Citrus Sinensis ID: 011388
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | no | 0.997 | 0.997 | 0.780 | 0.0 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.997 | 0.995 | 0.783 | 0.0 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.862 | 0.893 | 0.473 | 1e-109 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.924 | 0.971 | 0.443 | 1e-109 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.950 | 0.960 | 0.428 | 1e-107 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.946 | 0.980 | 0.419 | 1e-103 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.975 | 0.957 | 0.403 | 1e-102 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.889 | 0.921 | 0.431 | 2e-96 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.891 | 0.939 | 0.437 | 1e-95 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.897 | 0.914 | 0.424 | 2e-94 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/488 (78%), Positives = 441/488 (90%), Gaps = 2/488 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
+V+ AF+L+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSEILPVNIK
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIK 419
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
LAGS+ATLANW SW++TMTAN LL WSSGGTF +YG+VCAFTV FV+LWVPETKG++L
Sbjct: 420 GLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTL 479
Query: 480 EEIQFSFR 487
EE+Q FR
Sbjct: 480 EELQSLFR 487
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/489 (78%), Positives = 443/489 (90%), Gaps = 3/489 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRRLLL+ISS GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI 418
S +V+VAF+L+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSEILPVNI
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNI 419
Query: 419 KSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478
K LAGS+ATL NW VSW+VTMTAN LL WSSGGTF +Y +VC FTV FVSLWVPETKG++
Sbjct: 420 KGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKT 479
Query: 479 LEEIQFSFR 487
LEEIQ FR
Sbjct: 480 LEEIQALFR 488
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/431 (47%), Positives = 297/431 (68%), Gaps = 11/431 (2%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357
G+NG+ FY+S+IF +AG+ SS + + VVQ+ T + LMDK+GRR LLLIS++G
Sbjct: 282 GVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 ASFFLVSVAFFLEGFVSE---DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL 414
FLV ++F L+ FV + D+ + ++ G+L G SFSLG+G IPWVIMSEI
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYLALTGVLVYTG------SFSLGMGGIPWVIMSEIF 393
Query: 415 PVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPET 474
P++IK AGS+ T+ +W+ SWI++ T NFL++W+ GTF ++ VC TV FV+ VPET
Sbjct: 394 PIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPET 453
Query: 475 KGRSLEEIQFS 485
KGR+LEEIQ+S
Sbjct: 454 KGRTLEEIQYS 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/455 (44%), Positives = 297/455 (65%), Gaps = 5/455 (1%)
Query: 29 RQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFS 88
R+ + + A D V V G FG GYSSP QA I +DL LTI+EFS
Sbjct: 9 REPLVDKNMAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFS 68
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+FGSL GAM+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL
Sbjct: 69 LFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLAT 128
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208
G+G+G SY VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++
Sbjct: 129 GYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGII 188
Query: 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT 268
PC GLFFIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R
Sbjct: 189 PCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLP 248
Query: 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVV 328
+ +L ++RY ++I GL+V QQ GING+ FY+S+IF AG + + V+
Sbjct: 249 KAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVL 307
Query: 329 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSL 388
QVV T +N ++D+AGR+ LLL+S++G+ + +V+F+L+ + + +L++
Sbjct: 308 QVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK----VHDMAHEAVPVLAV 363
Query: 389 VGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS 448
VG++ + SFS G+GA+PWV+MSEI P+NIK +AG +ATL NW +W V+ T NFL+ WS
Sbjct: 364 VGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWS 423
Query: 449 SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 483
S GTFLIY + A + FV VPETKG++LE+IQ
Sbjct: 424 SYGTFLIYAAINALAIVFVIAIVPETKGKTLEQIQ 458
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/481 (42%), Positives = 303/481 (62%), Gaps = 18/481 (3%)
Query: 8 EEAANLRKPFL-HTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTC 66
+ +L KPFL H + + +S +M V+F V G +FG
Sbjct: 16 NKVEDLGKPFLTHEDDEKESENNESYLM-------------VLFSTFVAVCGSFEFGSCV 62
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG++ +A I
Sbjct: 63 GYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCI 122
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L ++NQL + IG
Sbjct: 123 TGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIG 182
Query: 187 IMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246
+++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG
Sbjct: 183 SSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGK 242
Query: 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306
D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ GING+ FY+
Sbjct: 243 DADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYA 302
Query: 307 SNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366
S F AG +S + T + VQV T + T L+DK+GRR L++IS+ G+ L +
Sbjct: 303 SETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTS 362
Query: 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426
F L+G S + L++ G++ V +FS+G+G +PWVIMSEI P+N+K +AGS+
Sbjct: 363 FLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLV 418
Query: 427 TLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 486
L NW +W V+ T NFL+ WSS GTF +Y A T+ FV+ VPETKG++LEEIQ
Sbjct: 419 VLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGKTLEEIQACI 478
Query: 487 R 487
R
Sbjct: 479 R 479
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/481 (41%), Positives = 301/481 (62%), Gaps = 20/481 (4%)
Query: 4 RDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
+DD E+ + +P L + + + + + S V ++ G +FG
Sbjct: 5 KDDMEKRNDKSEPLL--------------LPENGSDVSEEASWMVYLSTIIAVCGSYEFG 50
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG++ +++V
Sbjct: 51 TCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSV 110
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
+ IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L ++NQL +
Sbjct: 111 ISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFI 170
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE +LQ L
Sbjct: 171 VIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKL 230
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ GINGV+
Sbjct: 231 RGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVI 290
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRLLLLISSSGMAASFFL 362
FY+ IF +AG +S + + + QVV T + T L+D+ GRR LL+ S+ GM L
Sbjct: 291 FYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGMLIGCLL 349
Query: 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLA 422
+ +F L+ I+ L++ G++ + SFS+G+GAIPWVIMSEI P+N+K A
Sbjct: 350 IGNSFLLKA----HGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTA 405
Query: 423 GSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 482
G + T+ NWL SW+V+ T NFL+ WS GTF +YG VC + F++ VPETKGR+LEEI
Sbjct: 406 GGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKGRTLEEI 465
Query: 483 Q 483
Q
Sbjct: 466 Q 466
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/491 (40%), Positives = 303/491 (61%), Gaps = 16/491 (3%)
Query: 4 RDDNEEAANLRK-------PFLHTGSWYKMGSRQSSIMSSSAQMLRDG----SVSVVFCV 52
R + E LRK F + ++ + G + S DG + SV
Sbjct: 3 RQKSMEKGLLRKSLSIRERKFPNEDAFLESGLSRKSPREVKKPQNDDGECRVTASVFLST 62
Query: 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI 112
V G G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +
Sbjct: 63 FVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVL 122
Query: 113 GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR 172
GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++R
Sbjct: 123 GRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVR 182
Query: 173 GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGM 232
GS NQL GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G
Sbjct: 183 GSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGR 242
Query: 233 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292
++ SSLQ LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+
Sbjct: 243 DKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMF 302
Query: 293 LQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
LQQL G +GV +Y+S++F G S+ + T + + V + T L+DK GRR LL+ S
Sbjct: 303 LQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMAS 361
Query: 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE 412
S M S L+SV++ + F + I + +G++ ++SF++G+G +PW+IM+E
Sbjct: 362 CSAMGLSALLLSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
Query: 413 ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVP 472
I P+N+K AG++ T+ NWL WI+T T NF+L+W++ G FLI+ +V A ++ F+ VP
Sbjct: 418 IFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVP 477
Query: 473 ETKGRSLEEIQ 483
ETKGRSLEEIQ
Sbjct: 478 ETKGRSLEEIQ 488
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 189/438 (43%), Positives = 283/438 (64%), Gaps = 5/438 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V+F V G FG GYSS Q II+DL L+++++S+FGS+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
+A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
K G ++ +SLQ LRG D DIS E N IK ++ R +L ++RY ++IG
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
+GL++LQQLSG +G+++Y ++F G SS + + L V+ + + L++K GRR
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLILVEKMGRRP 330
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LLL S+ GM L+S +F + D + I + +G+V + SF++G+G +PW
Sbjct: 331 LLLASTGGMCFFSLLLSFSFCFRSYGMLD----ELTPIFTCIGVVGFISSFAVGMGGLPW 386
Query: 408 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFV 467
+IMSEI P+N+K AG++ TLANW WIV NF+L+W++ GTFLI+ +C + F+
Sbjct: 387 IIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFI 446
Query: 468 SLWVPETKGRSLEEIQFS 485
VPETKGR+LE+IQ S
Sbjct: 447 YAMVPETKGRTLEDIQAS 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 270/439 (61%), Gaps = 5/439 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
++F ++ FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S +
Sbjct: 26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAK 85
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI
Sbjct: 86 AASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEIT 145
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWL
Sbjct: 146 PKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWL 205
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
AK G ++ E LQ LRG DI E EIK SV +S + + I L KRY L IG
Sbjct: 206 AKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIG 265
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
IGL++LQQL G G+ Y S +F AG + + L ++ V + + L+D+ GRR
Sbjct: 266 IGLMLLQQLCGTAGISSYGSTLFKLAGF-PARIGMMVLSLIVVPKSLMGLILVDRWGRRP 324
Query: 348 LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPW 407
LL+ S+ G+ S ++VAF V + I I +G+++ + F++G+GA+PW
Sbjct: 325 LLMTSALGLCLSCITLAVAF----GVKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPW 380
Query: 408 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFV 467
+IMSEI P++IK LAGS+ T+ANW WI NF+L WS GTF+I I+C T+ F
Sbjct: 381 IIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAIICGATIVFT 440
Query: 468 SLWVPETKGRSLEEIQFSF 486
VPET+ +LEEIQ SF
Sbjct: 441 WCLVPETRRLTLEEIQLSF 459
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/450 (42%), Positives = 285/450 (63%), Gaps = 13/450 (2%)
Query: 43 DGSVSVVFCVL----VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGA 98
D + CV+ + G FG + GY+S + I+ DL L+I++FS F SL+ +GA
Sbjct: 26 DSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGA 85
Query: 99 MVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158
+GA+ SG++A +GR+ ++ ++ + IIGW I+F+KD +L GR+ G G+G+ISY
Sbjct: 86 AIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYV 145
Query: 159 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 218
VPVYIAEI+P+++RG+ NQL G+ + Y G F+NWR+LA+LG LPC + + GLF
Sbjct: 146 VPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLF 205
Query: 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278
F+PESPRWLAK+G ++ E+SL LRG + DIS E ++I+ + F +L ++
Sbjct: 206 FVPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQR 265
Query: 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTW 338
+Y + L++GIGL+++QQ SG + VL Y+S I AG S + +T LG+ + +
Sbjct: 266 KYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVI 324
Query: 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG--FVSEDSRFYSILGILSLVGLVTVVI 396
L+DK GRR LLL S SGM + L+ VAF L+ + E + ++ + + +G
Sbjct: 325 LVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIG------ 378
Query: 397 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 456
++++G+G +PWVIMSEI P+NIK AGS+ TL +W S IVT NFLL+WS+ GTF ++
Sbjct: 379 TYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVF 438
Query: 457 GIVCAFTVAFVSLWVPETKGRSLEEIQFSF 486
G V + F+ L VPETKG SLEEIQ S
Sbjct: 439 GAVGGLALLFIWLLVPETKGLSLEEIQASL 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.997 | 1.0 | 0.823 | 0.0 | |
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.995 | 0.997 | 0.823 | 0.0 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.991 | 0.997 | 0.799 | 0.0 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 0.997 | 0.997 | 0.801 | 0.0 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 0.997 | 1.0 | 0.790 | 0.0 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 1.0 | 0.794 | 0.0 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 0.997 | 0.997 | 0.811 | 0.0 | |
| 224097006 | 488 | predicted protein [Populus trichocarpa] | 1.0 | 0.997 | 0.807 | 0.0 | |
| 297842269 | 487 | hypothetical protein ARALYDRAFT_895389 [ | 0.997 | 0.997 | 0.780 | 0.0 | |
| 255561092 | 486 | sugar transporter, putative [Ricinus com | 0.989 | 0.991 | 0.803 | 0.0 |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/487 (82%), Positives = 453/487 (93%), Gaps = 1/487 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKS 420
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSEILPV+IK
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEILPVSIKG 419
Query: 421 LAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 480
LAGS+ATLANWL SW VTMTAN LL WS GGTF IY ++ AFT+ FV+LWVPETKGR+LE
Sbjct: 420 LAGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTLMTAFTIVFVTLWVPETKGRTLE 479
Query: 481 EIQFSFR 487
EIQ SFR
Sbjct: 480 EIQRSFR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/486 (82%), Positives = 452/486 (93%), Gaps = 1/486 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKS 420
LVSVAF+L+ +SEDSRFYSILGILSLVGLV +VI+FSLGVGAIPWVIMSEILPV+IK
Sbjct: 360 LLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEILPVSIKG 419
Query: 421 LAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 480
LAGS+ATLANWL SW VTMTAN LL WS GGTF IY ++ AFT+ FV+LWVPETKGR+LE
Sbjct: 420 LAGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTLMTAFTIVFVTLWVPETKGRTLE 479
Query: 481 EIQFSF 486
EIQ SF
Sbjct: 480 EIQRSF 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/483 (79%), Positives = 445/483 (92%)
Query: 5 DDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGF 64
+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS Q++RDG+VSV+FCVL+VALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124
TCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMIAA+P
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184
NIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQN+RG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 185 IGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
IGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM ++FE+SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
GFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRKRYWFPLM+GIGLLVLQQLSGING+LF
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 305 YSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364
YS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S +VS
Sbjct: 302 YSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLIISSSVMTVSLLIVS 361
Query: 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGS 424
+AF+LEG VSEDS +SILGI+S+VGLV +VI FSLG+G IPW+IMSEILPVNIK LAGS
Sbjct: 362 IAFYLEGVVSEDSHLFSILGIVSIVGLVAMVIGFSLGLGPIPWLIMSEILPVNIKGLAGS 421
Query: 425 VATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQF 484
+AT+ NWL+SW +TMTAN LL+WSSGGTF IY +V AFT+AF+++WVPETKGR+LEEIQF
Sbjct: 422 IATMGNWLISWGITMTANLLLNWSSGGTFTIYTVVAAFTIAFIAMWVPETKGRTLEEIQF 481
Query: 485 SFR 487
SFR
Sbjct: 482 SFR 484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/488 (80%), Positives = 446/488 (91%), Gaps = 2/488 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+A +LRKPFLHTGSWY+MGSRQSS+M SS Q++RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQ I DLKL++SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEAS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+RYW PLMIGIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG+ +SNVAT GLG +QV+ATGV T ++DKAGRRLLL+ISSS MA S
Sbjct: 300 NGVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTSIVDKAGRRLLLIISSSAMAIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
LV+V+FF++ FVS+ S YSILGILS+VG++ +V+ FSLG+G IPW+IMSEILPVNIK
Sbjct: 360 LLLVAVSFFVQDFVSDQSHLYSILGILSIVGVLGMVVGFSLGMGPIPWIIMSEILPVNIK 419
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
LAGSVATLANWL S++VTMTAN LL WSSGGTF IY IVCA T+AFV++WVPETKGR+L
Sbjct: 420 GLAGSVATLANWLFSFVVTMTANLLLSWSSGGTFTIYLIVCALTIAFVAIWVPETKGRTL 479
Query: 480 EEIQFSFR 487
EEIQ SFR
Sbjct: 480 EEIQSSFR 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/487 (79%), Positives = 447/487 (91%), Gaps = 1/487 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ + +L+KPFLHTGSWYKMGSRQSS+M S+ ++RD SVSV+FCVL+ ALGPI
Sbjct: 1 MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRD-SVSVLFCVLIAALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ II+DLKL++SEFS+FGSL+NVGAMVGAIASGQIAEY+GRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQQAIINDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY VPVYIAEIAP+NMRGSLGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPENMRGSLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM E+FE+SL
Sbjct: 180 LSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMMEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RKRYWFPL +GIGLLVLQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRKRYWFPLSVGIGLLVLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS++IFANAGISSSN AT GLG +QV+ATGV TWL+DK+GRR+LL+ISSS M AS
Sbjct: 300 GVLFYSTSIFANAGISSSNAATVGLGAIQVIATGVATWLVDKSGRRVLLIISSSLMTASL 359
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKS 420
+VS+AF+LEG V +DS+++SILGI+S+VGLV +VI FSLG+G IPW+IMSEILPVNIK
Sbjct: 360 LVVSIAFYLEGVVEKDSQYFSILGIISVVGLVVMVIGFSLGLGPIPWLIMSEILPVNIKG 419
Query: 421 LAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 480
LAGS AT+ANWLV+WI+TMTAN LL WSSGGTFLIY +V AFTV F SLWVPETKGR+LE
Sbjct: 420 LAGSTATMANWLVAWIITMTANLLLTWSSGGTFLIYTVVAAFTVVFTSLWVPETKGRTLE 479
Query: 481 EIQFSFR 487
EIQFS R
Sbjct: 480 EIQFSLR 486
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/487 (79%), Positives = 448/487 (91%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS ++RDG+VSV+FCVL+VALGPI
Sbjct: 1 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQ++RG LGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQHLRGGLGSVNQ 180
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGMT++FE+SL
Sbjct: 181 LSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRKRYWFPLM+GIGLLVLQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRKRYWFPLMVGIGLLVLQQLSGIN 300
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S
Sbjct: 301 GVLFYSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLMISSSVMTVSL 360
Query: 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKS 420
+VS+AF+LEG VSEDS +S+LGI+S+VGLV +VI FSLG+G IPW+IMSEILPVNIK
Sbjct: 361 LIVSIAFYLEGVVSEDSHLFSMLGIVSVVGLVVMVIGFSLGLGPIPWLIMSEILPVNIKG 420
Query: 421 LAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLE 480
LAGS+AT+ NWL+SW++TMTAN LL+W+SGGTF IY +V AFT+AF++LWVPETKGR+LE
Sbjct: 421 LAGSIATMGNWLISWVITMTANLLLNWNSGGTFTIYTVVAAFTIAFIALWVPETKGRTLE 480
Query: 481 EIQFSFR 487
EIQFSFR
Sbjct: 481 EIQFSFR 487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/488 (81%), Positives = 452/488 (92%), Gaps = 2/488 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+ ++RKPFLHTGSWY+M SRQSS+M SS Q +RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSS-QAIRDNSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFT GYSSPTQA I++DL LT+SEFS+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFESS
Sbjct: 180 QLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRKRYWFPL +GIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSSNIFA AGI SSNVAT G+G +QV+ATGV TWL+D+ GRRLLL++S+SGM S
Sbjct: 300 NGVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
+V+V+FF++GFV EDS YSILGILS+VG+V +V++FSLG+GAIPWVIMSEILPVNIK
Sbjct: 360 LLIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTFSLGMGAIPWVIMSEILPVNIK 419
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
SLAGSVATLANWL+S++VTMTAN LLDWS+GGTF+IY +V AF V FVS+WVPETKGR+L
Sbjct: 420 SLAGSVATLANWLISFLVTMTANLLLDWSTGGTFIIYSVVSAFAVVFVSMWVPETKGRTL 479
Query: 480 EEIQFSFR 487
EEIQ SFR
Sbjct: 480 EEIQSSFR 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097006|ref|XP_002310808.1| predicted protein [Populus trichocarpa] gi|222853711|gb|EEE91258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/488 (80%), Positives = 445/488 (91%), Gaps = 1/488 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MS RDD EEA + LRKP L TGSWY+M SRQSSIMSSSAQMLRDGSVSVV CVL+VALGP
Sbjct: 1 MSQRDDAEEARDQLRKPLLQTGSWYRMSSRQSSIMSSSAQMLRDGSVSVVLCVLIVALGP 60
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQAEIISDLKL+ISEFS+FGSL+NVGAM+GA+ SGQ+AEYIGRKGSL+
Sbjct: 61 IQFGFTCGYSSPTQAEIISDLKLSISEFSMFGSLSNVGAMIGALVSGQLAEYIGRKGSLV 120
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
+AAVPNIIGWL ISF+ DSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQ+MRGSLGSVN
Sbjct: 121 VAAVPNIIGWLSISFAVDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQDMRGSLGSVN 180
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGI+L+YLLGLFVNWRVLAVLG PC LLI GLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 181 QLSVTIGILLSYLLGLFVNWRVLAVLGCFPCALLILGLFFIPESPRWLAKMGMTEDFEAS 240
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRG+DTDI+ EVNEIKR+VASSS+RT IRFA+LKR+RYWFPLM+GIGLLVLQQ SGI
Sbjct: 241 LQVLRGYDTDITAEVNEIKRAVASSSKRTTIRFADLKRRRYWFPLMVGIGLLVLQQFSGI 300
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NG+ FYSSNIFANAGISSSN+AT GLG +QV+ATG+++WLMDKAGRRLLL+IS++G+ S
Sbjct: 301 NGIFFYSSNIFANAGISSSNLATCGLGAIQVIATGISSWLMDKAGRRLLLIISTTGVTLS 360
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
LV++AF+L+G + +DS Y I+GI+SL GLV VVI FS+G+GAIPW+IMSEILPVNIK
Sbjct: 361 LLLVAIAFYLQGILPQDSDLYHIMGIVSLGGLVAVVIFFSVGLGAIPWIIMSEILPVNIK 420
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
+AGSVATLANWL SW+VTMTAN L+ WSS GTF IY +V AFTV FVSLWVPETKGR+L
Sbjct: 421 GIAGSVATLANWLASWLVTMTANLLMSWSSAGTFTIYTVVSAFTVIFVSLWVPETKGRTL 480
Query: 480 EEIQFSFR 487
EEIQ SFR
Sbjct: 481 EEIQLSFR 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842269|ref|XP_002889016.1| hypothetical protein ARALYDRAFT_895389 [Arabidopsis lyrata subsp. lyrata] gi|297334857|gb|EFH65275.1| hypothetical protein ARALYDRAFT_895389 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/488 (78%), Positives = 441/488 (90%), Gaps = 2/488 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEE N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEGRNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMT+DFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTVLIPGLFFIPESPRWLAKMGMTDDFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPL +GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFEDLKRRRYYFPLTVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
+V+ AF+L+GFVS DS Y+ L ILS+VG+V +V+SFSLG+G IPW+IMSEILPVNIK
Sbjct: 360 LVIVAAAFYLKGFVSPDSDMYNWLSILSVVGVVAMVVSFSLGMGPIPWLIMSEILPVNIK 419
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
LAGS+ATLANW SW++TMTAN LL WSSGGTF +YG+VCAFTV FV+LWVPETKGR+L
Sbjct: 420 GLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGRTL 479
Query: 480 EEIQFSFR 487
EE+Q FR
Sbjct: 480 EELQALFR 487
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561092|ref|XP_002521558.1| sugar transporter, putative [Ricinus communis] gi|223539236|gb|EEF40829.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/484 (80%), Positives = 445/484 (91%), Gaps = 2/484 (0%)
Query: 6 DNEEAAN--LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
EEA + +RKP LHTGSWY+M SRQSS+M SS+Q +RDG+VSVV CVL+VALGPIQFG
Sbjct: 3 SREEAGDDGVRKPLLHTGSWYRMSSRQSSMMGSSSQYIRDGAVSVVLCVLIVALGPIQFG 62
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
FTCGYSSPTQAEII DL L+ISEFS+FGSL+NVGAMVGAIASGQ+AEYIGRKGSLM+AA+
Sbjct: 63 FTCGYSSPTQAEIIRDLNLSISEFSLFGSLSNVGAMVGAIASGQMAEYIGRKGSLMVAAI 122
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISYTVPVYIAEIAPQN RGSLGSVNQLSV
Sbjct: 123 PNIIGWLSISFAKDSSFLFMGRLLEGFGVGIISYTVPVYIAEIAPQNRRGSLGSVNQLSV 182
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
T+GIMLAYLLGLFV+WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SLQVL
Sbjct: 183 TLGIMLAYLLGLFVHWRLLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQVL 242
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RGFDTDIS EVNEIKRSVASS++R+ +RFA+L+R+RYWFPLM+GIGLL+LQQLSGING+L
Sbjct: 243 RGFDTDISAEVNEIKRSVASSTKRSTVRFADLRRRRYWFPLMVGIGLLMLQQLSGINGIL 302
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363
FYSSNIF +AG+SS N+AT GLGV+QV+ATGV TWL+DKAGRRLLL++S+SG+ S LV
Sbjct: 303 FYSSNIFESAGLSSGNLATVGLGVIQVLATGVTTWLVDKAGRRLLLIVSTSGITVSLLLV 362
Query: 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAG 423
+VAF+LEG VS+DS Y I+GILSLVGLV ++I FSLG+GAIPW+IMSEILPVNIK LAG
Sbjct: 363 AVAFYLEGNVSKDSHLYGIMGILSLVGLVAMIIFFSLGLGAIPWIIMSEILPVNIKGLAG 422
Query: 424 SVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 483
SVATLANWL SW+VTMTAN LL WSSGGTF ++ +V AFTV FV+LWVPETKGR+LEEIQ
Sbjct: 423 SVATLANWLTSWLVTMTANLLLSWSSGGTFTMFTLVSAFTVVFVTLWVPETKGRTLEEIQ 482
Query: 484 FSFR 487
SFR
Sbjct: 483 SSFR 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.997 | 0.997 | 0.729 | 1.1e-192 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.997 | 0.995 | 0.736 | 5.9e-192 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.868 | 0.9 | 0.455 | 3.1e-99 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.864 | 0.909 | 0.446 | 1e-98 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.874 | 0.883 | 0.439 | 4.1e-97 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.864 | 0.895 | 0.442 | 1.1e-94 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.854 | 0.838 | 0.418 | 5e-92 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.862 | 0.909 | 0.432 | 1.4e-87 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.868 | 0.884 | 0.411 | 4.3e-86 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.866 | 0.890 | 0.417 | 1.4e-85 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
Identities = 356/488 (72%), Positives = 410/488 (84%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MG +Q++RD S ALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGS-SQVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXX 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRR GM
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 XXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419
+ FVS DS YS L ILS+VG+V +V+ FSLG+G IPW+IMSEILPVNIK
Sbjct: 360 LVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIK 419
Query: 420 SLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479
LAGS+ATLANW SW++TMTAN LL WSSGGTF +YG+VCAFTV FV+LWVPETKG++L
Sbjct: 420 GLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTL 479
Query: 480 EEIQFSFR 487
EE+Q FR
Sbjct: 480 EELQSLFR 487
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1860 (659.8 bits), Expect = 5.9e-192, P = 5.9e-192
Identities = 360/489 (73%), Positives = 411/489 (84%)
Query: 1 MSFRDDN-EEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALG 58
MSFRDDN EE N LR+PFLHTGSWY+MG +Q++RD S ALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLES-SQVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXX 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRR GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 XXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI 418
+ FVS DS Y+IL ++S+VG+V +VIS SLG+G IPW+IMSEILPVNI
Sbjct: 360 SLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNI 419
Query: 419 KSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478
K LAGS+ATL NW VSW+VTMTAN LL WSSGGTF +Y +VC FTV FVSLWVPETKG++
Sbjct: 420 KGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKT 479
Query: 479 LEEIQFSFR 487
LEEIQ FR
Sbjct: 480 LEEIQALFR 488
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 195/428 (45%), Positives = 282/428 (65%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G+NG+ FY+S+IF +AG+SS + + VVQ+ T + LMDK+GRR G
Sbjct: 282 GVNGIAFYASSIFESAGVSSK-IGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417
+ FV + S S L +L G++ SFSLG+G IPWVIMSEI P++
Sbjct: 341 IGCFLVGLSFSLQ-FVKQLSGDASYL---ALTGVLVYTGSFSLGMGGIPWVIMSEIFPID 396
Query: 418 IKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477
IK AGS+ T+ +W+ SWI++ T NFL++W+ GTF ++ VC TV FV+ VPETKGR
Sbjct: 397 IKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGR 456
Query: 478 SLEEIQFS 485
+LEEIQ+S
Sbjct: 457 TLEEIQYS 464
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 190/426 (44%), Positives = 276/426 (64%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG IA+ +GRKG+
Sbjct: 38 GSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGA 97
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIAP+ RG+L +
Sbjct: 98 MRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTT 157
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWLAK+G +FE
Sbjct: 158 LNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFE 217
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
++L+ LRG DIS E EI+ + + R + +L ++RY ++I GL+V QQ
Sbjct: 218 AALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFG 277
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S+IF AG + + V+QVV T +N ++D+AGR+ G+
Sbjct: 278 GINGICFYTSSIFEQAGFPT-RLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLV 336
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417
++ + + +L++VG++ + SFS G+GA+PWV+MSEI P+N
Sbjct: 337 IGCLIAAVSF----YLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPIN 392
Query: 418 IKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477
IK +AG +ATL NW +W V+ T NFL+ WSS GTFLIY + A + FV VPETKG+
Sbjct: 393 IKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGK 452
Query: 478 SLEEIQ 483
+LE+IQ
Sbjct: 453 TLEQIQ 458
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 189/430 (43%), Positives = 275/430 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG+
Sbjct: 54 GSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGA 113
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +A I GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L +
Sbjct: 114 MRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTT 173
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F
Sbjct: 174 LNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFR 233
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ
Sbjct: 234 VALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFV 293
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
GING+ FY+S F AG +S + T + VQV T + T L+DK+GRR G+
Sbjct: 294 GINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIF 353
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417
+G S + L++ G++ V +FS+G+G +PWVIMSEI P+N
Sbjct: 354 LGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPIN 409
Query: 418 IKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477
+K +AGS+ L NW +W V+ T NFL+ WSS GTF +Y A T+ FV+ VPETKG+
Sbjct: 410 VKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGK 469
Query: 478 SLEEIQFSFR 487
+LEEIQ R
Sbjct: 470 TLEEIQACIR 479
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 189/427 (44%), Positives = 273/427 (63%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG+
Sbjct: 45 GSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGA 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++V + IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L +
Sbjct: 105 MRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALAT 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE
Sbjct: 165 LNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ
Sbjct: 225 IALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFV 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRXXXXXXXXGM 356
GINGV+FY+ IF +AG +S + + + QVV T + T L+D+ GRR GM
Sbjct: 285 GINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGM 343
Query: 357 XXXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV 416
+ I+ L++ G++ + SFS+G+GAIPWVIMSEI P+
Sbjct: 344 LIGCLLIGNSF----LLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPI 399
Query: 417 NIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476
N+K AG + T+ NWL SW+V+ T NFL+ WS GTF +YG VC + F++ VPETKG
Sbjct: 400 NLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKG 459
Query: 477 RSLEEIQ 483
R+LEEIQ
Sbjct: 460 RTLEEIQ 466
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 176/421 (41%), Positives = 270/421 (64%)
Query: 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122
G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +GRK +++
Sbjct: 73 GCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCE 132
Query: 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182
I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++RGS NQL
Sbjct: 133 FFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLM 192
Query: 183 VTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 242
GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G ++ SSLQ
Sbjct: 193 QNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQR 252
Query: 243 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302
LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+ LQQL G +GV
Sbjct: 253 LRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGV 312
Query: 303 LFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXXX 362
+Y+S++F G S+ + T + + V + T L+DK GRR M
Sbjct: 313 TYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMASCSAMGLSALL 371
Query: 363 XXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLA 422
+ F + I + +G++ ++SF++G+G +PW+IM+EI P+N+K A
Sbjct: 372 LSVSYGFQSF----GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAEIFPMNVKVSA 427
Query: 423 GSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 482
G++ T+ NWL WI+T T NF+L+W++ G FLI+ +V A ++ F+ VPETKGRSLEEI
Sbjct: 428 GTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVPETKGRSLEEI 487
Query: 483 Q 483
Q
Sbjct: 488 Q 488
|
|
| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 184/425 (43%), Positives = 254/425 (59%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S + A G K +L +A
Sbjct: 40 FGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFGHKMTLWVA 99
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI P+++RG+ NQL
Sbjct: 100 DLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQL 159
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWLAK G ++ E LQ
Sbjct: 160 LQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGRDKECEEVLQ 219
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DI E EIK SV +S + + I L KRY L IGIGL++LQQL G G
Sbjct: 220 KLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLLQQLCGTAG 279
Query: 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMXXXXX 361
+ Y S +F AG + + L ++ V + + L+D+ GRR G+
Sbjct: 280 ISSYGSTLFKLAGFPA-RIGMMVLSLIVVPKSLMGLILVDRWGRRPLLMTSALGLCLSCI 338
Query: 362 XXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL 421
V + I I +G+++ + F++G+GA+PW+IMSEI P++IK L
Sbjct: 339 TLAVAFG----VKDVPGIGKITPIFCFIGILSFTMMFAIGMGALPWIIMSEIFPMDIKVL 394
Query: 422 AGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 481
AGS+ T+ANW WI NF+L WS GTF+I I+C T+ F VPET+ +LEE
Sbjct: 395 AGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAIICGATIVFTWCLVPETRRLTLEE 454
Query: 482 IQFSF 486
IQ SF
Sbjct: 455 IQLSF 459
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 176/428 (41%), Positives = 264/428 (61%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG + GY+S + I+ DL L+I++FS F SL+ +GA +GA+ SG++A +GR+ +
Sbjct: 45 GSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKT 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ + IIGW I+F+KD +L GR+ G G+G+ISY VPVYIAEI+P+++RG+
Sbjct: 105 MWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTF 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 165 TNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG + DIS E ++I+ + F +L +++Y + L++GIGL+++QQ S
Sbjct: 225 NSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFS 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G + VL Y+S I AG S + +T LG+ + + L+DK GRR GM
Sbjct: 285 GSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMC 343
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417
+ + + + + + + ++++G+G +PWVIMSEI P+N
Sbjct: 344 ITSMLIGVAFTLQKM----QLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMN 399
Query: 418 IKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477
IK AGS+ TL +W S IVT NFLL+WS+ GTF ++G V + F+ L VPETKG
Sbjct: 400 IKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVPETKGL 459
Query: 478 SLEEIQFS 485
SLEEIQ S
Sbjct: 460 SLEEIQAS 467
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 179/429 (41%), Positives = 260/429 (60%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GY+S + ++ DL L+I++FS FGS A +GA +GA+ G +A IGR+G+
Sbjct: 41 GSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGT 100
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ I GWL I+F+K+ L GR++ G G G+ SY VPVYIAEI P+++RG+
Sbjct: 101 MWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTF 160
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+ WR LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 161 SNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 220
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG D DIS E +EI+ + F++L +++Y + L++GIGL+++QQ S
Sbjct: 221 NSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFS 280
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGMX 357
G V+ Y+S IF AG S + + T LG+ + + L+DK GRR GM
Sbjct: 281 GSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMS 339
Query: 358 XXXXXXXXXXXXEGFVSEDSRFYSILG-ILSLVGLVTVVISFSLGVGAIPWVIMSEILPV 416
F + + S L ILS + ++ + ++++G+G +PWVIMSEI P+
Sbjct: 340 MTCMLLGVA-----FTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSEIFPI 394
Query: 417 NIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476
NIK AGS+ TL ++ S IVT NFL +WS+ GTF I+ + + F+ L VPETKG
Sbjct: 395 NIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVPETKG 454
Query: 477 RSLEEIQFS 485
SLEEIQ S
Sbjct: 455 LSLEEIQVS 463
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MKK4 | TRE12_DROME | No assigned EC number | 0.3616 | 0.8788 | 0.8770 | yes | no |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.7832 | 0.9979 | 0.9959 | no | no |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3386 | 0.9383 | 0.9580 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3230 | 0.8870 | 0.9452 | yes | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3399 | 0.9383 | 0.9560 | yes | no |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.7807 | 0.9979 | 0.9979 | yes | no |
| P58354 | GTR8_BOVIN | No assigned EC number | 0.3474 | 0.8665 | 0.8828 | yes | no |
| Q9NY64 | GTR8_HUMAN | No assigned EC number | 0.3584 | 0.8583 | 0.8763 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-98 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-80 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-58 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-24 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 8e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-09 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 4e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 6e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 6e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 6e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.002 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 5e-98
Identities = 164/454 (36%), Positives = 252/454 (55%), Gaps = 29/454 (6%)
Query: 51 CVLVVALGPIQFGFTCGYSSPTQAEI-----------ISDLKLTISEFSIFGSLANVGAM 99
LV ALG FG+ G I I + + S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISY 157
+G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLPC 210
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 271 RFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQ 329
+ EL R + L++G+ L + QQL+GIN + +YS IF G+S S + T +GVV
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299
Query: 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 389
V T + +L+D+ GRR LLL+ ++GMA F ++ VA GI+++V
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV-------AKSKGAGIVAIV 352
Query: 390 GLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS 449
++ + F+LG G +PWVI+SE+ P+ ++ A ++AT ANWL ++++ +
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 450 GGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 483
G FL++ + + FV +VPETKGR+LEEI
Sbjct: 413 GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 1e-80
Identities = 153/468 (32%), Positives = 247/468 (52%), Gaps = 31/468 (6%)
Query: 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGS 92
L V L+ A+G + FG+ G A + K T S + + S
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVS 78
Query: 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEG 149
+ VG +GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVL 202
GVG+ S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262
L ++P LL GLFF+PESPRWL G E+ SL LRG + ++E++
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 263 SSSRRTAIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS 317
S L +G+ L QQ +GIN +++YS IF NAG+S+
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318
Query: 318 SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375
+ + + +G V T V +L+D+ GRR LLLI ++GMA F++ + S
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA-----SF 373
Query: 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSW 435
+ G +++V ++ + F++G G +PWVI+SEI P++++ S+A ANWL ++
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF 433
Query: 436 IVTMTANFLLDWS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 482
IV +L+ GG F+ +G + + FV ++PETKGR+LEEI
Sbjct: 434 IVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 8e-58
Identities = 138/477 (28%), Positives = 223/477 (46%), Gaps = 58/477 (12%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQ--------AEIISDLKLTISEFSIFGSLANVGAM 99
+ LV LG + FG+ S T A S + A +G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RLL 147
+G G + GR+ SL IAAV I + S D++ R++
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197
G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 198 --NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQALQ 248
Query: 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 249 EIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303
Query: 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373
S+ + T +GV+ + T + +DK GR+ L +I + GMA F + AF
Sbjct: 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF------ 357
Query: 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVAT--LA 429
+ GI++L+ ++ V +F++ G + WV++SEI P I K+LA +VA +A
Sbjct: 358 -----YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIA 412
Query: 430 NWLVSW---IVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 483
N+ VSW ++ + + + +G ++ IYG + F+ +VPETKG++LEE++
Sbjct: 413 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 33/400 (8%)
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+ S VG ++G+ G +++ GRK L+++ + + ++ +FS + + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGV 207
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+ +WR L +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVS 250
Query: 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSR 266
LP L +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 251 LPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSS 310
Query: 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-----SNIFANAGISSSNVA 321
+ F +L R + L L L +Y N+ N + ++
Sbjct: 311 KKQYSFLDLFRTPN-----LRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLF 362
Query: 322 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381
GL V++ A + L+D+ GRR MAAS L VA L FV D F
Sbjct: 363 ISGL--VELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFVPVDLYFLR 413
Query: 382 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441
L+++G + +F + ++ +E+ P +++L V + + S I++
Sbjct: 414 T--ALAVLGKFGITSAFQ-----MVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFL 465
Query: 442 NFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 481
+L + +++G A ++L++PETKG L E
Sbjct: 466 VYLGEKWLFLPLVLFG-GLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 8e-15
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
F G+ P+ AE DL + S + G + +G MVGA G +A+ +GRK L+I
Sbjct: 184 FVVGFVLPS-AE--KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS--------- 174
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 175 -LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 226
+G + ++ I+ Y F +WRV ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKMG 231
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY 111
+L++ LG G G SP + DL L+ S+ + S ++G +G++ +G +++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 171
GR+ L++ + +G L+++F+ L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221
RG + +G +L LLG + WR L ++ + LL L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 37/389 (9%)
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
G+++P I ++ L + S +G GA+ G +A+ IGR+ L+ + +
Sbjct: 37 GFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
+ L+ + + + + L + R L G G+G + + ++E AP+ RG+ + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 IMLAYLLGLFV----NWRVL-AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
+ L ++ WR L V G+ P LL+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-------PET 206
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSG 298
V R + E + ++ + F L + + + + + LL L G
Sbjct: 207 VRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVG 265
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG--VNTWLMDKAGRRLLLLISSSGM 356
+ + + + G S S AT G G + WL D+ G R+ L+ +
Sbjct: 266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL---L 322
Query: 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV 416
+ F V V L + + I F G + + +M+ P
Sbjct: 323 LGAVFAVLVGSTL----FSPTLLLLLGAIAGF---------FVNGGQSGLYALMALFYPT 369
Query: 417 NIKSLAGSVATLANWLVSWIVTMTANFLL 445
I++ A L + I + A +LL
Sbjct: 370 AIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 68/388 (17%)
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDSSF----LFMGRLLEGFG 151
+GAI G + IGRK +L+I + IG L+I S++ + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCT 211
+G +Y+AE AP RG GS Q+ +G++LA L L +++ +L +L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY-LLGDDALLEWG 168
Query: 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271
IP L S++ VL G ++E + ++
Sbjct: 169 WRIPFLV-------------------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGP 209
Query: 272 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA------NAGISSSNV--ATF 323
AE K + P ++G+GL++ FY + G+S+++
Sbjct: 210 IAETLTK-HRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTLGLSANSALLVLM 262
Query: 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSIL 383
++ + ++ L D+ GRR +L+I + A + +A G S
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG---------SFT 313
Query: 384 GILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK----SLAGSVATL-----ANWLVS 434
LV + ++ G + E+ P ++ SLA ++A A ++ +
Sbjct: 314 LFFFLVLGMALIGGMYTGPMGS---FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA 370
Query: 435 WIVTMTANFLLDWSSGGTFLIYGIVCAF 462
+V MT DW + G +L +
Sbjct: 371 ALVAMTG----DWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 62 FGFTCGYSS----PTQAEIISDLKLTISEFSIFGSLANVGAM---VGAIASGQIAEYIGR 114
FGF + P E S L LT F++FG G + +GAI G + +GR
Sbjct: 34 FGFYATAIAKTFFPAGNEFAS-LMLT---FAVFG----AGFLMRPLGAIVLGAYIDRVGR 85
Query: 115 K------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162
+ G+L+IA VP G+ I + L GRLL+GF GV V VY
Sbjct: 86 RKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVY 141
Query: 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------------WRVLAVLGVLPC 210
+AEIA +G S S + ++ A LLG +N WR+ ++G C
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---C 198
Query: 211 TLLIPGLFFI 220
L++P +F I
Sbjct: 199 -LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 61/364 (16%), Positives = 126/364 (34%), Gaps = 49/364 (13%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
+ DL ++ +E + + ++G + +G++++ GR+ L+I + +G L++ F+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195
L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 196 FV----NWR-VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 250
+ WR +L +L + +P P
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPP------------------------- 177
Query: 251 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310
E KR + + A R ++ LL + L +
Sbjct: 178 -----ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 311 ANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370
+ + + + G++ + + L D+ GRR LL++ + + +++ E
Sbjct: 233 GLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291
Query: 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLAN 430
+ LV L+ + L A+ ++S++ P + A + A
Sbjct: 292 SSL------------WLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAG 338
Query: 431 WLVS 434
L
Sbjct: 339 SLGG 342
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138
+ L +++ S +G + GA+ G++A+ IGRK L+++ + G ++ ++
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAW 101
Query: 139 SF--LFMGRLLEGFGVGVISYTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F L + RLL G G+G +P IA E +RG+ S+ V G LA ++
Sbjct: 102 DFPSLLVARLLTGVGLGG---ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GLF----VNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 245
G+ WR + +G + LL+P L ++PES + G + L+ L G
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 18/196 (9%)
Query: 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGL---GVVQVVATGVN 336
+ L++ + L G G+L Y S+ A L G+ ++ +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 337 TWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVI 396
L D+ GRR LLL+ +AA L+ S+ +L + L+ +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGL 279
Query: 397 SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 456
F+ SE+ P + A + L + + A LLD G +
Sbjct: 280 GFAFPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 457 GIVCAFTVAFVSLWVP 472
A A + L +P
Sbjct: 337 LAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 22/288 (7%)
Query: 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133
AE+ + LT + + S A + GA+ G + GR+ ++ + V G L
Sbjct: 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95
Query: 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F+ +F+ RL+ G G+G + Y+ E P+++R + +G ++A +
Sbjct: 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155
Query: 194 GLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 247
V WR L + +LP + IPE ED++
Sbjct: 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE----------AEDWKEKHAGKALVR 205
Query: 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS-GINGVLFYS 306
T + I + + +A+ A + KR+ + + + +L S I +
Sbjct: 206 TMVDI-LYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDL--LP 262
Query: 307 SNIFANAGISSSNVA--TFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
+ + A+ G+S VA + +V V +L D GRR + S
Sbjct: 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS 310
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155
+G ++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 156 SYTVPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPC 210
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 211 TLLIPGLFFIPES 223
I F +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
E+ + LT + + S A + G + G + + GR+ +++I+ V +G L F
Sbjct: 45 EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ LF+ RL+ G G+ + Y+ E P+++R +IG ++A +
Sbjct: 105 APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164
Query: 195 LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
V WR L +G+LP + +PE+ W K + + +L
Sbjct: 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWLIISFSKDS 138
L L+ +E + SL +G ++GA+ G +++ +GR+ L++ + +G L+++ +
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LF 196
+ L + LL GFG+G + +E+AP RG+ + ++G L LL L
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325
Query: 197 VNWRVLAVLGVLPCTLLIPGLFF 219
V +L L+ L
Sbjct: 326 DTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
I +DL ++ + +G +GA + + R+ L+ I+ L+ +
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVN---QLSVTIGIMLA 190
+ + L + R L G GV A + P RG L V L+ +G+ L
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 YLLGLFVNWR----VLAVLGVLPCTLLI 214
LG WR +AVL +L LL
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
I +DL LT E + + A +G G G +A+ GRK +M + V +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLG 194
L + R + G G+ Y E P++++ + IG I+ AY +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 195 LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRW 226
F WR +G+LP L+I PES W
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 81/412 (19%), Positives = 151/412 (36%), Gaps = 42/412 (10%)
Query: 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129
S + DL L+ +++ S + G +VG G + + G + +L + V +
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73
Query: 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV----NQLSVTI 185
+ +F+ L++ R+L G + + +A P + R + S+ L I
Sbjct: 74 GLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII 133
Query: 186 GIMLAYLLGLFVNWRVLAVL-GVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
G L + + +W+ ++ GVL + L FIP+ P+ K + E + V
Sbjct: 134 GGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---KAKWLTEEEKYIVVGG 190
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
+ K+ I+ LK +R W + +G ++ G +
Sbjct: 191 LLAEQQGKGPSTPKKY--------QIKEL-LKDRRVWG---LALGQFLVNIGLGFFLT-W 237
Query: 305 YSSNIFANAGISSSNVATFGL--GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362
+ + + G+S G+V + + L D RR L+ + A L
Sbjct: 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL 297
Query: 363 V-SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL 421
V S+ F +V+ Y+ L +++L F LG GAI W ++S+ P NI L
Sbjct: 298 VLSLLMFATNYVNIP---YAALALVALGF-------FGLGAGAIGWALISDNAPGNIAGL 347
Query: 422 AGSVATLANWL--------VSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVA 465
G + L + I T +F + G + +
Sbjct: 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.75 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.74 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.72 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.72 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.59 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.55 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.52 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.52 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.47 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.47 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.46 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.45 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.42 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.41 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.4 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.37 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.36 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.33 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.32 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.32 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.3 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.29 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.27 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.27 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.27 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.26 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.26 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.25 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.25 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.24 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.23 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.22 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.22 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.22 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.22 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.2 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.2 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.19 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.19 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.17 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.17 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.17 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.16 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.16 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.15 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.15 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.13 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.11 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.11 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.1 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.1 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.09 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.09 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.08 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.07 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.06 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.06 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.06 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.03 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.0 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.98 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.96 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.96 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.95 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.84 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.84 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.82 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.79 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.77 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.74 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.67 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.53 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.51 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.51 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.5 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.48 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.48 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.46 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.44 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.38 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.34 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.34 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.33 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.29 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.28 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.27 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.24 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.22 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.12 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.1 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.1 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.07 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.97 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.94 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.72 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.7 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.52 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.39 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.39 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.38 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.26 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.01 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.66 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.58 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.55 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.27 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.94 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.79 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.63 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.3 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.18 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.76 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.71 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.52 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.89 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.83 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.25 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 91.09 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.85 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 88.62 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 84.62 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.32 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 81.66 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 81.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 80.26 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=334.51 Aligned_cols=437 Identities=34% Similarity=0.586 Sum_probs=368.2
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHH--------hhcC--CChhh----HHHHHHHHHHHHHHHHHHHHHHH
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEII--------SDLK--LTISE----FSIFGSLANVGAMVGAIASGQIA 109 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~g~~~s~~~~~~~~~~~~~g~l~ 109 (487)
..++.....+..+++.+-.||+.+.+++..+.+. +.+| .++++ .+.+.+++.+|.++|++..|.++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777999999998888655433 3445 34333 57889999999999999999999
Q ss_pred hhhchhHHHHhhhhhHHHHHHHHHHh---cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHH
Q 011388 110 EYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (487)
Q Consensus 110 d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 186 (487)
||+|||..+.++.++..++.++..++ ++++.++++|++.|+..|........++.|..|++.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999998888887777664 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh------hhHHHHHhhhHHHHHHHhhhhccCCChHHHHh-cCChHHHHHHHHHHhCCChhhhHHHHHHHH
Q 011388 187 IMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (487)
Q Consensus 187 ~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (487)
.+++..++.-- .|++.+.+..+++++.++...++||||+|+.. ++++++|++.++++++..++.....+..++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 99997666332 69999999999999999999999999999987 899999999999999987544443333333
Q ss_pred Hhhh-ccchhhhhHHHHhhccc-chhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhH
Q 011388 260 SVAS-SSRRTAIRFAELKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGV 335 (487)
Q Consensus 260 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 335 (487)
.+++ .++++..+++++++++. ++...+.+.+....++.+.+.+.+|...++++.|++... +.....++..++.+++
T Consensus 245 ~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 245 IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23336678889998854 556677778888889999999999999999999998775 7778888999999999
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC
Q 011388 336 NTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP 415 (487)
Q Consensus 336 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 415 (487)
+.++.||.|||++++.+..++.+..+++..........+ .+..+..+.+.+.+...++.|..|+.+-+.+|++|
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~ 398 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP 398 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence 999999999999999999999888888887766554311 23445567788888999999999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhh
Q 011388 416 VNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 486 (487)
Q Consensus 416 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
++.|+.+.++....+.+..++....+..+.+.-+...+.++.+.+.+..+..++++||||+|+..|+.+++
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 99999999999999999999999999999994444889999999999999999999999999998887654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=354.49 Aligned_cols=417 Identities=22% Similarity=0.231 Sum_probs=321.4
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~ 123 (487)
..+..|.++++++++.+..+++...+++++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34667788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------
Q 011388 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------ 197 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------ 197 (487)
++++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++..+++.+|.++++.++..+
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765322
Q ss_pred -----------hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhh----hHH--HHHHHHH
Q 011388 198 -----------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI----SIE--VNEIKRS 260 (487)
Q Consensus 198 -----------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 260 (487)
+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++.+.+... ... .+..+..
