPLVAVALVHGC-------HQTAALILFELVILLSGISVL 464 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~ 464 (487)
++.-|...+...|.++++ .+-+.+.++....++|+.+++.+.+++.+.. +|...|.+.+++++++.++..
T Consensus 100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 788888899999888754 3677888888899999999999999887543 455566666666665555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00084 Score=64.75 Aligned_cols=105 Identities=9% Similarity=0.012 Sum_probs=67.8
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhh--HHHHHHHHHHHH---HHHhHh---------ccCCcchHHHHHHHHHHHHH
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCI---FLVPLL---------FQQPKGLTTGLLFGARICIT 395 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 395 (487)
......+.++..+|+.+..+.. .-++| ++.. ..+.=.+ .+++.. ..++.+..++..++.|+..|
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i-~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPI-LSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHH-HHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 4566677888888888654431 11222 3222 2221111 111111 12345566777888899999
Q ss_pred hhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 396 VTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
...+....+..+.+++++|..+-.+...+..+|-.+|..+.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999998888888888888887777653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=73.69 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=106.2
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 132 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 132 (487)
-.+.+.+ |+|+-+++.+++...++=.+..++.+|.|+.+-.-+++|+..+.. .++.+|+++..||+-|..+-++.+.
T Consensus 423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g 502 (618)
T KOG3762|consen 423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG 502 (618)
T ss_pred HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence 3445566 999999999999999999999999999999999999999999999 7778999999999999999988765
Q ss_pred H-HHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 133 F-WTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 133 ~-~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
. .++|--+|.++++.+.+.++-|..|.+.++.+++.++....+
T Consensus 503 ~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 503 IFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 4 688999999999999999999999999998888876655443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=68.33 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh----hhhhHH-HHHHHHH
Q 011365 292 FGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKLS-MSSMFFC 366 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~ 366 (487)
+...+.+.....|+..+..+. .+.+...++....+.=+...+.-++.|.++|| +||++. ++.+.+.
T Consensus 22 ~~~~~~~~~~~~yLl~fYTdv---------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip 92 (467)
T COG2211 22 FASNFAFGIVVLYLLFFYTDV---------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP 92 (467)
T ss_pred hHHHHHHHHHHHHHHHHHhcc---------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence 333344444445555544332 23666666777777778888888999999997 455544 4556566
Q ss_pred HHHHHHhHhccCC------cchHHHHHHHHHHHHHhhhHHHhhhcccccCC-cchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 367 CCIFLVPLLFQQP------KGLTTGLLFGARICITVTFTVVYVYAPEIYPT-SVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 367 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
.++...++...++ .....+...+.++++...+....++..|+.++ ++|.+..+.-.....+|..+...+.+.+
T Consensus 93 ~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 93 FAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554432 23344555677788888888888888888764 7899999999999999999888888877
Q ss_pred Hhhcc-------chhHHHHHHHHHHHHHHheeeccccCC
Q 011365 440 VHGCH-------QTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 440 ~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
....+ +.....+++++.++..+++++-.+|+.
T Consensus 173 v~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 173 VKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 76543 334444555555555555555555544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00025 Score=65.44 Aligned_cols=112 Identities=35% Similarity=0.460 Sum_probs=87.7
Q ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHhhhccch-HHHHHHHHhhcCC-CCchhHHHHH
Q 011365 57 SLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPN--YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIF 130 (487)
Q Consensus 57 ~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~-~~r~~~~~~~ 130 (487)
.+.|.+ |+|||+.+..+.....++.++..+..+ .+.+++.|++.|++.+.. +...+++.|+.|+ ++|+...+..
T Consensus 57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (338)
T COG0477 57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLV 136 (338)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 455655 779998888888776666677777766 899999999999999987 8888999999988 6789999988
Q ss_pred HH-HHHHhHHHHHHHHHHhhch--hhhHHHHHHhHHHHHHH
Q 011365 131 QT-FWTVGTILEAGIAWLVMPR--LGWRWLLGLSAFPSSLL 168 (487)
Q Consensus 131 ~~-~~~lG~~i~~~~~~~l~~~--~~w~~~f~~~~~~~~i~ 168 (487)
.. ...+|.++++.+++.+... .+||..|.+........
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 137 TLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88 5888889998777776543 57888666655554433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00054 Score=55.34 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=90.5
Q ss_pred cchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccc
Q 011365 329 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEI 408 (487)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (487)
......+......++.++.+.+.+++|.|+.++++.++..+....... ++.+..+....+.|++.+..++..-.++.+.
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 345555666677788899999999999999999999888876666544 3456677888899999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHhHhHhHHHHHHHHHH
Q 011365 409 YPTSVRTTGVGVASSIGRIGGMVCPLVAVALV 440 (487)
Q Consensus 409 ~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~ 440 (487)
..++.+++..++...+...+.++|..+.-.+.
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888877665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=60.97 Aligned_cols=122 Identities=14% Similarity=0.045 Sum_probs=86.7
Q ss_pred hhhhHHHHHHHH--HhhhhHHHHHHHHHHHHHH-HHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 51 QSSFSFSLFGRL--LLSFRKGFLITAIVTSAAG-LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 51 ~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
.+...++++|.+ ++|++-..+.+..+..+.. ....| +++.=+.+..+.|++.... ....+.++...|+++.|.+
T Consensus 312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTa 389 (459)
T KOG4686|consen 312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTA 389 (459)
T ss_pred hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcch
Confidence 455668888888 9999998888666554433 22222 2333346677888888777 4455889999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhchh---hhHHHHHHh-HHHHHHHHHHHHh
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPRL---GWRWLLGLS-AFPSSLLLLLYSV 174 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~~---~w~~~f~~~-~~~~~i~~~~~~~ 174 (487)
.|..+...++|..+.|++++.+.+.- .|--.|.+. +.+++....+.+.
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998753 355555443 4444444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00041 Score=64.41 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhhhh-----hhHHHH-HHHHHHHHHHHhHh-----ccC-------Ccc----hHHHHHHHHHHHHHhhhH
Q 011365 342 PGLLLAAAMVDRLG-----RKLSMS-SMFFCCCIFLVPLL-----FQQ-------PKG----LTTGLLFGARICITVTFT 399 (487)
Q Consensus 342 ~~~~~~g~l~dr~g-----~r~~~~-~~~~~~~~~~~~~~-----~~~-------~~~----~~~~~~~~~~~~~~~~~~ 399 (487)
+.+...|+.+|+.+ ||...+ .+....+.+..+.. ... +.+ .......+.|.+.....+
T Consensus 29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T 108 (403)
T PF03209_consen 29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT 108 (403)
T ss_pred HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence 46889999999988 776544 34444443333222 112 222 223445667788888889
Q ss_pred HHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHH
Q 011365 400 VVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALIL 451 (487)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 451 (487)
...+++.|..|+++|+++.++...+.-+|.+++..+.|.+.+.+......-+
T Consensus 109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 9999999999999999999999999999999999999999987654433333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00021 Score=66.57 Aligned_cols=118 Identities=16% Similarity=0.010 Sum_probs=80.9
Q ss_pred ccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC-----C-cc--hHHHHHHHHHHHHHhh
Q 011365 326 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-----P-KG--LTTGLLFGARICITVT 397 (487)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~-~~--~~~~~~~~~~~~~~~~ 397 (487)
.+.+.+...++.+..++..+.+.|+.||+|-|....++....+++..+=.... + .+ +......+.+......
T Consensus 78 ~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi 157 (480)
T KOG2563|consen 78 SSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI 157 (480)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence 33446777788888999999999999999999999999988888766543221 2 12 2222333333333222
Q ss_pred hHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 398 FTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
.....-...-.+|+++|+++..+..+.+.+|.+++-.+...+..+.
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 2222334455689999999999999998899888877777666543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00059 Score=59.07 Aligned_cols=56 Identities=16% Similarity=0.289 Sum_probs=39.9
Q ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHHHh---h--chhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 120 APNRGFWMVIFQTFWTVGTILEAGIAWLV---M--PRLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 120 ~~~r~~~~~~~~~~~~lG~~i~~~~~~~l---~--~~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
.|+|+..+.+...++++|.++.....-.- . ..-.|+.++.+.+++.++-++++..+
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999998875543222 1 12369999999998888776665554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00047 Score=66.84 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=98.1
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHhHhccC----CcchHHHHHHHHHHHH
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRL-----GRKLSMSSMFFCCCIFLVPLLFQQ----PKGLTTGLLFGARICI 394 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 394 (487)
.++.+......+..+-- ...++.|.++|.+ .||..++++.++..++.+.+...+ +.....+++++..++.