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 69999999988888888888889999999999999999999999998765321 100 0011000
Q ss_pred hhh------c-cch----------------hhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc----
Q 011388 261 VAS------S-SRR----------------TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA---- 313 (487)
Q Consensus 261 ~~~------~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 313 (487)
... + ... ...+++++++++.++ ..+...+.+++....++.+..|.|.+++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~-~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVRE-ITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 001355566655444 444555556666667888999999875431
Q ss_pred --------------------------------------CC--------------------C-------------------
Q 011388 314 --------------------------------------GI--------------------S------------------- 316 (487)
Q Consensus 314 --------------------------------------g~--------------------~------------------- 316 (487)
|+ +
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence 00 0
Q ss_pred ------------------------------c------hhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 011388 317 ------------------------------S------SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (487)
Q Consensus 317 ------------------------------~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (487)
. ......+.+++.+++.+++++++||+|||+++..+.++.+++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ 639 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC 639 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 0022445568889999999999999999999988888888777
Q ss_pred HHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 011388 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
+++++.. .....++..+++. ++..+..+...++++|.+|++.|++++|+.+....+|++++|++
T Consensus 640 ll~~~~~---------------s~~~ll~~~~l~g-~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i 703 (742)
T TIGR01299 640 FFLSFGN---------------SESAMIALLCLFG-GLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILI 703 (742)
T ss_pred HHHHHHc---------------cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665431 0111222222222 22333445667899999999999999999999999999999999
Q ss_pred hhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 011388 441 ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478 (487)
Q Consensus 441 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
++.+.+.+...++.+.+++.++++++ ..++||++++.
T Consensus 704 ~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~~~ 740 (742)
T TIGR01299 704 FGSFVGITKAAPILFASAALACGGLL-ALKLPDTRGQV 740 (742)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcccc
Confidence 99988865556666666666665554 44569988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=341.51 Aligned_cols=426 Identities=19% Similarity=0.224 Sum_probs=313.1
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhc-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-----KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~ 118 (487)
..+..+.+++++.++.+.++++...++.+.|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~ 89 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY 89 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3456777888888899999999999999999887753 35566789999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhcC------hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHH
Q 011388 119 MIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (487)
.++.+++.+++++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 7899999999999999999999999999999999999999999999999988887
Q ss_pred hhhh---------------------------hhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChH-HHHHHHHHHh
Q 011388 193 LGLF---------------------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE-DFESSLQVLR 244 (487)
Q Consensus 193 l~~~---------------------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~~~ 244 (487)
++.. .+||++|.+.++++++..+..+++||||+|+..+++++ ++.+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence 6532 16999999998888888888889999999998877764 4666666554
Q ss_pred CCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcc---cchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--
Q 011388 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR---YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-- 319 (487)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 319 (487)
..+.+.+. ++.++..+ +++..+.+++++++++ ..++..+.....++.....++....|.|.++++.|++...
T Consensus 250 ~~~~~~~~--~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~ 326 (502)
T TIGR00887 250 QVKIEAEP--DEVEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAAT 326 (502)
T ss_pred ccccccCc--ccccchhc-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccc
Confidence 42211110 01000000 1111123566776532 2222233333333333333455667788888887775431
Q ss_pred ------------HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHH
Q 011388 320 ------------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 387 (487)
Q Consensus 320 ------------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
.......++.+++.++.++++||+|||+.+..+..++.++..++.+...... .. ..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~----------~~--~~ 394 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS----------TH--GF 394 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc----------hh--HH
Confidence 0223334566778899999999999999988887777766666654321100 00 11
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhh-----------cchhhHHH
Q 011388 388 LVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS-----------SGGTFLIY 456 (487)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~-----------~~~~~~~~ 456 (487)
..........+..+..+..+.+..|.+|++.|+++.|+.+..+.++++++|.+.+.+.+.+ ....+.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHH
Confidence 1112222233445566777788999999999999999999999999999999999998731 23456777
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHhh
Q 011388 457 GIVCAFTVAFVSLWVPETKGRSLEEIQFS 485 (487)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
++++++..++ .+++||++++++||++++
T Consensus 475 ~~~~~~~~i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 475 ALFMFLGILF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHHHHHHH-heEeccCCCCCHHhhhCC
Confidence 7777766554 467799999999998764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=333.48 Aligned_cols=425 Identities=31% Similarity=0.516 Sum_probs=318.3
Q ss_pred chhHHHHHHHhhhcccccccccccchhHHHHHhhc--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 011388 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL--------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117 (487)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~ 117 (487)
+....+++++.++.+.++++...+++..|.+++++ +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566667777888999999999999999999987 8889999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHh---------cC---hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH
Q 011388 118 LMIAAVPNIIGWLIISFS---------KD---SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~---------~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 185 (487)
+.++.++++++.+.++++ ++ ++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999999988874 22 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh------------hhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHH
Q 011388 186 GIMLAYLLGLF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (487)
Q Consensus 186 g~~~~~~l~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (487)
|.++++.++.. .+||+.|++.++..++..+..+++||+|+|+..+++.+++.+..++..+..... ..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT-QA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH-HH
Confidence 99988776532 289999999888777777677789999999888888887777666665433211 11
Q ss_pred HHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHH
Q 011388 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 331 (487)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 331 (487)
.++..+...++. ...+..+. ..............+......+...++.|.+.++.|.+... ......++..++
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 111111100000 00011111 01111122222333334444556677888888888876543 455566788899
Q ss_pred HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhc
Q 011388 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 411 (487)
Q Consensus 332 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (487)
+.++.++++||+|||+.+..+.++.+++.+++........ ........+.++..++.....|..+.++.
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 9999999999999999999998888887777664322111 11122333444455555555677789999
Q ss_pred ccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh------h-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHh
Q 011388 412 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLL------D-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQF 484 (487)
Q Consensus 412 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
|.+|++.|+++.|+.+...++++++++.+.+.+. + .+....+.++++++++..++.+++.||+|+++.+|+++
T Consensus 391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 9999999999999999999999999988877655 3 44556677777777777777777889999999999887
Q ss_pred hhC
Q 011388 485 SFR 487 (487)
Q Consensus 485 ~~~ 487 (487)
+++
T Consensus 471 ~~~ 473 (479)
T PRK10077 471 LWE 473 (479)
T ss_pred HHh
Confidence 653
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=328.20 Aligned_cols=440 Identities=37% Similarity=0.625 Sum_probs=364.2
Q ss_pred CcchhHHHHHHHhhhccccccc--ccccchhHHHHHhhc-----CCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011388 44 GSVSVVFCVLVVALGPIQFGFT--CGYSSPTQAEIISDL-----KLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~-----~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~d~~Gr 114 (487)
.............++.+..+++ .+..++..+.+.++. ..+. .+.+|+.+...++..+++++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666667777777776 677778888777743 2222 355999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh
Q 011388 115 KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
|+.++++.+++.++.+++++++|+++++++|+++|+|.|+.......+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhh-----hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCC-hhhhHHHHHHHHH-h-hhccc
Q 011388 195 LFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRS-V-ASSSR 266 (487)
Q Consensus 195 ~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~ 266 (487)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++.+ .+...+.+..+.. . +....
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 776 69999999999998887778889999999999999999999999999943 3333333333311 1 11111
Q ss_pred hhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCch-hHHHHHHHHHHHHHHhHHHHHhhhccc
Q 011388 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGR 345 (487)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (487)
..+..+++++++...++..+...+..+.++.+.+...+|.+.+++..|.+.. .......++..+++..++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222466677766777788899999999999999999999999999988766 566777788888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH
Q 011388 346 RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 425 (487)
|+.+..+...+.++.++++........... ......+..+...+++...++.+..|+.+.+.+|.+|.+.|+.+.++
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHH
Confidence 999999999999999988887665433110 12234567777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhc-chhhHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHhhh
Q 011388 426 ATLANWLVSWIVTMTANFLLDWSS-GGTFLIYGIVCAFTVA-FVSLWVPETKGRSLEEIQFSF 486 (487)
Q Consensus 426 ~~~~~~~g~~i~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 486 (487)
....+.+.+.+-........+... ...+..+++++.+... ++++++||+|+++.+|+++.+
T Consensus 436 ~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 436 AVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 999999998888777766666443 6678888888877777 788899999999999998865
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=324.08 Aligned_cols=434 Identities=35% Similarity=0.604 Sum_probs=324.1
Q ss_pred CCcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCC--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011388 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (487)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Gr 114 (487)
+..+..+...+++.++.+..+++...+.+.+|.+..+++.+ ..+.+++.+++.++..++++++|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 34466666777777788888999999999999999988877 8999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHhc---ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHH
Q 011388 115 KGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (487)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (487)
|+++.++.+++.++.+++.+.. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999996654 4458999999999999999999999999999999999999999999999999999
Q ss_pred Hhh---hh----hhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHH---HHHHHh
Q 011388 192 LLG---LF----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN---EIKRSV 261 (487)
Q Consensus 192 ~l~---~~----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 261 (487)
.++ .. .+||+.|++.++..++.++..+++||+|++...+++.++..+...+..+.+.......+ ......
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 998 33 28999999977777777777788999999887777766665555554433221111111 000000
Q ss_pred hhccchhhhhHHHHhhcc--cchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHH
Q 011388 262 ASSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNT 337 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (487)
+.+.+..+..++++++.. ..+..++...+..+...........+.|.+.++.|++... .......++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 000111111233333321 2344455555555555555666778889888888887644 556666788899999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh
Q 011388 338 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417 (487)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 417 (487)
++.||++||+.+..+..+..++.+.+.+....... +.+ .......+....++..+++.+..+....+..|.+|++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT-GSS----KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC-Ccc----cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 99999999999888877777766666533221111 000 0012233334445555666666677778889999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011388 418 IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 481 (487)
Q Consensus 418 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
.|+++.|+.+...++|++++|.+.+.+.+ .++...+++.++++++.+++..++.+|+++++.+|
T Consensus 416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 99999999999999999999999999988 56667788888888888777777788888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=319.88 Aligned_cols=390 Identities=23% Similarity=0.313 Sum_probs=294.3
Q ss_pred hhHHHHHhhcCCC---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHH
Q 011388 71 PTQAEIISDLKLT---ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (487)
Q Consensus 71 ~~~~~i~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (487)
+..|.+.+|+|++ +.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-hhHHHHHhhhHHHHHHHhhhhccCCChHH
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (487)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998776 89999999888888777777889999999
Q ss_pred HHhcCChHHHHHHHHHHhCCChhhhH-HHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhh
Q 011388 227 LAKMGMTEDFESSLQVLRGFDTDISI-EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFY 305 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (487)
+..+++.+++.+.+++..+.+..... +........+.+++.++...+++++++..+...+.....++.....++....+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988888777654432111 11111101111111123467888888777666665555444333222222222
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHH
Q 011388 306 SSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGI 385 (487)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (487)
. .+.+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++.+++.+.. . . ..+
T Consensus 350 ~----~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~----~------~~~ 411 (505)
T TIGR00898 350 L----GNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---V----D------LYF 411 (505)
T ss_pred c----cccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---C----C------chH
Confidence 2 223332 22445566788889999999999999999999888877777766555421 0 0 001
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHHHHHHHHH
Q 011388 386 LSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVA 465 (487)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
.......+ ..+...+..+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.+....+.+++++.+++.+
T Consensus 412 ~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 412 LRTALAVL-GKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 11122222 222222233455688999999999999999999999999999999999 6566666677777777766655
Q ss_pred HHHHhcccCCCCCHHH
Q 011388 466 FVSLWVPETKGRSLEE 481 (487)
Q Consensus 466 ~~~~~~~~~~~~~~~~ 481 (487)
+ .+++||+++++++|
T Consensus 490 ~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 490 L-TLFLPETKGVPLPE 504 (505)
T ss_pred H-HHcCcCCCCCCCCC
Confidence 4 45678998877654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=286.80 Aligned_cols=400 Identities=17% Similarity=0.179 Sum_probs=296.3
Q ss_pred hcCCcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh
Q 011388 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120 (487)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~ 120 (487)
.+..++.++-+.+.+.+++...++.+...+...|.+.+|.++|.+|+|++.|++.++|.++..+.|.++||.++|+.+..
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 34445566777788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh--hhh-
Q 011388 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LFV- 197 (487)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~~- 197 (487)
++++.++.+++++++++.+.+.++.+++|..+|..+|.+...+..|++++|||+..++++.+.++|..+.|++. +.+
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887 555
Q ss_pred ---hhHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhc-cchhhhhH
Q 011388 198 ---NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS-SRRTAIRF 272 (487)
Q Consensus 198 ---~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (487)
+||..|++.++++++. ++.++..+|+|+..-... .||. +++ +.+..+++.+.+ -...+.-.
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~~-------~~d------~~e~~~~~~~~~~ls~~~i~~ 245 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEEY-------RGD------PLEIYEEEKENEGLTAWQIFV 245 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHHh-------hcC------chhhhhhhccCCCccHHHHHH
Confidence 8999999988877766 556667889885211110 0000 000 000000011111 11122234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhc--cchH
Q 011388 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRL 347 (487)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~ 347 (487)
+-+++||. ++.+++........-+.+..|.|.++.+. +++... .....+-.++++|.+++|+++||+ |||.
T Consensus 246 ~YVL~Nk~----iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~ 321 (448)
T COG2271 246 KYVLKNKL----IWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG 321 (448)
T ss_pred HHHHcChH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence 44556665 45555555555556778899999998764 676554 777888899999999999999996 5665
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 348 LLLISSSG-MAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 348 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
...+.+.+ ..++.+.+... +++ .......++...+++..+...+.-....|..|++..|++.|+.
T Consensus 322 p~~~i~~~~i~~~~~~~w~~-------~~~-------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~ 387 (448)
T COG2271 322 PMALIFMLLITASLVLYWLA-------PNG-------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV 387 (448)
T ss_pred hHHHHHHHHHHHHHHHHHcC-------CCc-------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence 54433322 22222222211 101 1223333333334444444444457789999999999999999
Q ss_pred HHHHHH-HHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 427 TLANWL-VSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 427 ~~~~~~-g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
..+.++ |.+.+....|++.| .++...|.++.+.++++.++.....+
T Consensus 388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999999988 47777777777777766665555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=277.81 Aligned_cols=365 Identities=18% Similarity=0.195 Sum_probs=273.7
Q ss_pred hHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH
Q 011388 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (487)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 127 (487)
.+..++.+.++.|..+.+..+...++|++.+|+|+|..+.|++.|.|.+++.++.++...+.||+.||++++..+.++.+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34555556666677778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q 011388 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (487)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f 203 (487)
+++++++++||+.++++|++.|+..|.+++...++..+..|++||++++++...+..++.++|.+++.++ |||+.|
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888877666 999999
Q ss_pred HhhhHHHHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccch
Q 011388 204 VLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (487)
++.+..+++.++. +..+| |+. ..++.+.+..+..++++++..+
T Consensus 171 ~~ia~l~ll~~~~~~~~lP--~~~----------------------------------~~~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP--PSE----------------------------------ISGSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC--Ccc----------------------------------CCCCCCcchhHHHHHhcCchHH
Confidence 9998888887554 45577 210 0011111222344566666644
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
..+....+.+. +.+....|...+++ ..|++... +....++++.++|+.++|++.|| +.|+.+.....+..+.
T Consensus 215 ~~l~~t~l~~~----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 215 LGLLATFLFMT----GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALA 289 (394)
T ss_pred HHHHHHHHHHc----chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHH
Confidence 44444333333 33444445544444 45777655 77888899999999999999999 8888887777776666
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC--hhhhhhHhHHHHHHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP--VNIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~g~~~~~~~~g~~i~ 437 (487)
.+.+.+.. ...+..+....+ .++ ...|....+..+..+ ++.++.+.+++....++|..+|
T Consensus 290 ~l~l~~~~--------------~~~~~~~~~~~~--wg~--a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~G 351 (394)
T COG2814 290 LLALTFTG--------------ASPALALALLFL--WGF--AFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALG 351 (394)
T ss_pred HHHHHHhc--------------chHHHHHHHHHH--HHH--HhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHH
Confidence 66655431 112222333322 222 222333333333333 5679999999999999999999
Q ss_pred HHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhc
Q 011388 438 TMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWV 471 (487)
Q Consensus 438 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
..++|.+.| .++....++.+.+.+++.++.....
T Consensus 352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 5555556666665555555444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=301.88 Aligned_cols=388 Identities=17% Similarity=0.192 Sum_probs=262.6
Q ss_pred HHHHHhhhcccccccccccchhHHHHHhhcCCChhh-HHH-----HHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh
Q 011388 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSI-----FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (487)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 124 (487)
......++.+++++|...++...|.+.++++.+.++ .++ +.++..+++.++++++|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455667788899999999999999999998644322 222 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhH--------HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh-
Q 011388 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL- 195 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~- 195 (487)
++++++++++++|++. ++++|+++|++.|+..+...+++.|++|+++|+++.++...+..+|..+++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8899999999999999999999999999999999999999888888887765432
Q ss_pred -----------hhhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhc
Q 011388 196 -----------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (487)
Q Consensus 196 -----------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (487)
..|||+.|++.++++++.++....+||+|+|...+++.++.. .+..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-----------------------~~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-----------------------REGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-----------------------cccc
Confidence 238999999988776666666677899998754322111100 0000
Q ss_pred cchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhh
Q 011388 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (487)
.+.++.++++++++ .++......... +.....++....|.|.++++ .|++... .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112245555553 222222222222 22223355666788888854 4776544 4445556778889999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhh
Q 011388 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL 421 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (487)
|+|||+.+..+.+...++...+....... ..........+.+.+.+.. .+....+..|.+|++.|++
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILINSN------------VIGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYS 378 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchH
Confidence 99999988776654333222211111100 0111222222222222222 1233467778999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhhh-h-cchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 422 AGSVATLANWLVSWIVTMTANFLLDW-S-SGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 422 ~~g~~~~~~~~g~~i~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
+.|+.+.....++.++|.+.+++.+. + ....+++..+.+++..+ ..++.||++++
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~ 435 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCC
Confidence 99987666778889999999998873 2 23334444444444433 34455776543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=304.56 Aligned_cols=409 Identities=16% Similarity=0.100 Sum_probs=272.0
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~ 123 (487)
..+..+.+..+++++++..++++..+++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.+
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 33445666777777777788899999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHH-----hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-
Q 011388 124 PNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV- 197 (487)
Q Consensus 124 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~- 197 (487)
+++++.+..++ ++|++.+++.|+++|++.+...|...+++.||+|+++|++++++...+.++|.++++.+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88887776665 589999999999999999999999999999999999999999999999999999998876432
Q ss_pred ------hhHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhh
Q 011388 198 ------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (487)
Q Consensus 198 ------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (487)
+||..|.+.+++.++. ++.+++.+|+|+.....+ .++ . ..+.. . . + ++..++++.....
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~~~-~--~--~--~~~~~~~~~~~~~ 248 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGEPI-S--E--E--DKETESTDMTKWQ 248 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccCcc-c--h--h--hhccccccCcHHH
Confidence 4888888766655554 444455677764211111 110 0 00000 0 0 0 0000000000011
Q ss_pred h-HHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch
Q 011388 271 R-FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (487)
Q Consensus 271 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (487)
. .+..++++..+. ..+..++..........|.|.++++ .|++..+ .......++.+++.++.|+++||++||
T Consensus 249 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r 324 (467)
T PRK09556 249 IFVEYVLKNPVIWL----LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR 324 (467)
T ss_pred HHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 1 122455554333 3333333333345567788888765 5787655 555566788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 347 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
+..........++...+... ... ..+...+..++.+. ...+..........|.+|++.+|++.|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~ 390 (467)
T PRK09556 325 RALVACIALALIIFTLGVYQ--HAT-----------SEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIK 390 (467)
T ss_pred chHHHHHHHHHHHHHHHHHH--hcC-----------cHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 87665443333322221111 100 11112222222221 11122122235666999999999999999
Q ss_pred HHHHHH-HHHHHHHHhhhHhh-------------hhcchhhHHHHHHHHHHHHHHHHh--cccCCCCCHHHHHh
Q 011388 427 TLANWL-VSWIVTMTANFLLD-------------WSSGGTFLIYGIVCAFTVAFVSLW--VPETKGRSLEEIQF 484 (487)
Q Consensus 427 ~~~~~~-g~~i~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 484 (487)
+...++ |++++|.+.|++.| .++...+.+..++++++.+..... ..+++.++.+++|+
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQ 464 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 999997 77999999999999 234455666655555554443333 22333334444544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=296.74 Aligned_cols=397 Identities=15% Similarity=0.134 Sum_probs=268.6
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
+.+.....++.+...++...+++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence 34444455666666677778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q 011388 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (487)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~ 204 (487)
.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+ +||+.|+
T Consensus 102 ~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 181 (434)
T PRK11663 102 NILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM 181 (434)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887765 8999999
Q ss_pred hhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhH-HHHhhcccch
Q 011388 205 LGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRF-AELKRKRYWF 282 (487)
Q Consensus 205 ~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 282 (487)
+.++..++. ++..+++||+|++...+...++.. + +.+..++. +.++.+.+..+ ...++++..+
T Consensus 182 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 246 (434)
T PRK11663 182 IAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------D---ALELAQQQ-EGAGLSRKEILTKYVLLNPYIW 246 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------c---ccccchhc-cccCCChhhhHHHHHhcChHHH
Confidence 877765544 444556788775421111000000 0 00000000 00000001111 1133444333
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc--cchHHH-HHHHHHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLL-LISSSGM 356 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~-~~~~~~~ 356 (487)
... +..+........+..|.|.+++ +.|++... .......++.++++++.|++.||+ ++|+.. ....+..
T Consensus 247 ~~~----~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 247 LLS----FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 222 2222222234456668888884 45777555 556667888999999999999998 333332 2211111
Q ss_pred HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHH
Q 011388 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 436 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 436 (487)
.+....+... ... ...........++ .+..+..........|.+|++.|+++.|+.+...++|+++
T Consensus 323 ~~~~~~~~~~---~~~----------~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 388 (434)
T PRK11663 323 LLSVGSLWLM---PFA----------SYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL 388 (434)
T ss_pred HHHHHHHHHc---ccc----------cHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH
Confidence 1111111111 000 0011111111111 1122222223356789999999999999999999999999
Q ss_pred HHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 011388 437 VTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478 (487)
Q Consensus 437 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
+|.+.|++.| .++...+...++++++.++..+...+++++++
T Consensus 389 ~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (434)
T PRK11663 389 SGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE 431 (434)
T ss_pred hcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 9999999999 66666777777777777666665565555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=290.42 Aligned_cols=354 Identities=19% Similarity=0.218 Sum_probs=264.8
Q ss_pred chhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhH
Q 011388 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (487)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~ 125 (487)
++.|....++++..+.++++....++..|.+.+++|.++++.|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 46777888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHH
Q 011388 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (487)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~ 201 (487)
+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654 8999
Q ss_pred HHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhccc
Q 011388 202 LAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (487)
Q Consensus 202 ~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (487)
.|++.++..++. .+...++||+|++..+++++++. +...+..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 218 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------------------APVLRALFGEGR 218 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------------------hhhHHHHhhhhh
Confidence 998877655544 34455678887643221111000 000011111111
Q ss_pred chhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 011388 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (487)
.+. ........+......+....|.|.++++.|.+... .......++.+++.++.|++.||+++|+.+..+.....+
T Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (406)
T PRK11551 219 ATA-TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA 297 (406)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 000 11111111222222345566788888888876655 566667788999999999999999999988776555554
Q ss_pred HHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
+.+.+... . ..+...+...+.+. ...+..+...++..|.+|+++|+++.|+.+....+|..++|
T Consensus 298 ~~~~~~~~---~------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 361 (406)
T PRK11551 298 SLAALAAA---P------------SFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP 361 (406)
T ss_pred HHHHHHhc---C------------cHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence 44433321 0 01112222222222 22233455668889999999999999999999999999999
Q ss_pred HHhhhHhhhh
Q 011388 439 MTANFLLDWS 448 (487)
Q Consensus 439 ~~~g~~~~~~ 448 (487)
.+.|.+.+.+
T Consensus 362 ~~~g~l~~~~ 371 (406)
T PRK11551 362 LLAGQLLALG 371 (406)
T ss_pred hhHhhhhccC
Confidence 9999999843
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=288.87 Aligned_cols=385 Identities=14% Similarity=0.139 Sum_probs=264.0
Q ss_pred hHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH
Q 011388 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (487)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 127 (487)
.|.....++++++.+++++..++...|.+.+|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 45566666667777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----------
Q 011388 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197 (487)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---------- 197 (487)
+++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++.+++.+
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998887542
Q ss_pred hhHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHh
Q 011388 198 NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (487)
Q Consensus 198 ~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (487)
|||+.|++.+++.++. .+.++++||+|+.... .+.++.+...+...+...+. ++.++..++++...+..+++++
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTL----EQPEGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccccc----cccccccccccccHHHHHHHhc
Confidence 8999999987776654 4455678998852100 00111111111111000000 0000000000001112233333
Q ss_pred hcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc--CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHH-HH
Q 011388 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL-LI 351 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~ 351 (487)
+ +. ++.....+++....+..+..|.|.++++. +.+... .......++.+++.++.|+++||+++|+.. ..
T Consensus 241 ~-~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~ 315 (412)
T TIGR02332 241 T-PA----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL 315 (412)
T ss_pred C-hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence 2 22 33333444444445667788999999874 444333 556777888999999999999999977643 33
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHH
Q 011388 352 SSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 431 (487)
......++. ++... ... . ......+.+...+.. ...+..+....|.+|++.|+++.|+.+...+
T Consensus 316 ~~~~~~~~~-~~~~~--~~~-----------~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~ 379 (412)
T TIGR02332 316 PYLFAAAGW-LLASA--TDH-----------N-LIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGN 379 (412)
T ss_pred HHHHHHHHH-HHHHh--cCC-----------H-HHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhh
Confidence 333333322 11111 100 0 111111111111111 1123334555778999999999999999999
Q ss_pred HHHHHHHHHhhhHhhh-h-cchhhHHHHH
Q 011388 432 LVSWIVTMTANFLLDW-S-SGGTFLIYGI 458 (487)
Q Consensus 432 ~g~~i~~~~~g~~~~~-~-~~~~~~~~~~ 458 (487)
+|++++|.+.|.+.|. + +...+.+.++
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 9999999999999993 3 4444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=288.28 Aligned_cols=370 Identities=18% Similarity=0.160 Sum_probs=246.6
Q ss_pred hhHHHHHHHhhhcccccccccccchhHHHHHhhcC---CChhhHHHHHHHH---HHHHHHHHHHHHHHHhhhchhHHHHh
Q 011388 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLK---LTISEFSIFGSLA---NVGAMVGAIASGQIAEYIGRKGSLMI 120 (487)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s~~---~~~~~~~~~~~g~l~d~~Grr~~~~~ 120 (487)
+++..+...+++.+.+++|...++...|.+.+|++ .+..+.+...+.+ .++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34456666677888899999999999999999984 5555554444444 44555999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcChh--------HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHH
Q 011388 121 AAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (487)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (487)
+.++++++++++++++|+. .++++|+++|++.|+..+...+++.|++|+++|+++.++...+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 58899999999999999999999999999999999999988888888877765
Q ss_pred hhh------------hhhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHH
Q 011388 193 LGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (487)
Q Consensus 193 l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (487)
+.. ..|||+.|++.++++++.......+||+|++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------- 227 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------- 227 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-------------------------------
Confidence 432 2389999999888777766666667887642100
Q ss_pred hhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHH
Q 011388 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNT 337 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (487)
+ .++..+++++++++..+...+.. .+.....++....|.|.++++ .|.+..+ .......+...++.++.|
T Consensus 228 -~---~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 228 -A---LKEAGSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred -h---hcccccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00012355666654433222221 111122344566778887754 5776544 444555666778888999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh
Q 011388 338 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417 (487)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 417 (487)
+++||++||+.+.....+..+....+........ ..........+.....+ ...+....+..|.+|++
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS-----------SPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQ 368 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC
Confidence 9999999998876655443332221111110000 01111111111111111 11233457889999999
Q ss_pred hhhhHhHHHHHHHHH-HHHHHHHHhhhHhhhhcchh-hHHHHHHHHHHHHH
Q 011388 418 IKSLAGSVATLANWL-VSWIVTMTANFLLDWSSGGT-FLIYGIVCAFTVAF 466 (487)
Q Consensus 418 ~~~~~~g~~~~~~~~-g~~i~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 466 (487)
.|+++.|+.+...+. .+...|.+.+.+.+.+.+.. +.+.+++.++..+.
T Consensus 369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 369 VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999877665 35557888886544443333 33334444444333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=289.29 Aligned_cols=361 Identities=17% Similarity=0.147 Sum_probs=262.5
Q ss_pred hHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH
Q 011388 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (487)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 127 (487)
++.....+.++.+.++++.....+.+|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33445566677777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q 011388 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (487)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f 203 (487)
+.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+...+ +||+.|
T Consensus 96 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 96 GTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877654 899999
Q ss_pred HhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchh
Q 011388 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (487)
++..+..++........||++++..++.+.+ + +..+...+.....++++++++..+.
T Consensus 176 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (426)
T PRK12307 176 FVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------G-----------KHSQSAWSVFSLSMKGLFNRAQFPL 232 (426)
T ss_pred HHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------c-----------cccccchhhhhHHHHHHHhhchHHH
Confidence 8865544443333334566654321110000 0 0000000111224566777665544
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (487)
........+ ........+..+.|.++++.|.+... .......++.++++++.+++.||++||+.+..+.+...+..+
T Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 311 (426)
T PRK12307 233 TLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF 311 (426)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 333322222 22222334556778888877876554 455666788999999999999999999988877766554443
Q ss_pred HHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHH-hcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 011388 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF-SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
.+... ... .. .......++.++ ..+..+....++.|.+|++.|+++.|+.+....+++.++|.+
T Consensus 312 ~~~~~---~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 312 PLFRI---PQD-----------NY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred HHHHH---ccc-----------cH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence 33221 000 01 111122222222 223334445778899999999999999999999999999999
Q ss_pred hhhHhhh
Q 011388 441 ANFLLDW 447 (487)
Q Consensus 441 ~g~~~~~ 447 (487)
.|++.+.
T Consensus 377 ~g~l~~~ 383 (426)
T PRK12307 377 ATWLGIT 383 (426)
T ss_pred HHHHHHc
Confidence 9999983
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=282.07 Aligned_cols=350 Identities=12% Similarity=0.071 Sum_probs=253.1
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
.......+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.+++
T Consensus 23 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (390)
T PRK03545 23 TTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLI 102 (390)
T ss_pred hHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33334556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhh-hh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LF 218 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~-~~ 218 (487)
+|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+ |||+.|++.++..++..+. ..
T Consensus 103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888665 8999999988776665433 34
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhc
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (487)
.+||.|+. + +....+.++.++++..+............
T Consensus 183 ~~~~~~~~-----~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (390)
T PRK03545 183 LLPLLPSE-----H---------------------------------SGSLKSLPLLFRRPALVSLYLLTVVVVTA---- 220 (390)
T ss_pred hCCCCCCC-----C---------------------------------cchHHHHHHHHhCcHHHHHHHHHHHHHHH----
Confidence 45664320 0 00011234566666544333222222221
Q ss_pred hhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 299 INGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 299 ~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
......+.+.+.++ .|.+... .......++.++++++.+++.||+++|... .+.....++...+... .
T Consensus 221 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--~------ 291 (390)
T PRK03545 221 HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--A------ 291 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--h------
Confidence 22223444555554 4766554 555667788999999999999999987654 3333333333322211 0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
...+.......+.+.+. ....+.......+..| +.++++.|+.+...++|..+||.+.|.+.| .+....+.
T Consensus 292 ------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~ 363 (390)
T PRK03545 292 ------NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGY 363 (390)
T ss_pred ------chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence 01122222333333332 2333444466677766 578999999999999999999999999999 66777777
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 011388 455 IYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~ 472 (487)
..+.+.+++.++.+...+
T Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 364 VGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 777777777666655554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=348.60 Aligned_cols=423 Identities=36% Similarity=0.589 Sum_probs=328.1
Q ss_pred hhhcccccccccccchhHHHHH--hhcCCC---------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh
Q 011388 56 ALGPIQFGFTCGYSSPTQAEII--SDLKLT---------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (487)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~i~--~~~~~s---------~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 124 (487)
.++.+..+++...++...+... .+++.+ ..+.+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455777788877777655444 222222 23578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----
Q 011388 125 NIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (487)
Q Consensus 125 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---- 197 (487)
..+++++.++++ |++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|..++..++...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999998888776543
Q ss_pred h---hHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHH
Q 011388 198 N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE 274 (487)
Q Consensus 198 ~---wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (487)
+ ||+.+.+.++++++..+..+++||||+|+.+++|.+|+++.++++++.+.+.++..+..++. ++ .++.+..+++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEK-KE-SQESKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccc-cc-ccccceeeee
Confidence 4 99999999999888888888999999999999999999999988665532222211111111 11 1111155677
Q ss_pred Hhhccc-chhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 011388 275 LKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 353 (487)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 353 (487)
+++++. +++......+..+....+.+....|.+.++++.+.+..........+...++.+++.++.||+|||+.+..+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777644 4555666666666666666777888888888877766644445556777788888889999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHH
Q 011388 354 SGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLV 433 (487)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 433 (487)
..++++.+.++........ .+ .......+....+....++.++.+..+.+..|.+|++.|+++.|+....+.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~ 397 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVS---SS---SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG 397 (451)
T ss_pred ccccccccccccccccccc---cc---cccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 8877776666511111100 00 01122333344444556666777888899999999999999999999999999
Q ss_pred HHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhh
Q 011388 434 SWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 486 (487)
Q Consensus 434 ~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
++++|.+...+.+ .+....+.++++++++..++.++++||||+++++|++++|
T Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999999988887 4447778888888888888889999999999999999976
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=283.94 Aligned_cols=376 Identities=18% Similarity=0.157 Sum_probs=265.7
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~ 123 (487)
.++++|.....+.++.+.++++....+++.|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34566777777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h-
Q 011388 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N- 198 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~- 198 (487)
+.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ +
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665 4
Q ss_pred -hHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhh
Q 011388 199 -WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR 277 (487)
Q Consensus 199 -wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (487)
||+.|++.++..++.++....+||++++..+++++++..+..++..+..+.. + ...++.....+..
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~-- 232 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI-------A----NIVMTLAAAMVQS-- 232 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh-------h----hhhhhhhHHhhhh--
Confidence 9999998777766666666678888765433222221111111111100000 0 0000000011110
Q ss_pred cccchhHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 011388 278 KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 354 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 354 (487)
.+..+......................+.|.++. +.|.+..+ .......++.+++.++.+++.||++||+.+..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 233 AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 1111111111111111111112234445566554 45776555 55566788899999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHH
Q 011388 355 GMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVS 434 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 434 (487)
...+........ .. ..+...+...+. .....+..+....+..|.+|++.|+++.|+.+...++|+
T Consensus 313 ~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 377 (405)
T TIGR00891 313 AGQLLIIPVFAI---GA-----------NVAVLGLGLFFQ-QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGG 377 (405)
T ss_pred HHHHHHHHHHHh---CC-----------chHHHHHHHHHH-HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHH
Confidence 543222221110 10 111222222222 223334445556888999999999999999999999999
Q ss_pred HHHHHHhhhHhhh
Q 011388 435 WIVTMTANFLLDW 447 (487)
Q Consensus 435 ~i~~~~~g~~~~~ 447 (487)
.++|.+.|.+.|.
T Consensus 378 ~~g~~~~g~l~~~ 390 (405)
T TIGR00891 378 ALAPIIGALLAQR 390 (405)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999993
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=278.78 Aligned_cols=370 Identities=11% Similarity=0.077 Sum_probs=260.9
Q ss_pred hHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH
Q 011388 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (487)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 127 (487)
.|.+...++++.+..... ...++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 445555555554433333 6677999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHH
Q 011388 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVL 202 (487)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~ 202 (487)
+.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.++..+ +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999997 7899999999988888888777776653 79988
Q ss_pred HHhhhHHHHHHHhhhhcc-CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccc
Q 011388 203 AVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (487)
Q Consensus 203 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (487)
+...++..++..+.++.. ++.|+ .+ ++++ ...++.++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------------~~~~----~~~~~~l~~~~~ 207 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSAREVA-------SS---------------------------HKTT----TTPVRVVFTPRA 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-------cc---------------------------cCCC----cCCcccccCHhH
Confidence 766555444433333222 22111 00 0000 011122233332
Q ss_pred hhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
+... +..+.....+.....|.|.++++.|.+... ....+..++.++++++.+++.||.+||+....+..+..++
T Consensus 208 ~~l~----~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 208 WTLG----VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 2222 222222233456677888888888877654 6677788999999999999999999999888877666665
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccC-ChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL-PVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
..++... .. ...... ..+.+.+.+ ...|.......+.. |++.+++..|+.+...++++.++|
T Consensus 284 ~~~~~~~---~~-----------~~~~~~--~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp 346 (393)
T PRK09705 284 FCGFIWL---PL-----------QLPVLW--AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAP 346 (393)
T ss_pred HHHHHHc---cc-----------hHHHHH--HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544321 00 001111 112222222 22343434555555 467899999999999999999999
Q ss_pred HHhhhHhh-hh-cchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 011388 439 MTANFLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478 (487)
Q Consensus 439 ~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
.+.|++.| .+ +...+.+.+.++++..++...+.+|++.+.
T Consensus 347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 347 WFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999 44 344455556666666566666777776654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=256.10 Aligned_cols=416 Identities=17% Similarity=0.178 Sum_probs=315.2
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~ 123 (487)
..+.+|...+....++..+.+..-..+.+.|.+.+.+|.+..|..++....+.|..+++..+|.++|++|||+.+.+...
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 34567777777888887777766666777888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hh
Q 011388 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w 199 (487)
..++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++... ||
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999 899999999999999998876666 88888988887776554 99
Q ss_pred HHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhh----------hHHHHH----HHHHhhhcc
Q 011388 200 RVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI----------SIEVNE----IKRSVASSS 265 (487)
Q Consensus 200 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~~~ 265 (487)
||.......+..+...+.+.+|||||++..+++.+++.+.++++.+.|... .++.++ ..+...+..
T Consensus 230 r~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ 309 (528)
T KOG0253|consen 230 RYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAA 309 (528)
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccc
Confidence 999888888888888888889999999999999999999999998766321 111111 111111222
Q ss_pred chhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcC--------------------CCch-h-HHHH
Q 011388 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG--------------------ISSS-N-VATF 323 (487)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~-~-~~~~ 323 (487)
++......+++.++.++. .+.....++.+...++........+++..+ .+.. . .-..
T Consensus 310 ke~rg~~~nLlsp~lrkt-tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdll 388 (528)
T KOG0253|consen 310 KEVRGGTTNLLSPKLRKT-TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLL 388 (528)
T ss_pred cccccchHhhcChHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHH
Confidence 334445666666543333 333333444333344555555555544221 1111 1 3455
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcc
Q 011388 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
+..+....|.++.+++.||+|||+.+..+++++++..+++..+... ....... +..-.+..+..
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r---------------n~~tvll-f~arafisg~f 452 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR---------------NAYTVLL-FTARAFISGAF 452 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc---------------chhHHHH-HHHHHHHhchh
Confidence 6678899999999999999999999999888888777766654111 1111222 22222233333
Q ss_pred cchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 011388 404 AIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479 (487)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
...+.|..|.+|+..|+++.|.+.....+|+++.|+++ ...+...+.+..+++++++++.+...++--|+|+|.+
T Consensus 453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 45569999999999999999999999999999999999 5555667778889999999999888888889998863
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=279.60 Aligned_cols=379 Identities=16% Similarity=0.160 Sum_probs=251.2
Q ss_pred HHHHHHhhhcccccccccccchhHHH-HHhhc--CCChhhHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhHHHHhh
Q 011388 50 FCVLVVALGPIQFGFTCGYSSPTQAE-IISDL--KLTISEFSIFG-----SLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (487)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~ 121 (487)
.......++.+.+++|...++.+.|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 35566667888899999988887774 55555 67766 46554 345567789999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcChh--------HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHh
Q 011388 122 AVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (487)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 193 (487)
.++++++++++++++|++ .++++|+++|++.|+..+....++.|++|+++|++..+..+.+..+|.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588999999999999999999999999999999999999999999999888655
Q ss_pred hh------------hhhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHh
Q 011388 194 GL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV 261 (487)
Q Consensus 194 ~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (487)
.. ..+||+.|++.+++.++........||+|+|..++++.++
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~-------------------------- 234 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA-------------------------- 234 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc--------------------------
Confidence 43 2389999999887766655555567888865332211100
Q ss_pred hhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHH
Q 011388 262 ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTW 338 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~ 338 (487)
.+++....+.+++++..+..... ..++.....+....|.|.+.++ .|.+... ......++..+++.++.|+
T Consensus 235 ---~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~ 308 (438)
T PRK09952 235 ---AKKRIPVIEALLRHPGAFLKIIA---LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAW 308 (438)
T ss_pred ---ccccCCHHHHHHHchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011223333332222111 1122222234455666766643 5665543 2333456677888899999
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhh
Q 011388 339 LMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI 418 (487)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (487)
++||++||+.+..+.+...++...+.......+ ..+.......+...+.+ ...+..+++..|.+|++.
T Consensus 309 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 309 LADRFGRRRVYITGALIGTLSAFPFFMALEAQS-----------IFWIVFFSIMLANIAHD-MVVCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCcch
Confidence 999999999887766554443332222111110 11121222222222222 223445688999999999
Q ss_pred hhhHhHHHHHH-HHHHHHHHHHHhhhHhh-hh--cchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 419 KSLAGSVATLA-NWLVSWIVTMTANFLLD-WS--SGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 419 ~~~~~g~~~~~-~~~g~~i~~~~~g~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
|+++.|+.+.. ..+++.++|.+.+++.+ .+ +...+.+.+++.+++.+ ..+..+++
T Consensus 377 r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v-~~~~~~~~ 435 (438)
T PRK09952 377 RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM-TALLMKDN 435 (438)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHcccc
Confidence 99999997655 45899999999999988 32 23334444444444433 34445553
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=275.38 Aligned_cols=346 Identities=13% Similarity=0.108 Sum_probs=239.2
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHH
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (487)
..+++.+|.+.+|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.++++|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999877665555554443344489999999999
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH-HhhhhccC
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIP 221 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~ 221 (487)
++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++.++..+ |||+.|++.++++++. ++.++++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986 556666779999999999999999999999999999888777 9999999866665554 45566789
Q ss_pred CChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhh
Q 011388 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (487)
Q Consensus 222 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (487)
|+|++.. +.. + . ++...+++++++++..+... ...++....++.