T Consensus 22 ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~ 100 (433)
T PF03092_consen 22 LSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGY 100 (433)
T ss_pred CCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 44443333333333322 3457899999986 355566667777755555554322 2334455566667777
Q ss_pred HhhhHHHhhhcccccCC--cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeecccc
Q 011365 395 TVTFTVVYVYAPEIYPT--SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
...-...-++..|.... +.+|...+....+..+|++++..+.|.+.+..++...+.+.+.+..+..+..+++.+|
T Consensus 101 a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 101 AFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 77777777888887632 2378888888999999999999999999999888888877777777666666666655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00092 Score=54.03 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=73.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE 141 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~ 141 (487)
++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+.. ..-..++.+..++++|++..++.......+.++|
T Consensus 63 ~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G 141 (156)
T PF05978_consen 63 KLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFG 141 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999999888655444 4578889999999999999999 6666899999999999999999999999888888
Q ss_pred HHHHHHh
Q 011365 142 AGIAWLV 148 (487)
Q Consensus 142 ~~~~~~l 148 (487)
.++...+
T Consensus 142 ~~~~~~~ 148 (156)
T PF05978_consen 142 NLFLFFI 148 (156)
T ss_pred HHHHHHH
Confidence 8776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.065 Score=52.41 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc
Q 011365 111 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 150 (487)
Q Consensus 111 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~ 150 (487)
..+..|.++.++-.|..++...+.++|.++++.+..++.+
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999888888766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0066 Score=58.84 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhH-HHHHHHHHhhhhhhHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPG-LLLAAAMVDRLGRKLS 359 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~ 359 (487)
.+.++...+.+++..+.|+.+-..-..+..... +.+.+.....-+...+...+. .++.+++++|++|+++
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~---------~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l 76 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTAK---------GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL 76 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheeeccc---------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence 356666667777777777666544433321100 011122233333333333333 6788999999999988
Q ss_pred HHHHHHHHHHHHHhHhcc---C--C--------------------------cchHHHHHHHHHHHHHhhhH-HHhhhccc
Q 011365 360 MSSMFFCCCIFLVPLLFQ---Q--P--------------------------KGLTTGLLFGARICITVTFT-VVYVYAPE 407 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~---~--~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 407 (487)
+-.........++++.+. . . .|......+..-+......+ ..+.+++|
T Consensus 77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766555554444443321 0 0 11111222222333333344 78999999
Q ss_pred ccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 408 IYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 408 ~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
.+..++..+-+++....+++|..+++.+..++.+
T Consensus 157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.052 Score=51.80 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=71.6
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhc---------hh----------H-------------HHHHHHHHHHh
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFA---------PN----------Y-------------YLLLFFRCLVG 101 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~---------~~----------~-------------~~l~~~r~l~G 101 (487)
..+++.+ ++.+.+++-+....+....+++++. ++ . |...+..+..=
T Consensus 79 ~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aE 158 (509)
T COG3202 79 TIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAE 158 (509)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHH
Confidence 3344444 7788888877666666666665542 11 0 22222222222
Q ss_pred hhccch-H-HHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-h---------hhHHHHHHhHHHHHHHH
Q 011365 102 LGLGGG-P-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-L---------GWRWLLGLSAFPSSLLL 169 (487)
Q Consensus 102 ~~~g~~-~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~-~---------~w~~~f~~~~~~~~i~~ 169 (487)
+-.... . .-.....|.+..++-.|..+++..+.+++..++..+..++..+ . ..+..+.+.+..+++.+
T Consensus 159 LWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~ 238 (509)
T COG3202 159 LWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAI 238 (509)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233 2 2236678999999999999999999999999999888887652 1 13444555555555554
Q ss_pred HHHHh
Q 011365 170 LLYSV 174 (487)
Q Consensus 170 ~~~~~ 174 (487)
.+..+
T Consensus 239 ~l~~~ 243 (509)
T COG3202 239 LLYRY 243 (509)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=54.39 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=58.6
Q ss_pred hhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhH-------hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccc
Q 011365 336 TSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL-------LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEI 408 (487)
Q Consensus 336 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (487)
+.+...+|.+...+.-++-.|+.......=...+-++.+ ....+.+..+....+.++..|-..+....+..+.
T Consensus 292 fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~ 371 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQ 371 (406)
T ss_pred hHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCC
Confidence 566677775555555444323322222222222222221 1234556677788888898888889999999999
Q ss_pred cCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 409 YPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 409 ~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
+|++++-.+-.+.......|-..|. +.+++
T Consensus 372 v~~~e~e~aG~~m~~fl~~Gl~~G~-~~s~l 401 (406)
T KOG1479|consen 372 VKPSEKEAAGNLMVFFLVGGLALGS-LLSWV 401 (406)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence 9888765554444444444444443 34444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.01 Score=54.44 Aligned_cols=114 Identities=20% Similarity=0.136 Sum_probs=83.3
Q ss_pred cchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCC--cchHHHHHHHHHHHHHhhhHHHhhhcc
Q 011365 329 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP--KGLTTGLLFGARICITVTFTVVYVYAP 406 (487)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (487)
.+.......+...++.++.|.+.||.|||+.+..+......+.+...+..+ .+.........+++.+...+...++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 120 (338)
T COG0477 41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 366666777777778899999999999997777666543444333333333 344444455567777788899999999
Q ss_pred cccCC-cchhHHHHHHHH-HHhHhHhHHHHHHHHHHhh
Q 011365 407 EIYPT-SVRTTGVGVASS-IGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 407 ~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~i~g~l~~~ 442 (487)
|..|. +.|+...+.... ...++..++|.+.+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 678888888888 5778888888777776654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.022 Score=53.69 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=92.4
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHH
Q 011365 339 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGV 418 (487)
Q Consensus 339 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 418 (487)
..++.-+....+.|.++.|++++.+.+...+...++.+.++....-+.-+..|...+. -...++++-..+|+++--++.
T Consensus 53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHH
Confidence 3445567788999999999999999998888888888888887777777777777554 466677777788888888999
Q ss_pred HHHHHHHhHhHhHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHheeecc
Q 011365 419 GVASSIGRIGGMVCPLVAVALVHGCH--QTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 419 g~~~~~~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
+......-+|..++..++-.+....+ +.....+..+...++.++.++++
T Consensus 132 s~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 132 SYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999888888888888776665332 22222333333344444444443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=45.81 Aligned_cols=63 Identities=11% Similarity=-0.093 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH
Q 011365 294 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC 366 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 366 (487)
.........-+.|.+.++.| .+..+.+....+..+..+++.+++|.++||.++++.......+
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~G----------l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLG----------LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 33334445556677776555 8888889999999999999999999999999998877655444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0057 Score=58.31 Aligned_cols=110 Identities=13% Similarity=-0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhHhc---cCC------cchHHHHHHHHHHHHHhhhHHHhhhcccccCCc---chhHHHHHHHHHH
Q 011365 358 LSMSSMFFCCCIFLVPLLF---QQP------KGLTTGLLFGARICITVTFTVVYVYAPEIYPTS---VRTTGVGVASSIG 425 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 425 (487)
+++.++.++..++.+++.. ... ...+.+.+.+.+++.++.-|...++..|.++++ .|.+.+..+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4566667777776666332 222 246677788889999999999999999999865 4677788889999
Q ss_pred hHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeecc
Q 011365 426 RIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 426 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
++|..+++.+.+++.+..||...|.+.++..+++.+..+.-.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998888888777777766555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00021 Score=70.79 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=2.3
Q ss_pred CccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC------------------------
Q 011365 323 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ------------------------ 378 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 378 (487)
+.+..+.+.+.+..-++.++..++..++.+|..|-+.+..+.++++++.+++...+
T Consensus 34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~ 113 (539)
T PF03137_consen 34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL 113 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence 37888889999999999999999999999988777888888888888777654210
Q ss_pred --------------------------CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHH
Q 011365 379 --------------------------PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVC 432 (487)
Q Consensus 379 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 432 (487)
....+++..++.|++....+++..+++-|.++++..+...|+......+|-++|
T Consensus 114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp --------------------------------------SSS---------------------------------------
T ss_pred ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence 012334455677777788889999999999999999999999999988888888
Q ss_pred HHHHHHHHhh---------------------cc-chhHHHHHHHHHHHHHHheeecccc
Q 011365 433 PLVAVALVHG---------------------CH-QTAALILFELVILLSGISVLLFPFE 469 (487)
Q Consensus 433 ~~i~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
-.+++..... .| |+..|++.+++.++.++....++|+
T Consensus 194 f~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 194 FLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 7777766531 12 4555666666666666666666544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.033 Score=49.53 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=65.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 142 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~ 142 (487)
++|.|.. +..++.+.+.++.+++.+.++-+++-.+..++.|..-+..--++..+++. ..+.++.+.+.+.++|.