T Consensus 167 ~~p~~~~---~~~--------------~-------~--------~~~~~~~~~ll~~~~~~~~~----~~~~~~~~~~~~ 210 (368)
T TIGR00903 167 ALPFQAA---EGF--------------G-------F--------KDAVKEFGALAGRKDLWIIG----AILGFGVALFDN 210 (368)
T ss_pred CCCCCCC---CCc--------------c-------h--------HHHHHHHHHHHcChhHHHHH----HHHHHHHHHHHH
Confidence 9876311 000 0 0 00011356677776644333 334444445667
Q ss_pred HHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccch---HHHHH-HHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR---LLLLI-SSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
+..|.|.++++.|++... .....+..+.+.+..++++||..|| +.... .....++....+... .
T Consensus 211 ~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---~------- 278 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE---L------- 278 (368)
T ss_pred HHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc---c-------
Confidence 788999999887776432 2222333344444557888887543 32222 222222222222210 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHH
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 457 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~ 457 (487)
....... .......+.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +....+.+++
T Consensus 279 -----~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~ 351 (368)
T TIGR00903 279 -----NRLALFA-FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLA 351 (368)
T ss_pred -----ccHHHHH-HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 0111122 22222233333335566889999999999999999999999999999999988874 4456677777
Q ss_pred HHHHHHHHHHH
Q 011388 458 IVCAFTVAFVS 468 (487)
Q Consensus 458 ~~~~~~~~~~~ 468 (487)
+..+++.+...
T Consensus 352 ~~~~i~~~~~~ 362 (368)
T TIGR00903 352 ILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=276.53 Aligned_cols=350 Identities=20% Similarity=0.244 Sum_probs=233.9
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHH-HHH-----HHHHHHHHHHHHHHHhhhchhHHHHhhh
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFG-SLA-----NVGAMVGAIASGQIAEYIGRKGSLMIAA 122 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~~g~l~d~~Grr~~~~~~~ 122 (487)
+.....++++.+.+++|...+++..|.+.+|++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 3357777889999999999999999999999999888765443 332 2233478999999999999999999999
Q ss_pred hhHHHHHHHHHHhcChhH--------HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh
Q 011388 123 VPNIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
.++++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 688999999999999999999999999999999999998888777776666554
Q ss_pred hh------------hhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhh
Q 011388 195 LF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262 (487)
Q Consensus 195 ~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (487)
.. .|||+.|++..+...+........||++++..++ +
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------~ 222 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------------------H 222 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-------------------------------h
Confidence 43 3899999986554333222222334432211000 0
Q ss_pred hccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHH
Q 011388 263 SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWL 339 (487)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l 339 (487)
+.+.+..++...+++. .........+.....++.+..|.|.++++ .|++..+ .......++.+++.++.|++
T Consensus 223 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 297 (434)
T PRK15075 223 --RPSMREIFRSLAANWR---IVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGAL 297 (434)
T ss_pred --ccccccHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111222222211 11111222222333455677888988876 5886554 45556678889999999999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhh
Q 011388 340 MDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK 419 (487)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 419 (487)
+||++||+.+..+.....+........ ..... ..........+...+++ ...+....+..|.+|++.|
T Consensus 298 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~r 365 (434)
T PRK15075 298 SDRIGRRPVLIAFTVLAILTAYPALSW-LVAAP----------SFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVR 365 (434)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHH-HHcCC----------chHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCcc
Confidence 999999998776544432221111101 00100 00111111111222222 2233445788999999999
Q ss_pred hhHhHHHHHHHH-HHHHHHHHHhhhHhh
Q 011388 420 SLAGSVATLANW-LVSWIVTMTANFLLD 446 (487)
Q Consensus 420 ~~~~g~~~~~~~-~g~~i~~~~~g~~~~ 446 (487)
+++.++.+.... +++.++|.+.|++.|
T Consensus 366 g~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 366 TAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred chheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999755555 468889999999998
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=278.45 Aligned_cols=390 Identities=12% Similarity=0.114 Sum_probs=252.2
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
|.++...++.....+.++...+...|.+.++ |+|+.+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence 3444444444454555555566778889888 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHH-HHHHhhhh----hhh
Q 011388 129 WLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLF----VNW 199 (487)
Q Consensus 129 ~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~----~~w 199 (487)
.+.+++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .++.++.. .+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw 186 (452)
T PRK11273 107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW 186 (452)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence 99988864 7888999999999999999898888999999999999999999999998864 45544322 289
Q ss_pred HHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhh-HHHHhh
Q 011388 200 RVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-FAELKR 277 (487)
Q Consensus 200 r~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (487)
|+.|++.++..++. ++..+++||+|+....+. +++..+ +.. ++.+++ ++++.+.++. .+.+++
T Consensus 187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~------~~~-------~~~~~~-~~~~~~~~~~~~~~~~~ 251 (452)
T PRK11273 187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN------DYP-------DDYNEK-HEQELTAKQIFMQYVLP 251 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh------ccc-------cccccc-cCCCccHHHHHHHHHHc
Confidence 99999877665554 455566788875321111 111000 000 000000 0000001111 122445
Q ss_pred cccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc--cchHHHH-H
Q 011388 278 KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLL-I 351 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~-~ 351 (487)
++..+...+...+.. ...+....|.|.++++ .|++... .......++.+++.++.|+++||+ +||.... .
T Consensus 252 ~~~~~~~~l~~~~~~----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~ 327 (452)
T PRK11273 252 NKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 327 (452)
T ss_pred ChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHH
Confidence 554333333322222 2234566788888876 4776444 455566788889999999999998 4444322 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHH
Q 011388 352 SSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 431 (487)
...+..++...+.. .... ..+...+.+...+... .+.......+..|.+|++.||++.|+.+...+
T Consensus 328 ~~~l~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 393 (452)
T PRK11273 328 FMTLVTIATIVYWL--NPAG-----------NPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 393 (452)
T ss_pred HHHHHHHHHHHHHH--hccc-----------ChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHH
Confidence 22222222222111 0000 0111112222222211 12112223466799999999999999999999
Q ss_pred HHHHH-HHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 432 LVSWI-VTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 432 ~g~~i-~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
+|+.+ +|.+.|.+.| .++...+.+.+++++++.+....+.+
T Consensus 394 ~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 394 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 98765 7999999999 56667777777776666655544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.01 Aligned_cols=379 Identities=13% Similarity=0.067 Sum_probs=269.7
Q ss_pred hHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH
Q 011388 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (487)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 127 (487)
+|..+..++++.++..+|.++++..+|.+.+|+|.+.++.+|+.+.|.+++..+++++|+++||+|||+++..+..++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56678888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhC-CcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 011388 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (487)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~ 202 (487)
+++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++.....++|..+||.+++.+ +|||.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999999998888887776 678999999999999999999999999877 89999
Q ss_pred HHhhhHHHHHHH-hhhhccCCChHHHHhcCChHHHHHHH---------HHHhCCChhhhHHHH------------HHHHH
Q 011388 203 AVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSL---------QVLRGFDTDISIEVN------------EIKRS 260 (487)
Q Consensus 203 f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------------~~~~~ 260 (487)
|++.....++.+ +..+++||+|+.. +++.+...... ..+.....+...... .....
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~ 241 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR 241 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999877666654 3445577765311 11111111000 000000000000000 00000
Q ss_pred hhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHH
Q 011388 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNT 337 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g 337 (487)
.+.+ .+.+.-..++++++.........+.... .......+.|.+++. .|+++.+ ....+..++..++.++.|
T Consensus 242 ~e~~-~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 242 TQLA-ASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HHhc-CCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1111222456666654433333222222 234455677777765 4777655 666777888999999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh
Q 011388 338 WLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN 417 (487)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 417 (487)
++.||+|+|+.+..+..+..++..++....... ..+.......+.+.+.+... +.......+..|++
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~ 383 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLAMTDFST------------QQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPE 383 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC------------chHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHH
Confidence 999999999988877777666665544321100 01122223333344443332 33346667788999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 418 IKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 418 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
+++.+.++.+..+.+|+.+|+.+.|.+.+
T Consensus 384 ~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 384 KAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=272.55 Aligned_cols=354 Identities=18% Similarity=0.166 Sum_probs=247.9
Q ss_pred ccccccccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc----
Q 011388 62 FGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---- 136 (487)
Q Consensus 62 ~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---- 136 (487)
..++.++..|.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.++++.
T Consensus 27 ~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 27 SYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33666777788886 6789999999999999999999999999999999999999999999999888877665542
Q ss_pred ----ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhH
Q 011388 137 ----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (487)
Q Consensus 137 ----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~ 208 (487)
+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.+++.++
T Consensus 107 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 186 (399)
T PRK05122 107 WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIML 186 (399)
T ss_pred cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5668899999999999999999999999999999999999999999999988888887765 89998887666
Q ss_pred HHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHH
Q 011388 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (487)
Q Consensus 209 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (487)
..++..+.....|++++ .+ + ++.+.++.+++. +......
T Consensus 187 ~~~~~~~~~~~~~~~~~-----~~-~---------------------------------~~~~~~~~~~~~--~~~~~~~ 225 (399)
T PRK05122 187 LALLGLLLARPRPAVPP-----VK-G---------------------------------ERLPFRRVLGRV--WPYGMGL 225 (399)
T ss_pred HHHHHHHHHhcCCCCCC-----CC-c---------------------------------cchhHHHHHHHH--HHHHHHH
Confidence 55544433333333221 00 0 000111111110 1111111
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 011388 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
.+..+ .+.....+.+.++.+.+.+..........++.+++.++.+++.||+++|+.+..+.....++..++...
T Consensus 226 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--
Confidence 11111 122344556666666666444455666778888999999999999999998887777666665555432
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-h
Q 011388 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W 447 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~ 447 (487)
. ..+.......+.+.+.+. ..+.......|..|++.|+++.|+++....+|..++|.+.|.+.+ .
T Consensus 300 -~------------~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 365 (399)
T PRK05122 300 -P------------SPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF 365 (399)
T ss_pred -c------------cHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 112222333333333332 234444566788999999999999999999999999999999988 5
Q ss_pred hcchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 448 SSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
++...+.+.+++++++.++... .++++++
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (399)
T PRK05122 366 GYPSIFLAAALAALLGLALTWL-LYRRAPR 394 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 6666666666666665544443 4444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=277.54 Aligned_cols=402 Identities=17% Similarity=0.170 Sum_probs=270.1
Q ss_pred hhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHH
Q 011388 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (487)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~ 126 (487)
..+.....++++.+..+++....++.+|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44456666677777788898999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 011388 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (487)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~ 202 (487)
++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766 89999
Q ss_pred HHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHH------HHHHhhhccchhhh------
Q 011388 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE------IKRSVASSSRRTAI------ 270 (487)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------ 270 (487)
|++.++..++.++....+||++++..+++++++..+..+.....+......... ..............
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 988666555555555567887665333222211111111111100000000000 00000000000000
Q ss_pred ----hH--HHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhh
Q 011388 271 ----RF--AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (487)
Q Consensus 271 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (487)
.+ .....++..++.........+...........+.|.+++ +.|++... .......++.+++.++.|++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000001111122222222222222222335567788885 66777655 5666778889999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhh
Q 011388 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL 421 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (487)
|+++|+.+..+..+..+..+.+... .. .. ............+.+.+..+....+..|.+|++.|++
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~---~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAI---GG----------AN-VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAA 402 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhc---cc----------cH-HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhc
Confidence 9999998777665544443322211 00 01 1111122222222333444555578889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHH
Q 011388 422 AGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAF 462 (487)
Q Consensus 422 ~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~ 462 (487)
++|+.+....+|+.++|.+.|.+.| .++...+...++++.+
T Consensus 403 ~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 403 GLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5555555444443333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=259.80 Aligned_cols=356 Identities=15% Similarity=0.106 Sum_probs=250.7
Q ss_pred ccccccchhHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-----cC
Q 011388 64 FTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KD 137 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~ 137 (487)
......+++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++.+++ +|
T Consensus 48 ~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s 127 (462)
T PRK15034 48 CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP 127 (462)
T ss_pred HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 555677888888876 899999999999999999999999999999999999999999999999999999987 89
Q ss_pred hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh----------------------
Q 011388 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL---------------------- 195 (487)
Q Consensus 138 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~---------------------- 195 (487)
++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++..
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999998 6788999999999999999999999997666666654433321
Q ss_pred hhhhHHHHHhhhHHHHHHHhhhh-ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHH
Q 011388 196 FVNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE 274 (487)
Q Consensus 196 ~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (487)
..+||...++..++.++..+..+ +.++.|. ++....+..+
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------~~~~~~~~~~ 247 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------SRASIADQLP 247 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------cccCHHHHHH
Confidence 12478777776665555544443 3444321 1112234555
Q ss_pred HhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 011388 275 LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (487)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (487)
.+|++..|. ..+.+++.++.+..+..+.|++.++ .++... ....+..+...+.++++|+++||+|+++++..+
T Consensus 248 vlk~~~~Wl----lslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~ 322 (462)
T PRK15034 248 VLQRLHLWL----LSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN 322 (462)
T ss_pred HhCCCchhH----HHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence 777777443 3344455555566777788888766 333322 223445677888999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCCh----------------
Q 011388 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV---------------- 416 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------- 416 (487)
.+.+.++...+........ ....+.....++.+....+.+..+ .+-++.+.+|+
T Consensus 323 ~i~~~i~~~~~~l~lp~~~---------~~~~~~~~~~~~~l~~~~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~ 392 (462)
T PRK15034 323 FIFMAIFSALLFLTLPGTG---------SGNFIAFYAVFMGLFLTAGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQA 392 (462)
T ss_pred HHHHHHHHHHHHHHhcccc---------ccHHHHHHHHHHHHHHHhcccchH-HHHhhHHHHhhhhhhcccccccchhHH
Confidence 8776666544333221100 011122222222222333333323 33556666663
Q ss_pred -----hhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 417 -----NIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 417 -----~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
++-|.+.|+....+.+|+++.|.+.|...+ .++...++.+.+..+++.++.+.++.++
T Consensus 393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 146789999999999999999999999888 3344457777777777777776665443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=271.89 Aligned_cols=347 Identities=15% Similarity=0.079 Sum_probs=250.2
Q ss_pred ccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHH
Q 011388 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (487)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (487)
....++..|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhh-hhcc
Q 011388 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFI 220 (487)
Q Consensus 146 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~-~~~~ 220 (487)
++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++...+ +||+.|++.++..++..+. .+++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999988888889999987 6799999999999999987765554433 7999999888776665444 3445
Q ss_pred CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchh
Q 011388 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (487)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (487)
+|+|+.. .+++ ++.++++.+.++.++++..+..........+ ...
T Consensus 178 ~~~~~~~-~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 222 (377)
T TIGR00890 178 GYPPGQL-IKTN------------------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAV----SGL 222 (377)
T ss_pred ecCchhc-cccC------------------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhH----HHH
Confidence 5543210 0000 0000111233455666554433333222222 122
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
....+.+.+.++.+.+... .......++.++++++.+++.||++||+.+..+.....++.+.+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------- 292 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM---------- 292 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc----------
Confidence 2334445556667776544 5566678889999999999999999999988877777766655543210
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHH
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYG 457 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~ 457 (487)
...........+.+...+ ...+....+..|.+|+++|+++.|+.+....+|+.++|.+.|.+.+ .++...+.+.+
T Consensus 293 ---~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~ 368 (377)
T TIGR00890 293 ---LNDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTG 368 (377)
T ss_pred ---chhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence 001111122222222222 2234445788899999999999999999999999999999999988 55555565555
Q ss_pred HHHHH
Q 011388 458 IVCAF 462 (487)
Q Consensus 458 ~~~~~ 462 (487)
++.++
T Consensus 369 ~~~~~ 373 (377)
T TIGR00890 369 AFALT 373 (377)
T ss_pred HHHHH
Confidence 54444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=263.39 Aligned_cols=338 Identities=17% Similarity=0.171 Sum_probs=237.8
Q ss_pred ccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHH
Q 011388 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (487)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (487)
...+.+|.+.+++|+++++.|+..+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh-hccCC
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~-~~~~e 222 (487)
+|++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+ +||+.|++.++..++..+.. ..+||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999988776 89999998776666554333 34666
Q ss_pred ChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhH
Q 011388 223 SPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302 (487)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
+|+. + ++...+.++.++++..+......+.... .....
T Consensus 198 ~~~~------~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~ 235 (394)
T PRK10213 198 LPGE------P--------------------------------SHQKQNTFRLLQRPGVMAGMIAIFMSFA----GQFAF 235 (394)
T ss_pred CCcc------c--------------------------------ccchhHHHHHhcCHHHHHHHHHHHHHHH----HHHHH
Confidence 5320 0 0001122344555544433332222222 12222
Q ss_pred Hhh-HHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 011388 303 LFY-SSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 379 (487)
Q Consensus 303 ~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
..+ .|.+.++.|++... ......+++.+++.++.+++.||.+++.......+.......+....
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~------------- 302 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWG------------- 302 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh-------------
Confidence 334 46666667877655 55666778899999999999999644433333222222222222211
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHH
Q 011388 380 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGI 458 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~ 458 (487)
...+.......+.+.++.. ..+...+.+.+..| +.++.+.+......++|..+||.+.|++.| .+....+...+.
T Consensus 303 --~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~ 378 (394)
T PRK10213 303 --SDKIVATGVAIIWGLTFAL-VPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGT 378 (394)
T ss_pred --hhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 1112223333334433332 23444456777777 446677788888889999999999999999 554444444444
Q ss_pred HHHHHH
Q 011388 459 VCAFTV 464 (487)
Q Consensus 459 ~~~~~~ 464 (487)
+.++..
T Consensus 379 ~~~~~~ 384 (394)
T PRK10213 379 LMLLTA 384 (394)
T ss_pred HHHHHH
Confidence 444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=271.27 Aligned_cols=380 Identities=17% Similarity=0.179 Sum_probs=262.4
Q ss_pred cccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhH
Q 011388 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (487)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (487)
...++...++...|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 34467778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhh
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~ 216 (487)
++++|+++|++.+...+....++.|++|+++|++++++.+...++|..+++.+++.+ +||+.|++.++..++..+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 8999999887766665443
Q ss_pred -hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHH
Q 011388 217 -LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (487)
Q Consensus 217 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (487)
.+..||+|+..... ++++.....+... .+...+++++..+...++.++++..+...... +..
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 227 (399)
T TIGR00893 165 WLKFIPDPPQKAKWL-TEEEKYIVVGGLL------------AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQ----FLV 227 (399)
T ss_pred hhheecCCCCccccC-CHHHHhhcchhhc------------cccccccccCCCccchHHHhcCHHHHHHHHHH----HHH
Confidence 44466655311000 1110000000000 00001111122333456666665543333332 222
Q ss_pred hhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 011388 296 LSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL-LISSSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
.........+.|.++++ .+.++.. .......++.+++.++.+++.||++||+.. ........++.+..........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN 307 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 33344556667777654 4665444 556667788899999999999999988621 1111111111111111111111
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh-c
Q 011388 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-S 449 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~-~ 449 (487)
. ....+ ....... ..++..+..+....+..|..|++.|+++.|+.+....+|+.++|.+.|.+.| .+ +
T Consensus 308 ~--------~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~ 377 (399)
T TIGR00893 308 Y--------VNIPY-AALALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF 377 (399)
T ss_pred c--------chhHH-HHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence 0 00111 1222222 2223333567777999999999999999999999999999999999999999 44 5
Q ss_pred chhhHHHHHHHHHHHHHH
Q 011388 450 GGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (487)
...+.+.+++.+++.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 378 AGALMVVAALALIGALSY 395 (399)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 555666666655555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=262.58 Aligned_cols=429 Identities=19% Similarity=0.198 Sum_probs=313.5
Q ss_pred hcCCcchhHHHHHHHhhhcccccccccccchhHHHHHhhc-C-------CChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011388 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-K-------LTISEFSIFGSLANVGAMVGAIASGQIAEYI 112 (487)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~ 112 (487)
.....|+....+.+...+.+.++||...++.+.|.+...+ | .++.-.+.+..+..+|.++||+++|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445688888999999999999999999999999887765 2 3445678999999999999999999999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHhc-------ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH
Q 011388 113 GRKGSLMIAAVPNIIGWLIISFSK-------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (487)
Q Consensus 113 Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 185 (487)
|||+++...++++.++++++++.. -..++...|++.|+|.|+-+|...+..+|...+++||...+...+..+.
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999888763 2468889999999999999999999999999999999988888777777
Q ss_pred HHHHHHHhhhhh-------------------hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcC-ChHHHHHHHHHHhC
Q 011388 186 GIMLAYLLGLFV-------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG-MTEDFESSLQVLRG 245 (487)
Q Consensus 186 g~~~~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~~~~ 245 (487)
|...|.+++-.+ -||..+.++++++++.+...+.+||++++..... +.+.+. ++..+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k 268 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKK 268 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccc
Confidence 777776655433 3999999999999999999999999998753222 222222 11111
Q ss_pred CChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--H---
Q 011388 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--V--- 320 (487)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~--- 320 (487)
.... +.+.++..+...+.++.....+...+..+ .-..++.....++..-..++....+...++++.|+.+.. .
T Consensus 269 ~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~ 346 (538)
T KOG0252|consen 269 VLSV-DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL 346 (538)
T ss_pred cccc-ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence 1101 00000000000111111111233333333 234566777777777777788888888888877665443 1
Q ss_pred ------HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHH
Q 011388 321 ------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTV 394 (487)
Q Consensus 321 ------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (487)
...+...+.++|..+...++|++|||+..+.++.++.+..+.++...... ......++...+.
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-----------~~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-----------ENTIGFVVLYSLT 415 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-----------cccCceeehHHHH
Confidence 12222334445777778889999999999999999988887777542210 0111223333344
Q ss_pred HHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh------hhcchhhHHHHHHHHHHHHHHH
Q 011388 395 VISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD------WSSGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
..+...|.......+.+|.+|++.|++..|+...++..|++++...+.++.+ .+....++++++++++..++.
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T- 494 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT- 494 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-
Confidence 5555667777778999999999999999999999999999999999999988 344566778888777776544
Q ss_pred HhcccCCCCCHHHHHhhh
Q 011388 469 LWVPETKGRSLEEIQFSF 486 (487)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ 486 (487)
+++||+++++++|++++.
T Consensus 495 ~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 495 LLIPETKGKSLEEISNEE 512 (538)
T ss_pred EEeecccccCHHHhcChh
Confidence 556799999999986643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=271.33 Aligned_cols=369 Identities=14% Similarity=0.100 Sum_probs=271.1
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH-----hcCh
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDS 138 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~ 138 (487)
+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSL 110 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcH
Confidence 34456667889999999999999999999999999999999999999999999999998888877766543 5678
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHH
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~ 214 (487)
+.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+ +|++.|++.++..++..
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL 190 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999988765 89999998887777666
Q ss_pred hhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHH
Q 011388 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (487)
Q Consensus 215 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (487)
+..+.+||+++.. .+++ +..++....++.+++++..+..++.......
T Consensus 191 ~~~~~l~~~~~~~---~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (417)
T PRK10489 191 LPLLRLPALPPPP---QPRE----------------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLTM- 238 (417)
T ss_pred HHHHhCCCCCCCC---cccc----------------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHHH-
Confidence 6666777654210 0000 0000111223445555543333322221111
Q ss_pred HhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011388 295 QLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
......+.|.+.++ .|.+... .......++.+++.++.+++.||.++++.+..+.....++.+++...
T Consensus 239 ----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T PRK10489 239 ----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM----- 309 (417)
T ss_pred ----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----
Confidence 22345566777776 6776554 55566778889999999999999877777777766666555544321
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcc
Q 011388 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 450 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~ 450 (487)
...+...+..++.+.+.+ ...+...++..|..|++.|++++|+.+...++|+.++|.+.|++.+ .+..
T Consensus 310 ----------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 310 ----------PMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred ----------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 011122222222222222 1224445788899999999999999999999999999999999999 5666
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHh
Q 011388 451 GTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQF 484 (487)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
..+.+.+++.++.+++.....+++|+++.+|+|+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 7777777777777777778888988888888765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=265.10 Aligned_cols=368 Identities=15% Similarity=0.137 Sum_probs=263.0
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 124 (487)
+++.+...+.+.+..+...++...+.|.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 46677777777888887788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhH
Q 011388 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWR 200 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr 200 (487)
.+++.+.++++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999988899999999999999999999998888888888888887665 899
Q ss_pred HHHHhhhHHHHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcc
Q 011388 201 VLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (487)
Q Consensus 201 ~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (487)
+.|++.++..++..+. .+..||+++... + + .+.++...+++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----------------------------~~~~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRVG---E-K----------------------------LSLKELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccc---c-c----------------------------ccHHHHHHHHHHHHcCc
Confidence 9999877766665443 345676542100 0 0 00001122345566666
Q ss_pred cchhHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 011388 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (487)
..+.......+.... ......+.|.++. +.+.++.+ .......++.+++.++.+++.||+++|+.+..+.+..
T Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 216 RFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 544433333222221 1223334555543 45776554 3344456678889999999999999999988887777
Q ss_pred HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHH
Q 011388 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 436 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 436 (487)
.++..++......... ..+.......+.+.+.+... +....... ..++++++++.++++....++..+
T Consensus 292 ~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g~g~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 359 (406)
T PRK15402 292 VAGLLLAALATVISSH----------AYLWLTAGLSLYAFGIGLAN-AGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTV 359 (406)
T ss_pred HHHHHHHHHHHHcccc----------cHHHHHHHHHHHHHHHHHHh-hhHHHHHh-hhccccccHHHHHHHHHHHHHHHH
Confidence 7666666553211110 11222333333333333222 22223333 234478999999999999999999
Q ss_pred HHHHhhhHhhhhcchhhHHHHHHH
Q 011388 437 VTMTANFLLDWSSGGTFLIYGIVC 460 (487)
Q Consensus 437 ~~~~~g~~~~~~~~~~~~~~~~~~ 460 (487)
|+.+.+.+.+......+....+++
T Consensus 360 g~~~~~~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK15402 360 GIELSKHAYLGGGNGLFNLFNLAN 383 (406)
T ss_pred HHHHHHhcccCCchHHHHHHHHHH
Confidence 999999998844444443334333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=264.80 Aligned_cols=346 Identities=16% Similarity=0.147 Sum_probs=242.3
Q ss_pred ccccccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH---H-----
Q 011388 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F----- 134 (487)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~----- 134 (487)
+..+...|.+|. +.+|+|.|..++|++.+++.+++.++++++|+++||+||||++..+.+...++.+... +
T Consensus 29 ~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 108 (392)
T PRK12382 29 MTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA 108 (392)
T ss_pred HHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 455677788886 6789999999999999999999999999999999999999999999888777654332 2
Q ss_pred hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
.+|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+ |||+.+.+..+..
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP 188 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999888765 8998777655443
Q ss_pred HHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHH
Q 011388 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (487)
Q Consensus 211 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (487)
++........||.++ ++ +++++.++..+.+++. .....+
T Consensus 189 ~~~~~~~~~~~~~~~------~~-----------------------------~~~~~~~~~~~~~~~~------~~~~~l 227 (392)
T PRK12382 189 LLAWAFNGTVRKVPA------HA-----------------------------GERPSLWSVVGLIWKP------GLGLAL 227 (392)
T ss_pred HHHHHHHHhccCCCC------Cc-----------------------------ccCchHHHHHHHHHHh------HHHHHH
Confidence 333322222333211 00 0000000011111111 111111
Q ss_pred HHHHHhhchhhHHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011388 291 LVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (487)
.. ........+.+.++++.+.+..........++.++++++.|++.||+++|+.+..+..+..++.+++... .
T Consensus 228 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~ 300 (392)
T PRK12382 228 QG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---P 300 (392)
T ss_pred HH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---c
Confidence 11 1123345566667777676555555556677788999999999999999998888777766666554431 1
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhc
Q 011388 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSS 449 (487)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~ 449 (487)
..+.......+.+.+.+. ..+.......|..|+++|+++.|+.+....+|+.++|.+.|.+.| .++
T Consensus 301 ------------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~ 367 (392)
T PRK12382 301 ------------TAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY 367 (392)
T ss_pred ------------cHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 112222233333333322 234444677788999999999999999999999999999999999 566
Q ss_pred chhhHHHHHHHHHHHHHHHHh
Q 011388 450 GGTFLIYGIVCAFTVAFVSLW 470 (487)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~ 470 (487)
...+.+.+++.++..++....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 667777777666666555444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=262.10 Aligned_cols=355 Identities=15% Similarity=0.137 Sum_probs=244.5
Q ss_pred hhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc
Q 011388 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (487)
Q Consensus 57 l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (487)
+..+..++......+.+|.+++|+|.+.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~ 89 (382)
T PRK10091 10 LGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS 89 (382)
T ss_pred HHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444556667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~ 212 (487)
|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+ +||+.|++.++..++
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~ 169 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIA 169 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHH
Confidence 9999999999999999998898899999999999999999999999999999998887665 899999998876655
Q ss_pred HHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHH
Q 011388 213 LIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (487)
Q Consensus 213 ~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (487)
..+ ..+.+||.++ +.+. +.+..+ +.++++..+.......
T Consensus 170 ~~~~~~~~lp~~~~----~~~~---------------------------------~~~~~~-~~~~~~~~~~~~~~~~-- 209 (382)
T PRK10091 170 VLASIYFWVPDIRD----EAKG---------------------------------GLREQF-HFLRSPAPWLIFAATM-- 209 (382)
T ss_pred HHHHHHHhCCCCCc----cccc---------------------------------CHHHHH-HHhcChHHHHHHHHHH--
Confidence 543 3445777532 0000 000011 1223332222221111
Q ss_pred HHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 011388 292 VLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
. ..........|.+.+++ ..|.++.. .......++.++++++.+++.||+++|+.+..+..+..++.+++.....
T Consensus 210 -~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (382)
T PRK10091 210 -F-GNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG 287 (382)
T ss_pred -H-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11112222234444444 45776655 5566778889999999999999999999888877776666554432210
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--
Q 011388 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-- 446 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-- 446 (487)
..+.......+...+......+.......+..|++.++.+ ..+....+|+++||.+.|++.|
T Consensus 288 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~ 351 (382)
T PRK10091 288 --------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG 351 (382)
T ss_pred --------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc
Confidence 1112222222222322222222222344444555555544 3467789999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHH
Q 011388 447 WSSGGTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.++...+.+.++++.+.......
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 352 LAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred cCcchHHHHHHHHHHHHHHHHHH
Confidence 34545555555444444443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=267.17 Aligned_cols=377 Identities=19% Similarity=0.199 Sum_probs=261.7
Q ss_pred hhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHH
Q 011388 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (487)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~ 126 (487)
+.+.....+.+..+..+++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555666667777778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 011388 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (487)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~ 202 (487)
++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765 89999
Q ss_pred HHhhhHHHH-HHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccc
Q 011388 203 AVLGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (487)
Q Consensus 203 f~~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (487)
|++.++..+ ...+...++||++++..++ +.++..+..++..........+ +.+ +.+.+++..+...+.+++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALP-EQKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccc-ccccccchhhHHHHHHhcchhH
Confidence 888764444 4455566789888765444 2333222222221111000000 000 0000011111222333333332
Q ss_pred hhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
+... ......+...........+.|.+.++.+.+... .......++.+++.++.+++.||+++|+... ......+.
T Consensus 250 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 327 (398)
T TIGR00895 250 RITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVF 327 (398)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHH
Confidence 2222 222222233333455667778777777877554 5566678889999999999999999984433 33333332
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
..++... .. ..+......++.+.+.+ ...+...++..|.+|++.|+++.|+.+....+|..++|.
T Consensus 328 ~~~~~~~--~~------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~ 392 (398)
T TIGR00895 328 AVLVGST--LF------------SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI 392 (398)
T ss_pred HHHHHHH--hh------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 11 11122223333333333 234556689999999999999999999999999999999
Q ss_pred HhhhH
Q 011388 440 TANFL 444 (487)
Q Consensus 440 ~~g~~ 444 (487)
+.|++
T Consensus 393 ~~G~l 397 (398)
T TIGR00895 393 LAGYL 397 (398)
T ss_pred hHHhc
Confidence 99875
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=267.89 Aligned_cols=357 Identities=13% Similarity=0.112 Sum_probs=228.6
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
++.....+.+|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.+++
T Consensus 50 ~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 129 (476)
T PLN00028 50 VSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIA 129 (476)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh----h---------hhhhHHHHHhhhHHH
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----L---------FVNWRVLAVLGVLPC 210 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~----~---------~~~wr~~f~~~~~~~ 210 (487)
+|+++|++.+... ....++.|++|+++|++++++.+...++|..+++.+. . ..|||+.|++.+++.
T Consensus 130 ~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~ 208 (476)
T PLN00028 130 VRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLH 208 (476)
T ss_pred HHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Confidence 9999999987654 4567889999999999999998766666665554333 2 137999999988777
Q ss_pred HHHHhhhhccC-CChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHH
Q 011388 211 TLLIPGLFFIP-ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (487)
Q Consensus 211 ~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (487)
++..+..++++ +.|+. +.++. +++.+.++......+++.++++..+...+..+
T Consensus 209 l~~~l~~~~~~~~~p~~-----~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (476)
T PLN00028 209 IIMGILVLTLGQDLPDG-----NYREL---------------------KKSGTMPKDSFSKVLRYGVTNYRTWILALTYG 262 (476)
T ss_pred HHHHHHHHHHcCcCCCC-----chhhH---------------------HhcCccccccHHHHHHHHHcCchhHHHHHHHH
Confidence 66655444444 33320 00000 00000000111123444555555333332222
Q ss_pred HHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchH-------HHHHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL-------LLLISSSGMAAS 359 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~~~~~~~ 359 (487)
...........+.|.++.+ .|++... ....+..++.++++++.|+++||++||+ .......+..+.
T Consensus 263 ----~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~ 338 (476)
T PLN00028 263 ----YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVF 338 (476)
T ss_pred ----HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 2222223345566666654 4877554 5566678899999999999999998652 111111111111
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
.+++.. . .........+.++..+.... .+..+++..+.. ++.++++.|+.+..+.+|++++|.
T Consensus 339 ~~~~~~----~-----------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~ 401 (476)
T PLN00028 339 CIWLGR----A-----------NSLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQL 401 (476)
T ss_pred HHHhcc----c-----------chHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHH
Confidence 111111 0 00111122222222222111 222335556654 468999999998888888888887
Q ss_pred HhhhHhh-hhcchhhHHHHHHHHHHHHHHHH
Q 011388 440 TANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 440 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+.+. .+ .++...+.+.+++.+++.++.++
T Consensus 402 l~~~-~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 402 LFFT-GSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHh-cCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 7652 22 34556677777666666554433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=267.87 Aligned_cols=414 Identities=19% Similarity=0.200 Sum_probs=295.2
Q ss_pred chhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhH
Q 011388 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (487)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~ 125 (487)
+.++......+.............++..+ .+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~ 158 (521)
T KOG0255|consen 81 WKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLF 158 (521)
T ss_pred ccccccccccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHH
Confidence 33343444444444444444455555444 4566778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh--hhHHHH
Q 011388 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLA 203 (487)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--~wr~~f 203 (487)
.++.+++++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......++.+++..++++ +||+.+
T Consensus 159 ~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~ 237 (521)
T KOG0255|consen 159 IIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLF 237 (521)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 666666777777666666 899999
Q ss_pred HhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCCh---hhhHHHHHH--HHHhhhccchhhhhHHHHhhc
Q 011388 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDT---DISIEVNEI--KRSVASSSRRTAIRFAELKRK 278 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 278 (487)
++..++.++.++.+++.||+|||+..+++.+++.+.++++.+.+. ......... .........+++..+.++++.
T Consensus 238 ~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (521)
T KOG0255|consen 238 WIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRT 317 (521)
T ss_pred HHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcC
Confidence 999999988877777778999999999999999999999876541 111111111 111111122233457777777
Q ss_pred ccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 011388 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 357 (487)
+..+...+...+.++... ..++...+. ..+++... ......+.....+....+...|+.|||.....+.....
T Consensus 318 ~~l~~~~~~~~~~~~~~~-----~~y~gl~~~-~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~ 391 (521)
T KOG0255|consen 318 PRLRYRTLYLLFIWFVFS-----LVYYGLSLN-VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAG 391 (521)
T ss_pred HHHHHHHHHHHHHHHHHh-----HHHHhhhhh-hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 654444444444443222 222222211 11222222 44455555777788888899999999999999998888
Q ss_pred HHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHH
Q 011388 358 ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 437 (487)
++++..++...... . +.......+...+.+.++... +.+..|++|+..|..+.+..+....++++++
T Consensus 392 ~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~a 458 (521)
T KOG0255|consen 392 IGLLLFGWLPDDLG-----------G-WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILA 458 (521)
T ss_pred HHHHHHHHhhccch-----------h-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876532221 0 111222222222223333333 6899999999999999999999999999999
Q ss_pred HHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011388 438 TMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 481 (487)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
|.+.-..........+.+++....+...+...++||++++.+.+
T Consensus 459 p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 459 PLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 99986655533333333356677777777778899999887543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=262.04 Aligned_cols=358 Identities=11% Similarity=0.073 Sum_probs=252.0
Q ss_pred HHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHH
Q 011388 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (487)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~ 131 (487)
...++++.+..+.+....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l 88 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAG 88 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445556666777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhh
Q 011388 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLG 206 (487)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~ 206 (487)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++..+...++|..++|.+.+.+ +||+.|.+.
T Consensus 89 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~ 168 (394)
T PRK03699 89 LMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI 168 (394)
T ss_pred HHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888888888776543 899999987
Q ss_pred hHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHH
Q 011388 207 VLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (487)
++..++..+..++ ++.|+. +++++ +++++.. ++ .+.+.++
T Consensus 169 ~~~~~~~~~~~~~-~~~p~~--~~~~~----------------------------~~~~~~~----~~-----~~~~~~~ 208 (394)
T PRK03699 169 GLVYVAIFILTLF-SEFPAL--GKHAP----------------------------KADKPVA----KE-----KWGIGVL 208 (394)
T ss_pred HHHHHHHHHHHHh-cCCccc--cccCc----------------------------cccCccc----cc-----cCChHHH
Confidence 7766555443332 222210 00000 0000000 00 0111122
Q ss_pred HHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 011388 287 GIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
...+..++.......+..|.|.++++ .|++..+ .......++..+++++.+++.||+++|+.+........+...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 22222233333345567788888855 5877655 55566678889999999999999999998877665554443333
Q ss_pred HHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhh
Q 011388 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 443 (487)
... .+ ........+..+.+. .+..+...++..|..|. .++...+......++|+.++|.+.|+
T Consensus 289 ~~~---~~------------~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~ 351 (394)
T PRK03699 289 VNT---DD------------PSHLLYAILGLGFFS-SAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSP 351 (394)
T ss_pred HHc---CC------------chHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 211 10 111122222222222 22334444566666654 45778888889999999999999999
Q ss_pred Hhh-hhcchhhHHHHHHHHHHHHH
Q 011388 444 LLD-WSSGGTFLIYGIVCAFTVAF 466 (487)
Q Consensus 444 ~~~-~~~~~~~~~~~~~~~~~~~~ 466 (487)
+.| .+....++..+++.+++.+.
T Consensus 352 l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 352 IVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHH
Confidence 998 56666666666665555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=253.43 Aligned_cols=345 Identities=14% Similarity=0.071 Sum_probs=246.0
Q ss_pred hhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc
Q 011388 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (487)
Q Consensus 57 l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (487)
++.+..+...+...+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~ 92 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV 92 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455567778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~ 213 (487)
|++.++++|+++|++.+...+...+.+.+..++++|++++++...+.++|..+|+.+++.+ .++...+..+......
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAI 172 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 9999999999999999999998888888999999999999999999999999999998876 1222222222222111
Q ss_pred H-hhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 214 I-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 214 ~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
+ +.....+++++ + + ++..+.++.++++.++..........
T Consensus 173 ~~~~~~~~~~~~~------------------------------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (381)
T PRK03633 173 LPLLFTRILNQQA------------------------------------E--N-HDSTSIWPMLKLRQARLGVNGCIISG 213 (381)
T ss_pred HHHHHhcccCCCC------------------------------------C--C-CCCCCHHHHHHhcchHHHHHHHHHHH
Confidence 1 11111222100 0 0 01123344556655443222222211
Q ss_pred HHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011388 293 LQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (487)
. .......+.|.+.++.|.+... .......++.+++++..+++.||+++|+.+..+.....++...+..
T Consensus 214 ~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~----- 284 (381)
T PRK03633 214 I----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS----- 284 (381)
T ss_pred H----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-----
Confidence 1 1223445678888777876554 4555667888999999999999999999888776666655443320
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhc
Q 011388 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSS 449 (487)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~ 449 (487)
. . .......+.+.+ .....|.......|..|+++++.+.+..+...++|+.++|.+.|++.| .+.
T Consensus 285 -~---------~---~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 285 -Q---------A---AMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred -h---------H---HHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 0 0 011111222222 223446666778898998888888888888999999999999999998 555
Q ss_pred chhhHHHHHHHHHH
Q 011388 450 GGTFLIYGIVCAFT 463 (487)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (487)
...+.+.+.+.++.
T Consensus 351 ~~~f~~~~~~~l~~ 364 (381)
T PRK03633 351 NLLFIMIASVSFIY 364 (381)
T ss_pred cHHHHHHHHHHHHH
Confidence 55566655555444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=264.31 Aligned_cols=397 Identities=13% Similarity=0.126 Sum_probs=257.5
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
+.......+.......+...+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 333444444555555666666667787776 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh-----hhh
Q 011388 129 WLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNW 199 (487)
Q Consensus 129 ~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~-----~~w 199 (487)
.+++++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+... .+|
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 9888765 4677888999999999999999999999999999999999999999999999888766543 289
Q ss_pred HHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhc
Q 011388 200 RVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (487)
Q Consensus 200 r~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (487)
|+.|++.++..++. ++..+++||+|+....++. ++. .++..+ + ..++.+.+.+.++...+.++++
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 250 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEY-------RNDYPD---D---YNEKAEQELTAKEIFMQYVLPN 250 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhc-------cccccc---c---cccccccccchHHHHHHHHccC
Confidence 99999987776664 4555667887753211100 000 000000 0 0000000000111111235555
Q ss_pred ccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 011388 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 355 (487)
+..+.......+.. ...+....|.|.++++ .|.+... ....+..+.++++.++.|++.||+++++....+...
T Consensus 251 ~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~ 326 (438)
T TIGR00712 251 KLLWYIAIANVFVY----LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF 326 (438)
T ss_pred chHHHHHHHHHHHH----HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence 55444333322222 2234566788888876 4766544 556667788999999999999999643322222222
Q ss_pred HHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHH-
Q 011388 356 MAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVS- 434 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~- 434 (487)
..+......... .... . ..+.........+.+. .+..........|.+|++.|+++.|+.+...++|+
T Consensus 327 ~~~~~~~~~~~~-~~~~---~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~ 395 (438)
T TIGR00712 327 MTLVTIAVIVYW-MNPA---G------NPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 395 (438)
T ss_pred HHHHHHHHHHHH-hcCC---C------chHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhh
Confidence 211111111110 0000 0 0111111122222111 12111222456789999999999999999988875
Q ss_pred HHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 435 WIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 435 ~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+++|.+.|.+.| .++...+.+..++.+++.+.....++|.|
T Consensus 396 ~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 396 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999 56666777777777777777777777655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.23 Aligned_cols=391 Identities=13% Similarity=0.083 Sum_probs=262.0
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHh----------------------hcCCChhhHHHHHHHHHHHHHHHH
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIIS----------------------DLKLTISEFSIFGSLANVGAMVGA 102 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~~~~~~~~ 102 (487)
.+.++.+..+++++......++..++...+.+.+ |++++..+.|++.+++.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 3455666666677777777888888888777766 889999999999999999999999
Q ss_pred HHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh--cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHH
Q 011388 103 IASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (487)
Q Consensus 103 ~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 180 (487)
++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887554 678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhhhh-ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHH
Q 011388 181 LSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (487)
Q Consensus 181 ~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
.+..+|.++++++++.+ +||+.|++.++..++..+.++ +.+|+|+...+. +++|. +..+
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~-~~i~------------- 238 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEK-KYIN------------- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHH-HHHH-------------
Confidence 99999999999887654 799999998887776655444 456766421111 11110 0000
Q ss_pred HHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHH
Q 011388 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVV 331 (487)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~ 331 (487)
+. ...++++.+.+.+++++++++..+ ...+..++.....+.+..|.|.++++ .|.+... ....+..++..+
T Consensus 239 -~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i 312 (465)
T TIGR00894 239 -SS-LQGQKGSTRQSLPIKAIPKSLPVW----AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWL 312 (465)
T ss_pred -hh-cccccCCCCCCCCHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHH
Confidence 00 000011111233577777766543 33333444444456777888888865 4776554 556667888999
Q ss_pred HHhHHHHHhhhccchHHHH---HHHHHHHHHH---HHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccc
Q 011388 332 ATGVNTWLMDKAGRRLLLL---ISSSGMAASF---FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAI 405 (487)
Q Consensus 332 ~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (487)
+.++.|+++||+++|+... ...+...++. ....+....... .....+..+.+ ..+...+..+.
T Consensus 313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l-~~~~~~~~~~~ 381 (465)
T TIGR00894 313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA----------AFYLTIIILTL-ANAVSSGPLAG 381 (465)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------chHHHHHHHHH-HHHHhhhhhhh
Confidence 9999999999976442110 0011111111 111111110000 11112222222 22222222233
Q ss_pred hhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh---h-cchhhHHHHHHHHHHHHHHH
Q 011388 406 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW---S-SGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~---~-~~~~~~~~~~~~~~~~~~~~ 468 (487)
......|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+. + +...+.+.+++.+++.++..
T Consensus 382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 33455566665 799999999999999999999999998763 2 33455566655555554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=252.10 Aligned_cols=336 Identities=18% Similarity=0.185 Sum_probs=242.8
Q ss_pred ccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHH
Q 011388 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (487)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (487)
.......+.|.+|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHh-h
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-G 216 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~-~ 216 (487)
++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++..+ .
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888765 899999887766655543 3
Q ss_pred hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHh
Q 011388 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (487)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (487)
.+..||+++.. ++ ++.++.....++.++++..+...+.......