T Consensus 90 pf~~Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa 163 (409)
T KOG3880|consen 90 PFGFRIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGA 163 (409)
T ss_pred ccchHHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhh
Confidence 6666654 44566778888899999999999999999999888733333333333332 23334444444445554
Q ss_pred HHHHHhhc--hhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 143 GIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 143 ~~~~~l~~--~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
.--..+.+ ..+-|...++...+.++.....+++
T Consensus 164 ~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 164 SSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 43333333 3467777777766555554444444
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.00099 Score=61.48 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=3.6
Q ss_pred hhhhhhhhcchhHHHHHHHHHhhh-hhhHHHHHHHHHHH--HHHHhHh-----------ccCCcchHHHHHHHHHHHHHh
Q 011365 331 GDVFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCC--IFLVPLL-----------FQQPKGLTTGLLFGARICITV 396 (487)
Q Consensus 331 ~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 396 (487)
.....+.++..+|+.+.++..-+. .+|++.. ..+.=. +-++++. ..++.+..++..++.++..|.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356678899999999888743221 2443332 211111 1111111 123445566777888888888
Q ss_pred hhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 397 TFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
..+....+..+.+++++|..+-.+...+..+|-.+|..+.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988888887777777777777766654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.017 Score=58.24 Aligned_cols=147 Identities=12% Similarity=0.013 Sum_probs=109.6
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc--------------------C-----
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--------------------Q----- 378 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------------------~----- 378 (487)
.+....+++...+-++..+...+..+...|..|-+.+..+.++++++.++..+. .
T Consensus 129 i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s 208 (735)
T KOG3626|consen 129 ISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLS 208 (735)
T ss_pred CCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccc
Confidence 666667888888888888888888899889888888888888887777665421 0
Q ss_pred ----------------------C----cc-hHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhH
Q 011365 379 ----------------------P----KG-LTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMV 431 (487)
Q Consensus 379 ----------------------~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 431 (487)
. ++ ++++..++.|++....++...+++-|.+.+++.....|+..++..+|-++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPai 288 (735)
T KOG3626|consen 209 FCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAI 288 (735)
T ss_pred hhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHH
Confidence 0 11 33445566777777788899999999999999999999999998888888
Q ss_pred HHHHHHHHHhhc------------------c-chhHHHHHHHHHHHHHHheeeccccC
Q 011365 432 CPLVAVALVHGC------------------H-QTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 432 ~~~i~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
|-.+++++...+ | |+..|++.+.+.++..+..+++.++.
T Consensus 289 GfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 289 GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 888887776421 1 45556677777777777776665443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.18 Score=50.12 Aligned_cols=130 Identities=15% Similarity=0.060 Sum_probs=70.5
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHH-HHHH-HHHHHHhHh----ccCCc-chHHHHHHHHHHHHHhhhHHHh
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS-MFFC-CCIFLVPLL----FQQPK-GLTTGLLFGARICITVTFTVVY 402 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~-~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (487)
+...+++..+..+|+.+++++.++.-++....- +..+ ..++..++. +.... .......++.++..|+..|...
T Consensus 53 ~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~ 132 (521)
T PRK03612 53 STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLM 132 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777766544333322111 1111 111111111 11011 1123334455677777777776
Q ss_pred hhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh-hccchhHHHHHHHHHHHHH
Q 011365 403 VYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH-GCHQTAALILFELVILLSG 460 (487)
Q Consensus 403 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~ 460 (487)
.+..+... +..+...|-......+|+++|+++.+++.- ..|.....++.+.+.++++
T Consensus 133 ~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 133 RILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 66654322 235677888888899999999999887654 6776555555554444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=41.17 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=60.7
Q ss_pred HhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccC
Q 011365 299 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 378 (487)
+.+.-.+|.+.++.+ .+..+.++..+...++.++|.+...++.++.++++.+..+.+...+..+.+.+..
T Consensus 9 FayTplLP~M~~~~~----------ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 9 FAYTPLLPLMQADGG----------LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHhHhHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456688776655 8888889999999999999999999999998888899999999999888888776
Q ss_pred Ccc
Q 011365 379 PKG 381 (487)
Q Consensus 379 ~~~ 381 (487)
+.+
T Consensus 79 ~~~ 81 (85)
T PF06779_consen 79 SFW 81 (85)
T ss_pred chH
Confidence 654
|
Note that many members are hypothetical proteins. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.18 Score=49.39 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=38.7
Q ss_pred HHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHh
Q 011365 400 VVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVH 441 (487)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~ 441 (487)
..|.+++|..+.++..+.+++.....++|.++++.+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.019 Score=54.13 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh----hhhh
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRK 357 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r 357 (487)
+..+......++..+.+-.-..+.+.+.++.| .+....+......-+.+++..++.|..+|| +|||
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lG----------vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLG----------VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcC----------CCcccccccccccccccceecccccccccccccccccc
Confidence 44455555555556666555566666666655 666666666667777888888999999996 6777
Q ss_pred HHHHH-HHHHHHHHHHhHhcc--------CCc----chHHHHHH-----HHHHHHHhhhHHHhhhcccccCCcchhH-HH
Q 011365 358 LSMSS-MFFCCCIFLVPLLFQ--------QPK----GLTTGLLF-----GARICITVTFTVVYVYAPEIYPTSVRTT-GV 418 (487)
Q Consensus 358 ~~~~~-~~~~~~~~~~~~~~~--------~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~ 418 (487)
+..+. +.....+++.++.+. ++. ....+..+ +.-+.........-++..|+..++.+.+ ++
T Consensus 102 RPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~An 181 (498)
T KOG0637|consen 102 RPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRAN 181 (498)
T ss_pred cchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccc
Confidence 76554 444445555555432 111 11222222 3333444555667788899988777777 99
Q ss_pred HHHHHHHhHhHhHHHHHHH
Q 011365 419 GVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 419 g~~~~~~~~g~~~~~~i~g 437 (487)
+....+..+|+.+|-.+.+
T Consensus 182 s~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 182 SVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhHHHHHHhcceeeeeccc
Confidence 9999998999888766654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.43 Score=45.22 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=75.1
Q ss_pred hhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCC
Q 011365 332 DVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPT 411 (487)
Q Consensus 332 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 411 (487)
......+-.++..++..+..+|+..+.-...+..++++++++..+.++.+.-++...+.+++.+..-.....+.. .+|+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence 333444556667778889999987665556666777778887777777776677777777776666555555543 5554
Q ss_pred cchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccc--hhHHHHHHHHHHHH
Q 011365 412 SVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQ--TAALILFELVILLS 459 (487)
Q Consensus 412 ~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~--~~~~~~~~~~~~~~ 459 (487)
. ..+-.....+.++.+|+...-.+.+ .|. +..++.+..+.++.
T Consensus 143 ~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~ 187 (402)
T PF02487_consen 143 S----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIF 187 (402)
T ss_pred c----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHH
Confidence 2 2344444445666777766655554 443 34455554444333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.44 E-value=1 Score=43.39 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=74.4
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHHhHhccCC-----cchHHHHHHHH-HH-HHH
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-------CCIFLVPLLFQQP-----KGLTTGLLFGA-RI-CIT 395 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~-~~-~~~ 395 (487)
........+..++.....|..+||..|.+....+.+. .++.+..+..... .+....+..+. .+ +..
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 3344455566667778889999999988766544332 2222222221111 22222111111 11 111
Q ss_pred hhhHHHhhhcc------ccc--CCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheee
Q 011365 396 VTFTVVYVYAP------EIY--PTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 396 ~~~~~~~~~~~------~~~--p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
-.......... .+. +++...+.++.+.-+-.+...++|++.|.+.+..+......+.++..+++..+=++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222 222 34445666666666667899999999999999888777777777777666655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=44.22 Aligned_cols=149 Identities=10% Similarity=-0.040 Sum_probs=79.2
Q ss_pred ccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhh
Q 011365 324 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
+...+.+..........++...+.|-++||.|||+..+.-++...++++ --..+...++++.-.+.|+.....++..-+
T Consensus 69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEs 147 (454)
T KOG4332|consen 69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFES 147 (454)
T ss_pred ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHH
Confidence 4445554444444444455567888999999999876544444444332 123444555666667777777766666554
Q ss_pred -hccccc-----CCcchhHHHHHHHHH-HhHhHhHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 404 -YAPEIY-----PTSVRTTGVGVASSI-GRIGGMVCPLVAVALVHGC--HQTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 404 -~~~~~~-----p~~~~~~~~g~~~~~-~~~g~~~~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
++.|.. |.+.....++=..++ +.+-.+++...+-.+.|.+ |+..+|-..+++..++..+.+--..|..++
T Consensus 148 WliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 148 WLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCC
Confidence 344443 223223333322222 2344555555555566654 455566555555555554444333344443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.5 Score=42.24 Aligned_cols=153 Identities=14% Similarity=0.034 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhh-cchhHHHHHHHHHhhhhhh
Q 011365 279 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF-AEFPGLLLAAAMVDRLGRK 357 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r 357 (487)
.-++.++.+.+.+++..+.++.+-..-..+.... .+++.....-+..-+ ++++..++-.++.+++.+.
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~-----------~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~ 92 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLLRSLKDSLVVTR-----------QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTRE 92 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeec-----------CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHH
Confidence 3456666677777776666655544433333110 111111222222222 3445556677778888887
Q ss_pred HHHHHHHHHHHHHHHhHhc---------cCC-----------c------------chHHHHHHHHHHHHHhhh-HHHhhh
Q 011365 358 LSMSSMFFCCCIFLVPLLF---------QQP-----------K------------GLTTGLLFGARICITVTF-TVVYVY 404 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~---------~~~-----------~------------~~~~~~~~~~~~~~~~~~-~~~~~~ 404 (487)
+++-........+.+++++ .++ + |.......+.-+-..... -..+..
T Consensus 93 ~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f 172 (509)
T COG3202 93 KVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF 172 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765444443333333321 010 1 222222222222222222 367889
Q ss_pred cccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 405 APEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 405 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
..|....++..+-+++.+...+++..++..+..++..+
T Consensus 173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999988887763
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.27 Score=45.50 Aligned_cols=141 Identities=20% Similarity=0.139 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchh--HHHHHHHHHh-----h
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFP--GLLLAAAMVD-----R 353 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~l~d-----r 353 (487)
++.++.+.+.+..+...+.-. .-.|.+++..+ .+-...+ ++.+..-+ --+++..++| |
T Consensus 30 ~~~illLl~LYllQGiP~GL~-~~iP~lL~ak~----------vSyt~~a----~fS~ay~P~sLKllWaPiVDs~y~k~ 94 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLI-GAIPLLLQAKG----------VSYTSQA----IFSFAYWPFSLKLLWAPIVDSVYSKR 94 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHh-hhhHHHhcCCC----------cchhhhh----hhhhhhhHHHHHHHHHhhhHHHHHHh
Confidence 345555566666665554333 36788775332 2222222 22222222 2467888888 9
Q ss_pred hhhhHHHHH-HHHHHHHHHHhHhccCC---------cchHH--HHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHH
Q 011365 354 LGRKLSMSS-MFFCCCIFLVPLLFQQP---------KGLTT--GLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVA 421 (487)
Q Consensus 354 ~g~r~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 421 (487)
+||||..++ +..+....++.+....+ +...+ ...++..+..+..-.....+.-.+..+++.|-+....
T Consensus 95 ~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q 174 (510)
T KOG3574|consen 95 FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQ 174 (510)
T ss_pred hccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHH
Confidence 999986543 34444444444442111 11111 1223333333333344555566666677777777666
Q ss_pred HHHHhHhHhHHHHHH
Q 011365 422 SSIGRIGGMVCPLVA 436 (487)
Q Consensus 422 ~~~~~~g~~~~~~i~ 436 (487)
......|.+++..++
T Consensus 175 ~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 175 SVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHhhhHHhhccee
Confidence 666667776665543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.19 Score=48.47 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=90.5
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhccccc
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIY 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (487)
.....+......+..++.+.+.|+++.|+.+.++..+.....+.+.+.+ .+..+....+.|++.+..+...-.+.+|..
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcC
Confidence 4446677777888999999999999999999999999888888777765 456677788889998888888899999999
Q ss_pred CCcchhHHHHHHHHHHhHhHhHHHHHHH
Q 011365 410 PTSVRTTGVGVASSIGRIGGMVCPLVAV 437 (487)
Q Consensus 410 p~~~~~~~~g~~~~~~~~g~~~~~~i~g 437 (487)
.++.+.+..++...+...+.++|..+.-
T Consensus 132 t~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 132 TRETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 9999999999999998888887766554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.6 Score=46.91 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=88.4
Q ss_pred cccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHhHhcc-------C-------C------c-----
Q 011365 327 DINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMSSMFFCCCIFLVPLLFQ-------Q-------P------K----- 380 (487)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-------~-------~------~----- 380 (487)
..+.-.............+++++++|. +||-+++.++..+..+++.++... + . .
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~ 152 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL 152 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence 333444445555556667889999997 588888888877776665444310 0 0 0
Q ss_pred chHHHHHHHHHHHHHhhhHHHhhhcccccC---C-c--chhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHH
Q 011365 381 GLTTGLLFGARICITVTFTVVYVYAPEIYP---T-S--VRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFEL 454 (487)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~-~--~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 454 (487)
..+...+.+..++.++.-|...++-+|-++ + + .+..-+.......+.|..++..+.-++-+..+|...+-+..+
T Consensus 153 ~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~ 232 (571)
T KOG1237|consen 153 AVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTV 232 (571)
T ss_pred HHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHH
Confidence 122333444445666777888888888887 2 2 223567777778889999988888888888887766666655
Q ss_pred HHHHHHHh
Q 011365 455 VILLSGIS 462 (487)
Q Consensus 455 ~~~~~~~~ 462 (487)
+..++.++
T Consensus 233 ~~~lai~i 240 (571)
T KOG1237|consen 233 LNALAILI 240 (571)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=4.7 Score=40.26 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhh-chhhhHHHHHHhHHHHHH
Q 011365 95 FFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRLGWRWLLGLSAFPSSL 167 (487)
Q Consensus 95 ~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~-~~~~w~~~f~~~~~~~~i 167 (487)
...++.++..|+. |....+..+.. .++-++..|.......+|.++|+++.+++. +..|-....++.+.+.++
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~ 188 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3445566666766 55555444322 223467788888888999999988877654 466755444444444433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.01 E-value=3.7 Score=39.89 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=23.9
Q ss_pred HhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 401 VYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
.-.+.-.+..+++++-|........++|.+++-.++=.+
T Consensus 139 VDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 139 VDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred eehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 334444556677777777766666667777765554333
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.46 E-value=30 Score=31.90 Aligned_cols=45 Identities=7% Similarity=-0.108 Sum_probs=35.0
Q ss_pred cccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011365 327 DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL 371 (487)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 371 (487)
...+..+..+++...+.+.+.|.+..++||-.....+.+.-...+
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li 354 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLI 354 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 344677778888888899999999999999988877766554433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=84.60 E-value=1.2 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred hcccccccchhhhH-HHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011365 42 LNLHFSESDQSSFS-FSLFGRL-----------LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLL 94 (487)
Q Consensus 42 ~~~~~~~~~~~~~~-~~~~G~~-----------r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 94 (487)
++.+++..+.+++. .-+.|++ +..+++.+..+.+..++..+.+++.++.+.+.
T Consensus 20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 46677777776654 3334443 34557888899999999999999998876653
|
Note that many members are hypothetical proteins. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.15 E-value=6.5 Score=35.65 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHh
Q 011365 76 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV 148 (487)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l 148 (487)
++.+......+.|+++..++.-+.-|+-.|.. ....--+.+-.++++|..+++....+-++|..++..++-.+
T Consensus 328 ~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 328 LFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 34444556778899999999999999877776 56666677778889999999999999999999888776554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.71 E-value=9.4 Score=36.25 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 384 TGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
.....+.+++.+......+...++ +|+++..