T Consensus 177 ~~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (385)
T TIGR00710 177 FFILPETLPYE----AR-----------------------------IQISTYFETFLLLLKSKMFWGYALIYGASFG--- 220 (385)
T ss_pred HHhCCCCCCCc----cc-----------------------------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHH---
Confidence 44567654210 00 0000112234455666655444333322222
Q ss_pred hchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011388 297 SGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
.......+.|.+++ +.|.++.. .......++.+++.++.+++.||+++|+.+..+.....++..++.........
T Consensus 221 -~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (385)
T TIGR00710 221 -GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG- 298 (385)
T ss_pred -HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 22334445566555 45776555 55566678889999999999999999998887776666665555443211100
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
..........+.+.+.+. ..+.......|..| +.++++.++.+.....++.+.+.+.+...+
T Consensus 299 ---------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 299 ---------SWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred ---------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011112222222222222 23444567777776 568999999999888777777777774443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=250.57 Aligned_cols=369 Identities=16% Similarity=0.161 Sum_probs=251.2
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
......+.+..+...++...+.|.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 33444445555666678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q 011388 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (487)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~ 204 (487)
++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||.+++.+ +||+.|+
T Consensus 95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999877777888999999999999999999999999999999888765 8999999
Q ss_pred hhhHHHHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchh
Q 011388 205 LGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (487)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (487)
+.++..++..+. ++.+||+++. ++ ++ .+.+....+++.+++++..+.
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~-~~----------------------------~~~~~~~~~~~~ll~~~~~~~ 222 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GA-VP----------------------------FSAKSVLRDFRNVFRNRLFLT 222 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cC-CC----------------------------CChHHHHHHHHHHHcCHHHHH
Confidence 988776666544 4557886430 00 00 000111234556677766554
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (487)
..+...+... .......+.|.++++. |.++.. +.......+.+++..+.+.+.++..+++..........++.
T Consensus 223 ~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 223 GAATLSLSYI----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHH----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 4333332222 2334445667777664 776665 44444566777777777776655444444333333333333
Q ss_pred HHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 011388 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
.++......... ..+.......++..+.+... |......-+ -....+|++.++.+.....+..+++..
T Consensus 299 ~l~~~~~~~~~~----------~~~~~~~~~~l~~~G~~~~~-p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~ 366 (413)
T PRK15403 299 ALLIVGNLLWPH----------VWLWSVLGTSLYAFGIGLIF-PTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEI 366 (413)
T ss_pred HHHHHHHHHccc----------cHHHHHHHHHHHHHHHHHHh-HHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 333322111100 11112233333333333322 222222211 122247999999999999999999999
Q ss_pred hhhHhhhhcchhhHHHHHHHHHHHH
Q 011388 441 ANFLLDWSSGGTFLIYGIVCAFTVA 465 (487)
Q Consensus 441 ~g~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
.+++.+.+....+...+.++.+...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 367 GRWLWFNGGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHH
Confidence 9998887666666666555544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=269.22 Aligned_cols=376 Identities=17% Similarity=0.191 Sum_probs=263.7
Q ss_pred HHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHH
Q 011388 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (487)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~ 131 (487)
...++++.+...++....++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44555666777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhh
Q 011388 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (487)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~ 207 (487)
+++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988776 8999999887
Q ss_pred HHHHHHHh-hhhccCCChHHHHhcCChHHHHHHH--------H-HH-hCCChhh--hHHHH-H---------HHHHhhhc
Q 011388 208 LPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSL--------Q-VL-RGFDTDI--SIEVN-E---------IKRSVASS 264 (487)
Q Consensus 208 ~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~--------~-~~-~~~~~~~--~~~~~-~---------~~~~~~~~ 264 (487)
+..++..+ ..+.+||+++. ++++.+.....+ . .. .+...+. ..... . .....+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 76665544 34446664331 111111111000 0 00 0100000 00000 0 00000111
Q ss_pred cchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhh
Q 011388 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 341 (487)
+ +++....++++++.++...+..++..+ .......+.|.++++ .|+++.+ ....+..++.+++.++.|++.|
T Consensus 242 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 242 D-DNPLVDLRLFKYRNFTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred C-CCCccCHHHHcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111122345666665544333333332 234455667777765 4776655 5566678889999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhh
Q 011388 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL 421 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (487)
|++||+.+..+....+++...+...... +.+ .+.......+.+.+.+....+.. ....+..|++++++
T Consensus 317 r~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~ 384 (485)
T TIGR00711 317 KIDPRKLVTIGLILYAVGFYWRAFTFTP------DTP-----FLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIAR 384 (485)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhccCCC------CCC-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhH
Confidence 9999999888877776666555421100 000 11122222333333332222333 55567789999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 422 AGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 422 ~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
+.|+.+..+.+|+.+++.+.+.+.+
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=258.86 Aligned_cols=370 Identities=16% Similarity=0.141 Sum_probs=255.4
Q ss_pred hhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh
Q 011388 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (487)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~ 135 (487)
+++.+...++...+.+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 95 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS 95 (471)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHH
Q 011388 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (487)
Q Consensus 136 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~ 211 (487)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +||+.|++......
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988766 89999998877665
Q ss_pred HHHhhh-hccCCChHHHHhcCChHHHHHHHH--------H-HhCCChh--hhHHHHH----------HHHHhhhccchhh
Q 011388 212 LLIPGL-FFIPESPRWLAKMGMTEDFESSLQ--------V-LRGFDTD--ISIEVNE----------IKRSVASSSRRTA 269 (487)
Q Consensus 212 ~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~--------~-~~~~~~~--~~~~~~~----------~~~~~~~~~~~~~ 269 (487)
+..+.. ...|+.+. ++.+.+....... . ..+.... ....... .....++..+++.
T Consensus 176 l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (471)
T PRK10504 176 IGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRAL 252 (471)
T ss_pred HHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 554333 34454331 1111111111000 0 0010000 0000000 0000011111112
Q ss_pred hhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch
Q 011388 270 IRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (487)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (487)
.+. ++++++.+.......++... .......+.|++++. .|.++.. .......++.+++.++.+++.||+++|
T Consensus 253 ~~~-~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~ 327 (471)
T PRK10504 253 FSL-KLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR 327 (471)
T ss_pred cCH-HHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 222 46777765554444333332 233445566777764 5776554 455556677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 347 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
+.+..+..+..+...++...... ...+.......+.+.+.+... +....+..+..|++.++.+.|+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 328 RVLVATTLGLALVSLLFMLVALL------------GWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHH
Confidence 99888877666665554432100 001111122222223332222 33447777889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhh
Q 011388 427 TLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 427 ~~~~~~g~~i~~~~~g~~~~ 446 (487)
++...+|..+++.+.|.+.+
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=253.51 Aligned_cols=340 Identities=11% Similarity=0.027 Sum_probs=250.3
Q ss_pred ccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc---
Q 011388 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--- 136 (487)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--- 136 (487)
+...+..+...+.+|.+..+++.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG 88 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33345566777889999999999999999999999999999999999999999999999999999999999888887
Q ss_pred --ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 137 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
|++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+ +||+.|++.++..
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 168 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGF 168 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776 8999998877766
Q ss_pred HHHHhhhhcc--CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHH
Q 011388 211 TLLIPGLFFI--PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (487)
Q Consensus 211 ~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (487)
++..+..+.+ ||.++. ++++. + + +..++.....+.+++++..+......
T Consensus 169 ~~~~~~~~~~~~~~~~~~-----~~~~~--------------~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T TIGR00900 169 AISALLIVSVRIPELAAS-----EIQAL--------------S---N-------AVLRDTREGIKFVLKNPLLRTLLLLA 219 (365)
T ss_pred HHHHHHHHhcccccCCCc-----ccccc--------------c---h-------hHHHHHHhHHHHHHcCcHHHHHHHHH
Confidence 6554444333 332110 00000 0 0 00011122345566666555444333
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 011388 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
.+..... ......+.|.+.++ .+.+... .......++.+++.++.+++.||.+||+.+..+.....++...+..
T Consensus 220 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (365)
T TIGR00900 220 LLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGL 296 (365)
T ss_pred HHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Confidence 3332221 11222556666665 5666554 5566677888999999999999999999888776666555555443
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
... ..+...+..++.+.+.+ ...+...++..|..|++.|+++.|+.+...++++.++|.+.|.+.
T Consensus 297 ~~~--------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 297 TPP--------------NFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred hch--------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210 01222333333333333 234556688999999999999999999999999999999999988
Q ss_pred h
Q 011388 446 D 446 (487)
Q Consensus 446 ~ 446 (487)
|
T Consensus 362 ~ 362 (365)
T TIGR00900 362 D 362 (365)
T ss_pred H
Confidence 7
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=260.53 Aligned_cols=358 Identities=15% Similarity=0.124 Sum_probs=244.2
Q ss_pred cccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcCh
Q 011388 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138 (487)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~ 138 (487)
++...++...+++..|.+.+++|.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 34455777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHH-hhhhh----hhHHHHHhhhHHHHHH
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-LGLFV----NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-l~~~~----~wr~~f~~~~~~~~~~ 213 (487)
+.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++. ++..+ +||+.|++.++..++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999983 44433 8999998877665554
Q ss_pred -HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 214 -IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 214 -~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
++..++.||+|+....++++++.. + +.++.++..+++.+..+...+++++++..+...+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMPN-----------E---EPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY 229 (379)
T ss_pred HHHHheeeCCCccccccCccccCcc-----------c---ccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence 445556777654211111000000 0 0000000001111122234455666665444333333322
Q ss_pred HHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 011388 293 LQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFF 368 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
. .......+.|.++++ .|.+..+ .......++.+++.++.+++.||..+ |+.... ..........+.....
T Consensus 230 ~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 230 V----VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYWL 304 (379)
T ss_pred H----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHhc
Confidence 2 234455666776654 4776554 55666778889999999999998643 332221 1111111111111100
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
... .............+ .+..+..+....+..|..|++.|+++.|+.+....+|+.++|.+.|.+.|
T Consensus 305 ~~~----------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 305 NPA----------ANPLMDLICLFALG-FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred Ccc----------hhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 000 01111222222222 22233334445778899999999999999999999999999999999998
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.41 Aligned_cols=384 Identities=13% Similarity=0.065 Sum_probs=248.4
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
|.++..+.+...........++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 97 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLG 97 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHH
Confidence 44444444443333334455677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHH-HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q 011388 129 WLIISFSKDSSFLFM-GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (487)
Q Consensus 129 ~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f 203 (487)
+++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.|
T Consensus 98 ~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f 176 (455)
T TIGR00892 98 MILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSF 176 (455)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHH
Confidence 999999999998875 5799999998877777888899996 7899999999999999999998887765 899999
Q ss_pred HhhhHHHHHHHhhhhcc-CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccch
Q 011388 204 VLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (487)
++.++..++..+..+++ ++.+.....+.+.++ ...+.. ..+ +.+..... ++..+....++++++.++
T Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 244 (455)
T TIGR00892 177 LILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE------GLPPDG-STK----KLSKKSTA-EKINRFLDFSLFTHRGFL 244 (455)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccccccc------cCCCCC-ccc----cccccchh-hhhhhhcchHHhcCchHH
Confidence 99887766554444333 322210000000000 000000 000 00000000 000001011355555544
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc--cchHHHHHHH--HHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLISS--SGM 356 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~--~~~ 356 (487)
......++.. ........+.+.+.++.|++... ......+++.++++++.+++.||. ++|+...... +..
T Consensus 245 ~~~~~~~l~~----~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 245 VYLSGNVIMF----LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred HHHHHHHHHH----HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 3333322222 22334455677777777887555 556667788889999999999973 3343333322 222
Q ss_pred HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHH
Q 011388 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 436 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 436 (487)
.++.++.... . ..+.......+.+.+++ ...+...++..|.+|+++++++.|+++....+|+++
T Consensus 321 ~l~~ll~~~~---~------------~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 384 (455)
T TIGR00892 321 GLTHLLCALA---G------------DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI 384 (455)
T ss_pred HHHHHHHHHh---c------------hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc
Confidence 2222222111 0 11222233333333332 333455678889999999999999999999999999
Q ss_pred HHHHhhhHhh-h-hcchhhHHHHHHHHHHHH
Q 011388 437 VTMTANFLLD-W-SSGGTFLIYGIVCAFTVA 465 (487)
Q Consensus 437 ~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~ 465 (487)
+|.++|.+.| . ++...+.+.+++.+++.+
T Consensus 385 gp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 385 GPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred cccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999988 4 355566666655554433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=248.86 Aligned_cols=332 Identities=17% Similarity=0.151 Sum_probs=239.9
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
+..+.+.|.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhc
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~ 219 (487)
.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888889999999999999999998888888888888887765 8999999887777666555555
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhch
Q 011388 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (487)
Q Consensus 220 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (487)
++|+++. + + +++++.+++++++++..+...+...... ...
T Consensus 180 ~~~~~~~---~--~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 219 (401)
T PRK11043 180 LKPSKKA---R--K-------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACS----AAF 219 (401)
T ss_pred cCCCCCc---c--c-------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHH----HHH
Confidence 5554320 0 0 0011223455566555433332222211 122
Q ss_pred hhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
.....+.|.+.++.|++... .......++.+++.++.+++.||+++|+..........++...+.........
T Consensus 220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 294 (401)
T PRK11043 220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP----- 294 (401)
T ss_pred HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 33445677777777887655 44455567788899999999999999887666555544444333322111110
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
..+.......+.+.+.+ ...+.......|..| ++++++.|+.+.....++..++.+.|.+.+.
T Consensus 295 -----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 295 -----SLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred -----cHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 11112222222233332 233444455566666 4699999999999999999999999998873
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=252.34 Aligned_cols=371 Identities=16% Similarity=0.091 Sum_probs=258.1
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 124 (487)
....+..++++++...++..|...+..+.+.+++.+|++++..|++++.+.+.+.+++|+.|+++|||.||+++.+|.++
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34455667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hh
Q 011388 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NW 199 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w 199 (487)
|.++.+++++++.+|+++++|.+.|+|.+...|+.+++++|.+|.++|++++++++.+..+|..+|.+.+..+ .|
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888766 49
Q ss_pred HHHHHhhhHHHHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhc
Q 011388 200 RVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (487)
Q Consensus 200 r~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (487)
||.|+..++++++..++ .++++|++|- .+++.. + +.....+.....++.+.+.++
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~------------~~~~~~~~ts~~kDl~~l~~~ 243 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------G------------ENKMVKPFTSVWKDLKVLAKI 243 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------c------------CCcCCCCccchHHHHHHHHcc
Confidence 99999999888887554 4556665321 111100 0 000011122233444555555
Q ss_pred ccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHH
Q 011388 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR----LLLLIS 352 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~~ 352 (487)
+......+.+....+.....-+..+.+.++..+-.+.+... ....+...++.+|.+.+|.++||+.|+ ......
T Consensus 244 ~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~ 323 (493)
T KOG1330|consen 244 KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRAS 323 (493)
T ss_pred CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHH
Confidence 55554455555555544444444445555544444544333 666777888999999999999995321 112222
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHH-H
Q 011388 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLAN-W 431 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~ 431 (487)
.+.++.+............. .........+.+++++............-+..|.+|++.|.++.++-..+. .
T Consensus 324 q~~~~~g~~~s~~~L~~~~~-------~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~ 396 (493)
T KOG1330|consen 324 QLSAALGAPLSIPFLFLFPA-------FTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHI 396 (493)
T ss_pred HHHHhhhhhHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHH
Confidence 22222111111111110000 001112222333333333333333444477888999999999999986555 4
Q ss_pred HHHHHHHHHhhhHhh
Q 011388 432 LVSWIVTMTANFLLD 446 (487)
Q Consensus 432 ~g~~i~~~~~g~~~~ 446 (487)
+|.+-+|++.|.+.|
T Consensus 397 fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 397 FGDAASPYIVGILSD 411 (493)
T ss_pred hccCCCcceehhHHH
Confidence 566666779999988
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=247.41 Aligned_cols=356 Identities=14% Similarity=0.057 Sum_probs=237.7
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
+....+....+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++.+..++++++++++++++. ++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~ 93 (393)
T PRK11195 17 LADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LL 93 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HH
Confidence 433444455666789999999999999999999999999999999999999999999999999999988887664 78
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHhhhhcc
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
.|+++|++.+...|+..+++.|++|+++|+++.++.+....+|.++||.+++.+ .|+..+.+.+...++..+..+.+
T Consensus 94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l 173 (393)
T PRK11195 94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFI 173 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999887 45555555554444444555668
Q ss_pred CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchh
Q 011388 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (487)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (487)
||+|+...++ +++..+. .. +.....+.+++++..+...+...+..... .
T Consensus 174 ~~~~~~~~~~--~~~~~~~--------------~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~ 222 (393)
T PRK11195 174 PRLGARRPGQ--SWNPIAL--------------LR-----------DFFHACRVLWRDKLGRFSLAGTTLFWGAG----A 222 (393)
T ss_pred CCCccccccc--CCCHHHH--------------HH-----------HHHHHHHHHHhCchhHHHHHHHHHHHHHH----H
Confidence 8765321100 0000000 00 00112345566665554433332222222 1
Q ss_pred hHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 301 GVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 301 ~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
...+..+.+.++ .|.++.+ ......+++.+++++..+++.||.++++.+..+.. .++....+...
T Consensus 223 ~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~----------- 290 (393)
T PRK11195 223 TLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ----------- 290 (393)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----------
Confidence 222233333332 3666555 56667788899999999999999888877766543 22222222211
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhh-hhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHH
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI-KSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 456 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~ 456 (487)
...+.......+.+.+.+....+ ..+...+..|++. +|++.++.+..++++..++..+.+.+...+-...+.+.
T Consensus 291 ----~~~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (393)
T PRK11195 291 ----HSLLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIV 365 (393)
T ss_pred ----hHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 11122223333333333332333 3466667666554 79999999999999999999999977656655555554
Q ss_pred HHHHHHHHHHHHHh
Q 011388 457 GIVCAFTVAFVSLW 470 (487)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (487)
+...++...+.+.+
T Consensus 366 ~~~~~~~~~~~~~~ 379 (393)
T PRK11195 366 GFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=247.91 Aligned_cols=352 Identities=15% Similarity=0.109 Sum_probs=235.8
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH---H-hcChhHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRL 146 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~ 146 (487)
+.++.+.+|+|.++++.|++.+.+.+++.+++++.|+++||+||||++..+..+++++++++. + .+|++.+++.|+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG 113 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 456667789999999999999999999999999999999999999999999999999877653 3 357888999999
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHH-HHHHHhhhhh----hhHHHHHhhhHHHHHH-Hhhhhcc
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFI 220 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~~----~wr~~f~~~~~~~~~~-~~~~~~~ 220 (487)
++|++.+...+...+.+.+++|+++|++++|+.+++.++|. .++|.+++.+ ||+..++.......+. ++..++.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888889999999999999999999999997 5788877654 7655444433322222 2233334
Q ss_pred CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchh
Q 011388 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (487)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (487)
+|.++.. ++++++ +.++....+++++++|..+...+.. ++......
T Consensus 194 ~~~~~~~-~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 239 (402)
T TIGR00897 194 KDIFTPQ-HMQTRE-----------------------------KFSELGKAATILFTNPNVLLGGMVR----IINTIGLF 239 (402)
T ss_pred CCCCCcc-cccCCc-----------------------------chhhHHHHHHHHHcChhHHHHHHHH----HHHHHHHH
Confidence 4432100 000000 0001112344566666644333322 22223345
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL-ISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
....|.|.+.++.|++..+ .......++..++.+..|+++||++||+.+. .+.+...++...+.........
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~----- 314 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH----- 314 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC-----
Confidence 5677888888888887665 4445667889999999999999999887653 2233333332222221110000
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHH
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 456 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~ 456 (487)
..+.......+.+.+.+ +..+.. ....|..| ++|+++.|+.+....+|+.++|.+.|.+.| .++...+++.
T Consensus 315 -----~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~ 386 (402)
T TIGR00897 315 -----SFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF 386 (402)
T ss_pred -----cHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 11122222223333222 223332 45566554 579999999999999999999999999999 6666777777
Q ss_pred HHHHHHHHHHHHH
Q 011388 457 GIVCAFTVAFVSL 469 (487)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (487)
+++.++..++..+
T Consensus 387 a~~~~i~~~~~~~ 399 (402)
T TIGR00897 387 AALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=249.77 Aligned_cols=358 Identities=13% Similarity=0.035 Sum_probs=247.2
Q ss_pred ccccccccccchhHHHHHhhcCCChhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH
Q 011388 60 IQFGFTCGYSSPTQAEIISDLKLTISE-----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (487)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 134 (487)
+..++......+.+|.+.+++|.+..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 103 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL 103 (408)
T ss_pred HHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 444466677888999999999988654 489999999999999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
.+|++.+++.|++.|++.+ ..+....++.+++|+++|+++.++...+..+|..++|.+++.+ +||+.|++.++..
T Consensus 104 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 182 (408)
T PRK09874 104 AQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL 182 (408)
T ss_pred HhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999865 5677888999999999999999999999999999999888765 8999998887766
Q ss_pred HHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHH
Q 011388 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (487)
Q Consensus 211 ~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (487)
++..+ ..+++||.++.. ++++ +.+..+..+.++++..........
T Consensus 183 ~~~~~~~~~~~~~~~~~~----~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (408)
T PRK09874 183 FLCFLVTLFCIRENFQPV----SKKE------------------------------MLHMREVVTSLKNPKLVLSLFVTT 228 (408)
T ss_pred HHHHHHHHHHhccCcccc----cchh------------------------------hhHHHHHHHhCcCCchHHHHHHHH
Confidence 65544 344466543200 0000 000001112233333222121111
Q ss_pred HHHHHHhhchhhHHhhHHHHHHhcCCCchh------HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (487)
+... ........+.+.+..+.+.+... ......+++.+++.+..|++.||++||+.+..+.....++.+..
T Consensus 229 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 305 (408)
T PRK09874 229 LIIQ---VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPM 305 (408)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 1111 11122333444444443222221 22334466777888899999999999998887776665554443
Q ss_pred HHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhh
Q 011388 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 443 (487)
... . ..+...+...+.+.+.+ ...+...++..+..|++.+++.+++.+....+|..++|.+.|.
T Consensus 306 ~~~---~------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~ 369 (408)
T PRK09874 306 SFV---Q------------TPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAA 369 (408)
T ss_pred HHh---c------------cHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHH
Confidence 321 0 11222222223333322 2334445667778888899999999999999999999999999
Q ss_pred Hhh-hhcchhhHHHHHHHHHHHHHHHHhc
Q 011388 444 LLD-WSSGGTFLIYGIVCAFTVAFVSLWV 471 (487)
Q Consensus 444 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
+.+ .++...+.+.+++.++..++.....
T Consensus 370 l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 370 ISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 988 6676777777777777666555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=245.79 Aligned_cols=351 Identities=13% Similarity=0.146 Sum_probs=238.6
Q ss_pred cccccccccccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh-hhhhHHHHHHHHHHhc
Q 011388 59 PIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFSK 136 (487)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~~~~~~~~~~~ 136 (487)
.+..++..+...|.+|. +++++|.|..+.|++.+++.++..+.+++.|+++||+||||.+.. +..+.+++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 34445666777888886 578899999999999999999999999999999999999887654 6666677888899999
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchh--hHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
|++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|..+++.+++.+ +||+.|++.++..
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988888888888999999887777654 5777778888888888887665 8999999988776
Q ss_pred HHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHH
Q 011388 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (487)
Q Consensus 211 ~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (487)
++..+ .++++||.|++..++ +...+.++.++++.++......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPRGAPGA------------------------------------LTRLEVRGLLASRDTRLLFVACT 209 (375)
T ss_pred HHHHHHHHHhCCCcccCcccc------------------------------------cCcchhhhhhcCcchHHHHHHHH
Confidence 66544 345578876421000 00011222444444443333332
Q ss_pred HHHHHHhhchhhHHhhHHHHH-HhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
+.... ......+.|.++ ++.|.++.. ..........+++.++.+++.||++||+.+..+.....+....+...
T Consensus 210 ~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T TIGR00899 210 LMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD 285 (375)
T ss_pred HHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 22221 122233445554 345776554 33334445667788899999999999998877665544433332211
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
...+.......+.+.+.+. ..+....+..|..|++ ++++.++.+...++|..++|.+.|.+.+
T Consensus 286 ---------------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 286 ---------------NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222222222222 2344557778888764 6799999999999999999999999988
Q ss_pred -hhcchhhHHHHHHHHHHHHH
Q 011388 447 -WSSGGTFLIYGIVCAFTVAF 466 (487)
Q Consensus 447 -~~~~~~~~~~~~~~~~~~~~ 466 (487)
.++...+.+.+++.+++.++
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 349 RWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred hccchhHHHHHHHHHHHHHHH
Confidence 55656666666655555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=253.40 Aligned_cols=338 Identities=22% Similarity=0.289 Sum_probs=244.2
Q ss_pred hcccccccccccchhHH-HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc
Q 011388 58 GPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (487)
Q Consensus 58 ~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (487)
+.+...++.....+.+| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence 33444566677888899 89999999999999999999999999999999999999999999999999999977777778
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~ 212 (487)
|++.++++|++.|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+ +||+.|++.++..++
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 8889999999999999999999999999999999999999999999999999999998877 899999998888777
Q ss_pred HHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhh-hHHHHhhcccchhHHHHHHH
Q 011388 213 LIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI-RFAELKRKRYWFPLMIGIGL 290 (487)
Q Consensus 213 ~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (487)
..++ .++++++|+....+.+.++. ++++++.. .++.+++++..+..+.....
T Consensus 164 ~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 164 AAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp HHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred hhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhhhhhhH
Confidence 7553 34455443211111000000 00011111 24556666655422333222
Q ss_pred HHHHHhhchhhHHhhHHHH-HHhcCCC-chh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 291 LVLQQLSGINGVLFYSSNI-FANAGIS-SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
..+ .......+.|.+ .+..+.+ ... .......+..+++.++.+++.||+++|+..........+....+...
T Consensus 218 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 218 FFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233466677776 4455776 344 44677788888889999999999998877766666655555544432
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
.... ..........+.+.+.+ ...+....+..|..|+++++++.|+.+...++|+.++|
T Consensus 294 ~~~~------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFSS------------SPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHC------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2211 11223333333444333 33566679999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=245.79 Aligned_cols=335 Identities=19% Similarity=0.201 Sum_probs=228.3
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
.....+.+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++..++|++.+++
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA 96 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 44455668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHH-hhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLF 218 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~-~~~~ 218 (487)
.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++.. +..+
T Consensus 97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887665 89999988776665553 3445
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhc
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (487)
.+||+++. +++ + +.......++.++++..+.......+....
T Consensus 177 ~~~~~~~~---~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (392)
T PRK10473 177 ILKETRPA---RAP-A------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTV---- 218 (392)
T ss_pred HcCCCCCc---ccC-C------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHH----
Confidence 56775321 000 0 000011122334444333222222222111
Q ss_pred hhhHHhhHHHHH-HhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 299 INGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 299 ~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
......+.|.++ ++.|.++.. ......+++.+++.++.+++.||+++|+.+..+.....++.+.+.....
T Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------- 291 (392)
T PRK10473 219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS------- 291 (392)
T ss_pred HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 112233344444 345776554 4556677888999999999999999999988887777666665554311
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
.........+...+++.+... ....+..|.+.|+ |.......++..+++.+.+++.+ .++.....
T Consensus 292 --------~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~ 357 (392)
T PRK10473 292 --------HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNM 357 (392)
T ss_pred --------HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 111222222223333322211 2334444544342 44444556677777777777776 44433333
Q ss_pred HHH
Q 011388 455 IYG 457 (487)
Q Consensus 455 ~~~ 457 (487)
+.+
T Consensus 358 ~~~ 360 (392)
T PRK10473 358 LIG 360 (392)
T ss_pred HHH
Confidence 333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=243.84 Aligned_cols=331 Identities=18% Similarity=0.227 Sum_probs=229.5
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
+..+.+.|.+|.+.+++|+|+++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY 84 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 34466779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHH-hhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLF 218 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~-~~~~ 218 (487)
.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++..++.. ...+
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888765 89999988777666553 3445
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhc
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (487)
++||+++.. +++ +.+.++...+.++.++++..+...+...+ ....
T Consensus 165 ~~~~~~~~~----~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 209 (377)
T PRK11102 165 FIPETLPKE----RRQ---------------------------PFHLRTTIRNFASLFRHKRVLGYMLASGF----SFAG 209 (377)
T ss_pred hCCccCccc----ccC---------------------------CCChHHHHHHHHHHHcChHHHHHHHHHHH----HHHH
Confidence 667754210 000 00000111234455555543332222221 1222
Q ss_pred hhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 299 INGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 299 ~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
......+.|.++. ..|.++.. .......++.+++.++.+++.||+|+|+.+..+.....+..+.+.......
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----- 284 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD----- 284 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 2333334444444 35776555 556667788899999999999999999988877765444333322221111
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHH-HHHHHHHHHhh
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW-LVSWIVTMTAN 442 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~g 442 (487)
...+...+.........+. ..+.......|..| +.++++.++.+.... +|..+++.+.+
T Consensus 285 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 285 ------LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred ------hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111122222222222221 22233355667766 678999998876644 56666666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-30 Score=245.20 Aligned_cols=342 Identities=13% Similarity=0.111 Sum_probs=237.7
Q ss_pred HHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHH
Q 011388 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (487)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~ 130 (487)
.+..+.+..+..++......+.+|.+++++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33344455566678888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH---HHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh-----------
Q 011388 131 II---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------- 196 (487)
Q Consensus 131 ~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----------- 196 (487)
++ ++++|++.++++|+++|+|.+...+....++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~ 186 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 86 5689999999999999999999999999999998777777778899999999999888876531
Q ss_pred -------------------hhhHHHHHhhh-HHHHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHH
Q 011388 197 -------------------VNWRVLAVLGV-LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255 (487)
Q Consensus 197 -------------------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (487)
.+||++|+... +..++.++. ...+||.+.. + +
T Consensus 187 ~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~--~---------------------- 239 (438)
T PRK10133 187 DVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N--H---------------------- 239 (438)
T ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c--c----------------------
Confidence 15666665433 333332222 2234542210 0 0
Q ss_pred HHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHH-HH-hcCCCchh--HHHHHHHHHHHH
Q 011388 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FA-NAGISSSN--VATFGLGVVQVV 331 (487)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~--~~~~~~~~~~~~ 331 (487)
.+++..+...+.+++++++.++...+..++... .......|.+.+ .+ ..|.++.. .......++.++
T Consensus 240 -----~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~v 310 (438)
T PRK10133 240 -----SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_pred -----ccccccchhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 000001112234566777765544433333222 222333455545 34 35777665 667778899999
Q ss_pred HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhc
Q 011388 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMS 411 (487)
Q Consensus 332 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (487)
++++++++.||+++|+.+..+..+..+++.+..+. .. ......+.+.+.+.+ ...|..++...
T Consensus 311 G~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~l~glg~~-~i~P~~~s~a~ 373 (438)
T PRK10133 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GG-------------HVGLIALTLCSAFMS-IQYPTIFSLGI 373 (438)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-------------hHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999998887766655444333221 10 011222333333333 34566678888
Q ss_pred ccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 412 EILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 412 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
+..|++ .+++.++.. ...+|+.++|.+.|.+.|.
T Consensus 374 ~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~ 407 (438)
T PRK10133 374 KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_pred cccchh-hccchhHHh-HHhccchHHHHHHHHHHHh
Confidence 887764 677778776 4557899999999999883
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=233.30 Aligned_cols=361 Identities=16% Similarity=0.198 Sum_probs=268.9
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChh---H
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---F 140 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~ 140 (487)
+.-...+++.+.+.+|+|+|++|.+++.++..+..++..++.|.+.||+|.|++..++.++..+-.+..+++.+++ +
T Consensus 28 ~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ 107 (417)
T COG2223 28 MVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ 107 (417)
T ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 4446677888889999999999999999999999999999999999999999999999999999999999987665 9
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHH----HHHhhhhhh---hHHHHHhhhHHHHHH
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML----AYLLGLFVN---WRVLAVLGVLPCTLL 213 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~----~~~l~~~~~---wr~~f~~~~~~~~~~ 213 (487)
+++++++.|++. +.+.+...++++|+||+++|.++|+.. ..|+|..+ +|.+....+ ||..-.+..+..++.
T Consensus 108 ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 108 LLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999974 677888999999999999999999998 77777665 455555557 998877777666664
Q ss_pred -HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 214 -IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 214 -~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
+..++...|.|+..... ++..+...+.++++++.| .+.+.+
T Consensus 186 ~v~~~~~~~d~p~~r~~~----------------------------------~~~~~~~~~~v~~~~~~W----~lsllY 227 (417)
T COG2223 186 AVLAWLGMNDVPEHRASV----------------------------------KPQLPAQLKAVFSNKDTW----LLSLLY 227 (417)
T ss_pred HHHHHHHhCCChhhhccc----------------------------------cccchhHHHHHhcCcchH----HHHHHH
Confidence 55556677766421000 001114456677777744 444555
Q ss_pred HHHhhchhhHHhhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011388 293 LQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 369 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (487)
+..++.+..+..++|.++++. +.++.. .......+.+.+.++++|+++||+|.+|++...+..++++..++......
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~ 307 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG 307 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc
Confidence 555666778888888888764 776655 56666778888999999999999999999999888888887777754322
Q ss_pred hcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh
Q 011388 370 EGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS 448 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~ 448 (487)
... ....+.....++......+.+. ...+-++...+|+ +.|.+.|+....+.+|+..-|...|...+ .+
T Consensus 308 ~~~--------~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg 377 (417)
T COG2223 308 FGH--------GGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG 377 (417)
T ss_pred ccc--------CcchHHHHHHHHHHHHHhccCc-chheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence 211 0112222332333333333333 3334677777765 57899999999999999999999999999 33
Q ss_pred -cchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 449 -SGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 449 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
+...++++..+.+++.+..+....+.
T Consensus 378 ~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 378 SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44557777777777776666554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=240.78 Aligned_cols=325 Identities=12% Similarity=0.101 Sum_probs=229.1
Q ss_pred cccchhHH-HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHH
Q 011388 67 GYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (487)
Q Consensus 67 ~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (487)
....|.+| .+.+++|.|..++|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34445555 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHH-hhhhccC
Q 011388 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI-PGLFFIP 221 (487)
Q Consensus 146 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~-~~~~~~~ 221 (487)
+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.++..++.. +..+++|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988999999999999999999999999999999999999988877 89999998877655543 3334455
Q ss_pred CChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhh
Q 011388 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (487)
Q Consensus 222 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (487)
|.+. + + .+++.+.+++++++++.+............ ....
T Consensus 187 ~~~~----~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 226 (400)
T PRK11646 187 AYKL----S-T-------------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYM----LAVQ 226 (400)
T ss_pred cccc----c-c-------------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHH----HHHH
Confidence 4210 0 0 000111234555666554332222211111 1122
Q ss_pred HHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
...+.|.+.++.+.++.. ......++....+....+++.| |.+.++.+..+.....++..++....
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------- 295 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 345667777776554444 3334444445444444455554 56656666666666555555444321
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
..+.......+...+.. ...|...++..+..|++.|+++.|+.+....+|..++|.+.|++.|.
T Consensus 296 ----~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 296 ----NLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ----hHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 11112222222223222 22355568888999999999999999999999999999999999984
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=238.95 Aligned_cols=334 Identities=25% Similarity=0.345 Sum_probs=266.9
Q ss_pred hhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc
Q 011388 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (487)
Q Consensus 57 l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (487)
+..+...++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS 85 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence 34445557777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~ 212 (487)
+++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+ +||+.+++.++..++
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876 799999988877666
Q ss_pred HHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 213 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
..+...+++ +. .+...+..
T Consensus 166 ~~~~~~~~~---------------------------------------------------------~~----~~~~~~~~ 184 (352)
T cd06174 166 LALLLLFLL---------------------------------------------------------RL----LLLLALAF 184 (352)
T ss_pred HHHHHHHHH---------------------------------------------------------HH----HHHHHHHH
Confidence 655444322 01 22222233
Q ss_pred HHHhhchhhHHhhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHHH
Q 011388 293 LQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSVAFF 368 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 368 (487)
+...........+.+.+.++. +.++.+ .......++..++.++.+++.||++||+ .+..+.....++.+.+....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 263 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP- 263 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-
Confidence 333334556667777777765 666555 6667778899999999999999999999 88888877777776665421
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-h
Q 011388 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W 447 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~ 447 (487)
..+.......+.+.+ .....+....+..|..|+++|++..|+.+....+++.++|.+.+.+.+ .
T Consensus 264 --------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~ 328 (352)
T cd06174 264 --------------SLALLLVALLLLGFG-LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328 (352)
T ss_pred --------------cHHHHHHHHHHHHHH-HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 112223333333333 334456677999999999999999999999999999999999999997 6
Q ss_pred hcchhhHHHHHHHHHHHHHH
Q 011388 448 SSGGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~ 467 (487)
++...+.+.+++.++..++.
T Consensus 329 ~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 329 GYGGVFLILAALALLAALLL 348 (352)
T ss_pred CcchHHHHHHHHHHHHHHHh
Confidence 66666777777666665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-30 Score=245.19 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=239.9
Q ss_pred ccccccchhHH-HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHH
Q 011388 64 FTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (487)
Q Consensus 64 ~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (487)
.......|.+| .+++++|++..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.++++|++.++
T Consensus 21 ~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (395)
T PRK10054 21 IGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVV 100 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455556665 46678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHhh-hh
Q 011388 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG-LF 218 (487)
Q Consensus 143 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~-~~ 218 (487)
++|++.|.+.+...+...++..|..|+++|++++++.....++|..++|.+++.+ +||..|++.++..++.++. .+
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 101 LFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888999999999999999999999999999999999998876 8999999887766665443 34
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhc
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (487)
++||+++. + ++ ++++..+.++.++++..+.......+..+.....
T Consensus 181 ~~~~~~~~---~-~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (395)
T PRK10054 181 WVQRSEKA---I-AT-------------------------------ETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAF 225 (395)
T ss_pred HHhccccc---c-cc-------------------------------chhhhhhhhhhccCceehHHHHHHHHHHHHHHHh
Confidence 45554210 0 00 0000111245566666555544433333322211
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
......|.+.. ++.+.+... .......+..+......+++.||.++|+.+..+.....++...+.... .
T Consensus 226 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~------ 296 (395)
T PRK10054 226 ASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--N------ 296 (395)
T ss_pred hhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--h------
Confidence 12223333322 222333322 333333444555667888999999999988887766666665554310 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
..+...+...+.+.+.. ...|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.| .++...+.+
T Consensus 297 ------~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~ 368 (395)
T PRK10054 297 ------SLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVI 368 (395)
T ss_pred ------HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHH
Confidence 11122222333333322 223555578888999999999988765 677999999999999999 444444544
Q ss_pred HHHHHHHHHH
Q 011388 456 YGIVCAFTVA 465 (487)
Q Consensus 456 ~~~~~~~~~~ 465 (487)
.+.+..+..+
T Consensus 369 ~~~~~~~~~~ 378 (395)
T PRK10054 369 LALAIVAAWL 378 (395)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=248.56 Aligned_cols=373 Identities=16% Similarity=0.119 Sum_probs=255.3
Q ss_pred CcchhHHHHHHHhhhcccccccccccch-hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSP-TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~ 122 (487)
.++..+.++..+++..+....+...++- .+..+.+|.+....+.+++.++|.++++++++++|.+.||++..+.+....
T Consensus 39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~ 118 (495)
T KOG2533|consen 39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG 118 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence 3344556666666666666666654433 244466899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----
Q 011388 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----- 197 (487)
+.+++..++.....|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|.+++..+
T Consensus 119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~ 198 (495)
T KOG2533|consen 119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG 198 (495)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence 999999988888999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -----hhHHHHHhhhHHHHHH-HhhhhccCCChH--HHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHh--hhccch
Q 011388 198 -----NWRVLAVLGVLPCTLL-IPGLFFIPESPR--WLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV--ASSSRR 267 (487)
Q Consensus 198 -----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 267 (487)
||||.|++.+++.++. ++..+++|+.|. +..++++++-.. ++.++.. ...++.
T Consensus 199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~-----------------~~~~~~~~~~~~~~~ 261 (495)
T KOG2533|consen 199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVV-----------------ERLRESPSGGIENKF 261 (495)
T ss_pred CCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHH-----------------HHHHhccCCCccccc
Confidence 8999999988777766 556677999986 222111111110 0111111 111114
Q ss_pred hhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc-
Q 011388 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA- 343 (487)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~- 343 (487)
++..+++.++++..+ .+.+..++.....+.+.+|+|.++++ .+++..+ ...++..++++++.+++|+++||.
T Consensus 262 ~~~~~~~a~~dp~vw----~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 262 KWKGFKEALKDPGVW----PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred CHHHHHHHHhchhHH----HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence 556777888888744 44445555555677788999999988 4576555 778888999999999999999994
Q ss_pred ---cchHHHHHHHHHHHH-HHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh-h
Q 011388 344 ---GRRLLLLISSSGMAA-SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN-I 418 (487)
Q Consensus 344 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~ 418 (487)
.+|........+... +...+... . . ........+.+........+......++....+ .
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~l~~~---~------------~-~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k 401 (495)
T KOG2533|consen 338 TIFARRLLFIVFLCLYAIIGAISLLAA---A------------V-LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK 401 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh---c------------c-chHHhHHHHhcchhhHHHHHHHHhhccccccchHH
Confidence 445444443333322 22222211 0 0 011111111111111112233345555544444 4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhh
Q 011388 419 KSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTF 453 (487)
Q Consensus 419 ~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~ 453 (487)
+-+..+......+.+++++|.+.-.... ......+
T Consensus 402 ~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 402 ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence 4555556666667777777776655443 3444445
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=241.08 Aligned_cols=337 Identities=13% Similarity=0.109 Sum_probs=242.6
Q ss_pred HHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH
Q 011388 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (487)
Q Consensus 53 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~ 132 (487)
.+++...+..++..+...|.+|.+++++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34455566677888888999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HH---hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------------
Q 011388 133 SF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (487)
Q Consensus 133 ~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------------ 197 (487)
.. .+|++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 468999999999999999999999999999999999999999999999999999998876533
Q ss_pred ------------------hhHHHHHhhhHHHHHHHhhhhc--cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHH
Q 011388 198 ------------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI 257 (487)
Q Consensus 198 ------------------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (487)
+||++|++.++..++..+...+ .||.++ + +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~----------------------- 215 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--D----------------------- 215 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--c-----------------------
Confidence 4999998877766555433332 343210 0 0
Q ss_pred HHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcC--CCchh--HHHHHHHHHHHHHH
Q 011388 258 KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG--ISSSN--VATFGLGVVQVVAT 333 (487)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~--~~~~~~~~~~~~~~ 333 (487)
+++.....+.+++++++..+...+..++.... ......|.+.+.++.+ .+... ...........+|+
T Consensus 216 -----~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~----e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 216 -----AKQISFSASLSRLARIRHYREGVIAQFFYVGV----QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred -----cccccchhhHHHHHhChhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001112334566666655544444443333 2334456666666543 22221 23444456778999
Q ss_pred hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhccc
Q 011388 334 GVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI 413 (487)
Q Consensus 334 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (487)
++++++.||+++|+.+..+.+...+..++.... .. ......+.+.+.+.+ ...|..++...+.
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~-------------~~~~~~l~~~glf~s-~~fp~i~sl~~~~ 349 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG-------------HVGLYCLTLCSAFMS-LMFPTIYGIALKG 349 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-------------hHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 999999999999998877776666655555431 10 112333333344343 3347777888888
Q ss_pred CChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 414 LPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 414 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
.+++.+..+.++.... +|+++.|++.|.+.|.
T Consensus 350 ~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 350 LGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred hhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 8877654455544443 9999999999999993
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=242.78 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=233.0
Q ss_pred ccccccccccchhHHHHHhhcC--CChhhHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH
Q 011388 60 IQFGFTCGYSSPTQAEIISDLK--LTISEFSIFGSL-----ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (487)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~ 132 (487)
+.+.++...+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777754 455666665543 333345689999999999999999999999999999999
Q ss_pred HHhcChh--------HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh--------
Q 011388 133 SFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------- 196 (487)
Q Consensus 133 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~-------- 196 (487)
+++++++ .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999976 488899999999999999999999999999999999999999999999998876532
Q ss_pred ----hhhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhH
Q 011388 197 ----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRF 272 (487)
Q Consensus 197 ----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (487)
.+||+.|++.++..++........||+|++..+++ ++++.+.+.
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~ 210 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPI 210 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCH
Confidence 37999999887776666655556777654211100 011112234
Q ss_pred HHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 011388 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL 349 (487)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 349 (487)
++.++++... ...... ..+...........+.|.+.+ +.+.++.. .......+...++.++.+++.||++||+.+
T Consensus 211 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 211 RETLTKHRKP-FLLGLG-LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHhchHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4455543311 122222 222222234455667777774 45666554 455666788899999999999999999977
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH-HH
Q 011388 350 LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TL 428 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~ 428 (487)
.....+..+............. ..+.......+.+.+.+ ...+...++..|.+|++.|+++.++. +.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 356 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALLDSG-----------SFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLAYNL 356 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeehhHh
Confidence 6554443332211111111000 11122222222233232 23355568999999999999999985 55
Q ss_pred HHHHHHHHHHHHhhhHhhh
Q 011388 429 ANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 429 ~~~~g~~i~~~~~g~~~~~ 447 (487)
...+|..++|.+.|++.|.
T Consensus 357 ~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 357 AGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5678899999999999994
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=235.97 Aligned_cols=331 Identities=14% Similarity=0.117 Sum_probs=229.6
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (487)
+....+.|.+|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+++.+++|++.+++
T Consensus 22 ~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIA 101 (394)
T ss_pred HHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 55567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH-Hhhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLF 218 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~-~~~~~ 218 (487)
.|++.|++.+...+....+..|.+++++++++.++.+.+..+|..++|.+++.+ +||+.|++.++..++. .+..+
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 102 ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888999999999999999999999999999999888765 8999999877655544 33445
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhc
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (487)
+.||+++.. + ++++.+..+++.++++..+........... .
T Consensus 182 ~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 222 (394)
T PRK11652 182 WMPETRPAD---A--------------------------------RRTRVLASYRTLLSNRRFNCYLLMLIGTLA----G 222 (394)
T ss_pred hCCccCccc---c--------------------------------chhHHHHHHHHHHcChHHHHHHHHHHHHHH----H
Confidence 677764210 0 000012334455555554433332222221 1
Q ss_pred hhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 299 INGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 299 ~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
......+.+.++++ .|.+... .......++.+++..+.+++.||.+++... ......++.+.+........
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---- 296 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGV---- 296 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----
Confidence 22223344445555 5776554 344445667777888888888888733322 22222222222211110000
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
...+.......+.+.+.+. ..|....+..|..| ++++++.++.+....+|+.+++.+.+.+.+.