T Consensus 121 ~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 121 LIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred HHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 344455555555555666666554 4555433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.33 E-value=12 Score=35.04 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=66.4
Q ss_pred cchhhhHHHHHHHH--HhhhhHHHHHHHHHHHHH------HHHHhhc------hhHHHHHHHHHHHhhhccch---HHHH
Q 011365 49 SDQSSFSFSLFGRL--LLSFRKGFLITAIVTSAA------GLLSAFA------PNYYLLLFFRCLVGLGLGGG---PVLA 111 (487)
Q Consensus 49 ~~~~~~~~~~~G~~--r~Grr~~l~~~~~~~~~~------~~~~~~~------~~~~~l~~~r~l~G~~~g~~---~~~~ 111 (487)
+...++.++++|.. +..|+|++...+.+.-++ .++..+. .+++.+..+-++.-...+.. ..+.
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33345667778877 888888877755543332 2233332 24555544444433222221 1111
Q ss_pred HHH--Hhhc----CCCCchhHH---HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHH
Q 011365 112 SWF--LEFI----PAPNRGFWM---VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 168 (487)
Q Consensus 112 ~~i--~~~~----~~~~r~~~~---~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~ 168 (487)
+.+ .||. ..+.+.... +.....-..-.++.|.+.+.+....+-|..-.+.++..++.
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vs 218 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVS 218 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHH
Confidence 211 2444 344455444 44445555567889999999988888888666666665553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 16/130 (12%)
Query: 61 RLLLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGP-----VLASWFL 115
R+ L G ++ A V G + + ++ L G G G + W+
Sbjct: 92 RVFLPA--GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW- 148
Query: 116 EFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLL----GLSAFPSSLLLL 170
RG + ++ VG + + L M W L + +
Sbjct: 149 ---SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205
Query: 171 LYSVTPESPR 180
+ TP+S
Sbjct: 206 MMRDTPQSCG 215
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 60/416 (14%), Positives = 105/416 (25%), Gaps = 154/416 (37%)
Query: 83 LSAFAPNYYLLLFFRCLVGLGLGG-G-PVLASWFLEFIP----APNRGFW---------- 126
L P +L+ G+ G G +A + FW
Sbjct: 144 LLELRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 127 --MVIFQTFWT-VGTILEAGIAWLVMPRLGWRW-------LLGLSAFPSSLLLL------ 170
+ + Q + + +L LL + + LL+L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 171 ------------L-----YSVT----PESPRYLCL----KGRT-AEARHVLEKIAKINGT 204
L VT + ++ L T E + +L K
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 205 KLPS-------------GNLVSD-------WEHELQNK--SLLSSSSNEDDTTPKEMAR- 241
LP + D W+H +K +++ SS N + P E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKM 374
Query: 242 -------DEDS-ISEA------KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL 287
+ I ++ D + +L K +L+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----------------KLHKYSLVE 418
Query: 288 -WLVFFGNAFSYYGLVL-LTTELNNGQ---NKCVSNELQSGKSRD-----INYGDVFITS 337
+ S + L L +L N V + K+ D Y D + S
Sbjct: 419 KQ--PKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 338 F--------------AEFPGLLLAAAMVD-R-LGRKLSMSSMFFCCCIFLVPLLFQ 377
F + L D R L +K+ S + ++ L Q
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQ 526
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.64 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.6 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.57 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.54 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.46 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.89 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=303.18 Aligned_cols=365 Identities=20% Similarity=0.260 Sum_probs=264.4
Q ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHh------------------hchhHHHHHHHHHHHhhhccch-HHHHHH
Q 011365 55 SFSLFGRL--LLSFRKGFLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASW 113 (487)
Q Consensus 55 ~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~ 113 (487)
++.+.|.+ |+|||+++.++.+++.++.++++ +++|+++++++|+++|+|.|.. +....+
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~ 150 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMY 150 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665 99999999999999999999988 4789999999999999999999 888899
Q ss_pred HHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhc--------hhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhc
Q 011365 114 FLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLK 185 (487)
Q Consensus 114 i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~--------~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~ 185 (487)
+.|+.|+++|++..++.+.+..+|.++++.++..+.. ..+||..+.+..++.++.++..+++||+|+|+..+
T Consensus 151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~ 230 (491)
T 4gc0_A 151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR 230 (491)
T ss_dssp HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT
T ss_pred HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc
Confidence 9999999999999999999999999999988877643 34799999999999998888899999999999999
Q ss_pred CChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccc
Q 011365 186 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN 265 (487)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
++.+++++.+++....+... .+..+. +...+++ ++
T Consensus 231 ~~~~~a~~~l~~~~~~~~~~-----------~~~~~~--------------------~~~~~~~-------------~~- 265 (491)
T 4gc0_A 231 GKQEQAEGILRKIMGNTLAT-----------QAVQEI--------------------KHSLDHG-------------RK- 265 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-----------HHHHHH--------------------HHHHHHH-------------HH-
T ss_pred CchhHHHHhHHHhcCCchhH-----------HHHHHH--------------------HHHHHhh-------------hh-
Confidence 99999988887765432110 000000 0000000 00
Q ss_pred cchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHH
Q 011365 266 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL 345 (487)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (487)
.......++.+ +.........+......+.+..+.+.+.+..+ .+.........+.++...++.+
T Consensus 266 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 266 ---TGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----------ASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp ---HTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----------CCccchhhHHHHHHHHHHHHHH
Confidence 00111122221 22222333333344444555566666654433 3333445566677788889999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc---cC-CcchHHHHHHHH-HHHHHhhhHHHhhhcccccCCcchhHHHHH
Q 011365 346 LAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF---QQ-PKGLTTGLLFGA-RICITVTFTVVYVYAPEIYPTSVRTTGVGV 420 (487)
Q Consensus 346 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 420 (487)
+.+++.||+|||+.+..+...+.++++.+.. .. +........++. .....+..++.+.+.+|.+|++.|+++.|+
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 9999999999999998888877776665542 12 222222222222 223334557888999999999999999999
Q ss_pred HHHHHhHhHhHHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHheeeccccCCCCCCCCCC
Q 011365 421 ASSIGRIGGMVCPLVAVALVHG------CHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 479 (487)
Q Consensus 421 ~~~~~~~g~~~~~~i~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
.+.++++++++++.+.+.+.+. .+....+++++++++++.++.+++.||||++++||.+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 9999999999999888766542 3455678888888889888888899999999988644
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=280.36 Aligned_cols=343 Identities=16% Similarity=0.186 Sum_probs=257.6
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAF----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW 126 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~ 126 (487)
+..++.|.+ |+|||++++++.++.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 335556666 999999999999999999999999 999999999999999999988 8888999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhchhh-hHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 127 MVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 127 ~~~~~~~~~lG~~i~~~~~~~l~~~~~-w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+++...+.++|.+++|.+++++.+..+ ||+.|++.+++.++. ++..+++||+|+....+++.+..
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 223 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK------------- 223 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------------
Confidence 999999999999999999999888888 999999998888776 45567788877632111100000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
++.+. +.+ ++ .+++........+++++++. +
T Consensus 224 --------~~~~~-----------------------~~~----~~-----------~~~~~~~~~~~~~~~~~~~~---~ 254 (451)
T 1pw4_A 224 --------NDYPD-----------------------DYN----EK-----------AEQELTAKQIFMQYVLPNKL---L 254 (451)
T ss_dssp --------CC---------------------------------------------------CCTHHHHHHTSSCHH---H
T ss_pred --------ccccc-----------------------cch----hh-----------hhcccccccchHHHHHcCHH---H
Confidence 00000 000 00 00000000012455666533 3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh--hhhHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMSS 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~ 362 (487)
+...+..+.....++....+.|.+.++. .+.+....+.......++.+++.++.+++.||+ ++|+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 4444555555666667777888887552 126666667888888999999999999999999 99988877
Q ss_pred HHHHHH-HHHHhHhccC--CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhH-hHhHHHHHHHH
Q 011365 363 MFFCCC-IFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVA 438 (487)
Q Consensus 363 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~i~g~ 438 (487)
+..+.. ++.+.+.+.. +.+......++.+++.+...+....+..|.+|++.|++++|+.+.+.++ |..++|.+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665 5555555442 4455566667778888888888899999999999999999999999999 99999999999
Q ss_pred HHhhccchhHHHHHHHHHHHHHHheeecc
Q 011365 439 LVHGCHQTAALILFELVILLSGISVLLFP 467 (487)
Q Consensus 439 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
+.+..|+...+++.+++.+++.++.++..