T Consensus 297 ------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 297 ------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred ------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 0112222333333333332 34555577778777 4689999999999999999999999887664
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=236.80 Aligned_cols=373 Identities=11% Similarity=0.086 Sum_probs=246.9
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-H
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-L 118 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~-~ 118 (487)
++++...++.+++. .+.......+.+|...++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +
T Consensus 10 ~~~~~~~~~~l~~~---~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l 84 (491)
T PRK11010 10 QQPNSAILLILGFA---SGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL 84 (491)
T ss_pred cccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence 34444444444443 34666777888999999999999999997 4444444 5899999999999 99885 6
Q ss_pred HhhhhhHHHHHHHHHHh---cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh
Q 011388 119 MIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 195 (487)
..+.++.+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.
T Consensus 85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~ 164 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL 164 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888776 467889999999999999999999999999999999999999999999999999886665
Q ss_pred hh-----hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhh
Q 011388 196 FV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (487)
Q Consensus 196 ~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (487)
.+ |||..|++.++..++..+..+++||+++.. + +++ +.++....
T Consensus 165 ~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~-~~~---------------------------~~~~~~~~ 213 (491)
T PRK11010 165 WLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---P-VPK---------------------------TLEQAVVA 213 (491)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---c-ccc---------------------------chhhhHHH
Confidence 43 899999998877776666655678764310 0 000 00000122
Q ss_pred hHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHH-HHhcCCCchh--HHH-HHHHHHHHHHHhHHHHHhhhccch
Q 011388 271 RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANAGISSSN--VAT-FGLGVVQVVATGVNTWLMDKAGRR 346 (487)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~--~~~-~~~~~~~~~~~~~~g~l~d~~~~~ 346 (487)
+++++++++..+.......+.... ......+.+.+ .++.|++..+ ... ....++.+++.+++|+++||+++|
T Consensus 214 ~l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~ 289 (491)
T PRK11010 214 PLRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF 289 (491)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 355566555444333222222211 12223333444 3456887766 332 233568889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 347 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
+.+..+.+...+....+........ ..+.......+.....+.+. +..+++..+..+++.+++..|+.
T Consensus 290 ~~l~i~~~l~~l~~l~~~~l~~~~~-----------~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~ 357 (491)
T PRK11010 290 RALMIFGILQGVSNAGYWLLSITDK-----------NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALL 357 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHH
Confidence 8776655544444333322111110 01111111222111111111 22347777888888899999999
Q ss_pred HHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHH
Q 011388 427 TLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 427 ~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+....+|..+++.+.|++.| .++...+.+.+++++++.+....
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 55555565566655555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=237.68 Aligned_cols=356 Identities=15% Similarity=0.210 Sum_probs=258.7
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc--ChhHHHHHHHHHHHhhhh
Q 011388 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (487)
Q Consensus 77 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 154 (487)
..+++.+++|.+++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 557899999999999999999999999999999999999999999999999999998875 556889999999999999
Q ss_pred cchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhhh-hccCCChHHHH
Q 011388 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL-FFIPESPRWLA 228 (487)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~ 228 (487)
.+|+...+..+|.|++||++..++..++..+|.+++-++++.+ ||++.|++.++.+++..+++ ++..|+|....
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999999999999999999999999999999999988887766 89999999998888875555 44677775211
Q ss_pred hcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccc--hhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhH
Q 011388 229 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSR--RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (487)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (487)
.- .+.|.+..++...+++. +.+.+++++++++. +++..+..++.......+..|.
T Consensus 225 ~i-------------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 225 NI-------------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred CC-------------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 10 11112222222221111 14678999999987 5556666666666788899999
Q ss_pred HHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch--------HH-HHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 307 SNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--------LL-LLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 307 ~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
|.|+++. +++... +...+..+...+..+++|.++||+.+| |. -.++....+++++.+++. +
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-------~ 354 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-------S 354 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-------C
Confidence 9999874 665443 778888999999999999999998652 11 122333333333333321 1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh----hhcc
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD----WSSG 450 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~----~~~~ 450 (487)
++.. +..++.+ .+..++. +..............+++.+..+|+.+....+.++++|.+.|.+.. ..+.
T Consensus 355 ~~~~------~~a~~~l-~~~~~~~-g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~ 426 (466)
T KOG2532|consen 355 DEHR------LLAVILL-TIAIGLS-GFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR 426 (466)
T ss_pred CCcc------hHHHHHH-HHHHHHc-ccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence 1111 1122222 2222222 2222222333333245678999999999999999999999999983 2455
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 011388 451 GTFLIYGIVCAFTVAFVSLW 470 (487)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~ 470 (487)
..|.+.+++.+++.++..++
T Consensus 427 ~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 427 IVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHhchheeEe
Confidence 56777777777777655554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=230.71 Aligned_cols=323 Identities=16% Similarity=0.160 Sum_probs=228.7
Q ss_pred ccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHH
Q 011388 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (487)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (487)
....+|.+|.+.+|+|.|.++.|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988888887 789999999999
Q ss_pred HHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------hhHHHHHhhhHHHHHHHhhhhc
Q 011388 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFF 219 (487)
Q Consensus 146 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~ 219 (487)
++.|++.+...+....++.|+++ ++|++++++.+.+.++|..+++.++..+ +||+.|...++..++... .+
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~ 171 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AW 171 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HH
Confidence 99999999988888889999986 6899999999999999999888776554 399888776554433322 22
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhch
Q 011388 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (487)
Q Consensus 220 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (487)
+|+.++ +++ ++++..+...++.++++..+...+... .....+
T Consensus 172 ~~~~~~------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 213 (355)
T TIGR00896 172 IPQVRR------RVA----------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFG----LQSGLY 213 (355)
T ss_pred hhhhcc------ccC----------------------------CCCCCCCCCCchhhcCHhHHHHHHHHH----HHHHHH
Confidence 343321 000 000001112334555554433222222 222234
Q ss_pred hhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
.....|.|.++++.|.+... .......++.++++++.|++.||+ +||+.+..+.....++.+.+.+...
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 285 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-------- 285 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh--------
Confidence 45567788888887877655 566677889999999999999999 4566666666666665554443210
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcc-cCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSE-ILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
. .... ...+.+.+.+ ...+...+...+ ..+++.++...++.+...+++.+++|.+.|++.|.
T Consensus 286 ------~-~~~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 286 ------H-GLWA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred ------h-HHHH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111 1222233222 223443344443 34456778999999999999999999999999983
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=230.46 Aligned_cols=348 Identities=13% Similarity=0.046 Sum_probs=245.9
Q ss_pred cccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH----HhhhhhHHHHHHHHHH
Q 011388 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL----MIAAVPNIIGWLIISF 134 (487)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~----~~~~~~~~~~~~~~~~ 134 (487)
.+...+..+...|.+|.+.+|+|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..
T Consensus 13 ~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (382)
T TIGR00902 13 FFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHh
Confidence 333445567888999999999999999999999999999999999999999999985433 333222222 34457
Q ss_pred hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
+++++.+++.|.++|.+.+...|...++..++ +++|++..+......++|.+++|++++.+ |||..|++..+..
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 88999999999999999999999988887765 47789999999999999999999988776 8999988766543
Q ss_pred HHHHhhhhccCCCh-HHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHH
Q 011388 211 TLLIPGLFFIPESP-RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (487)
Q Consensus 211 ~~~~~~~~~~~e~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (487)
++.++.. .++|++ +. + ++ ++++.++..+.++++++|..+......+
T Consensus 169 ~~~~~~~-~~~~~~~~~----~-~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 215 (382)
T TIGR00902 169 AFMLIGF-LIKPTIPPK----D-AI---------------------------PEDESQGDSAFIALLKNPMNLRFLAAVC 215 (382)
T ss_pred HHHHHHH-HcCCCCCCC----c-cc---------------------------cccccccchhHHHHHcChHHHHHHHHHH
Confidence 3333333 333332 10 0 00 0000111224566777776555544433
Q ss_pred HHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (487)
+... .......+.+.+.++.|.++.. .......+..+++.++.+++.||+++|+.+..+.+...+....+...
T Consensus 216 l~~~----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~- 290 (382)
T TIGR00902 216 LIQG----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI- 290 (382)
T ss_pred HHHH----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-
Confidence 3332 2344455677777888887665 55556678888889999999999999999998888888887766543
Q ss_pred HhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHH-HHHHHHHHHHHHHhhhHhh
Q 011388 368 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~~~~ 446 (487)
...+.....-.+.+..++... +....++.+. |+++++++.++++ ....+|..++|.+.|++.|
T Consensus 291 --------------~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 291 --------------EAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333344444444333 3345777777 8889999999986 4678999999999999999
Q ss_pred hhcchhhHHHHHHHHHHH
Q 011388 447 WSSGGTFLIYGIVCAFTV 464 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (487)
..+...+.+.+++.+++.
T Consensus 355 ~~g~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 355 TLGAGTFVFMAIIAAAAF 372 (382)
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 544566777777666543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-28 Score=230.89 Aligned_cols=364 Identities=14% Similarity=0.067 Sum_probs=221.7
Q ss_pred cccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH---HhcC-----
Q 011388 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKD----- 137 (487)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~~----- 137 (487)
+...|.+|. +.+++|+|+.+.|++.+++.++..+++++.|+++||+|||+++.++..+.+++..... .++.
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566665 4556999999999999999999999999999999999999999887666655443221 1111
Q ss_pred hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHH
Q 011388 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLI 214 (487)
Q Consensus 138 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~ 214 (487)
....++++++.|.+.....+....+..+. ++++++.++......++|..++|.+++.+ +|++.|++.++..++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~ 184 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL 184 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence 11122333334433333333333333222 34567788888888899999999888877 89999998887776665
Q ss_pred hhhhcc-CCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHH
Q 011388 215 PGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (487)
Q Consensus 215 ~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (487)
+..+++ +|.++....+ ++ +.+++++....+.++.++++..+...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~~-~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 185 VLLFFAKPDAPSTAKVA-NA--------------------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHhcccccccchhhhc-cc--------------------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 555554 3332200000 00 0000011112234456666665544433222222
Q ss_pred HHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011388 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
.........+.|......+.+.+... .......+...++.++.|++.||+++|+.+..+.++..++.+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----- 312 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----
Confidence 11111112233333333333443332 44555667788999999999999999999888777777666665532
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH-HHHHHHHHHHHHHHHhhhHhh-hhc
Q 011388 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV-ATLANWLVSWIVTMTANFLLD-WSS 449 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~~~~-~~~ 449 (487)
...+.......+.+..... ..+....+..|.+|++.+++..+. .++...+|.+++|.+.|++.| .++
T Consensus 313 ----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~ 381 (420)
T PRK09528 313 ----------TGPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF 381 (420)
T ss_pred ----------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 0112222222222222221 122334677888899988888766 678889999999999999999 667
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 450 GGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
...+.+.+++.++..++.....++.+
T Consensus 382 ~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 382 QGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 77777777777766666655555443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-27 Score=224.08 Aligned_cols=349 Identities=13% Similarity=0.147 Sum_probs=216.3
Q ss_pred ccccccchhHHH-HHhhcCCChhhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHH-HhhhhhHHHHHHHHHHhcChhH
Q 011388 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSKDSSF 140 (487)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (487)
.......|.+|. +.+|+|.+.+++|++.+...+ ++.++++++|+ +||+||||.+ ..+.++.+++..+.+++++++.
T Consensus 29 ~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
T PRK15011 29 IAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFV 107 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555677665 678899999999999877655 55555555555 9999999875 5566777788888899999998
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCcCcc--chhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHH
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~ 214 (487)
+++.+.+.|...+...|...+++.|+.++++| +...++.+++.++|.+++|++++.+ |||..|++.++..++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~ 187 (393)
T PRK15011 108 LLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCG 187 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 87766555555567788888888888876655 3445788888999999999988766 99999998887666554
Q ss_pred -hhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhc-ccchhHHHHHHHHH
Q 011388 215 -PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK-RYWFPLMIGIGLLV 292 (487)
Q Consensus 215 -~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (487)
..++++||.++. ++ .+ +++.+ ...++ +..+..+.......
T Consensus 188 ~~~~~~~~~~~~~---~~-~~---------------------------~~~~~-------~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK15011 188 VMVWLFLPSMRKE---LP-LA---------------------------TGTLE-------APRRNRRDTLLLFVICTLMW 229 (393)
T ss_pred HHHHhhcCccCCC---Cc-cc---------------------------ccccc-------ccccccccHHHHHHHHHHHH
Confidence 444557876420 00 00 00000 00011 11111111111111
Q ss_pred HHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011388 293 LQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 369 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (487)
........+.|.++++ .+.++.. .......+..+++.++.|+++||++||+.+..+.....+....+...
T Consensus 230 ----~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--- 302 (393)
T PRK15011 230 ----GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--- 302 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---
Confidence 1223334466666643 5776554 33444456677889999999999999987766554443332222111
Q ss_pred hcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh
Q 011388 370 EGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS 448 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~ 448 (487)
. ..+.......+.....+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.| .+
T Consensus 303 ~------------~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 303 H------------SPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred h------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 1111111111111111111 12233566788886 48999999999999999999999999999 55
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccc
Q 011388 449 SGGTFLIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+...+.+.+++.+++ ++..++.||
T Consensus 369 ~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (393)
T PRK15011 369 YHAVFWFALVMIIAT-LFCLLRIKD 392 (393)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhhcC
Confidence 555555555544444 444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=231.57 Aligned_cols=330 Identities=16% Similarity=0.108 Sum_probs=218.1
Q ss_pred ccccccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc-ChhHH
Q 011388 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFL 141 (487)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l 141 (487)
.......+.+|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++++++ +++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL 94 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555667888895 9999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh----hh----------hhhHHHHH-hh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----LF----------VNWRVLAV-LG 206 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~----~~----------~~wr~~f~-~~ 206 (487)
++.|+++|++.+. .+....++.|++|+++|+++.++.....++|..+++.++ .. .+||+.|+ ..
T Consensus 95 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~ 173 (366)
T TIGR00886 95 LLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVP 173 (366)
T ss_pred HHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHH
Confidence 9999999999654 566789999999999999999998866666665554443 32 26999984 33
Q ss_pred hHH-HHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHH
Q 011388 207 VLP-CTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (487)
Q Consensus 207 ~~~-~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (487)
++. .+..++...+.+|+|+.. +++++.. ... . ....+++.....++.++++..+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 174 AGILLLPALLIFFVGADTPPGK---PATGKLS-------FKG-A-----------RWSVGTGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred HHHHHHHHHHHHHhcccCCccc---ccchhcc-------ccc-c-----------cccccchhHHHHHHHHhccchhhHH
Confidence 433 333344445566665310 0000000 000 0 0000001111344556666544433
Q ss_pred HHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 286 IGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
+....... .......+.+.++++ .|.++.. .......+..++++++.+++.||+++|+....+......+..+
T Consensus 232 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 307 (366)
T TIGR00886 232 LLYSVTFG----SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL 307 (366)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHH
Confidence 33322222 233455666667654 4776555 4555667788899999999999999988777766655555444
Q ss_pred HHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHH
Q 011388 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLV 433 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 433 (487)
+.+..... ...+.......+.....+.+. +..+.+..+..| +++|++.|+.+..+++|
T Consensus 308 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 308 VVLGLVSP-----------LSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHhcCCCc-----------chHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 44321100 011122222222333333332 344577778777 57999999999887765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=222.29 Aligned_cols=343 Identities=14% Similarity=0.045 Sum_probs=232.6
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchh----HHHHhhhhhHHHHHHHHHHhcChh
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDSS 139 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr----~~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
...+...|.+|.+.+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....+..+++++
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 95 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFW 95 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHH
Confidence 4457788999999999999999999999999999999999999999999983 3333322222 223344568999
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHh
Q 011388 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 140 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~ 215 (487)
.+++.|++.|++.+...|...++..++ +++|++..+......++|..+||++++.+ |||..|++.++..++..+
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 999999999999999999988888877 45678888888888899999999988876 999999887765554444
Q ss_pred hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHH
Q 011388 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (487)
Q Consensus 216 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (487)
..++.||.++ ++++ +++.++...+++++++++..+......++....
T Consensus 174 ~~~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~- 220 (382)
T PRK11128 174 GQLLRPTIMP----QGES----------------------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGS- 220 (382)
T ss_pred HHHccCCCCC----cccc----------------------------ccccccccchHHHHHcChhHHHHHHHHHHHHHH-
Confidence 4444554321 0000 000011123567788877665554443333322
Q ss_pred hhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011388 296 LSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
......+.+.+.++.|.++.. .......+..++..++.+++.||+++|+.+..+.....++.+.+...
T Consensus 221 ---~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------- 290 (382)
T PRK11128 221 ---HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------- 290 (382)
T ss_pred ---hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 223344556666777877554 44445567778888999999999999999888877777766555432
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHH-HHHHHHHHHHHHHhhhHhhhhcchh
Q 011388 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLDWSSGGT 452 (487)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~~~~~~~~~~ 452 (487)
...+......++.+..++.. .+....+..+. +++++++..++.+ .....|..++|.+.|.+.|..+...
T Consensus 291 --------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~ 360 (382)
T PRK11128 291 --------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGV 360 (382)
T ss_pred --------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 11233333344444444332 23344666665 5666788888886 4456777999999999999433445
Q ss_pred hHHHHHHHHHH
Q 011388 453 FLIYGIVCAFT 463 (487)
Q Consensus 453 ~~~~~~~~~~~ 463 (487)
++..+++.+++
T Consensus 361 ~~~~~~~~~~~ 371 (382)
T PRK11128 361 FWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=226.85 Aligned_cols=358 Identities=11% Similarity=0.041 Sum_probs=236.9
Q ss_pred ccc-chhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHhhhhhHHHHHHHHHHhcChhHHHHH
Q 011388 67 GYS-SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (487)
Q Consensus 67 ~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (487)
+.. .+..+.+.+++|++.+|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.
T Consensus 19 ~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00889 19 GSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPV 98 (418)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 444 445566778899999999999999999999999999999999965 888888999998999999999999999999
Q ss_pred HHHHHHhhhhcchhHHHHHHhh--------CCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHH
Q 011388 145 RLLEGFGVGVISYTVPVYIAEI--------APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~ 212 (487)
|++.|++.+...+...++..++ .....|.|..| .+|.+++|.+++.+ .|+. |++.++..++
T Consensus 99 ~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~ 171 (418)
T TIGR00889 99 LLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSAL 171 (418)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHH
Confidence 9999998877777666554322 22234555555 24556666666544 3443 4455554445
Q ss_pred HHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 213 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
..+..+++||+|+. ++++++ +.++..+.+.++++|++.++..++..++..
T Consensus 172 ~~~~~~~~~e~~~~---~~~~~~---------------------------~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 221 (418)
T TIGR00889 172 LGVFALTLPDIPVA---KSTAKM---------------------------SIKVMLGLDAFILFKNKRMAIFFFFSMLLG 221 (418)
T ss_pred HHHHHhcCCCCCCC---cccccc---------------------------CHHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence 54556678887531 000000 000001112345667776555444443332
Q ss_pred HHHhhchhhHHhhHHHHHHhcCCCc----------hhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 293 LQQLSGINGVLFYSSNIFANAGISS----------SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
.. ......+.+.+.++.|.++ .........+..+++.+..+++.||+|+|+.+..+.+...++..+
T Consensus 222 ~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l 297 (418)
T TIGR00889 222 AP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGF 297 (418)
T ss_pred hH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 21 1223345566666655432 125566667788899999999999999999998888877776555
Q ss_pred HHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHH-HHHHHHHHHHHHHh
Q 011388 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVAT-LANWLVSWIVTMTA 441 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~ 441 (487)
+... ... ....+......++.+.+.+ ...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.
T Consensus 298 ~~~~---~~~--------~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 298 FAYG---DPE--------YFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHc---Ccc--------hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5431 000 0011122222333333332 223444578899999999999999997 67889999999999
Q ss_pred hhHhhh-h------cchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 442 NFLLDW-S------SGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 442 g~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
|++.|. + +...+.+.+++.++.+++.+++.+|+++.
T Consensus 366 G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 366 GVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999983 2 34556777777777777777778877554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=221.80 Aligned_cols=359 Identities=14% Similarity=0.078 Sum_probs=237.2
Q ss_pred cccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhH-HHHhhhhhHHHHHHHH
Q 011388 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGWLII 132 (487)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~~~~~ 132 (487)
++..++..+.....+|.+-++.|+|.+++|++..+... .+.++++|+++||+ |||| ++.++.++.+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999777776 69999999999999 8765 7888899998888888
Q ss_pred HHhc---ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH
Q 011388 133 SFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAV 204 (487)
Q Consensus 133 ~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~ 204 (487)
++.+ +++.+++..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+ |||..|+
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 8873 5677888888889999999999999999999999999999999999999999988766543 8999999
Q ss_pred hhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhH
Q 011388 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (487)
+.++..++..+..+++||+++.. +++++ .+++...+++++++++.++..
T Consensus 166 i~a~~~l~~~l~~~~~~e~~~~~---~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 166 LMAGLMLAGALTTLWAPEPEVPA---RPPRS----------------------------LGEAVVGPLRDFFSRRGAWAL 214 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCcccc---cccch----------------------------hHHHHHHHHHHHHhCcCHHHH
Confidence 98876666555556677754310 00000 000122345677787776655
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchhHHHH--HH-HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATF--GL-GVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (487)
.....+........ .....+.+.++.|.++...... .. .++.+++.++.+++.||+++|+.+..+.....+..+
T Consensus 215 l~~~~l~~~~~~~~---~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 215 LLLIVLYKLGDAFA---GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 54433333222111 1122334445568876653222 22 345788999999999999999887766655544433
Q ss_pred HHHHHHHhhcccCCCccchhHHHHHHHHHHH---HHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLV---TVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
.+.......+ ..+....... +..........+....++.+.+|.+. .++.+....++..+++
T Consensus 292 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 356 (402)
T PRK11902 292 GYWVLAVTPK-----------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVG 356 (402)
T ss_pred HHHHHHhcCC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHH
Confidence 3322111111 0111111111 11111112222344466666666554 4556666677887777
Q ss_pred HHhhhHhh-hhcchhhHHHHHHHHHHHHHHH
Q 011388 439 MTANFLLD-WSSGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 439 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
.+.|.+.| .++...+.+.+.+++++.++.+
T Consensus 357 ~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 357 PTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 78999999 6666666666666656544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=204.26 Aligned_cols=352 Identities=15% Similarity=0.143 Sum_probs=263.1
Q ss_pred hhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH--
Q 011388 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-- 133 (487)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~-- 133 (487)
..-.++.|+......+.+|.+.+.|+++..|.+++...++.++.+.+++.|++.+|+|+|+-+++|+.++++++.+..
T Consensus 19 t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA 98 (422)
T COG0738 19 TSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA 98 (422)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 333466778888888999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -HhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---------------
Q 011388 134 -FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------- 197 (487)
Q Consensus 134 -~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--------------- 197 (487)
...++..++++-++.|.|.+...+....++....++++..+.+++.+...++|.+++|++++.+
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~ 178 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQIL 178 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHH
Confidence 6678999999999999999999999999999999998889999999999999999999998655
Q ss_pred --------hhHHHHHhhhHHHHHHHhhhhc--cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccch
Q 011388 198 --------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRR 267 (487)
Q Consensus 198 --------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (487)
.||++|...+...++..+.... .|+.+. ..+++.+.
T Consensus 179 ~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------------~~~~~~~~ 224 (422)
T COG0738 179 AIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------------AAPSLGAS 224 (422)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------cccccccc
Confidence 3777777766655555444443 344321 00011111
Q ss_pred hhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhcc
Q 011388 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAG 344 (487)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~ 344 (487)
+.....+++++|+++...++.+++.... .....|.+.++.+ .|.+..+ ........+.++|++++.++.+|+.
T Consensus 225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~ 300 (422)
T COG0738 225 GSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK 300 (422)
T ss_pred ccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1115678888888777776666666554 4556666777766 5766555 6677778899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhH
Q 011388 345 RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGS 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 424 (487)
..|.+....++..+.++...+. . ....+..+. ..+.+.....|..++...+..| + .....|
T Consensus 301 ~~k~Laf~a~~~ill~~~~~l~---~-------------g~v~~~~l~-~ig~F~simfPTIfslal~~l~-~-~ts~~s 361 (422)
T COG0738 301 PEKYLAFYALIAILLLLAVALI---G-------------GVVALYALF-LIGLFNSIMFPTIFSLALKNLG-E-HTSVGS 361 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---c-------------ChHHHHHHH-HHHHHhHHHHHHHHHHHHhccC-c-cccccc
Confidence 9888877665554444444432 1 112333333 3344445556777788888888 3 344555
Q ss_pred HHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHH
Q 011388 425 VATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTV 464 (487)
Q Consensus 425 ~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 464 (487)
..-.....|+++.|++.|++.| .+....+......|.+..
T Consensus 362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5666778999999999999999 444444444444444444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=218.94 Aligned_cols=357 Identities=14% Similarity=0.093 Sum_probs=228.8
Q ss_pred ccccccchhHHHH-HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH---HHhc---
Q 011388 64 FTCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSK--- 136 (487)
Q Consensus 64 ~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~--- 136 (487)
.......|.+|.. .+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3345666777764 56789999999999999999999999999999999999999998777665544332 1222
Q ss_pred --ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHH
Q 011388 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (487)
Q Consensus 137 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~ 211 (487)
....+.+.|++.|++.+...+....+..|..+ ++++..+......++|.+++|.+++.+ +||+.|++.++..+
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHH
Confidence 23345677899999988888888888777533 345566777777888888888888765 89999999887777
Q ss_pred HHHhhhhc-cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHH
Q 011388 212 LLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (487)
Q Consensus 212 ~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (487)
+..+..+. .||+|+... .++ . .+.++++++..+.+++++++..+...+....
T Consensus 174 ~~~~~~~~~~~~~~~~~~----~~~---------------------~--~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 226 (396)
T TIGR00882 174 ILMLLLMFAKPKAPSSAT----VAN---------------------A--LGANASAFSLKLALELFRQRKFWMFVLYVVG 226 (396)
T ss_pred HHHHHHHHhCCCCchhhh----hhc---------------------c--cccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 66544444 444432100 000 0 0000111222356677777765443333222
Q ss_pred HHHHHhhchhhHHhhHHHHHHhc----CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 011388 291 LVLQQLSGINGVLFYSSNIFANA----GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
... .+.....+.+.++++. +.+... .......+...++.+..+++.||+++|+.+..+..+.++...+..
T Consensus 227 ~~~----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 227 VAC----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHH----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 221 1222222334443332 332222 445555677788889999999999999998887777666555443
Q ss_pred HHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH-HHHHHHHHHHHHHHHhhh
Q 011388 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV-ATLANWLVSWIVTMTANF 443 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~ 443 (487)
.. . ..+.......+.+.+... .......+..+..|++.++++.+. .+....+|++++|.+.|+
T Consensus 303 ~~---~------------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~ 366 (396)
T TIGR00882 303 FA---T------------TALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN 366 (396)
T ss_pred hc---C------------ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence 21 1 112222222222222211 111223456667788878877766 678999999999999999
Q ss_pred Hhh-hhcchhhHHHHHHHHHHHHHHHH
Q 011388 444 LLD-WSSGGTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 444 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
+.| .++...+.+.+++.++.+++..+
T Consensus 367 l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 367 MYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999 67777788888877777665443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=215.65 Aligned_cols=341 Identities=13% Similarity=0.068 Sum_probs=240.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHH
Q 011388 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (487)
Q Consensus 81 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 160 (487)
+-+.+++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++.++++.++++|.+||+|.+...++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcCc-cchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHH
Q 011388 161 VYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTED 235 (487)
Q Consensus 161 ~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 235 (487)
++++|.+|+++ |++++|+...+.++|.++||++|+.+ |.+.+|++.++.+++...+.+++-|..+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---------- 251 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---------- 251 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----------
Confidence 99999999764 79999999999999999999999887 9999999999988888776666543211
Q ss_pred HHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCC
Q 011388 236 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (487)
.+++...+..+++.+++++.......... +++......-+.+.....++...
T Consensus 252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~---~~n~~lafLePtlslwm~e~m~~ 303 (464)
T KOG3764|consen 252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAIT---FSNSSLAFLEPTLSLWMLETMFT 303 (464)
T ss_pred -------------------------cCccccccCccHHHHHhCchHhhhhcchh---hccchHHHhCcccHHHHHHhccC
Confidence 00112333445777888776443322222 22211111222222223333442
Q ss_pred Cchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHH
Q 011388 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVT 393 (487)
Q Consensus 316 ~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (487)
+... ..++...+...++..+.|.+.||++..+.+.....+..++..+..+.. .... ...+.....+.+
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~-~~~~---------~~L~vp~~~l~~ 373 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF-ATSI---------AQLWVPNFGLGF 373 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh-hhhH---------HHHhhhhHHHHH
Confidence 2212 667777889999999999999999954444333222233322222111 1110 112222233333
Q ss_pred HHHHHhcCcccchhhhhcccCChh---hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHH
Q 011388 394 VVISFSLGVGAIPWVIMSEILPVN---IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
.+........|.. .+..+....+ ..|...++......+|.++||.++|.+.+ .+..+...+++...++-+-+..+
T Consensus 374 ~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 374 GIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334443 4444444444 67899999999999999999999999999 88888888888877776655444
Q ss_pred h
Q 011388 470 W 470 (487)
Q Consensus 470 ~ 470 (487)
+
T Consensus 453 l 453 (464)
T KOG3764|consen 453 L 453 (464)
T ss_pred H
Confidence 3
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=214.31 Aligned_cols=328 Identities=12% Similarity=0.076 Sum_probs=219.1
Q ss_pred cccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHhhhhhHHHHHHHHHHh---
Q 011388 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISFS--- 135 (487)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~~~~~~~~~~--- 135 (487)
.....++.+|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred CchhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34566788999999999999999999766 555555 99999999998 89886 567888888887777777
Q ss_pred cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h--------hHHHH
Q 011388 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLA 203 (487)
Q Consensus 136 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~--------wr~~f 203 (487)
.+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+ + ||..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 45566777888889999999999999999999999999999999999999999999888655 6 99999
Q ss_pred HhhhHHHHHHHhhhhc-cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccch
Q 011388 204 VLGVLPCTLLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (487)
++.++..++..+..++ .||+++. +++.+ +++++.+..++++++++..+
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEPQED---ASVPK----------------------------PLTQAVLKPIREFFQRKNMI 209 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcc---cccch----------------------------hHHHHHHHHHHHHHHhcCch
Confidence 9988877766555443 5664210 00000 00001122455666665422
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchhH--HHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
..........+. .........+.+.+.++.|++..+. .....+ +..+++.++++++.||+|+|+.+..+.++..++
T Consensus 210 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 210 QALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222222222222 2223445566777777778876663 233333 567899999999999999999888777776665
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 431 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 431 (487)
..++.+........+.+ ....+......++...+.+ ...+...++..|.+|+++||+.+|+.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 289 NAGFVWLASNGHHDGIT----FPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcCcccccc----cchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 55444321111000000 0011222222222222222 2345566999999999999999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=245.35 Aligned_cols=331 Identities=12% Similarity=0.007 Sum_probs=226.3
Q ss_pred chhHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH---HHhcChhHHHHH
Q 011388 70 SPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMG 144 (487)
Q Consensus 70 ~~~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 144 (487)
..+.+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ..+++++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 344556666676654 447999999999999999999999999999999999887665555443 445789999999
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-h------------hHHHHHhhh-HHH
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGV-LPC 210 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-~------------wr~~f~~~~-~~~ 210 (487)
|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+.+++++ . |++.+.+.. ...
T Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766 2 233333333 333
Q ss_pred HHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHH
Q 011388 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (487)
Q Consensus 211 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (487)
++.++..+.+||+|+....+.+.+ .....+.....++.+++++..+..++...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 190 VLGLIFAYRLPKVPAAAPEVFDKK--------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred HHHHHHHhcCcCCCCCCccccccc--------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334445556787764211100000 000001112345556666655544443333
Q ss_pred HHHHHhhchhhHHhhHHHHHH-hcCCCch-h--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 291 LVLQQLSGINGVLFYSSNIFA-NAGISSS-N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
..+. ......+.|.++. ..|.+.. . .......++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 244 ~~~~----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 244 FWFI----SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHH----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 3332 2233344455554 4577666 3 56666778889999999999999999888777776666665555432
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
. ..+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+..
T Consensus 320 ~---------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 320 P---------------SLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred h---------------hHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122233333333333322 33445888899999999999999999999999888888776654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=227.15 Aligned_cols=375 Identities=16% Similarity=0.157 Sum_probs=253.8
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHH-H
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG-R 145 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r 145 (487)
..++...+.++++++.+.++++|+.++....+.+..|+.+.+.||||.|++.++|.++.+++.++.++++++|++++. -
T Consensus 63 ~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~g 142 (509)
T KOG2504|consen 63 NSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFG 142 (509)
T ss_pred heehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344467889999999999999999999999999999999999999999999999999999999999999999988875 5
Q ss_pred HHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhc-c
Q 011388 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF-I 220 (487)
Q Consensus 146 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~-~ 220 (487)
++.|+|.|..+.....++..+++ |+|+.+.|+..++.++|.++-|.+...+ |||+.+++.+.+.+-..+.... -
T Consensus 143 vi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 143 VIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 88899999999999999998885 7799999999999999999888877666 9998888766665555444333 3
Q ss_pred CCChHHHHhcCChHHHHHHHHHH-----------hC-CChhhh----HHHHHHHHHhhhcc--chhhhh---HHHHhhcc
Q 011388 221 PESPRWLAKMGMTEDFESSLQVL-----------RG-FDTDIS----IEVNEIKRSVASSS--RRTAIR---FAELKRKR 279 (487)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~----~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~ 279 (487)
|.+++.... .++..+..... .. .+.... .+.+..++..++.. ..+... ..++++++
T Consensus 222 p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~ 298 (509)
T KOG2504|consen 222 PLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP 298 (509)
T ss_pred CCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCc
Confidence 322221000 00000000000 00 000000 00001111111001 111111 24667775
Q ss_pred cchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch--HHHHHHHHH
Q 011388 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSG 355 (487)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~ 355 (487)
. ++.+.+...+...++.....+++.+.++.++++.. ....+.++..++++++.|++.|+...+ ....++.+.
T Consensus 299 ~----fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~ 374 (509)
T KOG2504|consen 299 K----FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI 374 (509)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 5 44444444444455677788889988888888776 677778999999999999999998743 333444444
Q ss_pred HHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHH
Q 011388 356 MAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSW 435 (487)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 435 (487)
.+++.....+. . .+..+....++.+........+....+.|+.+.+.-..+.|+...+..++..
T Consensus 375 ~gl~~~~~p~~---~-------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 375 AGLARLFLPFA---T-------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHHh---c-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence 44444333322 1 1112222222222222222344446888999999999999999999999999
Q ss_pred HHHHHhhhHhh-hh-cchhhHHHHHHHHHHHH
Q 011388 436 IVTMTANFLLD-WS-SGGTFLIYGIVCAFTVA 465 (487)
Q Consensus 436 i~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~ 465 (487)
+||++.|.+.| .+ |...+...+...+++..
T Consensus 439 ~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~ 470 (509)
T KOG2504|consen 439 VGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV 470 (509)
T ss_pred cCcccceeeeeccCCeeeehhhcChHHHHHHH
Confidence 99999999999 44 55555555555555543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=245.69 Aligned_cols=354 Identities=14% Similarity=0.033 Sum_probs=232.4
Q ss_pred HHHhhcCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh---hhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 75 EIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI---AAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 75 ~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
.+.++.+.+. ...++..+++.++++++++++|+++||+|||+++.. +.++..+..+.+...+|+++++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555554443 347889999999999999999999999999998643 333333333444455899999999999999
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCCChHH
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (487)
+.+...|+..+++.+++++++|++++++.+++.++|.++||.+++++ +|++.|+..++..++.++..+++|+++.-
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999999999999999999999999999999887 89999866666666666666667765420
Q ss_pred HHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhH
Q 011388 227 LAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (487)
.++...+ ....+.....++.+.+++.++...+...+..+. ...+..+.
T Consensus 201 --~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 248 (1140)
T PRK06814 201 --APDLKID--------------------------RNIIRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQL 248 (1140)
T ss_pred --CCCCeec--------------------------cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHh
Confidence 0000000 000001122456666766655555444443332 23444566
Q ss_pred HHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-----
Q 011388 307 SNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR----- 378 (487)
Q Consensus 307 ~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 378 (487)
|.+.++ .|.+... ......+++.+++.++.+++.|+..+++.+..+.++.+++.+.+.+....... +....
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 327 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPA-EPAQLKSILV 327 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccc-ccccccchhh
Confidence 776665 4666554 66677788999999999999988777666555554444444333321000000 00000
Q ss_pred -chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhhHH
Q 011388 379 -FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLI 455 (487)
Q Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~~~ 455 (487)
......+...+..++++.+.+.. .+...++..+..|++.+|+++|+.++...++..+++.+.+.+.+ .+....+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 328 FLSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 00001122333333333333322 33455889999999999999999999999999999999999986 333333444
Q ss_pred HHHHHHH
Q 011388 456 YGIVCAF 462 (487)
Q Consensus 456 ~~~~~~~ 462 (487)
.+.+.++
T Consensus 407 ~~~~~~~ 413 (1140)
T PRK06814 407 IALANLI 413 (1140)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=215.63 Aligned_cols=389 Identities=11% Similarity=0.052 Sum_probs=231.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhhHHHHHHHHHHhcChhH-HHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLE 148 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~ 148 (487)
.....+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||++.++.++++++++.++++++... ++++|.++
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34456788899999999999999999999999999999999 99999999999999999999999887554 55899999
Q ss_pred HHhhhhcchhHHHHHHhhCCcC--ccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCC
Q 011388 149 GFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (487)
Q Consensus 149 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 222 (487)
|+|.|...|...+++.|.+|++ +|+++++++.++.++|.++||.+++++ |||+.|++.++..++.++.+...++
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~ 195 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRG 195 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcch
Confidence 9999999999999999999877 457789999999999999998888776 9999999876544443433333332
Q ss_pred ChHHHHhc--CChHHHHHHH-------------HHHhCCChhhhHHHHH---HHH--HhhhccchhhhhHHHHhhcccch
Q 011388 223 SPRWLAKM--GMTEDFESSL-------------QVLRGFDTDISIEVNE---IKR--SVASSSRRTAIRFAELKRKRYWF 282 (487)
Q Consensus 223 ~p~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 282 (487)
..+....+ ++..+..... ................ ... -..++.+. .+.+|++.+.
T Consensus 196 ~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r~~~ 270 (489)
T PRK10207 196 MVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL-----DKTGRNKMFV 270 (489)
T ss_pred hhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHH
Confidence 21100000 0001110100 0000000000000000 000 00000000 0233333322
Q ss_pred hHHHH--HHHHHHHHhhchhhHHhhHHHHHHh--cCCC-chhHHHHHHHHHHHHHHhHHHHHhhhccchH-------HHH
Q 011388 283 PLMIG--IGLLVLQQLSGINGVLFYSSNIFAN--AGIS-SSNVATFGLGVVQVVATGVNTWLMDKAGRRL-------LLL 350 (487)
Q Consensus 283 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~ 350 (487)
...+. ..+.+.........++.+.+..... .|+. +.........+..++..++.+++.||+++|+ .+.
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~ 350 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 21111 1122222222222333333221111 1222 1123344455667678888899999999886 356
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHH
Q 011388 351 ISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLAN 430 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 430 (487)
.+.++.+++++.+..........+.+ ...++.+....+.+.+... ..|....++.+..|++.++.++|+.+...
T Consensus 351 ~G~~l~~~~~~~~~~~~~~~~~~~~~-----~s~~~~i~~~~l~g~Ge~~-~~~~g~~~~~~~aP~~~~g~~~g~~~l~~ 424 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAGMWFADAQGL-----TSPWFIVLVYLFQSLGELF-ISALGLAMIAALVPQHLMGFILGMWFLTQ 424 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc-----cCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 67777666665543321111110001 1122233333333444333 34565688888999999999999999999
Q ss_pred HHHHHHHHHHhhhHhh-----------hhcchhhHHHHHHHHHHHHHHHHh
Q 011388 431 WLVSWIVTMTANFLLD-----------WSSGGTFLIYGIVCAFTVAFVSLW 470 (487)
Q Consensus 431 ~~g~~i~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
.+|+.++..+.+.... ..+.+.|...++.++++.++....
T Consensus 425 ~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 425 AAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988865521 113344555665555555554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-25 Score=191.92 Aligned_cols=359 Identities=19% Similarity=0.181 Sum_probs=261.9
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
+..+..+.+..+.-.-..+..+|+++++++|+|+|.+..|+++++..+...+.+++..++++|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444556666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh----h-hhHHHH
Q 011388 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-NWRVLA 203 (487)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----~-~wr~~f 203 (487)
.++-... +.+.++.+-.+.|.|.+...+..+.++.+.+| |+-+..++++.+..++|..+++.+.-. . +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 88899999999999999999999999999997 567999999999999988877655543 3 799988
Q ss_pred HhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchh
Q 011388 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (487)
.+-+.+++++++.++--...++ ....+.+..+...+++++.-
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~------------------------------------~~~~~~~~~~~~~vw~~~~a-- 210 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ------------------------------------AASIATKLVSVRKVWRSPLA-- 210 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc------------------------------------ccccccccccccccccCchh--
Confidence 8888888887766653211100 00111222233456777763
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASF 360 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 360 (487)
+.+.+++..+...++....|+|.++.+.|++..+ .......+..++.++....+.+|. ++|+........+.++.
T Consensus 211 --W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 211 --WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred --HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4444455555556788999999999999998777 667778899999999999999975 45666666666666666
Q ss_pred HHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhccc-CChhhhhhHhHHHHHHHHHHHHHHHH
Q 011388 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI-LPVNIKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
+.+.+... ..++.+ .++++.+.+ +..|+....+.+. -.++..+.-.|+.+..+++-.+.||.
T Consensus 289 ~G~~~~P~-------------~~~~lw---~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 289 VGLLLAPG-------------QLPILW---ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHhhh-------------hHHHHH---HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 66654311 111222 122222222 2234444444443 34556678889999999999999999
Q ss_pred HhhhHhh-hhc-chhhHHHHHHHHHHHHH
Q 011388 440 TANFLLD-WSS-GGTFLIYGIVCAFTVAF 466 (487)
Q Consensus 440 ~~g~~~~-~~~-~~~~~~~~~~~~~~~~~ 466 (487)
+.|++.| .+. ......++.+.++..+.
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999 333 23334444444443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=232.00 Aligned_cols=294 Identities=16% Similarity=0.183 Sum_probs=205.9
Q ss_pred HhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH
Q 011388 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (487)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 134 (487)
.++..+...+..+..++.++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 34455555667788888999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hc---------------------------------------------------ChhHHHHHHHHHHHhhhhcchhHHHHH
Q 011388 135 SK---------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYI 163 (487)
Q Consensus 135 ~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i 163 (487)
.+ .+..++++|+++|+|.+..++...+++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i 197 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYI 197 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhh
Confidence 63 245678899999999999999999999
Q ss_pred HhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHhhhHHHHHHHhhh
Q 011388 164 AEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 164 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--------------------------~wr~~f~~~~~~~~~~~~~~ 217 (487)
.|++|+++|+++++++..+..+|.++|+++++.+ +||..|++.+++.++..+.+
T Consensus 198 ~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 198 DDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred hccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654 16777888777776665555
Q ss_pred hccCCC-hHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHh
Q 011388 218 FFIPES-PRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (487)
Q Consensus 218 ~~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (487)
+++|++ |+... +.+.++..+ +.... ..+. .........++.....+.+++++.++...+..++ ..
T Consensus 278 ~~~p~~lp~~~~-~~~~~~~~~--~~~~~-~~~~------~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~----~~ 343 (633)
T TIGR00805 278 FFFPKALPKEGK-RVNVDVHET--EKLEK-SEDK------SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVI----DS 343 (633)
T ss_pred HhCccccCCccc-ccchhhhhh--hcccc-cccc------cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHH----HH
Confidence 666654 22100 000000000 00000 0000 0000000111223456677887764444333333 33
Q ss_pred hchhhHHhhHHHHHHh-cCCCchh--HHHHHHHH-HHHHHHhHHHHHhhhcc--chHHHHHHHHHHHHHHHH
Q 011388 297 SGINGVLFYSSNIFAN-AGISSSN--VATFGLGV-VQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFL 362 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~ 362 (487)
........|+|.++++ .|+++.. .......+ +.+++.+++|+++||++ .|+.+..+.....++.++
T Consensus 344 ~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 344 LAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3455677788888875 5776655 33333333 56789999999999988 456666666555555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=207.64 Aligned_cols=357 Identities=13% Similarity=0.115 Sum_probs=229.8
Q ss_pred ccccchhHHHHHhhcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHH
Q 011388 66 CGYSSPTQAEIISDLKLTISE-FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (487)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (487)
+...+.+.|.+.+|+|+|.+| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHh---hhHHHHHHHhhhh
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVL---GVLPCTLLIPGLF 218 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~---~~~~~~~~~~~~~ 218 (487)
|++.|++.|+.. +...++..|+|+++|+++.++..++..+|.+++++++..+ |||+.+.+ ......++++..+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999988776 89866544 3344445566777
Q ss_pred ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHH-HHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhh
Q 011388 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE-IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (487)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
++|..++.+.-+++.+.......+.....++...+..+ .+......-..-..++++..+++. ++-..+.+....+
T Consensus 201 ~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~----vl~WSlWwa~a~~ 276 (511)
T TIGR00806 201 FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ----LLLWSLWWVFNSA 276 (511)
T ss_pred hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc----hhhhhHHHHHHhh
Confidence 88866554332221110000000000000000000000 000000000111223333444443 2222333334444
Q ss_pred chhhHHhhHHHHHHhcCCCchh---HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 298 GINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
+++-+..|...+.++..-++.. ..-.+..+.+.+..+..|++-.++.+-..+.++.....-+.+++...
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-------- 348 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-------- 348 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh--------
Confidence 5667777877777665332221 44555566777888889998666644323333222222222222111
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
+....|.......++...+.... ++...-+++....+.-|..+|+.++..-+-+.+-..+.
T Consensus 349 -----~t~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 349 -----QSHDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred -----cccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 11233455555555555555443 33334555556666678999999888887777766554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=210.10 Aligned_cols=351 Identities=14% Similarity=0.137 Sum_probs=248.3
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-----cChhHH
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFL 141 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l 141 (487)
.+....++.+..++.-|+..++++.++..+...+.++++|.++||++|||+++.+.++.++..+..++. .+.+.+
T Consensus 27 ~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~L 106 (524)
T PF05977_consen 27 WMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLL 106 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence 444456677777777799999999999999999999999999999999999999998877665555442 477899
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 217 (487)
++.-++.|++.+...|+..+++.|.+|+++...+.++.+...++..++||.+++.+ |-.+.|.+.++..++.+..+
T Consensus 107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 107 LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 77788888877655554444
Q ss_pred hccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhh
Q 011388 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (487)
Q Consensus 218 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
..++..++ .++.++ ++-.+.-+..++-+.+++..+..+....+..+.
T Consensus 187 ~~~~~~~~--~~~~~~----------------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~--- 233 (524)
T PF05977_consen 187 LRWKPPPP--PSSLPR----------------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF--- 233 (524)
T ss_pred HHcccccc--ccccch----------------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh---
Confidence 44433211 000000 000111222344444455444333322222221
Q ss_pred chhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 298 GINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
.......+|.+.++ .+.++.. +.....+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++.
T Consensus 234 -~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------- 304 (524)
T PF05977_consen 234 -ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------- 304 (524)
T ss_pred -hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--------
Confidence 12233345666554 4555444 66777899999999999999999999888888877777766666643
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhh
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTF 453 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~ 453 (487)
...+.....+++.+.+... ......+...+..|++.||++++++++....+..+|..+.|.+.+ .+....+
T Consensus 305 -------~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al 376 (524)
T PF05977_consen 305 -------PSFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTAL 376 (524)
T ss_pred -------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 1223334444444443333 233345788889999999999999999999999999999999999 5555555
Q ss_pred HHHHHHHHHHHHHH
Q 011388 454 LIYGIVCAFTVAFV 467 (487)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (487)
.+.+++.+++.++.
T Consensus 377 ~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 377 LIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=199.08 Aligned_cols=330 Identities=15% Similarity=0.147 Sum_probs=203.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHH
Q 011388 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (487)
Q Consensus 83 s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 162 (487)
+..-.|++.|.|.+.+.+.++.+|.++||||||+++.+|++..++..++.+.++|+..++++|++.|+..| ......++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 44557999999999999999999999999999999999999999999999999999777778999999885 56677899
Q ss_pred HHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhhhh------HHHHHh----hhHHHHH-HHhhhhccCCChHHHHhcC
Q 011388 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNW------RVLAVL----GVLPCTL-LIPGLFFIPESPRWLAKMG 231 (487)
Q Consensus 163 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~w------r~~f~~----~~~~~~~-~~~~~~~~~e~p~~~~~~~ 231 (487)
++|.+++|+|+++++..+..+++|.++||.+|+++.- +.+|.. ..+.... .....+++||+-+...+++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~ 224 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRND 224 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcc
Confidence 9999999999999999999999999999999998822 122222 2222222 3445677899832111110
Q ss_pred ChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchh---HHHHHHHHHHHHhhchhhHHhhHHH
Q 011388 232 MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP---LMIGIGLLVLQQLSGINGVLFYSSN 308 (487)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (487)
...+..+.. ++.++..+......-...+++.... .+-.+.+..+.....+....++.+.
T Consensus 225 ~~~~~~~~~------------------~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 225 EHSTLQEAA------------------DDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred cccchhhhh------------------hhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 000000000 0000000000000111222221111 1111111111111112223333333
Q ss_pred HH-HhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHH
Q 011388 309 IF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSIL 383 (487)
Q Consensus 309 ~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (487)
+. +..|+++.+ ......++.+.+......+..+|.+ .+..+......+.-.++++... ..
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---------------~~ 351 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---------------RT 351 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---------------cc
Confidence 31 345777666 4445556666666666666666665 4444444444444333333321 11
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh
Q 011388 384 GILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 447 (487)
+.....+..+..+.... ..+-...+.....|++.||+++|+......++.++||.+.|.+..|
T Consensus 352 ~~~l~~~s~l~sf~~A~-~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 352 PVVLYLGSTLKSFSTAS-VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred chhhhHHHHHHHHHHHH-hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 12222222222222222 2233457888899999999999999999999999999999998873
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=211.88 Aligned_cols=398 Identities=12% Similarity=0.042 Sum_probs=238.2
Q ss_pred cccccccchhHHHH-Hhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhhHHHHHHHHHHhcCh
Q 011388 63 GFTCGYSSPTQAEI-ISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDS 138 (487)
Q Consensus 63 ~~~~~~~~~~~~~i-~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~ 138 (487)
.+......+.+|.+ .++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.++++++
T Consensus 23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~ 102 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP 102 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence 34444455666665 445 89999999999999999999999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCc---cchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHH
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~ 211 (487)
+.++++|++.|+|.|...+...++++|++|+++ |+++.++.+.+.++|.++||.+++.+ +||+.|++.++..+
T Consensus 103 ~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~ 182 (475)
T TIGR00924 103 DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMV 182 (475)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 88899999999999999999998876 89999998776555
Q ss_pred HHHhhhhccC----CChHHHHhcCChHHHHHHHHH--------------HhCCChhhhHHHHH---H--HHHhhhccchh
Q 011388 212 LLIPGLFFIP----ESPRWLAKMGMTEDFESSLQV--------------LRGFDTDISIEVNE---I--KRSVASSSRRT 268 (487)
Q Consensus 212 ~~~~~~~~~~----e~p~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~--~~~~~~~~~~~ 268 (487)
+.++..++.+ +.|+. .++.+.++....... ....+......... . .........++
T Consensus 183 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (475)
T TIGR00924 183 IGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP 261 (475)
T ss_pred HHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443333322 22210 000001110000000 00000000000000 0 00000000000
Q ss_pred hhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cC-----CC-chhHHHHHHHHHHHHHHhHHHH---
Q 011388 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AG-----IS-SSNVATFGLGVVQVVATGVNTW--- 338 (487)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-----~~-~~~~~~~~~~~~~~~~~~~~g~--- 338 (487)
..+..+-.+......+++...+.+.. +.-.....+.+.++ .+ ++ +......+..+..++..++..+
T Consensus 262 ~~~~~~~~~~~~~l~l~~~~~~~~~~----~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~ 337 (475)
T TIGR00924 262 RLDAVARNKMYAYIVLFLEAVVFWVL----YAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT 337 (475)
T ss_pred cCCHHHHhHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 00000001111111122222222222 22222222332222 11 11 1225555566666666655444
Q ss_pred -Hhhh-ccchHHH--HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccC
Q 011388 339 -LMDK-AGRRLLL--LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL 414 (487)
Q Consensus 339 -l~d~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (487)
+.|| .+.+... .++.++.++++..+.+....... +. ....++.+....+.+.+. ....|...++..+..
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~---~~---~~s~~~~i~~~~~~~~ge-~~~~p~~~~~~~~~a 410 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA---GG---LTSPWFMVLIYLFQTLGE-LMISPLGLSWWTKIA 410 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CC---ccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhC
Confidence 3333 2223333 56777777777666654221110 00 112233344444444444 344577779999999
Q ss_pred ChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 415 PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 415 p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
|++.||+.+|+......+|..+++.+.....+ .+....+...++++++..++.++..|
T Consensus 411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766 44555566666666666555554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=213.99 Aligned_cols=324 Identities=17% Similarity=0.147 Sum_probs=218.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----hch-hHHHHhhhhhHHHHHHHHHHhcC------hhH
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGR-KGSLMIAAVPNIIGWLIISFSKD------SSF 140 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~ 140 (487)
..+.+.+++|+++.++|++.++..+..++.+|+.|+++|| +|| |+.++.+....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3556788899999999999999999999999999999997 677 45677888889988888887765 346
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhC-CcCccchhhHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHhhhH
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL-----------FVNWRVLAVLGVL 208 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~-----------~~~wr~~f~~~~~ 208 (487)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.. ..+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 677888999998888888888888987 4688999999988888887665543321 2279999888877
Q ss_pred HHHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHH
Q 011388 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (487)
Q Consensus 209 ~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (487)
+.++..+ ..+..||.++. +.+ .++++.+..+.++++++++.++.....
T Consensus 182 l~~~~~~~~~~~~~e~~~~-----~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE-----IPK--------------------------NIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHcCCEecCCC-----CCc--------------------------ccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 6666543 44556765310 000 000011123345667777765554444
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
.++..... .....+.+.+.+.. + ++.. .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.
T Consensus 231 ~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 231 YLFYNLAF----NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHH----HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 33333322 22222233333221 2 1222 444555788889999999999999999998888777766655544
Q ss_pred HHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------hhhhhhHhHHHHHHHHHHHHHH
Q 011388 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~ 437 (487)
+.. . ..+...+...+.+.+.+. ..+..+++..|..+ ++.+|.+.|+.++...+|..++
T Consensus 306 ~~~---~-----------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 306 FAG---S-----------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred Hcc---h-----------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 321 0 111222222222233222 23455677777654 4567999999999999999999
Q ss_pred HHHhhhHhh
Q 011388 438 TMTANFLLD 446 (487)
Q Consensus 438 ~~~~g~~~~ 446 (487)
+.+.|.+.+
T Consensus 371 ~~i~g~ll~ 379 (437)
T TIGR00792 371 GFLVGLILG 379 (437)
T ss_pred HHHHHHHHH
Confidence 999999987
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=205.03 Aligned_cols=381 Identities=14% Similarity=0.116 Sum_probs=231.6
Q ss_pred hhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHH
Q 011388 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (487)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~ 126 (487)
+.+..+..+++......+.....+.+++.+.+|+|- .+...|+.+...++.+++.++.|+++|.||||.+++.+.++..
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 334444444554444445555556778999999994 5788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 011388 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (487)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~ 202 (487)
+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||.
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 9999999999999999999999999776654 566689999999998887777666555555666666554 89999
Q ss_pred HHhhhHHHHHHHhhhhccCCChHHHHhcC---ChHHHHHHHHHHhCC-----------------Ch-h---hhHHHHH--
Q 011388 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMG---MTEDFESSLQVLRGF-----------------DT-D---ISIEVNE-- 256 (487)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~---~~~~~~~~~~~~~~~-----------------~~-~---~~~~~~~-- 256 (487)
|++.++...+.++..++...+|++...++ .+.+..+.++.+... +. . .......
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 99988876665443332222233222222 222333334433110 00 0 0000000
Q ss_pred -------HHHHhhhc-cchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCc-----hhHHH
Q 011388 257 -------IKRSVASS-SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISS-----SNVAT 322 (487)
Q Consensus 257 -------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-----~~~~~ 322 (487)
.---.|.. ..+++.-..+++++++. +.+..+..+.....++....+.|.... -.+.+. .....
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~---~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s 355 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRG---FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWIS 355 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhh
Confidence 00001111 11233344556665321 122112222222223333333333332 223322 22555
Q ss_pred HHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcC
Q 011388 323 FGLGVVQVVATGVNTWLMDKAGRRLLL-LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLG 401 (487)
Q Consensus 323 ~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (487)
...+++..++..+.+.+..+++|-|.. +++...+.+++.+++.... ++. .....+ ..+.+.+.+..
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-------~n~----~~~i~~--~~l~g~giG~~ 422 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-------DNK----NAAIAF--LVLAGFGIGGI 422 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC-------CCc----chHHHH--HHHHHHhHHHH
Confidence 667788888889999999888775554 4555555544444443211 111 111111 22222222222
Q ss_pred cccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 402 VGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
.. .......-..|++.-+++.|+...++.+|+.++..++..+..
T Consensus 423 ~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 423 LV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 223555667899999999999999999999999999876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=200.50 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=244.3
Q ss_pred chhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh------cChhHHHH
Q 011388 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------KDSSFLFM 143 (487)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~ 143 (487)
+...|.+.+++|+|..+++++.++. .....++++.|++.||+|||+++.++.+++++++++++++ ++++.+.+
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 3567789999999999999998874 4556788899999999999999999999999999999998 68999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHH-HHHhhhhh--hhHHHHHhhhHHHHHH-Hhhhhc
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV--NWRVLAVLGVLPCTLL-IPGLFF 219 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~--~wr~~f~~~~~~~~~~-~~~~~~ 219 (487)
.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++...++ +|+..|++.++..++. ++...+
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999996 78999999999999999975 55555555 8888777766655554 444444
Q ss_pred c--CCChHHHHhcCChHHHHHHHHHHhCC--------------------------------------Chhh---------
Q 011388 220 I--PESPRWLAKMGMTEDFESSLQVLRGF--------------------------------------DTDI--------- 250 (487)
Q Consensus 220 ~--~e~p~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~--------- 250 (487)
+ |+.|++..++++.++.++..++.++. +...
T Consensus 205 vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~ 284 (591)
T PTZ00207 205 MRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVI 284 (591)
T ss_pred eeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4 44444443332222222221111110 0000
Q ss_pred -----------------------hHHHHHHH--H-H---hhhc--------c---chhhhhHHHHhhcccchhHHHHHHH
Q 011388 251 -----------------------SIEVNEIK--R-S---VASS--------S---RRTAIRFAELKRKRYWFPLMIGIGL 290 (487)
Q Consensus 251 -----------------------~~~~~~~~--~-~---~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (487)
+.+.+..+ + . .+++ + .....++.+.+++..+ |.++.
T Consensus 285 ~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~----Wll~~ 360 (591)
T PTZ00207 285 VLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARL----WCLLW 360 (591)
T ss_pred HHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhH----HHHHH
Confidence 00000000 0 0 0000 0 0011144555555554 44444
Q ss_pred HHHHHhhchhhHHhhHHHHHHhc-CC-Cch--h-HHHHHHHHHHHHHHhHHHHHhhhccchH---------HHHHHHHHH
Q 011388 291 LVLQQLSGINGVLFYSSNIFANA-GI-SSS--N-VATFGLGVVQVVATGVNTWLMDKAGRRL---------LLLISSSGM 356 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~--~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---------~~~~~~~~~ 356 (487)
.+++..+........+.++.+.. |. .+. . ....+.++.+.+|++..|++.....+|+ .+.+..+ +
T Consensus 361 ~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~ 439 (591)
T PTZ00207 361 SIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-C 439 (591)
T ss_pred HHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-H
Confidence 45555555556666777777777 66 223 2 2567889999999999998873322222 2222223 4
Q ss_pred HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHH
Q 011388 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 436 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 436 (487)
.++.+++.+... .....+...+.+.+++..+ ++.....+|++. ++-|+-.-+.....-+|+.+
T Consensus 440 ~~~~lll~~~~p---------------~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~ 502 (591)
T PTZ00207 440 IITMLTLFLTLP---------------KAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIF 502 (591)
T ss_pred HHHHHHHHHHCC---------------ccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHH
Confidence 444444443311 0123344444444444333 455589999999 78888888888888888887
Q ss_pred H-HHHhhhHhhhh--------------cchhhHHHHHHHHHHHHHHHHhc
Q 011388 437 V-TMTANFLLDWS--------------SGGTFLIYGIVCAFTVAFVSLWV 471 (487)
Q Consensus 437 ~-~~~~g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
. -.++|.++|.. +..++.+.++++.++.+....+.
T Consensus 503 ~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 503 LNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 6 66888888711 23468888888888877655544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-23 Score=196.72 Aligned_cols=362 Identities=11% Similarity=0.029 Sum_probs=227.5
Q ss_pred HHhhhcccccccccccchhHHHHHhhcCCChhhHHHH--HHHHHHHHHHHHHHHHH-HHhhhchhHHHHhhhhh-HHHHH
Q 011388 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF--GSLANVGAMVGAIASGQ-IAEYIGRKGSLMIAAVP-NIIGW 129 (487)
Q Consensus 54 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~g~-l~d~~Grr~~~~~~~~~-~~~~~ 129 (487)
.+...++.+|+..+...|.+|.+.+|.|.|.+++|++ .+++.+...+.+++.+. ..||+||||..+++..+ .+...
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 3444557778888899999999999999999999997 46778888888888854 79999999887665533 22222
Q ss_pred HHHH-H--hcC-hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh----hhhHH
Q 011388 130 LIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWRV 201 (487)
Q Consensus 130 ~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----~~wr~ 201 (487)
...+ + .++ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+. .|||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~ 164 (390)
T TIGR02718 85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP 164 (390)
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 2222 1 222 33445556666777778888888888899988888888888888888999988865544 49999
Q ss_pred HHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccc
Q 011388 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (487)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (487)
.|++.++..++..+..++++|+++. +++ +++++..+.+++++++..
T Consensus 165 ~f~~~a~l~~~~~~~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~l~~~~~ 210 (390)
T TIGR02718 165 AFLLVACVPLASLVCVLWLKDRAVA---SPE-------------------------------APLARRASLFRFFRRPLA 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcC---ccc-------------------------------cchhhHHHHHHHHcCcCH
Confidence 9999887776655554554443210 000 000112235567777665
Q ss_pred hhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 011388 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (487)
+......++.... ......+.+.++++.|+++.. ......+ ...+++.++.|++.||+|+|+.+..+.....+
T Consensus 211 ~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 211 WSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5444433333322 223334556677778888776 3333333 45667889999999999999988876655433
Q ss_pred HHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCCh-hhhhhHhHHHHHHHHHHHHHH
Q 011388 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV-NIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~i~ 437 (487)
........ ..... . ...........+.....+.. .+.......+..++ +.+++.+++.+...++|..++
T Consensus 287 ~~~~~~~~-~~~~~-~-------~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g 356 (390)
T TIGR02718 287 LALLWFAQ-AAFWL-A-------PGIAVAWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIA 356 (390)
T ss_pred HHHHHHHH-HHccc-C-------CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 22222111 11000 0 00111111111111111111 12233444455554 789999999999999999999
Q ss_pred HHHhhhHhh-hhcchhhHHHHHHHHHH
Q 011388 438 TMTANFLLD-WSSGGTFLIYGIVCAFT 463 (487)
Q Consensus 438 ~~~~g~~~~-~~~~~~~~~~~~~~~~~ 463 (487)
|.+.|.+.| .++...+...+++.+++
T Consensus 357 ~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 357 SSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 999999999 55545555555544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=192.30 Aligned_cols=384 Identities=14% Similarity=0.157 Sum_probs=241.2
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHh-hhhhHHHHHHHHHHhcCh
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMI-AAVPNIIGWLIISFSKDS 138 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~~~~-~~~~~~~~~~~~~~~~~~ 138 (487)
+..+...+.++.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.+++ +.....++.++.+++++.
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 44455566777788899999999999999999999999999999999 5999999887 466677777788887765
Q ss_pred h-----------------HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCcc--chhhHHHHHHHHHHHHHHHHhhhhh--
Q 011388 139 S-----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (487)
Q Consensus 139 ~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~-- 197 (487)
. .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 223333344557778888899999999998865 5789999999999999999888653
Q ss_pred -----------------hhHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHH
Q 011388 198 -----------------NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (487)
Q Consensus 198 -----------------~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (487)
+.|+.|++.++..++. ++..+..+|.|....++.++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------------------------ 233 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------------------------ 233 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------------------------
Confidence 4567888877766665 4455668887531100000000
Q ss_pred HhhhccchhhhhHHHHhhc-----ccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc--CCC--------ch----hH
Q 011388 260 SVASSSRRTAIRFAELKRK-----RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GIS--------SS----NV 320 (487)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~--------~~----~~ 320 (487)
.++.++......++++++. +..+...+.-++.++ +...+..|.+.+..+. +.+ +. .+
T Consensus 234 ~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~----a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~ 309 (477)
T TIGR01301 234 AAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI----AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF 309 (477)
T ss_pred cccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence 0000000111122333322 223333333333333 3334444444444321 111 11 13
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCCccchh---HHHHHHHHHHHH
Q 011388 321 ATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFFLEGF---VSEDSRFYS---ILGILSLVGLVT 393 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~ 393 (487)
......+...+.+++..++.+|+|+ |+....+.++.++++....+.....+. .+.++..+. ...+..++.+..
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 4455566666777888889999985 566577777777777766654321110 000000000 001333444444
Q ss_pred HHHHHhcCcccchhhhhcccCCh--hhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh--cchhhHHHHHHHHHHHHHHH
Q 011388 394 VVISFSLGVGAIPWVIMSEILPV--NIKSLAGSVATLANWLVSWIVTMTANFLLD-WS--SGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~--~~~~~~~~~~~~~~~~~~~~ 468 (487)
.++.+.. ...+.++++++..++ +..|..+|+.|.+..+.+++.....|.+.+ .+ ....+.+.++..++++++..
T Consensus 390 ~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 390 LGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred hhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 4444433 345667899998884 456999999999999999999999988666 22 33445556666667777777
Q ss_pred HhcccCCC
Q 011388 469 LWVPETKG 476 (487)
Q Consensus 469 ~~~~~~~~ 476 (487)
+.+|+++.
T Consensus 469 ~~~~~~~~ 476 (477)
T TIGR01301 469 ILLPRPRV 476 (477)
T ss_pred HhCCCCCC
Confidence 77887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=192.91 Aligned_cols=381 Identities=12% Similarity=0.097 Sum_probs=217.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhhHHHHHHHHHHhc-ChhHHHHHHHHHHH
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGF 150 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~ 150 (487)
...+.+++|++.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.++++|+++|+
T Consensus 45 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi 124 (500)
T PRK09584 45 AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV 124 (500)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445678999999999999988887777777899999999 5999999999999999999999875 56677789999999
Q ss_pred hhhhcchhHHHHHHhhCCcCc--cchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh----cc
Q 011388 151 GVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF----FI 220 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~----~~ 220 (487)
|.|...+...+++.|++|+++ |..++++++++.++|..++|.+++++ |||+.|++.++..++.++... .+
T Consensus 125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~ 204 (500)
T PRK09584 125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWV 204 (500)
T ss_pred hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 999999999999999998654 45678889999999999999998877 899999987765444433222 23
Q ss_pred CCChHHHHhcCChHHHHHHH-----------HHHhCCChhhhHHHHHH------HHHhhhccchhhhhHHHHhhcccchh
Q 011388 221 PESPRWLAKMGMTEDFESSL-----------QVLRGFDTDISIEVNEI------KRSVASSSRRTAIRFAELKRKRYWFP 283 (487)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (487)
+|.++. .++++.+...... ......+.+........ ........+ .++..+++...
T Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~- 277 (500)
T PRK09584 205 KQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFA-----MKGAARRKMIV- 277 (500)
T ss_pred ccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh-----cCHHHHHHHHH-
Confidence 332110 0000011000000 00000000000000000 000000000 00001111111
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHh-c-----CCC-chhHHHHHHHHHHHHHHhHH----HHHhhhccchHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFAN-A-----GIS-SSNVATFGLGVVQVVATGVN----TWLMDKAGRRLLLLIS 352 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~-~~~~~~~~~~~~~~~~~~~~----g~l~d~~~~~~~~~~~ 352 (487)
....++.....+..+.-...++..+..+ . |.. +......+..+..++..++. +++.+|.+..+.+.++
T Consensus 278 -~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 278 -AFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred -HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 1111111111111111122222211111 1 222 12244445555555555555 4555555555777788
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHH
Q 011388 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWL 432 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 432 (487)
+++.+++++.+.......+. +.. ...++.+....+.+ .......|....++.+..|++.||..+|+......+
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~----~~~--vs~~~~~~~~~l~~-~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFAND----AGI--VSVNWLIASYGLQS-IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCC----CCc--cCHHHHHHHHHHHH-HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 88888888887665432111 000 11122233333333 333445677778999999999999999988877777
Q ss_pred HHHHHHHHhhhHhh-----------hhcchhhHHHHHHHHHHHHHHH
Q 011388 433 VSWIVTMTANFLLD-----------WSSGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 433 g~~i~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
|..++..+.+.... .++...|...++++++.+++..
T Consensus 430 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 430 AALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777776653211 1234556556655554444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=179.17 Aligned_cols=365 Identities=16% Similarity=0.199 Sum_probs=238.9
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHhhhhhHHHHHHHHHHhcChhHHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (487)
+..+...|.++..-++.|.|..|+|.+.+...+...++++++|.++||++ +||++.++.++.++........++++.++
T Consensus 16 ~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44466778889999999999999999999999999999999999999986 68888888888888888888889999999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHhhCCcC--ccchhhHHHHHHHHHHHHH-HHHhhhhhhh---HHHHHhhhHHHHHHHhh
Q 011388 143 MGRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIML-AYLLGLFVNW---RVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 143 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~-~~~l~~~~~w---r~~f~~~~~~~~~~~~~ 216 (487)
+.-++..+......|...++..+...++ +-|+.-.+-+.++.++... +..+.+..++ .+.+++.+...++....
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~ 175 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF 175 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 9999999988889999999988887632 2244333333333333222 2223333322 24556655555555555
Q ss_pred hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHh
Q 011388 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (487)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (487)
.+.+|+.|+. ++ .+++.++....+..+++|+|....+++..++....
T Consensus 176 ~l~lp~~~~~---~~----------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~-- 222 (400)
T PF03825_consen 176 ALFLPKTPPK---RS----------------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS-- 222 (400)
T ss_pred HHhCCCCccc---cc----------------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH--
Confidence 5667877620 00 00011111222345678887755554444433332
Q ss_pred hchhhHHhhHHHHHHhcC-CCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011388 297 SGINGVLFYSSNIFANAG-ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
......|.+.++++.| .+... ....+..+..++.-...+++.+|+|.|+++.++....++=..+++.... +.
T Consensus 223 --~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~--~~- 297 (400)
T PF03825_consen 223 --HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD--PW- 297 (400)
T ss_pred --HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC--Cc-
Confidence 3445567777788877 44333 4455667788889999999999999999999888887777666664300 00
Q ss_pred CCCccchhHHHH-HHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHH-HHHHHHHHHHHhhhHhh-hhcc
Q 011388 374 SEDSRFYSILGI-LSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA-NWLVSWIVTMTANFLLD-WSSG 450 (487)
Q Consensus 374 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~~-~~~~ 450 (487)
+..+ .......+-+..++... .....++.+..|++.|+++.++++.. ..+|..+|..++|++.| .+..
T Consensus 298 --------~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 298 --------PFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred --------HHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 0000 11111122333333222 33448899999999999999998765 67999999999999999 3333
Q ss_pred h------hhHHHHHHHHHHHHHHHHhcccCC
Q 011388 451 G------TFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 451 ~------~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
. .+.+.+++.++..++.+++.||++
T Consensus 369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 369 GMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 2 233444444444444555555543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=181.92 Aligned_cols=324 Identities=13% Similarity=0.051 Sum_probs=204.9
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----hch-hHHHHhhhhhHHHHHHHHHHhcC------hhH
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGR-KGSLMIAAVPNIIGWLIISFSKD------SSF 140 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~ 140 (487)
....+.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++..+....++ ...
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4556788899999999999999999999999999999998 777 56666787888887766655554 345
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhC-CcCccchhhHHHHHHHHHHHHHHHHhh----hh-------hhhHHHHHhhhH
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----LF-------VNWRVLAVLGVL 208 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~----~~-------~~wr~~f~~~~~ 208 (487)
+++..++.+.+.......-.++..|+. ++++|++..++...+..+|..+++.+. .. .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666677777777777777789999988 457898887887777777766655432 22 167877776666
Q ss_pred HHHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHH
Q 011388 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (487)
Q Consensus 209 ~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (487)
+.++..+ ..+..+|.++. .++++.+...+.+++++++.++.....
T Consensus 192 i~~v~~~~~~~~~~e~~~~----------------------------------~~~~~~~~~~~~~~~~~n~~~~~l~~~ 237 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP----------------------------------EVDNSSSVWKDLKLLLGNSQWRIMFIF 237 (444)
T ss_pred HHHHHHHHHhCCeEEecCC----------------------------------CCcCCCCHHHHHHHHhCCchHHHHHHH
Confidence 5555433 33344543210 000112234456777888876665554
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHhcCCCchh-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
.++.............+|..+.+ +..+.. .......+..+++.++.+++.||+|+|+....+.+...++...+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 314 (444)
T PRK09669 238 NVVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI 314 (444)
T ss_pred HHHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 44333322111111222222221 211111 33334456677888899999999999998887765554333222211
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------hhhhhhHhHHHHHHHHHHHHHHHH
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
.. ...+...+...+.+.+.+ ...+..+++.+|..+ ++..|...|..++...+|.++++.
T Consensus 315 --~~-----------~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~ 380 (444)
T PRK09669 315 --PP-----------SNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA 380 (444)
T ss_pred --Cc-----------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 00 011222333333333333 334666788888775 233467789999999999999999
Q ss_pred HhhhHhh
Q 011388 440 TANFLLD 446 (487)
Q Consensus 440 ~~g~~~~ 446 (487)
+.|.+.+
T Consensus 381 i~g~ll~ 387 (444)
T PRK09669 381 VVGWILA 387 (444)
T ss_pred HHHHHHH
Confidence 9999988
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=166.66 Aligned_cols=390 Identities=14% Similarity=0.094 Sum_probs=264.4
Q ss_pred CCcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhh
Q 011388 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122 (487)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~ 122 (487)
+..+++|.++++.++-.+.+++..-.++++.......++ +.+..-|+.-+|++.+....+++-|+.||+|-|....++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 445678888888888888888888888888888888889 8888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhc------Chh--HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh
Q 011388 123 VPNIIGWLIISFSK------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 123 ~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
++.++|+.+-..+. .++ ....+..+.+.+.-.....-..+..-|+++++|..+..+-.++..+|.+++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999999887763 334 5668888888888777777678888899999999999999888888888887777
Q ss_pred hhh----------hhHH--HHHhhhHHHHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHh
Q 011388 195 LFV----------NWRV--LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV 261 (487)
Q Consensus 195 ~~~----------~wr~--~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (487)
..+ .|-. .|+.....+.+.++ ..+..++.|+.-.+ . ...
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~----------------------s~~- 248 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----A----------------------SQA- 248 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----h----------------------hHh-
Confidence 555 4653 34433333333322 22233332220000 0 000
Q ss_pred hhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCc--hhHHHHHHHHHHHHHHhHHHHH
Q 011388 262 ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWL 339 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~g~l 339 (487)
...+..-..+.+..++++.+....++..+... .++.+...+...+...|++. .........+++++++.+.|.+
T Consensus 249 ~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 249 ALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII 324 (480)
T ss_pred hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence 00022345667788888875555444444433 34455555554445557763 3377777888999999999999
Q ss_pred hhhccchH-HHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhh
Q 011388 340 MDKAGRRL-LLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI 418 (487)
Q Consensus 340 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (487)
.||.++-+ ...+......++...+........ ....+.......+.++.+..|+..-+..|..-|..
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence 99987644 333333333333211111111110 11233444455566777888988888899876777
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh----cchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 419 KSLAGSVATLANWLVSWIVTMTANFLLD-WS----SGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 419 ~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
-++..|+.+..+++-+.+-..+.+...+ .+ ....-+.....+++..++..++.++.+++
T Consensus 393 E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 393 EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 7899999999999999999999998887 33 22223444444555555555554444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=170.33 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=207.4
Q ss_pred chhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHHHHHHHHHHhc-ChhHHHHHHH
Q 011388 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRL 146 (487)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 146 (487)
...+|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++++..+ +...+.++..
T Consensus 29 ~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~ 108 (493)
T PRK15462 29 RALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLA 108 (493)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 344454 5667999999999999999999999999999999999 999999999999999988777643 2233455555
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcC--ccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhcc
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
+.++|.|...+...++++|.+|++ +|.+++++...+.++|..++|.+.+++ ||++.|.+.++..++.++..+..
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777788889999999875 689999999999999999999998887 89999998766444443333221
Q ss_pred CCChHHH---HhcCChHHHHH-HHH---HHhC-----CChh-hhHHH-HHHHH-----------HhhhccchhhhhHHHH
Q 011388 221 PESPRWL---AKMGMTEDFES-SLQ---VLRG-----FDTD-ISIEV-NEIKR-----------SVASSSRRTAIRFAEL 275 (487)
Q Consensus 221 ~e~p~~~---~~~~~~~~~~~-~~~---~~~~-----~~~~-~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~ 275 (487)
.+..... ..+..+++... ... .+.. .... ...+. ..... .....+ .++.+.+++
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~er~r~ 267 (493)
T PRK15462 189 NRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQRKEL 267 (493)
T ss_pred hhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHhhH
Confidence 1110000 00000000000 000 0000 0000 00000 00000 000000 000000000
Q ss_pred hhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh--cCCC-chhHHHHHHHHHHHHHHhHHHHHhhhccc--h----
Q 011388 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN--AGIS-SSNVATFGLGVVQVVATGVNTWLMDKAGR--R---- 346 (487)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~---- 346 (487)
.....+.+...+.+.........+..|.....+. .|+. +......+..+..++.+++..++=.|..| |
T Consensus 268 ---~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~ 344 (493)
T PRK15462 268 ---GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRI 344 (493)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 0111111222222222222223333333322211 1332 23355566677677777766666455422 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH
Q 011388 347 -LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV 425 (487)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 425 (487)
.-...+.++++++++.+.+....... + .. ...++ ++...++....-....|+..++++++.|++.+|..+|+
T Consensus 345 ~~Kfa~g~~~~g~~f~~l~~~~~~~~~---~-~~--~s~~w-l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 345 WGKFALGLGLMSAGFCILTLSARWSAM---Y-GH--SSLPL-MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---C-CC--cCHHH-HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence 12456777777777777665433221 0 00 12223 33333333444456679999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhhhH
Q 011388 426 ATLAN-WLVSWIVTMTANFL 444 (487)
Q Consensus 426 ~~~~~-~~g~~i~~~~~g~~ 444 (487)
..... .+|..++..+.+..
T Consensus 418 w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 418 YMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 86633 57777666666655
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=182.09 Aligned_cols=363 Identities=12% Similarity=0.007 Sum_probs=220.0
Q ss_pred hcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHhhhhhHH-HHHHH
Q 011388 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNI-IGWLI 131 (487)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~-~~~~~ 131 (487)
.++..|+..-....+.|.+.+++|++.++++...++..+...+-.+ +|+++||++ ||+.++++.++.+ +....
T Consensus 34 ~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 34 VLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 3355566633344556678888999999999999999999999666 999999998 7888888877763 44344
Q ss_pred HHHhcChhHHH-HHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhH---HHHHHHHHHHHHHHHhhhhh----hhHHHH
Q 011388 132 ISFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS---VNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (487)
Q Consensus 132 ~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~g~~~~~~l~~~~----~wr~~f 203 (487)
.+..++..... +.+++.+++.+...++..++..|..+ +++....+ ......++|.++++.+++.+ +||..|
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f 191 (468)
T TIGR00788 113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILF 191 (468)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence 44445554444 48899999999999999999999998 55544333 33333446777777776655 899999
Q ss_pred HhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchh
Q 011388 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (487)
++.+...++..+..++++|++.....+.++++.. . ... ..........+.....+..++++..+.
T Consensus 192 ~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---------~-~~~-----~~~~~~~~~~~~~~~l~~~l~~~~i~~ 256 (468)
T TIGR00788 192 LITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM---------N-MAL-----LTLGVLANVKVQILGLRGAIQLLEIAK 256 (468)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccchh---------h-hhh-----hhhhHHHHHHHHHHHHHHHHhcHHHHH
Confidence 8888777666666677787531000000000000 0 000 000000000111122333445444333
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (487)
.+...++.+...........++.+ ...|+++.. ......+++.+++..+.+++.+|++.|+.+.++.++.+++..
T Consensus 257 ~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 257 PLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence 222222211111111111111212 245777665 566667889999999999999999999998888777766654
Q ss_pred HHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
.........+. ...- ...+.......+...+.+....+. ..++.+..|++.+|+..++.+.+.++|+.+++.++
T Consensus 334 ~~~~l~~~~~~-~~gi----~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 334 FDLILVKRWNL-AFGI----SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred Cceeeeecccc-ccCC----CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 43211100000 0000 001112222223334444444454 48889999999999999999999999999999999
Q ss_pred hhHhh
Q 011388 442 NFLLD 446 (487)
Q Consensus 442 g~~~~ 446 (487)
+.+.+
T Consensus 408 g~l~~ 412 (468)
T TIGR00788 408 VLLME 412 (468)
T ss_pred HHHHH
Confidence 99888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=163.58 Aligned_cols=360 Identities=15% Similarity=0.125 Sum_probs=223.9
Q ss_pred chhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhh
Q 011388 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVP 124 (487)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~ 124 (487)
.++...+..+|+..|..+++.........+...|.+++.++..++.+.|.....+...++|++.|| +|-|..-++-++.
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 345667777777778888999988888888999999999999999999999999999999999995 6888777776666
Q ss_pred HHHHHHHHHH---hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-hhH
Q 011388 125 NIIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWR 200 (487)
Q Consensus 125 ~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-~wr 200 (487)
..+|.++++. .+.+|.+.++|++.|+|.-...++..++...|+..|+.+.++|+.....-+|..+--.+..++ +.-
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 7777777654 578999999999999999999999999999999999999999999999999887654444333 111
Q ss_pred HHHHhhhHHHHHHHhhhh---ccCCChHHHHhcC-ChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHh
Q 011388 201 VLAVLGVLPCTLLIPGLF---FIPESPRWLAKMG-MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (487)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~---~~~e~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (487)
.-++-+..-..+.+.+.+ ....+---....+ .++++++.+.+ ++....+.....+..
T Consensus 200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~-------------------e~g~~Ge~pkLtdv~ 260 (459)
T KOG4686|consen 200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL-------------------EEGFLGEEPKLTDVN 260 (459)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh-------------------hcCcccCCccccccc
Confidence 111100000000000000 0000000000000 00011111100 000000000111111
Q ss_pred h-cccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 011388 277 R-KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (487)
Q Consensus 277 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (487)
. .+.+|... ....+.......+....|.++++ .|+++.. ...........+.+++.|.++||+|++...+.+
T Consensus 261 ~f~ppfw~~~----iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 261 TFYPPFWVLV----IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred ccCccHHHHH----HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 1 12222222 22222222233444555666665 5887665 444445566778888999999999998766554
Q ss_pred HHHH-HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHH
Q 011388 353 SSGM-AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 431 (487)
Q Consensus 353 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 431 (487)
..+. ..+-..+.+.. +.++ ..+.+.+..++.. ....|..++.+.|++..|++.|.++.+.+
T Consensus 337 a~~~tl~~H~~l~Ft~--------------lsPy---~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqN 398 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTF--------------LSPY---TSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQN 398 (459)
T ss_pred HHHHHHHHhhhHHhhh--------------ccHH---HHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHh
Confidence 3333 33333333221 1122 2223333333211 12235677788999999999999999999
Q ss_pred HHHHHHHHHhhhHhh
Q 011388 432 LVSWIVTMTANFLLD 446 (487)
Q Consensus 432 ~g~~i~~~~~g~~~~ 446 (487)
+|-++.|.++|.+.|
T Consensus 399 Lgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 399 LGLAFIPIIAGFIAD 413 (459)
T ss_pred hhhhHHhhhhheeec
Confidence 999999999999999
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=178.80 Aligned_cols=336 Identities=13% Similarity=0.043 Sum_probs=206.3
Q ss_pred cccchh-HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----hhch-hHHHHhhhhhHHHHHHHHHHhcC---
Q 011388 67 GYSSPT-QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD--- 137 (487)
Q Consensus 67 ~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----~~Gr-r~~~~~~~~~~~~~~~~~~~~~~--- 137 (487)
+...+. ...+.+.+|+++.++|.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..++-..++
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~ 102 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEG 102 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCc
Confidence 344443 44566778999999999999999999999999999999 6698 66777788888888766654432
Q ss_pred ---hhHHHHHHHHHHHhhhhcchhHHHHHHhhC-CcCccchhhHHHHHHHHHHHHHHHHhhh----hh-------hhHHH
Q 011388 138 ---SSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL----FV-------NWRVL 202 (487)
Q Consensus 138 ---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~----~~-------~wr~~ 202 (487)
+..+++..++.+++.....+...++..|.. ++++|.+..++-....++|..+.+.+.. .+ +|+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~ 182 (473)
T PRK10429 103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMF 182 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 235566667778888888888999999998 5889999888866666666444433221 11 56766
Q ss_pred HHhhhHHHHHHH-hhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccc
Q 011388 203 AVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (487)
Q Consensus 203 f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (487)
..+.++..++.. +..+..||.++. . .+ +..++++.+.+..++.+++++.+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~~e~~~~----~-~~------------------------~~~~~~~~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 183 TLVLIAFFIVSTIITLRNVHEVYSS----D-NQ------------------------VSAEGSHLTLKDIVALIYKNDQL 233 (473)
T ss_pred HHHHHHHHHHHHHHHHcCceecCCc----c-cc------------------------ccccccCCCHHHHHHHHhcCHHH
Confidence 666555545443 333446664310 0 00 00001112233345556666655
Q ss_pred hhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
+..+...++.... ......+.+++.+....+... .......+..+++.++.+++.||+|+|+.+..+..+..++
T Consensus 234 ~~ll~~~~~~~~~----~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~ 309 (473)
T PRK10429 234 SCLLGMALAYNIA----SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLS 309 (473)
T ss_pred HHHHHHHHHHHHH----HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 5444433333322 222222333333332222222 3444455778889999999999999999988777665555
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------hhhhhhHhHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWL 432 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~ 432 (487)
.+.+........ ...+..++...+.+.+.+. ..+..+++.+|..+ .+..|..+|..++...+
T Consensus 310 ~~~~~~~~~~~~----------~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 310 CGVLLLMGLAAP----------HNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred HHHHHHHhccCc----------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 444432211110 0112222222233333322 23445577888855 33456688999999999
Q ss_pred HHHHHHHHhhhHhh
Q 011388 433 VSWIVTMTANFLLD 446 (487)
Q Consensus 433 g~~i~~~~~g~~~~ 446 (487)
+..+++.+.|++.+
T Consensus 379 ~~al~~~i~g~~l~ 392 (473)
T PRK10429 379 GSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=168.75 Aligned_cols=364 Identities=16% Similarity=0.111 Sum_probs=212.9
Q ss_pred cccccchhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhH--HHHHHH-HHHh----c
Q 011388 65 TCGYSSPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN--IIGWLI-ISFS----K 136 (487)
Q Consensus 65 ~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~--~~~~~~-~~~~----~ 136 (487)
..+...|..|..- ++.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++..+.+. ..+... ..+. .
T Consensus 22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~ 101 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666544 558999999999999999999999999999999999766554433222 112222 1222 2
Q ss_pred Chh-HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHH
Q 011388 137 DSS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (487)
Q Consensus 137 ~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~ 212 (487)
|.+ ..+++-...|+...+..|+.-+++.++.. +.+.=.|-.-+..++|.+++..+++.+ +-+..|++....+++
T Consensus 102 n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 102 NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAII 179 (412)
T ss_dssp T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHH
Confidence 332 23333344455555555666666666542 223334444555666666666666655 456778877766555
Q ss_pred HHhhhhc-cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHH
Q 011388 213 LIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLL 291 (487)
Q Consensus 213 ~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (487)
..++.+. .|+.++....++. ...++++.+..+..+++++|++|.+.+.....
T Consensus 180 l~lll~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 180 LLLLLLLLKPDVPPQAEVADA---------------------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp HHHHHHSS---SSSSS-SSTT---------------------------SSS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCchhhhhhcc---------------------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 5444443 3333221000000 00001111123345667777655444333322
Q ss_pred HHHHhhchhhHHhhHHHHHHhcCCCc----hh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 011388 292 VLQQLSGINGVLFYSSNIFANAGISS----SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~----~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
.. .+.......+.++...--+. .. .......+..++.-.+.+++.+|+|.|+.+.++..++.+=....++
T Consensus 233 ~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 233 AA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 22 23344434455554432222 11 4445556777788889999999999999999988888877777665
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH-HHHHHHHHHHHHHHhhhH
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFL 444 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~ 444 (487)
. ..++.....=.+-+.-+.....+ ..-|+++.+|++..++...+. +...++|.++.+.+.|.+
T Consensus 309 ~---------------~~~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 309 A---------------TNPWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp -----------------SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred h---------------cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 3 22233333333333333222222 247889999999999999885 788999999999999999
Q ss_pred hh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 445 LD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 445 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
.| .|+..++++.+.+.+...++..+.+++.++.
T Consensus 373 yd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 373 YDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 99 7777889999998888888887777666553
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=173.45 Aligned_cols=326 Identities=16% Similarity=0.186 Sum_probs=232.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHH-HHhhhhhHHHHHHHHHHh-c-------Ch
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGS-LMIAAVPNIIGWLIISFS-K-------DS 138 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~ 138 (487)
..+.+.+.+|+++...|.+..+..+-.++..|+.|.++| |+||||. ++++.++.+++.+++... | ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 456677888999999999999999999999999999999 8997655 556888888888887766 4 23
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCC-cCccchhhHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHhh
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLG 206 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----------~wr~~f~~~ 206 (487)
..+.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+...+ +|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 346777777899999999999999999998 57899999998888888876544433222 588888777
Q ss_pred hHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHH
Q 011388 207 VLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (487)
Q Consensus 207 ~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (487)
++..++. ++..+..+|.++ +.+.++++.+.++.+++++++|.++...
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~--------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV--------------------------------EVTEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHHHHhhhhhheeeeccc--------------------------------cccccccccccccchhhhcccchHHHHH
Confidence 7666665 444555677211 0011122333455678888888877766
Q ss_pred HHHHHHHHHHhhchhhHHhhHHHHHHhcCCCch-hHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 011388 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (487)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
....+..+..........+|..+.. +.+.. ........+..+++.++.++++||+|+|+....+..+.+++.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVL---GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 6666655544443334444444433 33222 2555566788899999999999999999999999988888877776
Q ss_pred HHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCCh-------hhhhhHhHHHHHHHHHHHHHH
Q 011388 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV-------NIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~i~ 437 (487)
+... ...+...+...+.+.+.+ ......+++.+|..+. +..|..+|+.++...++..++
T Consensus 309 ~~~~-------------~~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la 374 (428)
T PF13347_consen 309 FLGP-------------GSPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA 374 (428)
T ss_pred HHHh-------------hhHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence 5421 012333344444444443 3345666888888764 345899999999999999999
Q ss_pred HHHhhhHhh
Q 011388 438 TMTANFLLD 446 (487)
Q Consensus 438 ~~~~g~~~~ 446 (487)
+.+.+.+.+
T Consensus 375 ~~i~g~~l~ 383 (428)
T PF13347_consen 375 GAIVGLLLA 383 (428)
T ss_pred HHHHHHHHH
Confidence 999998877
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-18 Score=161.51 Aligned_cols=356 Identities=18% Similarity=0.234 Sum_probs=223.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh-hhhhHHHHHHHHHHh-c-ChhHHHHHHHHHHHhhhhcchhHHH
Q 011388 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFS-K-DSSFLFMGRLLEGFGVGVISYTVPV 161 (487)
Q Consensus 85 ~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~ 161 (487)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. + +++...+.-++.-++.+...+...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999987665555 555555666666664 3 3444455566666788888888999
Q ss_pred HHHhhCCcCcc--------------------------chhhHHHHHHHHHHHHHHHHhhhhh------------hhHHHH
Q 011388 162 YIAEIAPQNMR--------------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLA 203 (487)
Q Consensus 162 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~~------------~wr~~f 203 (487)
++.|..+++++ ++..+.-.....+|.++...+.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 8988888888888888776655333 247777
Q ss_pred HhhhHHH-HHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccch
Q 011388 204 VLGVLPC-TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (487)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (487)
.+.++.- +..+...+++||.|+....++..... ...-++-...++++.+.|...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~-------------------------~~g~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYL-------------------------RFGFKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHH-------------------------HHHHHHHHHHHHHHHhChHHH
Confidence 7766654 44466677788876410000000000 000111223344444444433
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccch--HHHHHHHHHHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGMA 357 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~ 357 (487)
.+++ .++...-+...+......+.+ ..|++..+ .......+.+++|+++.+++.||+|.| +.+..+.....