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=261.67 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=246.2
Q ss_pred hcccccccchhh----------hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhhhccc
Q 011365 42 LNLHFSESDQSS----------FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLS---AFAPNYYLLLFFRCLVGLGLGG 106 (487)
Q Consensus 42 ~~~~~~~~~~~~----------~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~ 106 (487)
++++.+..+.++ +..++.|.+ |+|||++++++.++.+++.+++ .++++++.++++|++.|++.+.
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 133 (438)
T 3o7q_A 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC 133 (438)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHH
Confidence 355555555544 334556666 9999999999999999999999 8899999999999999999999
Q ss_pred h-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhh-chhh-------------------------hHHHHH
Q 011365 107 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRLG-------------------------WRWLLG 159 (487)
Q Consensus 107 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~-~~~~-------------------------w~~~f~ 159 (487)
. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +..+ ||+.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 213 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM 213 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH
Confidence 8 888899999999999999999999999999999999999987 4443 999998
Q ss_pred HhHHHHHHHHHHHHhc--CCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcc
Q 011365 160 LSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 237 (487)
Q Consensus 160 ~~~~~~~i~~~~~~~l--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
+.+++.++..+..++. ||+++.. ++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~------------------------------------------------ 242 (438)
T 3o7q_A 214 IIVAIVLLVALLIMLTKFPALQSDN---HSDA------------------------------------------------ 242 (438)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTTC---CCCS------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCcccccc---cccc------------------------------------------------
Confidence 8877776665444443 3332200 0000
Q ss_pred cccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hccccccc
Q 011365 238 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL-NNGQNKCV 316 (487)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (487)
++.....+++++++++..+.. .+..+......+....+.|.+ .++.
T Consensus 243 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---- 289 (438)
T 3o7q_A 243 --------------------------KQGSFSASLSRLARIRHWRWA---VLAQFCYVGAQTACWSYLIRYAVEEI---- 289 (438)
T ss_dssp --------------------------STTSHHHHHHHHTTCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred --------------------------cccchhhhHHHHHhChHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 000011166677776544433 333344444555666677777 5443
Q ss_pred cccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHh
Q 011365 317 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
.+.+....+....+..++.++++++.+++.||++||+.+..+.++.+++.+++.+.++.+ .....++.+++.+.
T Consensus 290 -----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 290 -----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI 363 (438)
T ss_dssp -----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHTT
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHH
Confidence 125666667888888999999999999999999999999998888888877777665543 34445777888888
Q ss_pred hhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q 011365 397 TFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCH-QTAALILFELVILLSGI 461 (487)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~ 461 (487)
..+..+++..|.+|++ ++++.++.. ...+|+.++|.+.|++.|..| +...+++.+++.++..+
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8999999999999977 888888877 778999999999999999998 77676665554444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=248.09 Aligned_cols=372 Identities=11% Similarity=-0.016 Sum_probs=232.5
Q ss_pred hHHHHHHHH--H-hhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCC--chhHH
Q 011365 54 FSFSLFGRL--L-LSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWM 127 (487)
Q Consensus 54 ~~~~~~G~~--r-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~ 127 (487)
++.++.|.+ | +|||+++.++.++.+++.+++++++|++.++++|++.|++.+.. +...+++.|++|+++ |+.++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 445566766 9 89999999999999999999999999999999999999999998 888899999999988 77788
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc-CCCch----hhhhcCChHHHHHHHHH-----
Q 011365 128 VIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT-PESPR----YLCLKGRTAEARHVLEK----- 197 (487)
Q Consensus 128 ~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l-~e~p~----~~~~~~~~~~~~~~~~~----- 197 (487)
++.+.+.++|..++|.+++.+.+..|||+.|++.++..++.++...+. |+..+ ....+.+.++.++..+.
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 889999999999999999999998999999999887777665444332 22111 00011112222221111
Q ss_pred --------HHhHhCCCCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchh
Q 011365 198 --------IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGI 269 (487)
Q Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (487)
.....+.. +. +......... ........ .....+. .
T Consensus 229 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~-------------------~~~~~~~~---------~~~~~~~-~- 272 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWN-SL-----PAYINLLTIV-------------------AIAIPVFY---------FAWMISS-V- 272 (491)
T ss_dssp HHHHHHHHHHHHHSSC-CT-----THHHHHHHHH-------------------HHHHHHHH---------HHHHC-----
T ss_pred HHHHHHHHHHHhccCc-cc-----ccchhhhhHH-------------------HHHHHHHH---------HHHHhhc-c-
Confidence 00000000 00 0000000000 00000000 0000000 0
Q ss_pred hHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHH
Q 011365 270 TALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAA 349 (487)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 349 (487)
...... ++.....+..+...+.....+.....+.+.+..+.. +.+....+.......++.+++.++.++
T Consensus 273 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 273 -KVTSTE-HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV---------DSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC---------CCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred -cccHHH-HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh---------ccCccCHHHHhccchHHHHHHHHHHHH
Confidence 000000 000011222233333333444444445555543321 133344567777888888889999999
Q ss_pred HHhhhhhhHHHH-----HHHHHHHHHHHhHhcc---------CCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchh
Q 011365 350 MVDRLGRKLSMS-----SMFFCCCIFLVPLLFQ---------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRT 415 (487)
Q Consensus 350 l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (487)
+.||++||+... .+..+.+++.+++... .+.+......++.+++.+...+..+.++.|.+|++.|+
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 999999886543 6666666666555442 24455566677788888888899999999999999999
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHheeeccccCCCC
Q 011365 416 TGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
++.|+.+...++|..++|.+.+.+.+. ++...+..++++.+++.++.++..++.+++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877664 556667777777777666666665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-29 Score=235.05 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=223.8
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 130 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 130 (487)
+..++.|.+ |+|||+++.++.++.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 445556766 999999999999999999999999999999999999999999988 88889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCC
Q 011365 131 QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG 209 (487)
Q Consensus 131 ~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~-~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (487)
+.+.++|.+++|.+++++.+..+||..|++.++..++..+ ...++||+++...++++
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 187 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR---------------------- 187 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC----------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc----------------------
Confidence 9999999999999999999989999999998888777654 45566776542100000
Q ss_pred CCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHH
Q 011365 210 NLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWL 289 (487)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (487)
..++++++++++. ++...+
T Consensus 188 ----------------------------------------------------------~~~~~~~~~~~~~---~~~~~~ 206 (375)
T 2gfp_A 188 ----------------------------------------------------------LLTSYKTLFGNSG---FNCYLL 206 (375)
T ss_dssp ----------------------------------------------------------TTTCSTHHHHHHH---HHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHhcCcc---hHHHHH
Confidence 0002233344432 333334
Q ss_pred HHHHHHHHHHhhhhhhhhhhcc-ccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH-H
Q 011365 290 VFFGNAFSYYGLVLLTTELNNG-QNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-C 367 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~ 367 (487)
..+......+....+.|.+.++ .+ .+....+.......++.+++.++.+++.||.+++. ..+..+ .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~ 274 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLG----------LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCL 274 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHH----------HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4444455555666666766644 22 55555677788888888999999999999998732 222222 2
Q ss_pred HHHHHh--Hhc--cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc
Q 011365 368 CIFLVP--LLF--QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 368 ~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
..+... ... ..+.+......++.+++.+...+...++..|.+| ++|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 275 LAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222221 111 1234445566677788888888999999999998 78999999999999999999999999998866
Q ss_pred cchhHHHH
Q 011365 444 HQTAALIL 451 (487)
Q Consensus 444 g~~~~~~~ 451 (487)
++...++.
T Consensus 354 ~~~~~~~~ 361 (375)
T 2gfp_A 354 QGSLGLLM 361 (375)
T ss_dssp HHHHHHHH
T ss_pred cccHHHHH
Confidence 55444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=218.47 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=106.8
Q ss_pred hHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHH
Q 011365 54 FSFSLFGRL--LL-SFRKGFLITAIVTSAAGLLSAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMV 128 (487)
Q Consensus 54 ~~~~~~G~~--r~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~ 128 (487)
++.++.|.+ |+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 334556666 99 999999999999999999999999 9999999999999999998 888899999999999987666
Q ss_pred H---HHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhc
Q 011365 129 I---FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 175 (487)
Q Consensus 129 ~---~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l 175 (487)
. ...+.++|.+++|.+++.+.+..+||..|++.+++.++..+...+.
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 9999999999999999999888899999999888877765554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=216.86 Aligned_cols=341 Identities=14% Similarity=0.067 Sum_probs=210.7
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHH---HHHhhchhHH-HHHHHHHHHhhhccch-HHHHHHHHhhcCC--CCch
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAG---LLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPA--PNRG 124 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~--~~r~ 124 (487)
++.++.|.+ |+|||++++++..+.+++. ....+++... .++..+++.|++.+.. +...+.+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 446667777 9999999999888775532 2223333221 2345566666665544 3333333333332 3567
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
...+......++|..++|.+++++.+ .+||..|++.+++.++..+..++.+|+|+. +.+.++ .+
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~ 201 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV 201 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc
Confidence 77788888889999999999999876 589999998877755554444444433310 000000 00
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
+ + +.++....+++++++++..+..
T Consensus 202 ~-------------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 202 G-------------------------A-------------------------------NHSAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp S-------------------------S-------------------------------CCCCCCHHHHHHHTTCHHHHHH
T ss_pred c-------------------------c-------------------------------ccccccHHHHHHHhcCCchhhH
Confidence 0 0 0000011145566665444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHH
Q 011365 285 LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 364 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 364 (487)
... .+.....++....+.|.+..+... ..+.+....+....+..++.+++.++.+++.||+|||+.+..+.
T Consensus 226 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~ 296 (417)
T 2cfq_A 226 SLY---VIGVSCTYDVFDQQFANFFTSFFA------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG 296 (417)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHTSS------SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHh------ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 322 222222223333334544321100 00011222245556666778889999999999999999988888
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHH-HHHHhHhHhHHHHHHHHHHhhc
Q 011365 365 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVA-SSIGRIGGMVCPLVAVALVHGC 443 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~i~g~l~~~~ 443 (487)
.+.++..+.+.+.++.+...+..++.+++.+...+..+.++.|.+|++.|++++++. +...++|+.++|.+.|++.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 297 TIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 887777666665555554445555556666666677788999999999999999994 7888899999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHheeeccccCCCCCC
Q 011365 444 HQTAALILFELVILLSGISVLLFPFETTGRGL 475 (487)
Q Consensus 444 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
|+...+.+.+++.+++.++.++..||+++.++
T Consensus 377 g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 377 GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 87777777777777776666666666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=143.85 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHH
Q 011365 281 IKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSM 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 360 (487)
++......+..+......+......|.+.++ . .+..+.++..+...++..++.++.|+++||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ----------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS----------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 3444555555566666656666667776632 2 4455568888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc----cCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLF----QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVA 436 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 436 (487)
..+.++.+++.++..+ .++.+.+.+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888 788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-chhHHHHHHHHHHHHHHheeeccccCC
Q 011365 437 VALVHGCH-QTAALILFELVILLSGISVLLFPFETT 471 (487)
Q Consensus 437 g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
+++.+..| |...+++.+++.++..++.++..||++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 99999888 998888888777776666555555543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=139.75 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHH
Q 011365 282 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 361 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 361 (487)
+.........+...+.........|.+.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~ 95 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFT----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHH
Confidence 44455555566666666666667777766555 67777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH---hccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHH
Q 011365 362 SMFFCCCIFLVPL---LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVA 438 (487)
Q Consensus 362 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 438 (487)
.+.++.+++.++. ...++.+.+.+..++.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887 6778888888889999999999999999999999999999999999999999999999999999
Q ss_pred HH-hhcc
Q 011365 439 LV-HGCH 444 (487)
Q Consensus 439 l~-~~~g 444 (487)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 5544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=139.31 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhh-hhhhHHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMS 361 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~ 361 (487)
..+......+...+.++....+.+.+..+.- ...+.+.+..+.++..+...++..++.++.|+++|| +|||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLI----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 3444555566666666666666666554310 000123666677888999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcc--hhHHHHHHHHHHhHhHhHHHHHHHHH
Q 011365 362 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV--RTTGVGVASSIGRIGGMVCPLVAVAL 439 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~i~g~l 439 (487)
.+.++.+++.++..+.++.+...+..++.|++.+...+...+++.|.+|+++ |+.++++.+....+|..++|.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888888888899999999999999999999999988 77888889999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHheeeccc
Q 011365 440 VHGCHQTAALILFELVILLSGISVLLFPF 468 (487)
Q Consensus 440 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
.+..||...+++.++..+++.++..+..+
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999998888877666665555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=135.66 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011365 289 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCC 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 368 (487)
...+.............|.+.++.+ .+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLN----------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS----------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3334444444445555666665544 666667888889999999999999999999999999999999998
Q ss_pred HHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhccchhH
Q 011365 369 IFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAA 448 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 448 (487)
++.+...+.++.+......++.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+++.+..+|...
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 88888887777777788888899999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHheeeccccCCCC
Q 011365 449 LILFELVILLSGISVLLFPFETTGR 473 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+++.+++.++..+...+..||++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCC
Confidence 8888877777766566666665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=132.65 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccc-cccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhh-hhhHHH
Q 011365 283 STLLLWLVFFGNAFSYYGLVLLTTELNNGQ-NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSM 360 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~ 360 (487)
.++...+..+...+.++....+.+.+..+. +.. .+.+.+..+.+...+...++..++.++.|+++||+ |||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLS----IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC----CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344455556666666666666666655321 100 00014556668888899999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhHhccC-CcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHH---HHHHHhHhHhHHHHHH
Q 011365 361 SSMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGV---ASSIGRIGGMVCPLVA 436 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~i~ 436 (487)
..+.++.+++.+++.+.. +.+...+..++.|++.+...+...+++.|.+|+++|+++.+. .+...++|..++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888777 777777788888999999999999999999999999776666 8888999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHheee
Q 011365 437 VALVHGCHQTAALILFELVILLSGISVLL 465 (487)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (487)
+.+.+..||...+++.+++.++..++..+
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889888888777766665554433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=107.27 Aligned_cols=113 Identities=15% Similarity=0.013 Sum_probs=98.2
Q ss_pred chhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhc------------------cCCcchHHHHHHHHH
Q 011365 330 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF------------------QQPKGLTTGLLFGAR 391 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 391 (487)
++..+...++.++|.++.|+++||+|||+.+.++.++..++.++..+ .++.+.+++.-++.|
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999888887776553 455667788889999
Q ss_pred HHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhh
Q 011365 392 ICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~ 442 (487)
++.++..+....++.|..|+++|+...++.+.....|..+++.+...+...