T Consensus 285 ~fLi----a~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 285 LFLI----AYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3333 333333344555555555555 56888777 556666899999999999999999988 66666554442
Q ss_pred HHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHH
Q 011388 358 ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 437 (487)
+..+. +...........+ ..+. +..+.++.+.+..+..+...++.+|+.|+++.+.-+|++...+...+.+|
T Consensus 361 ~i~~~-g~~G~~~~~~g~~------~~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lG 432 (477)
T PF11700_consen 361 IIPLY-GLFGFWPSFFGLK------SPWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLG 432 (477)
T ss_pred HHHHH-HHHHhhhcccCcc------cHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 22221 1110000000000 1111 22233333444445567788999999999999999999999999999999
Q ss_pred HHHhhhHhh-hh-cchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 011388 438 TMTANFLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478 (487)
Q Consensus 438 ~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
|.+.|.+.+ .+ ....+....++.+++ ++.+..++..|+++
T Consensus 433 Pll~g~i~~~tg~~r~g~~~l~~lf~~g-l~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 433 PLLFGLITDATGSQRYGFLFLLVLFLIG-LILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHH-HHHHhhccchhhhh
Confidence 999999999 33 333344444444444 44445565555543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=166.74 Aligned_cols=321 Identities=13% Similarity=0.130 Sum_probs=192.7
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHH-HhhhhhHHHHHHHHHHhc-----C--hhH
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLIISFSK-----D--SSF 140 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~~~~~~~~-----~--~~~ 140 (487)
.+.+.+.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++....+ + ...
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3467777899999999999999999999999999999996 776644 556555554444432212 1 223
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCc-CccchhhHHHHHH-----HHHHHHHHHHhhhhh------hhHHHHHhhhH
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLS-----VTIGIMLAYLLGLFV------NWRVLAVLGVL 208 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~l~~~~------~wr~~f~~~~~ 208 (487)
+++..++.+++.+...+...++..+..++ ++|.+..++-..+ ..++..++|.++... +|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 45556777888888888888887777654 6787776655443 234555566655432 12211112222
Q ss_pred HHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHH
Q 011388 209 PCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (487)
Q Consensus 209 ~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (487)
..++. ++.....||+++. +.++...+..++.+++++.+......
T Consensus 192 ~~~~~~~~~~~~~~e~~~~-----------------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVR-----------------------------------IVAQPSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred HHHHHHHHHHcCcEeccCC-----------------------------------CccCCCHHHHHHHHhCCchHHHHHHH
Confidence 22222 2223334554210 00111223346778888776555444
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh-HH-HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN-VA-TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
.++..... .......++++++ .|.++.. .. .....++.+++.++.+++.||+++|+.+..+.++..++.+.+.
T Consensus 237 ~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 237 ALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 44443322 2223334444443 2443332 22 2222456778899999999999999999988877777665554
Q ss_pred HHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh-------hhhhHhHHHHHHHHHHHHHH
Q 011388 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN-------IKSLAGSVATLANWLVSWIV 437 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~ 437 (487)
+. .. ...+.......+.+.+.+.. .+...++..|..|.+ .+|...|+.+....+|..++
T Consensus 313 ~~---~~----------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig 378 (448)
T PRK09848 313 WV---SV----------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG 378 (448)
T ss_pred Hc---Cc----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence 31 00 01122222233333333322 244557777777644 45899999999999999999
Q ss_pred HHHhhhHhh
Q 011388 438 TMTANFLLD 446 (487)
Q Consensus 438 ~~~~g~~~~ 446 (487)
+.+.+.+.+
T Consensus 379 ~~i~g~~l~ 387 (448)
T PRK09848 379 GSIPAFILG 387 (448)
T ss_pred HHHHHHHHH
Confidence 999998876
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-17 Score=160.07 Aligned_cols=322 Identities=13% Similarity=0.067 Sum_probs=201.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHhhhhhHHHHHHHHHHhcC------hhHH
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRK-GSLMIAAVPNIIGWLIISFSKD------SSFL 141 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l 141 (487)
...+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++..++-..|+ ...+
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 445677889999999999999999999999999999995 6875 5555677888888777665553 3456
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCC-cCccchhhHHHHHHHHHHHHHHHHhhhh----h-------hhHHHHHhhhHH
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLP 209 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~----~-------~wr~~f~~~~~~ 209 (487)
++.-++..++.......-.++..|..+ ++||.+..++...+..+|..+++.+... . +|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 667777788888888888999999987 7889999999998888887766554322 1 467666555555
Q ss_pred HHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHH
Q 011388 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (487)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (487)
.+++.. .....+|.++. +.++.+.+...+..++++.++......
T Consensus 193 ~~i~~~i~~~~~kE~~~~-----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 193 AFMMLAFCFFTTKERVEA-----------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHHHhcceeccCC-----------------------------------CccCCCHHHHHHHHhCChHHHHHHHHH
Confidence 444433 33334543210 000111234556677777766554443
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHhcCCCchh-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 011388 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (487)
.+.............+|..+++ +..... .......+..+++.++++++.||+++|+....+.....+...++.+.
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~- 313 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV- 313 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-
Confidence 3333332222233333433332 222222 34555677788899999999999999988765444333322222211
Q ss_pred HhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------hhhhhhHhHHHHHHHHHHHHHHHHH
Q 011388 368 FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILP-------VNIKSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
.. ..........++.+.+. ....++.+++..|..+ .+..|...+...+...+|..+++.+
T Consensus 314 --~~----------~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 314 --PM----------QASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred --ch----------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111122222222222 2233444566776655 2333555677788999999999999
Q ss_pred hhhHhh
Q 011388 441 ANFLLD 446 (487)
Q Consensus 441 ~g~~~~ 446 (487)
.|.+.+
T Consensus 381 ~g~iL~ 386 (460)
T PRK11462 381 IGWMLA 386 (460)
T ss_pred HHHHHH
Confidence 999887
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=151.05 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=174.0
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---------------
Q 011388 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------- 197 (487)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--------------- 197 (487)
+..++|+.++++-++.|.|.+...+..+.++.+..++|++.+.+++.+..+++|.+++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999998732
Q ss_pred -----hhHHHHHhhhHHHHHHHhhhhc--cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhh
Q 011388 198 -----NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (487)
Q Consensus 198 -----~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (487)
+|+++|++.+...++..+.+.+ +||..+ ++++ +..++ +. .
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------~~~~~-~~---~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------RVSSG-DT---T 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------ccccc-cc---c
Confidence 5888888655544444333333 454311 0000 00000 00 0
Q ss_pred hHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh---cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccc
Q 011388 271 RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (487)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 345 (487)
..++.++++..+. ..+..++..+.......|.+.++++ .|.++.. ........+.++|+++.+++.||+++
T Consensus 132 ~~~~~~~~~~~~l----~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFTHLVL----GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 1112334333332 2233333333455667777887764 3666555 56677788899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH
Q 011388 346 RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 425 (487)
|+.+..+..+..++.++.... .. ........+.+.+. ....|...+...+..|++ .+++.++
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~---~~-------------~~~~~~~~l~g~~~-s~i~P~~~s~a~~~~~~~-~~~asai 269 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT---HG-------------YVAMWFVLALGLFN-SIMFPTIFSLALNALGRH-TSQGSGI 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CC-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh-hhhhHHH
Confidence 998877776666554333321 00 11122222333333 344566667777777754 4566676
Q ss_pred HHHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 426 ATLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 426 ~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
. ....+|+++.|.+.|.+.| .+....++
T Consensus 270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred H-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 5 6788999999999999999 55544444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=148.69 Aligned_cols=346 Identities=14% Similarity=0.174 Sum_probs=224.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHhhhhhHHHHHHHHHHhcC--hh-HHHHHHHHHHHhhhhcchhHH
Q 011388 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKD--SS-FLFMGRLLEGFGVGVISYTVP 160 (487)
Q Consensus 85 ~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~~ 160 (487)
+..+...++..+..++.+|+.|.++|+.|+|| .+-....+..++..+..++++ ++ ..++.-.+..++.....+.-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 45788999999999999999999999999655 455566666677777777765 44 445567788888888999999
Q ss_pred HHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh----------------------hhhHHHHHhhhHHHHHH-Hhhh
Q 011388 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------------------VNWRVLAVLGVLPCTLL-IPGL 217 (487)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----------------------~~wr~~f~~~~~~~~~~-~~~~ 217 (487)
+++.+..++++-++..++-.....+|+.+.-.+... ..=|..+.+.++.-++. +..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 999999999888887776655555665544333210 03566666666654443 4555
Q ss_pred hccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhh
Q 011388 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (487)
Q Consensus 218 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
+..+|.++- +.... +...+.-++.+++++++++++....++++.++ ..-
T Consensus 218 ~~v~~~~~~---~~~~~------------------------~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~----~~D 266 (438)
T COG2270 218 LNVHDAEKI---SSPPP------------------------TALRNGFKELKSTFKEIRGRKNLVLFLIARFF----YID 266 (438)
T ss_pred hcccccccc---cccch------------------------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHH----HHh
Confidence 566665420 00000 00011122334556677766664444444333 333
Q ss_pred chhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
+.+.+......+-. +.|+++.+ .......+.+++|+++.|++.||+|.|+++..+.++..+..+...+...
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~------ 340 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG------ 340 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc------
Confidence 45556666666665 56888777 4555668899999999999999999998888877766555444433210
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhh-
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTF- 453 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~- 453 (487)
...++...++.+.+..+.....-++..+++|+++.+..+|+++..+...+..+|.+.+.+.+.......
T Consensus 341 ----------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 341 ----------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred ----------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 112222222333333455667789999999999999999999999999999999999999993333322
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC
Q 011388 454 LIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
....++.++..++.+...|..+++
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~~~~ 434 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVPGRR 434 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCCCCc
Confidence 222233333334444455554333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=147.41 Aligned_cols=327 Identities=16% Similarity=0.153 Sum_probs=223.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----hhch-hHHHHhhhhhHHHHHHHHHHhcC------hhHH
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD------SSFL 141 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----~~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l 141 (487)
+-.+.+.+|+++..+|.+..+.-+--++..|+.|.++| |+|| |+.++.+.+.+++.+.++-.+++ ....
T Consensus 36 l~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 36 LFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred HHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 34567778999999999999999999999999999999 4786 56667788999999999988874 4466
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCC-cCccchhhHHHHHHHHHHHHHHHHhhh----hh-------hhHHHHHhhhHH
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGL----FV-------NWRVLAVLGVLP 209 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~----~~-------~wr~~f~~~~~~ 209 (487)
++.-.+.+++.......-.++..|..+ ++||.+..+.-..+.++|..+...+.. .+ ||+..-.+.+++
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 678889999999999888999999886 678999999999888888665443332 22 677666666665
Q ss_pred HHHHHhh-hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHH
Q 011388 210 CTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (487)
Q Consensus 210 ~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (487)
+++..+. ++-.+|.+.. + +...+..+.+.+.++..+++|+.++......
T Consensus 196 ~~i~~l~~~~~v~ER~~~---~---------------------------~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~ 245 (467)
T COG2211 196 GVILLLFCFFNVKERVVE---T---------------------------QPTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245 (467)
T ss_pred HHHHHHHHHHHhhcccCc---c---------------------------ccCcccccccHHHHHHHHHccchHHHHHHHH
Confidence 5555443 3335665320 0 0000011222333455677887766655543
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
.+.+.....-.....+|..+.+ |.++.. ........+.+++.++..++.+|+|+|++...+.++.+++.+++.+.
T Consensus 246 l~~~~~~~i~~s~~~yy~~y~l---g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 246 LLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHhhhhheeEEEEc---CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333332222223333333333 433333 34444556666778999999999999999999998888888887765
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh-------hhhhHhHHHHHHHHHHHHHHHH
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN-------IKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
. . ......++..++...+. ....++.+++++|..+-+ ..|...|.+.+++.+|.+++..
T Consensus 323 ~--~-----------~~~~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 323 P--A-----------GSVVLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred c--C-----------cchHHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3 1 11122333323333333 344577889999876533 4488899999999999999999
Q ss_pred HhhhHhh
Q 011388 440 TANFLLD 446 (487)
Q Consensus 440 ~~g~~~~ 446 (487)
+.|++.+
T Consensus 389 ~~g~~L~ 395 (467)
T COG2211 389 IPGWILG 395 (467)
T ss_pred HHHHHHH
Confidence 9999887
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-16 Score=142.49 Aligned_cols=395 Identities=14% Similarity=0.117 Sum_probs=244.4
Q ss_pred hhHHHHHhhcC----CChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHHHHHHHHHHhc--ChhHHHH
Q 011388 71 PTQAEIISDLK----LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK--DSSFLFM 143 (487)
Q Consensus 71 ~~~~~i~~~~~----~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 143 (487)
+..-.+..+++ +++++..-+.+.|..-.-+..+++|+++||+ |+|+.+..|.++..+|.++.+... +...+++
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i 122 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYI 122 (498)
T ss_pred HHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 34445555665 9999999999999999999999999999996 999999999999999999999984 7889999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcC--ccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 217 (487)
+-.+.++|.|..-+...+++.|.+|++ +|-..++++.++.++|++++|.+.+++ ||...|...++-....++..
T Consensus 123 ~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 123 GLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865 366788899999999999999988877 89999998887666665544
Q ss_pred hccCCC---------hHHHHhcCChHHHHHHHHHHhCCC--h-hhhHHHHHHHH----Hhh-----hccchhhhhHHHHh
Q 011388 218 FFIPES---------PRWLAKMGMTEDFESSLQVLRGFD--T-DISIEVNEIKR----SVA-----SSSRRTAIRFAELK 276 (487)
Q Consensus 218 ~~~~e~---------p~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~ 276 (487)
+..+.. |..+..+............+.... . ........... ... +..+.++.. .+-.
T Consensus 203 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~ 281 (498)
T COG3104 203 LLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERR 281 (498)
T ss_pred HHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHH
Confidence 433211 111111111111111111100000 0 00000000000 000 000000000 1111
Q ss_pred hcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc--CCC-chhHHHHHHHHHHHHHHhHHHHHhhhccch-------
Q 011388 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GIS-SSNVATFGLGVVQVVATGVNTWLMDKAGRR------- 346 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~------- 346 (487)
|-....++++...+.+.........+..|.....+.. |++ +......+..+.-++.+++..++..|.+++
T Consensus 282 r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~ 361 (498)
T COG3104 282 RLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP 361 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcc
Confidence 1112233344445555555555566666665554432 333 222566666677777777777776664332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 347 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
.-..++...+..+++++..........+. ..+.++.+...++....-...+|+..+++....|+...+..++..
T Consensus 362 ~KFalGl~l~g~~fl~l~~~~~~~~~~~~------~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w 435 (498)
T COG3104 362 IKFALGLILAGLGFLILLLAGIWFGGPSG------LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCC------CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence 22345556666666665554222211000 122333444444444555667788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-------HhhhhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 427 TLANWLVSWIVTMTANF-------LLDWSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 427 ~~~~~~g~~i~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
......|+.++..+.+. .........|..++.+.++.........|
T Consensus 436 fLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 436 FLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999988888873 22244445566666666666655444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=161.06 Aligned_cols=379 Identities=15% Similarity=0.168 Sum_probs=216.5
Q ss_pred hhhcccccccccccchhHHHHHhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHhhhhhHHHHHHHH
Q 011388 56 ALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLII 132 (487)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~ 132 (487)
.+.+++.+...+++.+..-...++ .+.+.+..|++.++..++.+++++.+|+.+.|.+. |+.++.|.++..+|+++.
T Consensus 40 ~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY 119 (488)
T KOG2325|consen 40 LLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY 119 (488)
T ss_pred HHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence 344444556667777765455555 67788889999999999999999999999999997 899999999999999998
Q ss_pred -HHh---c-ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------h---
Q 011388 133 -SFS---K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------N--- 198 (487)
Q Consensus 133 -~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~--- 198 (487)
++. + ..+.++++|++.|+|.| ......+|+++-...++|.|+++..+.+..+|.++||.++..+ |
T Consensus 120 ~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i 198 (488)
T KOG2325|consen 120 LALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMI 198 (488)
T ss_pred HHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEE
Confidence 432 3 56889999999999975 4567789999988899999999999999999999998887655 1
Q ss_pred --------hHHHHHhhhHHHHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhh
Q 011388 199 --------WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTA 269 (487)
Q Consensus 199 --------wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (487)
+..+-|+.+++.++.++ +.++++|.++--.+++.+++ ++.+
T Consensus 199 ~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------------------------~~~~ 248 (488)
T KOG2325|consen 199 LPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------------------------EEEK 248 (488)
T ss_pred cCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------------------------hhhc
Confidence 23555666666666544 44557776542111110000 0000
Q ss_pred hhHHHHh-hcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh---HHHHHHHHHHHHHH---hHHHHHh-h
Q 011388 270 IRFAELK-RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVAT---GVNTWLM-D 341 (487)
Q Consensus 270 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~---~~~g~l~-d 341 (487)
....+.. .+..+...+.+....+...+.....-..+.+......+.+... .......+.+++.. +...... .
T Consensus 249 ~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~ 328 (488)
T KOG2325|consen 249 SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLG 328 (488)
T ss_pred cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000011 1122222233333333333222222333333333334554333 22222233333222 2222222 2
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhhc-cc--------CCC--ccchhHH----HHHHHHHHHHHHHHHhcCc-ccc
Q 011388 342 KAGRRLLLLISSSGMAASFFLVSVAFFLEG-FV--------SED--SRFYSIL----GILSLVGLVTVVISFSLGV-GAI 405 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~ 405 (487)
++.+|+.+..+++.......+......... +. ..+ ...|... +...+.....+..+.+..+ ...
T Consensus 329 ~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~ 408 (488)
T KOG2325|consen 329 KIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTA 408 (488)
T ss_pred hhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccch
Confidence 334455555443333333333222211111 00 000 0111100 1111111111111111111 122
Q ss_pred hhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHH
Q 011388 406 PWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVA 465 (487)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 465 (487)
..+..+|...++.+++..|++......+..++|.+...... .+..+.+.+.+...++...
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999999999888 5555554444444444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-20 Score=176.92 Aligned_cols=384 Identities=16% Similarity=0.111 Sum_probs=3.0
Q ss_pred HhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH
Q 011388 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (487)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 134 (487)
.++..+......+.....++.+++.|+++.++.|++.+.+-++..+..++..+..+|..|-|.+-+|.++++++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 34444445666677777899999999999999999999999999999999999999999999999999999999999875
Q ss_pred hc--------------------------------------------------ChhHHHHHHHHHHHhhhhcchhHHHHHH
Q 011388 135 SK--------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (487)
Q Consensus 135 ~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 164 (487)
-+ -+..++++.++.|+|.+..++...+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 0347888999999999999999999999
Q ss_pred hhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHhhhHHHHHHHhhhh
Q 011388 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--------------------------~wr~~f~~~~~~~~~~~~~~~ 218 (487)
|..++++-+.++|+..+...+|.++|..+++.. .|..-|++.++..++..+.++
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888654 155555566666555555556
Q ss_pred ccCCC-hHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhh
Q 011388 219 FIPES-PRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (487)
Q Consensus 219 ~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (487)
++|+. |.....+++.+..++ +....+ ..+.+.++........-+.-....+.+++|+. ++...+.......
T Consensus 248 ~FPk~lp~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~~~~la~~~~~~ 319 (539)
T PF03137_consen 248 FFPKKLPGTSERQEEKESSER---KEEDSD-KDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCCCcccccchhhhhhc---chhhhh-hhcccccccccchhhhhhhHHHHHHHHhcChH----HHHHHHHHHHHHH
Confidence 66654 221000000000000 000000 00000000000001112233345566667666 4444444455555
Q ss_pred chhhHHhhHHHHHHhc-CCCchh---HHHHHHHHHHHHHHhHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHH----H
Q 011388 298 GINGVLFYSSNIFANA-GISSSN---VATFGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFLVSVA----F 367 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~----~ 367 (487)
....+..|.|.+++.. +.++.. +.......+..+|.+++|++.+|++ .|..+....+...++.+.+... .
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 5677888899988763 665444 2223334467789999999999975 3444444443333333321111 1
Q ss_pred Hh----hcccCCC------c--------------------cchh----HHHHHHH-HHHHHHHHHHhcCcccchhhhhcc
Q 011388 368 FL----EGFVSED------S--------------------RFYS----ILGILSL-VGLVTVVISFSLGVGAIPWVIMSE 412 (487)
Q Consensus 368 ~~----~~~~~~~------~--------------------~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 412 (487)
.. ....+++ . ...- ......+ +.+++..........|.. ...-+
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR 478 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITLR 478 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeeec
Confidence 00 0000110 0 0000 0111122 222222222233333443 55667
Q ss_pred cCChhhhhhHhHHHHHH-HHHHHHHHHHHhhhHhhh
Q 011388 413 ILPVNIKSLAGSVATLA-NWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 413 ~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~~~ 447 (487)
.+|+++|+.|.|+...+ +-+|.+-+|.++|.+.|.
T Consensus 479 ~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 479 CVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------
T ss_pred cCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 89999999999999654 566889999999999983
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-14 Score=130.44 Aligned_cols=325 Identities=15% Similarity=0.092 Sum_probs=217.8
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHh-hhhhHHHHHHHHHHh-----c-------
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMI-AAVPNIIGWLIISFS-----K------- 136 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~------- 136 (487)
.+..|++++..-.+.+.++..+... ..+.+|+.||+.+ ||..+++ |..+...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3667899999999999999888775 6999999999999 7766555 667666666665543 2
Q ss_pred -Ch-h--HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH---
Q 011388 137 -DS-S--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAV--- 204 (487)
Q Consensus 137 -~~-~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~--- 204 (487)
.+ + ...+...+.|+|.+...+...+++.|..|+++|+++.++...+.-+|.+++..+.+.+ .-|..-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 22 1 3445677889999999999999999999999999999999999999999998887766 2222222
Q ss_pred hhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhH
Q 011388 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (487)
...+..++.++..+-. |.+.. . ..+..++++......++++..++..+++
T Consensus 164 ~a~i~~~l~~ia~wg~-E~r~~-~----------------------------~~~~~~~~~~~f~~a~~~~~~~~~a~~f 213 (403)
T PF03209_consen 164 VALIALLLNLIALWGQ-EPRRS-R----------------------------RAAAAERPRPPFREAWRQVWASPQARRF 213 (403)
T ss_pred HHHHHHHHHHHHHHhc-ccCCc-c----------------------------cccCCCCCCccHHHHHHHHHhCCChhHH
Confidence 2222222223333322 21110 0 0011122334455677788888887777
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFF 361 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~ 361 (487)
+..+++..+..+.--..+-.|.-.. .|++..+ ......+.+.++|-...+++.. |.++++....++....+++.
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~V---fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEV---FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 7666665554332222222233333 3777665 5666677888888888888766 67788888888888888877
Q ss_pred HHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
++.......+. +.......+++.+.+..... ..+.+.++.++++.|..+|.....+.++..++..++
T Consensus 291 lii~a~~~~~~------------~~~~~~~~l~G~g~G~f~vg-als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 291 LIILAGPLGSP------------WLFRPGVFLLGLGNGLFTVG-ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLG 357 (403)
T ss_pred HHHHHHhcccc------------hHHHHHHHHHHHhhhHHHHH-HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77765443322 33333333333333222222 235666788888899999999999999999999999
Q ss_pred hhHhh
Q 011388 442 NFLLD 446 (487)
Q Consensus 442 g~~~~ 446 (487)
|.+.|
T Consensus 358 G~~~D 362 (403)
T PF03209_consen 358 GALRD 362 (403)
T ss_pred HHHHH
Confidence 99988
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=152.04 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=210.5
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHH
Q 011388 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (487)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 128 (487)
...+.+.++..+..++..+.+...+..+++.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|.++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 34555566666777777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--------------------c-----------------------------C--hh-HHHHHHHHHHHhhhhcc
Q 011388 129 WLIISFS--------------------K-----------------------------D--SS-FLFMGRLLEGFGVGVIS 156 (487)
Q Consensus 129 ~~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~ 156 (487)
++++++- + + ++ .++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 9999851 0 0 22 66779999999999999
Q ss_pred hhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHhhhHHHHHH
Q 011388 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----------------------~wr~~f~~~~~~~~~~ 213 (487)
+...+|+-|...+++-+.++|+......+|.++|.+++++. -|..-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 2777778888877777
Q ss_pred HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHH
Q 011388 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (487)
Q Consensus 214 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (487)
.+.++++|...+- ..++.+ .+..+.....+ + ..+......++-++.+...+.+++|+. ++...+...
T Consensus 336 a~p~f~fPk~lp~---~~~~~~-~~~~~~~k~~~-~----~~~~~~~~~~~ikdfp~s~~~ll~N~i----f~~~~l~~~ 402 (735)
T KOG3626|consen 336 AVPLFFFPKELPK---SQKRKR-ARDLHVLKTES-G----GAKSDKTFGKKIKDFPKSIKRLLSNPI----FMLVVLASV 402 (735)
T ss_pred HHHHHhCcccCcc---ccccch-hhhhccccccc-c----cccCCcchhhhHHHHHHHHHHHhcCch----HHHHHHHHH
Confidence 7777777765321 000000 00000000000 0 000000000011223345566666665 555555555
Q ss_pred HHhhchhhHHhhHHHHHHh-cCCCchh--HHH-HHHHHHHHHHHhHHHHHhhhcc--chHHHHHHHHHHHHHHHH
Q 011388 294 QQLSGINGVLFYSSNIFAN-AGISSSN--VAT-FGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFL 362 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~-~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~ 362 (487)
+....+.....|+|.+++. .|.++.. ... .+.-.+..+|.+++|++.+|+. .|....+..+...+.++.
T Consensus 403 ~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 403 IESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 5556677888899999986 4766554 222 2333455678889999999975 344444444333333333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-17 Score=158.88 Aligned_cols=175 Identities=11% Similarity=0.064 Sum_probs=135.1
Q ss_pred hhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHH---HHHhcChhHHHHHHH
Q 011388 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRL 146 (487)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~ 146 (487)
..+|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|+
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456544 668999888888889999999999999999999999999998877654443322 223456778888999
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhhhhccC
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIP 221 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~ 221 (487)
+.|++.+........++.|.+|++.|++++++......++..++|.+.+.+ +|+.++++..+.+++.++..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999888777777888899999999999999974443445556677666554 477777666666676666677789
Q ss_pred CChHHHHhc-----CChHHHHHHHHHHhC
Q 011388 222 ESPRWLAKM-----GMTEDFESSLQVLRG 245 (487)
Q Consensus 222 e~p~~~~~~-----~~~~~~~~~~~~~~~ 245 (487)
|+|+|+.++ ++.||+.+.+.+++.
T Consensus 431 es~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCCccccccchhhHHHHhhcccc
Confidence 999997755 888999999988873
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=117.19 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCc
Q 011388 90 FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 169 (487)
Q Consensus 90 ~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 169 (487)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh-hccCC
Q 011388 170 NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (487)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~-~~~~e 222 (487)
++|++..++.+....+|..+++.+++.+ +|++.+++.++..++..+.. ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999888776 79999888777666654443 34454
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=136.81 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=123.6
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchh
Q 011388 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (487)
Q Consensus 79 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 158 (487)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhCCcCccchhhHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHH-hhhhccCCCh
Q 011388 159 VPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPESP 224 (487)
Q Consensus 159 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~-~~~~~~~e~p 224 (487)
...++.|.+|++.|+...+. ++....+|.++++.+.+.+ |||..|.+.++..++.. +..+.++++|
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88999999999998887655 6777888999988888776 89999998776655543 3444455443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=130.15 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=125.7
Q ss_pred hhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHH
Q 011388 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (487)
Q Consensus 71 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (487)
...|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34554 55678999999999988888888899999999999999999888877766666555566788888888999999
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCC
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 222 (487)
++.+...+....+..|..|+ +|+++.++++....+|..+++.+++.+ +|+..|++.++..++.++..+++||
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887777778888998875 699999999888899999999888776 8999999888888887777777765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=121.51 Aligned_cols=341 Identities=16% Similarity=0.176 Sum_probs=210.6
Q ss_pred ccccccccccchhHHHHHhhcCCChh-hHHHHHH----HHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH
Q 011388 60 IQFGFTCGYSSPTQAEIISDLKLTIS-EFSIFGS----LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (487)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s----~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 134 (487)
+..++......+..+.....++.+.. ..+.... ...+...+.++..|.++||+|||..+....+...+..+...+
T Consensus 32 fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~ 111 (463)
T KOG2816|consen 32 FSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF 111 (463)
T ss_pred HHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 33445555555666666655543322 2233333 346888899999999999999999999999998888888777
Q ss_pred hcChhHHHHHHHHHHHh--hhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhH
Q 011388 135 SKDSSFLFMGRLLEGFG--VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (487)
Q Consensus 135 ~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~ 208 (487)
.. +++++ +.|+. .+.......++++|....++|....++....+..+..++|.+++.. |.-..|.+..+
T Consensus 112 ~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~ 186 (463)
T KOG2816|consen 112 QG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAA 186 (463)
T ss_pred HH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 66 33433 44432 2356667789999999999999999999999999999999988876 56677888777
Q ss_pred HHHHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhh---cccchhH
Q 011388 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR---KRYWFPL 284 (487)
Q Consensus 209 ~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 284 (487)
..++..+ .++++||+-. ++++++ ........ ...........++...+ ++.....
T Consensus 187 ~~~~~~~y~~~~l~Esl~----~~~~~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~r~~l~l 245 (463)
T KOG2816|consen 187 SGILSLLYMLLFLPESLQ----EKERSD--ATLRELTP---------------GSLDSSHVADAFQSLTKVGPDRLLLLL 245 (463)
T ss_pred HHHHHHHHHhhccccccC----cccccc--ccccccCC---------------CcccchhhhhhhhhhcccCCCccchHH
Confidence 7776644 4566888732 000100 00000000 00000011111111222 1111111
Q ss_pred HHHHHHHHHHHhhchh-hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHH-HHhhhccchHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGIN-GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNT-WLMDKAGRRLLLLISSSGMAASF 360 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~ 360 (487)
.....+.......... ...+|+.. ..+++... ......+....++.++.. .+...++.|+.+..+.....+..
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~~yl~~---~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~ 322 (463)
T KOG2816|consen 246 LLVAFLSSLPEAGGASDVLLLYLKA---KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQL 322 (463)
T ss_pred HHHHHHHHHHHhcCceeEEEEEEee---ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Confidence 1111111111111111 11222222 23666555 455556677777777666 67777898888888888888888
Q ss_pred HHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHH
Q 011388 361 FLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
..+++.. ..|....... ...++....|...+..+...+++++|++.++...+..+.+.++|.+
T Consensus 323 ~~~af~~---------------~~w~~~~~~v--~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 323 LLFAFAT---------------ETWMMFAAGV--VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred HHHHHhc---------------cchhhhHHHH--HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence 8887652 1222222221 1222333446666888888999999999999999999999999999
Q ss_pred hhhHhh
Q 011388 441 ANFLLD 446 (487)
Q Consensus 441 ~g~~~~ 446 (487)
.+.+..
T Consensus 386 ~~~i~~ 391 (463)
T KOG2816|consen 386 YGNIFA 391 (463)
T ss_pred HHHHHH
Confidence 998865
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=129.41 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=123.4
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcCh--hHHHHHHHHHH
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEG 149 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 149 (487)
..+.+.++++.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+..+.+++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 4455678899999999999999999999999999999999999999999999999988888877754 33456778889
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~ 213 (487)
++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|.+.++..++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 988888888889999999999999999999999999999999988766 8999998877766654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=137.29 Aligned_cols=138 Identities=16% Similarity=0.082 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhh
Q 011388 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (487)
Q Consensus 87 ~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 166 (487)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778899999999999999999999999999999999999999999988899999999998888999999999999
Q ss_pred CCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHhhhhccCCCh
Q 011388 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (487)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (487)
+|.++|++++|+.++...+|.+++|.+++.+ +...+|++.++..++..++..++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998765 445677777777777766667779873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=112.40 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=159.7
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHH
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (487)
...+|.+-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-++.+++.+++++ +-..+|++.++++|+
T Consensus 51 WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRv 129 (354)
T PF05631_consen 51 WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRV 129 (354)
T ss_pred HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 3445766666678999999999999999999999999999999999999999999999999886 456799999999999
Q ss_pred HHHHhhhhcchhHHHHHH-hhC----CcCccchhhHHHH-HHHHHHHHHHHHhhhhh----h--hHHHHHhhhHHHHHHH
Q 011388 147 LEGFGVGVISYTVPVYIA-EIA----PQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----N--WRVLAVLGVLPCTLLI 214 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~-~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~----~--wr~~f~~~~~~~~~~~ 214 (487)
+.|++.+..+.+--++.. |.- |++..+..++... ...++-.+.+..++..+ + -..+|.......++..
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 999999999888877654 332 2222222232222 22222333444444433 3 3578888877777665
Q ss_pred hhhh-ccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHH
Q 011388 215 PGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (487)
Q Consensus 215 ~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (487)
+.+. ..+|.+. +..+ ..+..+..+..++.+.++++ .+........
T Consensus 210 ~~I~~~W~ENyg------~~~~-------------------------~~~~~~~~~~a~~~i~~d~r---il~LG~~qsl 255 (354)
T PF05631_consen 210 VLILKTWPENYG------DTSS-------------------------SSSLSGSFREAWRAILSDPR---ILLLGLIQSL 255 (354)
T ss_pred HHHHhcccccCC------Cccc-------------------------ccchHHHHHHHHHHHHcCch---hHHHHHHHHH
Confidence 5444 3455421 0000 00000111223445555544 2333344455
Q ss_pred HHhhchhhHHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHH
Q 011388 294 QQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSG 355 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~ 355 (487)
.....+..+..|.|.+-.+..--+-...+..+.+..++|+.+..++..+ ......+.....+
T Consensus 256 FE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~ 318 (354)
T PF05631_consen 256 FEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAV 318 (354)
T ss_pred HHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555566677788877632222233467777788888888888765544 3333444333333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=130.23 Aligned_cols=153 Identities=14% Similarity=0.273 Sum_probs=125.1
Q ss_pred hhHHHHHhhcCCC--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc----Ch
Q 011388 71 PTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DS 138 (487)
Q Consensus 71 ~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~ 138 (487)
...+...++.|.+ .++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3345555566644 36679999999999999999999999999999999999999998877777642 24
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHH-HHHHHHHHHHHHhhhhh----------hhHHHHHhhh
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGV 207 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~----------~wr~~f~~~~ 207 (487)
+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|..+||.+++.+ ||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 567788999999999888999999999999999999999997 67889999999988765 3899998877
Q ss_pred HHHHHH-HhhhhccCCC
Q 011388 208 LPCTLL-IPGLFFIPES 223 (487)
Q Consensus 208 ~~~~~~-~~~~~~~~e~ 223 (487)
+..++. ++..+++||+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 665555 4445556765
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=128.80 Aligned_cols=150 Identities=10% Similarity=0.072 Sum_probs=128.2
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (487)
..|.+.++.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999999999999999988877777777777888888888888999998
Q ss_pred hhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhhhhccC
Q 011388 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIP 221 (487)
Q Consensus 152 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~ 221 (487)
.++..+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......++..+..+.+.
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999999998876 466666666655555544444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-13 Score=124.55 Aligned_cols=157 Identities=21% Similarity=0.332 Sum_probs=139.7
Q ss_pred ccccccchhHHHHHhhc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHhhhhhHHHHHHHHHHhcChhHH
Q 011388 64 FTCGYSSPTQAEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKDSSFL 141 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l 141 (487)
..........|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33344455566666664 999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 217 (487)
.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+ +|++.+++.++..++..+..
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998776 89999999888877776655
Q ss_pred hcc
Q 011388 218 FFI 220 (487)
Q Consensus 218 ~~~ 220 (487)
+++
T Consensus 349 ~~~ 351 (352)
T cd06174 349 LLL 351 (352)
T ss_pred eec
Confidence 443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=124.06 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=125.0
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 154 (487)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999998888888888999999999999999999888877776666666778888888899999999998
Q ss_pred cchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCC
Q 011388 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (487)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 222 (487)
..+....++.|..|+ +++++.++.+....+|..++|.+++.+ ||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888999998875 567999999999999999999888766 8999999888887777666666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=123.81 Aligned_cols=348 Identities=12% Similarity=0.103 Sum_probs=194.8
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHHHHhhhhhHHHHHHHHHHhc----ChhHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGSLMIAAVPNIIGWLIISFSK----DSSFL 141 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l 141 (487)
+..|.+.+++|+++++.....+...+...+ -++.|.++|-+ .||+.++++.++..++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 457789999999999999999999888865 77889999976 367777778887777677666644 46666
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCc--CccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~ 215 (487)
.+.-++..+|.+....++-+++.|...+ +.||...+.......+|.+++..+++.+ ++|..|.+.++...+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 7777888999999999999999998843 3467778888888888999888887766 788888877766555544
Q ss_pred hhhc-cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHH-HHHHHHH
Q 011388 216 GLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI-GIGLLVL 293 (487)
Q Consensus 216 ~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 293 (487)
..++ .+|.++ .+.++.... . ++..+......++.....++.++.+..+...+ ..++...
T Consensus 170 ~~~~~~~e~~~-----~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 230 (433)
T PF03092_consen 170 VALFLLEERKV-----RPADEVFSF-------G-------KEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNL 230 (433)
T ss_pred HHHHhhhhccc-----cccchhhcc-------c-------ccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4444 443110 000000000 0 00000000001112223334444443332222 1111111
Q ss_pred HHhhchhh-HHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011388 294 QQLSGING-VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (487)
Q Consensus 294 ~~~~~~~~-~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (487)
.... ... ..++.......-++++.. ....+..++.++|..+......+..-|+++....++..+..+.-.......
T Consensus 231 ~~~~-~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~ 309 (433)
T PF03092_consen 231 PPSI-SSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW 309 (433)
T ss_pred ccCC-CCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE
Confidence 1111 111 111221111111243333 223344455555655555555555556665554443332222111100000
Q ss_pred -cccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 371 -GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
...+-+.. +..+.--.+........+.|.. .+.+|+.|+...|+.+++...+.++|..++..++..+.+
T Consensus 310 n~~~Gi~d~------~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 310 NLDLGIPDQ------WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred eeeeCcCCe------EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 1111111122222233333444 788999999999999999999999999999999988877
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=121.70 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=125.9
Q ss_pred chhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHH
Q 011388 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (487)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (487)
....|.+.+|+|.+..++|++.+...++..++.++.+++.||+|+|+.+.++.+..++..++.++++|.+.+++.+++.|
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 34556666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 217 (487)
++.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ |+ ..|++.+...++.++..
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999986 56788899999888877 54 44555555555544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-11 Score=108.30 Aligned_cols=344 Identities=14% Similarity=0.148 Sum_probs=206.3
Q ss_pred HHHHHhh-cCCChhhHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 73 QAEIISD-LKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 73 ~~~i~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
.|.+.+. .|++.+|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-+..++-|+
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~ 106 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL 106 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 4555554 789988874 46666777788889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------hhHHHHHhhhHHHHHHHhhhhccCCCh
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (487)
+.+. ..+-.+++....|+++-.++.+...++.-+|..++..+|..+ +++...++......++++..+++|..+
T Consensus 107 ~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 107 ATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8865 778889999999999999999999888888888888888766 566666776666666777777788765
Q ss_pred HHHHhcCChHHHHHHHHHHhCCChhhhHHHH-HHHHHhhhccchh-------hhhHHHHhhcccchhHHHHHHHHHHHHh
Q 011388 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVN-EIKRSVASSSRRT-------AIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (487)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (487)
+-..-+++.++... ..+......+...+.. +.++..+..+... ..++++..+++. ++-..+.+....
T Consensus 186 ~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~----ll~WSlWWa~at 260 (412)
T PF01770_consen 186 RSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR----LLLWSLWWAFAT 260 (412)
T ss_pred cccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHHH
Confidence 43221111110000 0000000000000000 0000000111111 112233333433 333334444445
Q ss_pred hchhhHHhhHHHHHHhcCCC-chh----HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH--HHHHHHHHHHHHh
Q 011388 297 SGINGVLFYSSNIFANAGIS-SSN----VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM--AASFFLVSVAFFL 369 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 369 (487)
+++.-+..|...+.++..-+ ... ..-....+.+.++.+..|++-.++.+...+..+.... +..++++...
T Consensus 261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--- 337 (412)
T PF01770_consen 261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--- 337 (412)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 55667777777777766111 111 4445556677778888888866665544443333222 2223333221
Q ss_pred hcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 370 EGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
...|....+.+++...+.... ++...-++.....+.-|..+|+.++...+-+.+-.
T Consensus 338 ------------~~Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 338 ------------GNIWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 223444444444555444332 33333444445556667788877776665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=124.92 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=126.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
..+|.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+|.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 314 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344554555565 355777888999999999999999999999999999999999988888888999888899999999
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCCC
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (487)
+.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.++..++.++..+++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998888888888999999999999999999999988888777666 89999998887777776655555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=125.24 Aligned_cols=145 Identities=11% Similarity=0.028 Sum_probs=121.5
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHH--hhhhhHHHHHHHHHHhcChhHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLM--IAAVPNIIGWLIISFSKDSSFLFMGRL 146 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~ 146 (487)
..+|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+... .+.++.+++.+++.+.++++.+++.++
T Consensus 262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 456677778999999999999999999999999999999973 3444333 344445566667778889999999999
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHh
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~ 215 (487)
+.|++.+...+...+++.|.+|++++++..++++....+|..+||.+++.+ +|++.|++.++..++..+
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 599999888776655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=122.41 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=125.1
Q ss_pred cchhHHHHHhhcCCChh----hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHH
Q 011388 69 SSPTQAEIISDLKLTIS----EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (487)
Q Consensus 69 ~~~~~~~i~~~~~~s~~----~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (487)
..+..+.+.++.+.+.. ..+.+.+.+.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34555555555433333 24667777888889999999999999999999999998888888888888899999999
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
+++.|++.+...+...+.+.+..|+++||+.+++.+....+|..+||.+++.+ ||++.|++.++..++..+..+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 899999988877777655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=121.41 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=124.4
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
...|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444555555654 35667778888899999999999999999999999999999998888888999888899999999
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
+.+...+...+.+.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|.+.++..++..+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99988888888999999999999999999999999999999888776 899999988877766655444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-12 Score=119.97 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=128.7
Q ss_pred hhHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHH
Q 011388 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (487)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (487)
...|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+...++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345666666 8999999999999999999999999999999988888888888888888888888888888888999999
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHH-HHHHHhhhhccCCCh
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP-CTLLIPGLFFIPESP 224 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~-~~~~~~~~~~~~e~p 224 (487)
++.+...+...+++.|..|+++|+++.+++.....+|..+|+.+.+.+ |++..++..+.. .++..+....+||.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 998888888889999999999999999999999999999999888776 666666655544 344455556666653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=121.26 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=111.7
Q ss_pred cchhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH--HHHHH--hcChhHHHH
Q 011388 69 SSPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW--LIISF--SKDSSFLFM 143 (487)
Q Consensus 69 ~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~ 143 (487)
.....|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+
T Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
T TIGR00883 238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFF 317 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456554 6789999999999999999999999999999999999998876554444333 22222 246677778
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHH-HHHHHHHHHHHHHHhhhhh----h-hHHHHHhhhHHHH
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCT 211 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~-wr~~f~~~~~~~~ 211 (487)
..++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+ | |++.++..++..+
T Consensus 318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 318 LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 88999999989999999999999999999999998 4566678888888888776 5 8877666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=114.29 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=111.7
Q ss_pred chhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
+......+.+.+++ +.|.+..+ .......+..+++.++.|+++||+|||+.+..+.....++.+.+.+..
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~------- 94 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh-------
Confidence 34455555565554 56887766 556666788889999999999999999998888877776666555431
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhH
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFL 454 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~ 454 (487)
..+..+....+.+.... ...+....+..|..|+++|+++.|+.+...++|.+++|.+.+.+.+.++...+.
T Consensus 95 --------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~ 165 (395)
T PRK10054 95 --------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFW 165 (395)
T ss_pred --------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 11222222222222222 334556688889999999999999999999999999999999988766666777
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 011388 455 IYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~ 474 (487)
+.+++.++..++..+..++.
T Consensus 166 ~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 166 LAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 76666666555444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-11 Score=113.74 Aligned_cols=178 Identities=12% Similarity=0.041 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 011388 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (487)
+...+..++.+.........+....|.+.++.+.+..+ .......++..++.+..|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33445555555555555566677777777888887666 5666778888999999999999999999998888888777
Q ss_pred HHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHH
Q 011388 360 FFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM 439 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 439 (487)
.++..+.. ..+...+.-.+.+.+.+ +..|....+..|.+|+++|+++.++.+....+|..+++.
T Consensus 87 ~~~~~~~~---------------~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 87 STATMFAT---------------GPESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHhc---------------CHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766431 11222333333333332 334555678899999999999999999999999999999
Q ss_pred HhhhHhh-------hhcchhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 440 TANFLLD-------WSSGGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 440 ~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+.+++.+ .++...+.+.++..++..++.++++||++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 9998864 35666777777776666666666777765
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=119.71 Aligned_cols=153 Identities=15% Similarity=0.061 Sum_probs=114.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc--Ch-h-HHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DS-S-FLFMGRL 146 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r~ 146 (487)
...|.+.+++|.+....++......+...++.++.|+++||+|||++++.+..+.+++.++.+... +. . ....+.+
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 371 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 446888888999888788888888899999999999999999999999999999998887776442 22 1 2233444
Q ss_pred HHHHhhhh-cchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHhhhHHHHHHHh
Q 011388 147 LEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----------FVNWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 147 l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~~ 215 (487)
+.+++.+. ..+....++.|.+|+++|++++++.+....+|.++++.+.. ..+|++.|++.++.+++..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 451 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence 44544443 34677899999999999999999999988888887754432 23678888887766565544
Q ss_pred h-hhccCCC
Q 011388 216 G-LFFIPES 223 (487)
Q Consensus 216 ~-~~~~~e~ 223 (487)
. +++.||+
T Consensus 452 ~~~~~~~e~ 460 (479)
T PRK10077 452 FMWKFVPET 460 (479)
T ss_pred HHHhccccC
Confidence 4 4456775
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=116.76 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=121.0
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
..+|.+.++.|.+.++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346777778899999999999999999999999999999999999999988888777665443 2 3344567788898
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhcc
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
+.....|...+.+.|..|+++++...+..+...++|..+||.+++.+ +|++.|.+.+...++..+..+..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 88888899999999999988888888888888999999999998877 78899988777766655444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-11 Score=114.51 Aligned_cols=170 Identities=10% Similarity=-0.025 Sum_probs=120.0
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
..+.++...........+.|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+.+...++.++...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 33333333333345567788888888888666 5566778889999999999999999999998888888877776654
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
.. ..+.......+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+++.