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 999999999999999999999999999999999999998888887766543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=101.50 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=102.4
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHH-HH
Q 011365 56 FSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI-FQ 131 (487)
Q Consensus 56 ~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~-~~ 131 (487)
..+.|.+ |+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++.|.+|++.|+.+.+. .+
T Consensus 276 ~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3444555 999999999999988888888888888888888888888887666 6667899999999999999998 47
Q ss_pred HHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHH-HhcCCCch
Q 011365 132 TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPESPR 180 (487)
Q Consensus 132 ~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~-~~l~e~p~ 180 (487)
....+|..++|.+++++.+..|++..|.+.+++.++..+.. ...||.++
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 88889999999999999888899999998888887775543 44565443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 43/410 (10%), Positives = 99/410 (24%), Gaps = 16/410 (3%)
Query: 70 FLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVI 129
+L+ A L + L F + + G + + +I
Sbjct: 38 YLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97
Query: 130 FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTA 189
+ + +L G V S +
Sbjct: 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 157
Query: 190 EARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEA 249
H + L + ++ + +
Sbjct: 158 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPI 216
Query: 250 KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 309
+E K++ + + + K + + YG++ +
Sbjct: 217 EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 276
Query: 310 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCI 369
+ D + F+ +A PG LL M D++ R ++ F +
Sbjct: 277 KEVK---------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 327
Query: 370 FLVPLLF-----QQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSI 424
+ + + + I ++ ++A E+ P T G
Sbjct: 328 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 387
Query: 425 GRIGGMVC-PLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGR 473
G +GG V + V ++ +L+ I +++ R
Sbjct: 388 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.57 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.13 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-33 Score=268.59 Aligned_cols=388 Identities=15% Similarity=0.143 Sum_probs=266.5
Q ss_pred cCchHHHHHHHHHHHhcccccccccCccccchhcccccccchhhhH----------HHHHHHH--HhhhhHHHHHHHHHH
Q 011365 10 VSPCSVLLICFAMIFCDIAFDVPELSWNTTTLLNLHFSESDQSSFS----------FSLFGRL--LLSFRKGFLITAIVT 77 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~G~~--r~Grr~~l~~~~~~~ 77 (487)
+.+|.++..+++.+... ..+...++...+.+.+++++..+.+++. .++.|.+ |+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAY-YLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 34677777777666665 3444445555555566777777766533 3445666 999999999999999
Q ss_pred HHHHHHHhhch----hHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHHHHHHHHhHHHHHHHHHHhhch-
Q 011365 78 SAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR- 151 (487)
Q Consensus 78 ~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i~~~~~~~l~~~- 151 (487)
+++.+++++++ +++.+++.|++.|++.|.. +...+++.|++|+++|++++++.+.+..+|.++++.+++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 99999988764 6788999999999999988 88889999999999999999999999999999999988877654
Q ss_pred hhhHHHHHHhHHHHHHH-HHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCCCCCCCCCCcchhhhhhhhhcccCCCC
Q 011365 152 LGWRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 230 (487)
Q Consensus 152 ~~w~~~f~~~~~~~~i~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (487)
.+||+.|++.+++.++. ++.+.+++|.|+........+..+ +...+
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~------------ 226 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN---------------------DYPDD------------ 226 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC---------------------C----------------
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh---------------------hcccc------------
Confidence 48999999988877776 455566666664221111000000 00000
Q ss_pred CCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 011365 231 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN 310 (487)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (487)
. .+..++.........+..++++. .+......+......+....+.|.+..
T Consensus 227 ---------------~-----------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T d1pw4a_ 227 ---------------Y-----------NEKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLK 277 (447)
T ss_dssp -----------------------------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred ---------------h-----------hhccccccchhhHHHHHHHcCch---HHHHHHHhhhhhhhhhcchhhhhhhcc
Confidence 0 00000000111124555566533 333444445555556666777777765
Q ss_pred cccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHhHhc--cCCcchHHH
Q 011365 311 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC---CCIFLVPLLF--QQPKGLTTG 385 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~ 385 (487)
+.. +.+....+....+..+..+++.++.|++.||++|++........ ..++.+.+.. ..+.+...+
T Consensus 278 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T d1pw4a_ 278 EVK---------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 348 (447)
T ss_dssp TBS---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred ccc---------ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHH
Confidence 432 25556667788888899999999999999999876543322222 2222222222 234455556
Q ss_pred HHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHHHHHhHh-HhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhee
Q 011365 386 LLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIG-GMVCPLVAVALVHGCHQTAALILFELVILLSGISVL 464 (487)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 464 (487)
..++.+++..+..+....+..|.+|++.|+++.|+.+.+.+++ ..++|.+.|++.|..|+...+++..++.+++.++..
T Consensus 349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888889999999999999999999999998874 566899999999999998888877777776666555
Q ss_pred ecccc
Q 011365 465 LFPFE 469 (487)
Q Consensus 465 ~~~~~ 469 (487)
.+.++
T Consensus 429 ~~~~~ 433 (447)
T d1pw4a_ 429 VVMIG 433 (447)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.8e-25 Score=210.18 Aligned_cols=339 Identities=14% Similarity=0.007 Sum_probs=222.2
Q ss_pred hHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHhhchhHHHH----HHHHHHHhhhccch-HHHHHHHHhhcC--CCCch
Q 011365 54 FSFSLFGRL--LLSFRKGFLITAIVTSAAGLLSAFAPNYYLL----LFFRCLVGLGLGGG-PVLASWFLEFIP--APNRG 124 (487)
Q Consensus 54 ~~~~~~G~~--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~g~~-~~~~~~i~~~~~--~~~r~ 124 (487)
+..++.|.+ |+|||++++++.....++..+..+.++.... ++.+++.+.+.+.. ........+..+ .+++.
T Consensus 58 i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T d1pv7a_ 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhH
Confidence 445667777 9999999999999999988888877665543 44455555555444 333333332222 23445
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhchhhhHHHHHHhHHHHHHHHHHHHhcCCCchhhhhcCChHHHHHHHHHHHhHhCC
Q 011365 125 FWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT 204 (487)
Q Consensus 125 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
+..+........+..+++.+++.+.+..+|+..+.......++..+..+..+|.|... ++.++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------- 203 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA---TVANAVGA----------- 203 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHHS-----------
T ss_pred HHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccch---hhhhhhhh-----------
Confidence 6677788888899999999999887654444444444444444566666667766421 11111000
Q ss_pred CCCCCCCCcchhhhhhhhhcccCCCCCCCCCcccccccchhhhhhhhcccccchhhhhccccchhhHHHHhhChHHHHHH
Q 011365 205 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
+.+..........++++..+..
T Consensus 204 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 225 (417)
T d1pv7a_ 204 ----------------------------------------------------------NHSAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp ----------------------------------------------------------CCCCCCHHHHHHHTTSSHHHHH
T ss_pred ----------------------------------------------------------hcccccccccccccccccccch
Confidence 0000000022222222222222
Q ss_pred HHHHHH-HHHHHHHHHhhhhhhhhhhccccccccccccCCccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHH
Q 011365 285 LLLWLV-FFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 363 (487)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 363 (487)
...... .............+.+....+.+ .+............++..++..+.+++.||.++|+.+..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 295 (417)
T d1pv7a_ 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGE----------QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCHH----------HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhccccccccccccccc----------cchhhhcccccccccccccchhhhhhhhcccccccchhhh
Confidence 222222 22222222222222222221111 2333335666677788888999999999999999999999
Q ss_pred HHHHHHHHHhHhccCCcchHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhHHHHHHH-HHHhHhHhHHHHHHHHHHhh
Q 011365 364 FFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVAS-SIGRIGGMVCPLVAVALVHG 442 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~i~g~l~~~ 442 (487)
..+.+++.+.+.+.++.+...+..++.+++.+...+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|++.|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~ 375 (417)
T d1pv7a_ 296 GTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888999999999999999999999999999999865 45679999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHheeeccccCCCCC
Q 011365 443 CHQTAALILFELVILLSGISVLLFPFETTGRG 474 (487)
Q Consensus 443 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
.|+...+++.+++.++..++..+..++++..+
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99988888888888877777777665554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=5.4e-14 Score=134.04 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=123.8
Q ss_pred CccccccchhhhhhhhcchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHhcc----CCcchHHHHHHHHHHHHHhhh
Q 011365 323 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----QPKGLTTGLLFGARICITVTF 398 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 398 (487)
+.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++..+. .+.+...+..++.+++.+...
T Consensus 55 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (447)
T d1pw4a_ 55 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 134 (447)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhh
Confidence 3788888999999999999999999999999999999999998888877766543 466777788888999999999
Q ss_pred HHHhhhcccccCCcchhHHHHHHHHHHhHhHhHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHheeeccccC
Q 011365 399 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC-HQTAALILFELVILLSGISVLLFPFET 470 (487)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. +|...+++.+.+.++..++.+...++.
T Consensus 135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999998877765 566667776666666655555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.5e-10 Score=108.00 Aligned_cols=114 Identities=10% Similarity=0.027 Sum_probs=102.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhccch-HHHHHHHHhhcCCCCchhHHHHH-HHHHHHhHHH
Q 011365 63 LLSFRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTIL 140 (487)
Q Consensus 63 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~i 140 (487)
|+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+.. +...+++.|.+|+++|+++.++. +....+|..+
T Consensus 285 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 364 (417)
T d1pv7a_ 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred ccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 88889999999999999999975 5667899999
Q ss_pred HHHHHHHhhchhhhHHHHHHhHHHHHHHHHH-HHhcC
Q 011365 141 EAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTP 176 (487)
Q Consensus 141 ~~~~~~~l~~~~~w~~~f~~~~~~~~i~~~~-~~~l~ 176 (487)
+|.+.+++.+..||+..|++.+++.++..+. .+.++
T Consensus 365 ~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988888777444 44444
|