T Consensus 108 ~~---------------~~~~l~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 108 SS---------------SLWAFALLWVLNAFFQGW-GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred Hh---------------HHHHHHHHHHHHHHHHHc-cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 112222222223333332 23555688899999999999999999999999999999999998
Q ss_pred h-hhcchhhHHHHHHHHHHHHHHHHhccc
Q 011388 446 D-WSSGGTFLIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 446 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+ .++...+.+.+++.++.+++..+.++|
T Consensus 172 ~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 172 LHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 566666766666655555444444444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=119.06 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=109.2
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH-HHHHHhcChhHHHHHHHHHHHhhh
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW-LIISFSKDSSFLFMGRLLEGFGVG 153 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~ 153 (487)
.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.++.. ......++.+.+.+..++.|+..+
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 4556789999999999999999999999999999999999999988877653333 233445667777777788888877
Q ss_pred hcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHh
Q 011388 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVL 205 (487)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-wr~~f~~ 205 (487)
...+....++.|.+|+++|++++|+.+....+|..++|++++.+ | |+..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 88888889999999999999999999999999999999998877 4 6555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=116.71 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=124.5
Q ss_pred hhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHH
Q 011388 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (487)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (487)
...|.+. +++|.+..+.+++.+.+.++..++.+..|+++||+|||+++.....+..+...+....+|.+.+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3456555 668999999999999999999999999999999999999999888877777777777888888888889999
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCC
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 222 (487)
++.+...+...++..|..| +++++..+.......+|..++|.+.+.+ ||+..+++.++..+++.+....+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9888888888888888775 4567788888888899999999888776 8898888877766666555554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-11 Score=112.54 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=114.2
Q ss_pred HHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 011388 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 379 (487)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
.....|.+.++.|.++.+ .......++..+++++.|++.||+|||+.+..+.++.+++.++....
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------- 105 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------- 105 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 334567777888887765 55566788888999999999999999999999988888776665542
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHH
Q 011388 380 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGI 458 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~ 458 (487)
...+...+...+.+.+.+ ...+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+ .++...+.+.+.
T Consensus 106 --~~~~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLIGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 111223333333333333 2345666888999999999999999999999999999999999988 566666776666
Q ss_pred HHHHHHHHHHHhcccCC
Q 011388 459 VCAFTVAFVSLWVPETK 475 (487)
Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (487)
+.++..+......||++
T Consensus 183 l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 183 MGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 55554444444456543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=118.52 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=107.1
Q ss_pred ccchhHHHH-HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhH--HHH------hhhhhHHHHHHHHHHhcCh
Q 011388 68 YSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG--SLM------IAAVPNIIGWLIISFSKDS 138 (487)
Q Consensus 68 ~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~--~~~------~~~~~~~~~~~~~~~~~~~ 138 (487)
......|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+..+..+........++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIP 312 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 334445544 5668999999999999999999999999999999999996 111 1111111111112222344
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHhhhHHHHHH
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLL 213 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-wr~~f~~~~~~~~~~ 213 (487)
+.......+.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |+..|++.++..++.
T Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 391 (399)
T TIGR00893 313 YAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIG 391 (399)
T ss_pred HHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHH
Confidence 444444444444444 7889999999999999999999999999999999999988876 5 999888877766665
Q ss_pred Hhh
Q 011388 214 IPG 216 (487)
Q Consensus 214 ~~~ 216 (487)
.+.
T Consensus 392 ~~~ 394 (399)
T TIGR00893 392 ALS 394 (399)
T ss_pred HHH
Confidence 443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-11 Score=113.31 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH-HHHHHhcChhHHHHHHHHHHHh
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW-LIISFSKDSSFLFMGRLLEGFG 151 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~ 151 (487)
.|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+... +..+..++. .+....++.+.+.++.++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34456668999999999999999999999999999999999887544 444444443 3445567888888899999999
Q ss_pred hhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 152 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
.+...+...+.+.+..| ++|++++++++....+|..+||.+++.+ |++..|++.+...++..+...
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 88877888888888876 6889999999988888888888888776 899999888877776654433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=110.56 Aligned_cols=180 Identities=10% Similarity=0.022 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 011388 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (487)
++..++..++.+...+..--.+..-.|.+.++.+++..+ ...+...+..-++..+.|.++||.+.|+.+..+++++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 344455666666555555556777788888888888777 667777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHH
Q 011388 359 SFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVT 438 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 438 (487)
..+++++.. ....+..+..+.+.+...-.|.+...+..-+|+++||+..++-|++.++|+.+.|
T Consensus 107 ~nil~Gfs~----------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 107 VNILFGFSP----------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHhhhh----------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 999998752 2233333444444444333455558888899999999999999999999999999
Q ss_pred HHh--hhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 011388 439 MTA--NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 439 ~~~--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
.+. +++.+ .+....|++-++++++.+++.++..+++.+
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999 88777 466677888888888888888888776543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=107.01 Aligned_cols=173 Identities=14% Similarity=0.083 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 011388 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (487)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (487)
..+.+.+..|......+...-.+|.+-++.+.+... .....++.+..++.++...+.||++||+++.....+..++.+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 355555566665566677788899999999998776 778888999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 362 LVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
+..+... .....+.-.+.+..- ..+.++..++..++.|+++|+++.++++....++..+|.+++
T Consensus 94 l~alAp~---------------f~~Ll~aR~~~g~a~-G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 94 LSALAPS---------------FAVLLLARALAGLAH-GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHhcc---------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 8887522 223333333333222 233456668999999999999999999999999999999999
Q ss_pred hhHhh-hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 442 NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 442 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
.++-| .|+..+|+..+.+.++..+..+..+|
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999 88889999999999999988888888
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=119.86 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=120.9
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-----c-----
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----K----- 136 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~----- 136 (487)
.......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++. +
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 334455778888999999889999999999999999999999999999999999988888887777621 1
Q ss_pred -ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHH
Q 011388 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (487)
Q Consensus 137 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~ 211 (487)
+...+....++.+.......+....++.|.+|+++|++++++.+...++|.++++.+.+.+ +|++.|++.++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 460 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV 460 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHH
Confidence 2223333333333333344566777889999999999999999999999999999887765 79988888777766
Q ss_pred HHHhhh-hccCCC
Q 011388 212 LLIPGL-FFIPES 223 (487)
Q Consensus 212 ~~~~~~-~~~~e~ 223 (487)
+..+.. ++.||+
T Consensus 461 ~~~i~~~~~~~~~ 473 (481)
T TIGR00879 461 LGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHheecccC
Confidence 654444 456665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=113.23 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=114.5
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-hhhhhHHHHHHHHHH-----hcChhHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISF-----SKDSSFLFMG 144 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~ 144 (487)
...|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.. .++.+...+.
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 4567777889999999999999999999999999999999999988764 333334443333332 2466777788
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhcc
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
.++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+++.+ ||+..+++.++..++..+...++
T Consensus 323 ~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 323 AIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 89999988776554 45667764 56899999999999999999999988776 88988888877776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-11 Score=114.24 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=115.6
Q ss_pred chhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
.......+.|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 103 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-------- 103 (398)
T ss_pred HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 3445566778888888887655 555666788899999999999999999999888877777666655321
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
..+...+...+.+.+. ....+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.
T Consensus 104 -------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 104 -------NVTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred -------chHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 1122222222322222 23345667899999999999999999999999999999999999888 55556666
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 011388 455 IYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~ 474 (487)
+.+++..+..++.....+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 176 VGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhhhHHHHHHHHHHHhCCCC
Confidence 66556665555555556654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=113.90 Aligned_cols=152 Identities=18% Similarity=0.105 Sum_probs=118.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcC-hhHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLEG 149 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G 149 (487)
..+|.+.+++|.+..+.|+..+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++ ...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 4466666778999999999999999999999999999999999999999988887777665554333 2222 235678
Q ss_pred HhhhhcchhHHHHHHhhCC-cCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhh-hhccCC
Q 011388 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~-~~~~~e 222 (487)
++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++.+++..+. ..+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888887777777775 57889999999999999999999888877 4778788777666655443 455666
Q ss_pred Ch
Q 011388 223 SP 224 (487)
Q Consensus 223 ~p 224 (487)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 54
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-11 Score=112.05 Aligned_cols=161 Identities=17% Similarity=0.046 Sum_probs=115.7
Q ss_pred hhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
.......|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---------- 91 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN---------- 91 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34444567777888887665 666677888999999999999999999999988887777776665431
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHH
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIY 456 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~ 456 (487)
..+...+...+.+.+. ....+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.
T Consensus 92 -----~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 -----NIETLLVLRFVQAFGA-SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred -----cHHHHHHHHHHHHcch-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 1122222222222222 22234556888999999999999999999999999999999999888 5666667777
Q ss_pred HHHHHHHHHHHHHhcccCCC
Q 011388 457 GIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~ 476 (487)
+++.++..+...+..||+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 166 SLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 77666666666566666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=115.18 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=111.8
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH---hc-ChhHHHHHHHHHHH
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-DSSFLFMGRLLEGF 150 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~-~~~~l~~~r~l~G~ 150 (487)
.+.+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.+.. .. +.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455678888877666666777778889999999999999999998887766555443322 22 34444556677788
Q ss_pred hhhhcchhHHHHHHhhCCcCccchhhHHHH-HHHHHHHHHHHHhhhhh------hhHHHHHhhhHHHHHHHhhhhccCCC
Q 011388 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (487)
Q Consensus 151 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (487)
+.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+ +|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888888999999999999988888854 44557888888887765 48888877777777766666666664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=117.11 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=109.9
Q ss_pred chhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHH--HHHhcChhHHHHHHH
Q 011388 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI--ISFSKDSSFLFMGRL 146 (487)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~ 146 (487)
...+|. +.+++|.+..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++...+.+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344664 55779999999999999999999999999999999999998877655444443322 233456667778888
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH-HHHHHHHhhhhh----------------hhHHHHHhhhHH
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----------------NWRVLAVLGVLP 209 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----------------~wr~~f~~~~~~ 209 (487)
+.|++.............|.+|+++||++.|+.+....+ |..++|.+.+.+ +|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888754443333446777999999999999999888886 656766555433 489888887666
Q ss_pred HHHHHhhhh
Q 011388 210 CTLLIPGLF 218 (487)
Q Consensus 210 ~~~~~~~~~ 218 (487)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 666544444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=122.70 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=109.4
Q ss_pred hhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh--cChhHHHHHHHH
Q 011388 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLL 147 (487)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l 147 (487)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..+..+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4567666 5899999999999999999999999999999999999999998877776665544433 333444455565
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhH
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~ 208 (487)
.+....+..+...+++.|.+|+++|++.+++.+....+|..+||.+++.+ ||+..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 55544455667788999999999999999999999999999999888776 78877655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=110.82 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=116.6
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (487)
..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.+++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555577999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhcchhHHHHHHhhCCcCccchhhHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH
Q 011388 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 152 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~ 213 (487)
.+...+....++.+. +++++++..+..+ ...++|..+||.+++.+ ++ ..|+..++..++.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 999999999998886 5666788888876 55677778888888777 55 3455555444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-10 Score=107.69 Aligned_cols=151 Identities=12% Similarity=0.147 Sum_probs=116.9
Q ss_pred HHHHHhhcCCChhhHHHHHH-HHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH---HHh-cChhHHHHHHHH
Q 011388 73 QAEIISDLKLTISEFSIFGS-LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLL 147 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 147 (487)
.|.+.+++|.+.++.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34556779999999999984 6678999999999999999999998877666555544332 333 455555556677
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhccCCC
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (487)
+.++.+...+...++..+..+++.+++..++.+...++|..+++.+.+.+ ||+..|.+.++.+++.++....++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666677788999999999999999999999999988777776665 89999998888888876666655543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-11 Score=111.88 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=115.1
Q ss_pred hhHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcC-hhHHHHHHHHH
Q 011388 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLE 148 (487)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 148 (487)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 445666665 8999999999999999999999999999999999999999988888888888888774 88889999999
Q ss_pred HHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 149 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+++.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.06 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=101.8
Q ss_pred hhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHH-HhhhhhHHHHHHHHHH--hcChhHHHHH
Q 011388 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIISF--SKDSSFLFMG 144 (487)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~~ 144 (487)
..+|.+. ++.|.+..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.+...+ .++.+...++
T Consensus 274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC 353 (452)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4566655 45799999999999999999999999999999999 555432 2223333333333323 2344555555
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHH-HHHhhhhh----hhHHHHHhhhHHHHHHHhhhhc
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~ 219 (487)
.++.|.+..........+..|.+|+++||++.|+.+....+|..+ +|.+.+.+ ||+..|++.+..+++.++....
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 566665443333334456789999999999999998887777554 67776655 8999998877766666554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-11 Score=115.61 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=122.0
Q ss_pred HHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 011388 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (487)
..+.............|.+.++.|.+..+ +......++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 88 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP- 88 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC-
Confidence 33333333455667788888888887555 667778899999999999999999999999988888877776665321
Q ss_pred hhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-h
Q 011388 369 LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W 447 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~ 447 (487)
..+.......+.+. ......+....+..|.+|+++|+++.++......+|..++|.+.+++.+ .
T Consensus 89 --------------~~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 89 --------------NLELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred --------------CHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 11222233322222 2233446667899999999999999999999999999999999999988 5
Q ss_pred hcchhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 448 SSGGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
++.+.+++.+.+.++..++..+..++++
T Consensus 154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 154 HWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred CceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 6666777766666666555555565543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=109.65 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=115.1
Q ss_pred chhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
+........|.+.++.|.+... .......++..++.++.|+++||+|||+.+..+.....++........
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-------- 89 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-------- 89 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--------
Confidence 3444556778888888887665 556666778889999999999999999999888877777766655321
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
..+.......+.+.+.+ ...+....+..|.+|+++|+++.+..+....++..++|.+.+.+.+ .++...+.
T Consensus 90 -------~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 90 -------TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred -------cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 11122222222222222 2234456888999999999999999999999999999999988876 55556677
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 011388 455 IYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+.+++.++..++.....+|++
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 777776666666666666654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=109.68 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=113.2
Q ss_pred hhHHhhHH-HHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 300 NGVLFYSS-NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 300 ~~~~~~~~-~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
.......| .+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~----- 84 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---SN----- 84 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---CC-----
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---hh-----
Confidence 33445556 555667777665 66677788899999999999999999999999888888874444422 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
.+..++..++.+.+. ....+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+++
T Consensus 85 -------~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 85 -------FWLLLIARFLLGIGS-GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred -------HHHHhhhcccccccc-ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 122333333333332 33456667899999999999999999999999999999999999987 566677888
Q ss_pred HHHHHHHHHHHHHHhcc
Q 011388 456 YGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (487)
.+++.++..++...+.+
T Consensus 157 ~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 157 SAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHHCCC-
T ss_pred ccchhhhhhhhHhhhhh
Confidence 88877777665444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=112.39 Aligned_cols=175 Identities=12% Similarity=0.057 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
+....+..+....-...+..-.|.+.++.+.+..+ +....+.++...+.+..|+++||+|||+.+..+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44444444444444556677788888888876544 6666677888888999999999999999999999888888777
Q ss_pred HHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhccc-CChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEI-LPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
.+... ..+..++.-.+.+.+.+ ...+.......+. .|+++|+++.|+......+|..++|.+.
T Consensus 88 ~~~a~---------------~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 88 AAFSP---------------TASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHcC---------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66531 12223333333333332 2334333445444 4778999999999999999999999999
Q ss_pred hhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 442 NFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 442 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+.+.+ .++.+.|++...++++..++..++.|+.+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99988 56667777777666666666666666643
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=108.77 Aligned_cols=161 Identities=13% Similarity=0.130 Sum_probs=116.5
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
........|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+..+.+++.++.....
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--------- 89 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--------- 89 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 345556778888888887665 667777899999999999999999999999998888887777665431
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
..+...+...+.+.+.+. ..+.......|..|+++|+.+.+.......++..++|.+.+.+.+ .++...+.+
T Consensus 90 ------~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 90 ------SYLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred ------cHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 112223333333332222 224444677888999899999999999999999999999999887 566667777
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 011388 456 YGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~ 475 (487)
.+.+.++..+......||.+
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 77766666555555566644
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-09 Score=97.59 Aligned_cols=319 Identities=16% Similarity=0.120 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcC
Q 011388 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (487)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 170 (487)
.++-...+.++.++.+.+.|+.|+|+.+.++...+....+..- -+|-+.++.+-.+.|+|.+..+.....+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 7788888889999999999999999999999999888777664 456777889999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhh------------hhH-H-------------HHHhhhHHHHHHHhhhhccCCCh
Q 011388 171 MRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWR-V-------------LAVLGVLPCTLLIPGLFFIPESP 224 (487)
Q Consensus 171 ~r~~~~~~~~~~~~~g~~~~~~l~~~~------------~wr-~-------------~f~~~~~~~~~~~~~~~~~~e~p 224 (487)
++.+..++.-.....+.++|..+-..+ +-+ + .+.+...+..+.++...+.|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998888888888886554332 111 1 11111111112222222333221
Q ss_pred HHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHh
Q 011388 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304 (487)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (487)
. . .+.+.. +....+......+++++++...+....+...+.. ......
T Consensus 215 ~-~---------------------------~~~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~---Sf~~~i 262 (461)
T KOG3098|consen 215 V-V---------------------------NCKSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLET---SFWISI 262 (461)
T ss_pred h-h---------------------------hhhhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH---HHHHhc
Confidence 0 0 000000 0000111112222333333222222222221111 111222
Q ss_pred hHHHHHHh--cCCCchh---HHHHHHHHHHHHHHhHHHHHhhh---ccchHHHHHHHHHHHHHHHHHHHHHHhhcccC--
Q 011388 305 YSSNIFAN--AGISSSN---VATFGLGVVQVVATGVNTWLMDK---AGRRLLLLISSSGMAASFFLVSVAFFLEGFVS-- 374 (487)
Q Consensus 305 ~~~~~~~~--~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 374 (487)
|...+.-. .+.+... ......+++.+++....+.+.+| +|+++.+.++..+..++.++.....+...+.+
T Consensus 263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t 342 (461)
T KOG3098|consen 263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT 342 (461)
T ss_pred cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence 22222111 1222222 34445567777777777777766 56778877777777666666665544443221
Q ss_pred -CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhH
Q 011388 375 -EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFL 444 (487)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 444 (487)
+....+........+...+.+.. -..+....+.++.... ++.|..+.+++-+-..+++.++-......
T Consensus 343 ~~~~~~~~~~~~~~~ii~~l~G~~-D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 343 DSPPLLFTPSYYLALIIGFLLGFG-DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred cccccccccchhHHHHHHHHHhhH-HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 12222233322333333333322 2334445567777777 45688999998888888887766665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=109.86 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=133.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHhhhhhHHHHHHHHHH--------hcChhHHH
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF--------SKDSSFLF 142 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~ 142 (487)
...-.+++|++..+...+.-+..+..++|.+++|++.||+|.| +++..+++++.+..+...+ .++.+.+.
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 4445668999999999999999999999999999999999999 9999999888776666666 67888999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhhh
Q 011388 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 143 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~ 217 (487)
+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||.+.+.+ +-|+.+....++.++.+++.
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877 47888887777777777777
Q ss_pred hccCCC
Q 011388 218 FFIPES 223 (487)
Q Consensus 218 ~~~~e~ 223 (487)
++++.+
T Consensus 465 ~~v~~~ 470 (477)
T PF11700_consen 465 FFVDVE 470 (477)
T ss_pred hhccch
Confidence 776653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=110.28 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=118.0
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
.....+...........+.|.+.++.|.+... .......++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 94 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL 94 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444556677889999988988766 4555566778899999999999999999988877776666655443
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
. . ..+...+...+.+.+.+ ...|....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.
T Consensus 95 ~---~------------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 95 S---G------------TLNELLLARVLQGVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred h---C------------CHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2 1 11222233333333322 234556678889999999999999999999999999999999998
Q ss_pred h-hhcchhhHHHHHHHHHHHHHHHHhccc
Q 011388 446 D-WSSGGTFLIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 446 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
+ .++.+.+.+...+..+..+......++
T Consensus 159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 159 EYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 555566766666666555555555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-10 Score=106.58 Aligned_cols=157 Identities=12% Similarity=0.034 Sum_probs=109.8
Q ss_pred HHhhHHHH-HHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 302 VLFYSSNI-FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 302 ~~~~~~~~-~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
...+.+.+ .++.|.+... .......+...+..++.|+++||+|||+.+..+.....++.+.+....
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~----------- 97 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH----------- 97 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 33444444 4566887665 555555677778889999999999999999998888888777765420
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHH
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 458 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~ 458 (487)
..+...+...+.+.+. ....|...++..|.+|+++|+++.|+.+....+|..++|.+.+.+.+.++...+++.+.
T Consensus 98 ----~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~ 172 (400)
T PRK11646 98 ----EPWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAV 172 (400)
T ss_pred ----cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1122223332333222 22335556788899999999999999999999999999999999987666666777666
Q ss_pred HHHHHHHHHHHhcccC
Q 011388 459 VCAFTVAFVSLWVPET 474 (487)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (487)
++++..++..+..++.
T Consensus 173 ~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 173 LFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 6665555545555553
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=97.95 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=121.0
Q ss_pred cchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-------cChhHH
Q 011388 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-------KDSSFL 141 (487)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l 141 (487)
++..-|++++.+|.|.+|...+.+.-.+|..+ +++.|.+.|++|+|.++.+|.+...+|..+...+ .++|.+
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 33445689999999999999999999999987 5889999999999999999999999988887664 467888
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---h-hHHHHHhhhHHHHHHHhhh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~-wr~~f~~~~~~~~~~~~~~ 217 (487)
.+..++.|.+.+....+......+.+| ++||++.|+.-...+++..+-..+...+ + -+..+.....+.++.++..
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~ 178 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAM 178 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh
Confidence 888888888887777777777778897 5799999999999999988776666555 2 3344444444555555555
Q ss_pred hccCCCh
Q 011388 218 FFIPESP 224 (487)
Q Consensus 218 ~~~~e~p 224 (487)
++++..|
T Consensus 179 ~~vr~~~ 185 (250)
T PF06813_consen 179 FFVRPVP 185 (250)
T ss_pred hheeccC
Confidence 5555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=110.34 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=112.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHH
Q 011388 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (487)
Q Consensus 81 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 160 (487)
+.+..+.|++.++..+...++.+..|++.||+|||+.+.++.++.+++..+.+.++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888888889999999999999999877766777
Q ss_pred HHHHhhCCcCccchhhHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH
Q 011388 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~ 213 (487)
.+..+..+++.++...+. .+....+|..+++.+++.+ ||+..|.+.++..++.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 778888888888777666 6678888999998888776 8898888877665544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=111.29 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=98.3
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (487)
..+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..++.+.....++.....+.-++.|+
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK12307 252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL 331 (426)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 34677777789999999999999999999999999999999999999998888777666555443332222222233333
Q ss_pred --hhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 151 --GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 151 --~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
+..+..+....++.|.+|+++|++++|+......+|..++|.+.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 332 MATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 22333455667889999999999999999999999999999988777
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-10 Score=106.51 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=111.9
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
........+.+.++.+.+... .......++..++.++.|+++||+|||+.+..+.....++........
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------- 99 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--------- 99 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc---------
Confidence 334444556677788887665 556667788899999999999999999999888877777666654421
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
..+.......+.+.+.+ ...+.......|.+|+++|..+.++......++..++|.+.+.+.+ .++...+.+
T Consensus 100 ------~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 100 ------SIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ------cHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 11122222222222222 2234556778899999999999999988888999999999999888 566666777
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 011388 456 YGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~ 475 (487)
.+++.++..+......||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 77776666555555566654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=109.55 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=126.8
Q ss_pred chhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHH
Q 011388 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (487)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (487)
...+|.+. +++|.++...|++.+++.+|..++.+..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34577765 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH
Q 011388 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 149 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~ 213 (487)
|++.........+.+.+..|++.|||+++++.+....+..+|..+.+.+ |-+..+.+.++..++.
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999998889999999999999999999999988888888887777766 7777777766544444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-10 Score=108.02 Aligned_cols=157 Identities=13% Similarity=-0.034 Sum_probs=104.9
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
......+.|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.+...++.++.....
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------- 122 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--------- 122 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc---------
Confidence 344556677888888987666 445556677888999999999999999998887777776665555421
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh----------
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD---------- 446 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~---------- 446 (487)
..+...+..++.+.+.+ ...+ ...++.|.+|+++|+.+.|+.+...++|..+++.+.+.+.+
T Consensus 123 ------s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 123 ------SATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred ------CHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 11122222223333222 2222 33567899999999999999998888888888777665532
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 447 WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
.++...+.+.+++.++.+++..++.+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 24556677777777666655555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-10 Score=104.29 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=107.6
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
...+.+++-..+++.+..+.. ......-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 334455555556666543332 45555567778888899999999999999888877776666665543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH-HHHHHHHHHHHHHHhhhHhh-hhcchhhH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WSSGGTFL 454 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~-~~~~~~~~ 454 (487)
+.+|..+..=.+-+...+..+..+. +|++...|++.++++.++. .....+|-.+|.+++|.+.+ .+....|.
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 2334444444444444444444444 8999999999999999998 45567899999999999888 66667777
Q ss_pred HHHHHHHHHHHHHH
Q 011388 455 IYGIVCAFTVAFVS 468 (487)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (487)
++++.|++.+++..
T Consensus 531 ~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 531 IFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777776665443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=105.54 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=109.9
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
......|.+.++.+.++.. .......++..++.++.|+++||+|||+.+..+.....++.+..... .
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~-------- 94 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---H-------- 94 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c--------
Confidence 3334467777888887666 56667788899999999999999999999988877777666655432 1
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHH
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYG 457 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~ 457 (487)
..+...+...+.+.+.+ ...+....+..|.+++++++.+.+..+....++..++|.+.+.+.+ .++...+.+.+
T Consensus 95 ----~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 95 ----SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred ----cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 11122222222222222 1224445677788888899999999999999999999999999888 56666666666
Q ss_pred HHHHHHHHHHHHhcccCC
Q 011388 458 IVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (487)
+..++..++..++.||++
T Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 170 LLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 666555555555666654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-10 Score=105.89 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=110.8
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH------hcChhHHHHH
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------SKDSSFLFMG 144 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 144 (487)
..+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 3445556789999999999888764 66777899999999999999998877766443332221 1333444555
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCc-CccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhh
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~ 216 (487)
..+.+++.+...+...+...+..++ +++++.+++.+...++|..++|.+++.+ ||+..|++.++..++..+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 6667777788888888888888776 7889999999999999999999998876 7888888877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=106.89 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=109.3
Q ss_pred hHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhH
Q 011388 305 YSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSI 382 (487)
Q Consensus 305 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (487)
-+|.+.++.+.+... .....+.++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--------------- 102 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--------------- 102 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC---------------
Confidence 334555666776555 566667788899999999999999999999988877777666555421
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHH
Q 011388 383 LGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCA 461 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~ 461 (487)
..+..++.-++.+.+.+ ...+....+..|.+|+++++++.++.+....++..++|.+++.+.+ .++...|.+.+++.+
T Consensus 103 ~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 103 SMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181 (413)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11222333333333222 2234445778899999999999999999999999999999998887 466677777777666
Q ss_pred HHHHHHHHhcccCC
Q 011388 462 FTVAFVSLWVPETK 475 (487)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (487)
+..+...+..||++
T Consensus 182 i~~~~~~~~lp~~~ 195 (413)
T PRK15403 182 IAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHhCCCCc
Confidence 66555555667654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=109.56 Aligned_cols=177 Identities=11% Similarity=-0.021 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
++...+................|.+. +.|.+..+ .......++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 107 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL 107 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence 33443333333333333444556554 45777665 6666778889999999999999999999888887777776665
Q ss_pred HHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhh
Q 011388 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 442 (487)
+....... ...+.......+.+.+.+. ..+.....+.|.+|+++|++++++.+....+|+.++|.+.+
T Consensus 108 ~~~~~~~~-----------~~~~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 108 MGFVPWAT-----------SSIAIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred Hhcccccc-----------chHHHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 54321000 0111122222233333332 23444577789999999999999999999999999998887
Q ss_pred hHhh--hhcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 443 FLLD--WSSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 443 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
...+ .++...+++.+++.++..++.+++.||+
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6554 3555667777777666666556666553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=103.22 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=142.4
Q ss_pred HHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH
Q 011388 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (487)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 129 (487)
...++..-..+.+|.+. .++..--.-.+++|++..+...+.-.-.+..+++.+++|+|.||+|.|+++..++++..+.+
T Consensus 254 i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 254 LVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred hHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 33444444445555543 22222223345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH
Q 011388 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAV 204 (487)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~ 204 (487)
+..-+...-..+.++-.+.|.+.|+.+..+.++..+..|++|-++.+|+++...-.+..+||.+.+.+ +-|.-+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 98888888888889999999999999999999999999999999999999999999999999988776 5676666
Q ss_pred hhhHHHHHHHhhhhccCCC
Q 011388 205 LGVLPCTLLIPGLFFIPES 223 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~ 223 (487)
...++..+.++..+.+|+.
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 6666666667777777754
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=112.85 Aligned_cols=136 Identities=16% Similarity=0.117 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcCh--hHHHHHHHHHHHhhhhcchhHHHHHHhh
Q 011388 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (487)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 166 (487)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345566777889999999999999999999999999998888887655 4555666777788888888899999999
Q ss_pred CCcCccchhhHHHHHHHHHHHHHHHHhhhhh--hhHHHHHhhhHHHHHHHhhhhccCCCh
Q 011388 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (487)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (487)
+|++.|++++|+.+....+|.+++|.+.+.. ++..++++.+...++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988732 556777777777777766677888863
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=104.19 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=104.0
Q ss_pred chhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011388 298 GINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFV 373 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
.++.+..+++.++.+ .|++... ...........++.+++|+++||+ |||+.+..+.++..++.+++.... .
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~---~-- 98 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE---I-- 98 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---c--
Confidence 455666677777654 5787665 455566677788999999999999 999999999888888776554210 0
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh--hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcc
Q 011388 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN--IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 450 (487)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~ 450 (487)
........+.+...+.+ ...+...++..|.+|++ .|+++.++.....++|+.++|.+.+++.+ .++.
T Consensus 99 ---------~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 99 ---------HPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred ---------chhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 00111222222222222 22344458899999875 69999999999999999999999999987 6666
Q ss_pred hhhHHHHHHHHHH
Q 011388 451 GTFLIYGIVCAFT 463 (487)
Q Consensus 451 ~~~~~~~~~~~~~ 463 (487)
..|.+.++..+++
T Consensus 169 ~~F~iaaigm~l~ 181 (493)
T PRK15462 169 MGFGLAAVGMIAG 181 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-10 Score=105.59 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=113.6
Q ss_pred HhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 011388 303 LFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 380 (487)
Q Consensus 303 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (487)
....|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+.+...++........
T Consensus 11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~------------- 77 (377)
T PRK11102 11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ------------- 77 (377)
T ss_pred hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 34566777777887665 566677888999999999999999999999988888877777665431
Q ss_pred hHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHH
Q 011388 381 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIV 459 (487)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~ 459 (487)
..+.......+.+.+. ....+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+
T Consensus 78 --~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 78 --TIDQLIYMRFLHGLAA-AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred --cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 1122222222323222 22334555888999999999999999999999999999999999888 5565667777776
Q ss_pred HHHHHHHHHHhcccC
Q 011388 460 CAFTVAFVSLWVPET 474 (487)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (487)
.++..++..+..+|+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 155 AILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHhCCcc
Confidence 666666555666654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=103.55 Aligned_cols=151 Identities=12% Similarity=0.103 Sum_probs=103.8
Q ss_pred hhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchh
Q 011388 304 FYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381 (487)
Q Consensus 304 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (487)
...+...++.+.++.. .......+...+..++.|+++||+|||+++..+..+..++.+.+....
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-------------- 89 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-------------- 89 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--------------
Confidence 3344455666665544 556667788999999999999999999999998888776665544320
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHHHHH
Q 011388 382 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCA 461 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~ 461 (487)
. . .+...+ .+.......|...+++.|.+|+++|++++|+.+....++..+||.++|.+.+..+...+.+.+.+.+
T Consensus 90 -~-~--~~~r~l-~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~ 164 (393)
T PRK11195 90 -H-P--LLAYGL-VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYL 164 (393)
T ss_pred -H-H--HHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 122222 2333344557777999999999999999999999999999999999999998654333433333332
Q ss_pred HHHHHHHHhcccC
Q 011388 462 FTVAFVSLWVPET 474 (487)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (487)
+. .+..+.+||.
T Consensus 165 ~~-~~~~~~l~~~ 176 (393)
T PRK11195 165 LA-ALFNLFIPRL 176 (393)
T ss_pred HH-HHHHhcCCCC
Confidence 22 3334455553
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=102.49 Aligned_cols=158 Identities=13% Similarity=-0.019 Sum_probs=108.5
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
......|.+.++.+.+..+ .......++..++.+..|+++||+|||+.+.........+....... .
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~-------- 77 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP---F-------- 77 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh---c--------
Confidence 4455677888888888766 55666678889999999999999999887655443333322111110 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHH
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYG 457 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~ 457 (487)
......+.-.+.+.+.+ ..+.......|.+|+++|+++.++.+....+|..+++.+.+++.+ .++...+.+.+
T Consensus 78 ----~~~~l~~~R~l~G~g~~--~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 78 ----NYEWLLACQLLAALGQP--FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred ----cHHHHHHHHHHHHhHhH--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 11222333333333332 223334556889999999999999999999999999999999887 56666777777
Q ss_pred HHHHHHHHHHHHhcccCC
Q 011388 458 IVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (487)
++.++..++.++.+||.+
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 877777777777777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-09 Score=100.88 Aligned_cols=133 Identities=16% Similarity=0.025 Sum_probs=95.6
Q ss_pred chhhHHhhHHH-HHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011388 298 GINGVLFYSSN-IFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVS 374 (487)
Q Consensus 298 ~~~~~~~~~~~-~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (487)
.......+.|. +.++.|.+... .......++..++.++.|+++||+|||+.+..+.++..++.++......
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------ 89 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------ 89 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh------
Confidence 34556667775 55677887766 6667778899999999999999999999999988888887777665310
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 375 EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
..+...+...+.+.+ . +..+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+
T Consensus 90 --------~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 90 --------SYSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred --------hHHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 112222233232322 2 2233445788999999999999999998888888888887776654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=105.05 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=110.7
Q ss_pred HHHHHHhhchhhHHhhHHHHHHh---cCCCchh--HHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLV 363 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~ 363 (487)
...+..-..++....+++.++++ .|.+..+ .......++..++.+++|+++|| +|||+.+..+.++.+++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 33444334456667777777765 5776555 66667788899999999999999 899999999998888887777
Q ss_pred HHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhh---hhhHhHHHHHHHHHHHHHHHHH
Q 011388 364 SVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI---KSLAGSVATLANWLVSWIVTMT 440 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~i~~~~ 440 (487)
.+.. ..+...+...+.+.+. ....|...++..+.+|+++ |+++.++.+...++|.+++|.+
T Consensus 97 ~~~~---------------~~~~~~~~~~l~g~g~-g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 97 AMSI---------------YPDLIFYGLGTIAVGS-GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred Hhcc---------------cHhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence 6421 1112222333322222 2234555678888888654 8889999999999999999999
Q ss_pred hhhHhh-hhcchhhHHHHHHHHHH
Q 011388 441 ANFLLD-WSSGGTFLIYGIVCAFT 463 (487)
Q Consensus 441 ~g~~~~-~~~~~~~~~~~~~~~~~ 463 (487)
.+++.+ .++...+.+.++..++.
T Consensus 161 ~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 161 AGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHH
Confidence 999988 56666666665444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-10 Score=106.73 Aligned_cols=152 Identities=12% Similarity=-0.019 Sum_probs=99.1
Q ss_pred hhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH--H--hcChhHHHHHH
Q 011388 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDSSFLFMGR 145 (487)
Q Consensus 71 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r 145 (487)
..+|. +.+++|.+..+.++..+...++..+++++.|+++||+|||+++.++.++.++...... . .++....+..-
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555 4566899999999999998899999999999999999999988776655443332221 1 12333222222
Q ss_pred HHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH-HHHHHHHhhhhh---h-hHHHHHhhhHHHHHHHhhhhcc
Q 011388 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 146 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~---~-wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
.+.+++.+...+....++.|++|++.|+++.|+.+...++ .....|.+...+ | |...++..++..++..+..+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 2233333344455678889999999999999998765443 233466655544 3 5566666666666655555554
Q ss_pred CC
Q 011388 221 PE 222 (487)
Q Consensus 221 ~e 222 (487)
++
T Consensus 424 ~~ 425 (432)
T PRK10406 424 HR 425 (432)
T ss_pred hh
Confidence 43
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=107.79 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=113.6
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
........|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++..++.++..+..
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 81 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------- 81 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------
Confidence 344555667777777887665 666777889999999999999999999999998888887777766541
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHH-HhhhHhh-hhcchhhH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM-TANFLLD-WSSGGTFL 454 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~-~~g~~~~-~~~~~~~~ 454 (487)
..+...+...+.+ .......+...++..|.+|+++|+++.++.+....+|..++|. +.+.+.+ .++...+.
T Consensus 82 ------~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 ------SLWVMAALWALNG-IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred ------hHHHHHHHHHHHH-hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 1122233333333 2333345666789999999999999999999999999999994 5555555 45555666
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 011388 455 IYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~ 474 (487)
+.+.+.++..++..+..+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHHheeeCCC
Confidence 66666666555555555543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=104.25 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=99.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcchhHHH
Q 011388 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVISYTVPV 161 (487)
Q Consensus 83 s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 161 (487)
+..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.+...+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888999999999999999999999999999999888888777765 35677778889999999999999999
Q ss_pred HHHhhCC-------cCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 162 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999998887765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-09 Score=98.59 Aligned_cols=130 Identities=11% Similarity=-0.044 Sum_probs=85.0
Q ss_pred HHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 302 VLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 302 ~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
.....+.+-+ +.+++..+ ....+..+...++++..|++.||+|.|+++..+.+...+..+...+.......
T Consensus 53 ~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~------ 126 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT------ 126 (462)
T ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC------
Confidence 3333444444 57888766 55666778888999999999999999999988888877777666543110000
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhh
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF 443 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 443 (487)
..+..++...+.+.+ .+..+.....+++.+|+++||++.|+....+++|..+++.+...
T Consensus 127 ----s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 127 ----PFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred ----CHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111222222222222 22335556888999999999999999977777777666555544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-09 Score=97.88 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=121.3
Q ss_pred HHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH
Q 011388 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (487)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 129 (487)
.+.+.+.++.-+.|. ..+...-..+-++-|++..+..++.........+..+++..+.||+|||+.++.+..+..+..
T Consensus 272 ~i~~~v~~~qq~sGi--~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 272 LIGIVVSFAQQFSGI--NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHHHHHHhcCc--ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 344444444433333 333444557888889999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhc---Chh------HHHHHHHHHHHhhh-hcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHH----Hhhh
Q 011388 130 LIISFSK---DSS------FLFMGRLLEGFGVG-VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY----LLGL 195 (487)
Q Consensus 130 ~~~~~~~---~~~------~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~----~l~~ 195 (487)
+++...- +.. ..+++.++..++.+ +.-|...-+.+|.+|++.|..++++.....-+..++-. ++..
T Consensus 350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~ 429 (485)
T KOG0569|consen 350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN 429 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776642 111 12344444443333 34678889999999999999999988877777665543 3333
Q ss_pred hhhhHHHHHhhhHHHHHH-HhhhhccCCCh
Q 011388 196 FVNWRVLAVLGVLPCTLL-IPGLFFIPESP 224 (487)
Q Consensus 196 ~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p 224 (487)
.+|= +.|++.++++++. +..++.+||+.
T Consensus 430 ~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 430 VIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred Hhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 3343 5555555555554 55667799984
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=108.38 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=142.2
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHhhhhhHHHHHHHHHHhcChhHH
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (487)
+...+....+|...++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++.+.+.++++++.+
T Consensus 312 ~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l 391 (509)
T KOG2504|consen 312 LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL 391 (509)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44445556688999999999999999999999999999999999999988 5667778889999999999999999999
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHhh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~ 216 (487)
...-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++.+ +|...|+.+++..++....
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999977 5999999988888877766
Q ss_pred hhccC
Q 011388 217 LFFIP 221 (487)
Q Consensus 217 ~~~~~ 221 (487)
++..|
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 66665
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=100.54 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=98.8
Q ss_pred HHHHhhcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHH---HHh-cChhHHHHHHH--
Q 011388 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRL-- 146 (487)
Q Consensus 74 ~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~-- 146 (487)
+.+.+++|.++++.+++.+... ++..++.++.|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+.+.-+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4567789999999999987654 5689999999999999999998887777666554433 344 45565555554
Q ss_pred --HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh----hhhhHHHHHhhhHHHHHHHhhhhcc
Q 011388 147 --LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----FVNWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 147 --l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
..|++.+...+....++.+.+|.++++ +.+...++|..+++.+++ .+||+..|.+.++.+++.++..+..
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777665554 444444455543334444 4499999999888877776555443
Q ss_pred C
Q 011388 221 P 221 (487)
Q Consensus 221 ~ 221 (487)
+
T Consensus 390 ~ 390 (402)
T PRK11902 390 R 390 (402)
T ss_pred h
Confidence 3
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-09 Score=99.98 Aligned_cols=149 Identities=13% Similarity=-0.008 Sum_probs=102.1
Q ss_pred HHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHH
Q 011388 306 SSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSIL 383 (487)
Q Consensus 306 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (487)
.+.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+.....++.+...... .
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------------~ 93 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE---------------S 93 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc---------------C
Confidence 34456677887666 566677888899999999999999999999888777766665554321 1
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHH
Q 011388 384 GILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAF 462 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~ 462 (487)
.+...+...+.+.+.+ ...+....+..|.+|+++++...+..+....++..++|.+.+.+.+ .++...+.+.+.+.++
T Consensus 94 ~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1122222222222221 1123344678889999989999999999999999999999999988 5555666666666655
Q ss_pred HHHHHHHh
Q 011388 463 TVAFVSLW 470 (487)
Q Consensus 463 ~~~~~~~~ 470 (487)
..+.....
T Consensus 173 ~~~~~~~~ 180 (401)
T PRK11043 173 LILPTLRL 180 (401)
T ss_pred HHHHHHHc
Confidence 55444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=105.55 Aligned_cols=129 Identities=15% Similarity=0.262 Sum_probs=102.8
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHh-hhhhHHHHHHHHHHhcChh-------
Q 011388 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMI-AAVPNIIGWLIISFSKDSS------- 139 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~~~~-~~~~~~~~~~~~~~~~~~~------- 139 (487)
..+.+.+++|++....+.+--..-+...+.||+.|..+| ||||||.++. +.....++.++..++.++.
T Consensus 54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~ 133 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE 133 (498)
T ss_pred cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence 455677788999999998888889999999999999999 6898777666 5555666777777764332
Q ss_pred ----------HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccch-hhHHHHHHHHHHHHHHHHhhhhhhhH
Q 011388 140 ----------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLGLFVNWR 200 (487)
Q Consensus 140 ----------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~~~wr 200 (487)
.++++--+.-++.......+.+++.|...++++.+ +.+.+....++|..+|..++.+.+|+
T Consensus 134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 44445555556666788889999999998777766 99999999999999999999888776
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=102.05 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=96.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-----------cCh
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----------KDS 138 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----------~~~ 138 (487)
...|.+.+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4456666669999999999888766 6788999999999999999999998888888776655543 345
Q ss_pred hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHH
Q 011388 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184 (487)
Q Consensus 139 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 184 (487)
+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 7778889999999999999999999999999999999999887654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=104.51 Aligned_cols=181 Identities=14% Similarity=0.043 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
...+.+....+..--+.+..-.+..-+..+.++.. +......+...+++++.|++.||++|++++.+|..+-.++.+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 33444444444444445555455554445665554 7788888999999999999999999999999998888888777
Q ss_pred HHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhh
Q 011388 363 VSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 442 (487)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 442 (487)
-++.. ..|...+.-.+.+.+- ..+.|+..++++|.+|.+.|++++++.+....+|..+|-...+
T Consensus 115 ~~fs~---------------~Fwq~~l~R~~vGiGe-As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 115 SGFSN---------------HFWQVLLCRGFVGIGE-ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHH---------------HHHHHHHHHHHhccch-hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 77651 2234445555555444 3456788899999999999999999999999999999998888
Q ss_pred hHhh-h-hcchhhHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011388 443 FLLD-W-SSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEE 481 (487)
Q Consensus 443 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
.+.+ . .+.+.+...+++.++..++..++.+|++++..+|
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 8877 2 2566788888888888888888888876544333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=107.89 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=102.6
Q ss_pred hHHHHHhhcCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcC--
Q 011388 72 TQAEIISDLKLTISEFSI------------FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-- 137 (487)
Q Consensus 72 ~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-- 137 (487)
..|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777788876543211 233445566778899999999999999999888887777666554321
Q ss_pred --hhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-h-------------hHH
Q 011388 138 --SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N-------------WRV 201 (487)
Q Consensus 138 --~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-~-------------wr~ 201 (487)
...+...-+...++..+..+....+..|.+|.+.|+++.++.+....+|.++++.+.+.+ + +..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 111111112222222334556677889999999999999999999999999998776554 2 345
Q ss_pred HHHhhhHHHHHHHhhhhccCCCh
Q 011388 202 LAVLGVLPCTLLIPGLFFIPESP 224 (487)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~p 224 (487)
.|++.++..++..+..+++||+.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 56666665555555556789874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-09 Score=101.11 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=102.6
Q ss_pred chhhHHhhHHHHHH-hcCCCchh--HHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011388 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFV 373 (487)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (487)
.++....+++.+++ +.|.+... ...........+..+++|+++|| +|||+.+..+.++..++.+.+.+....
T Consensus 29 ~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~---- 104 (489)
T PRK10207 29 GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK---- 104 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 34555555555554 46776655 33444455566667799999999 999999999999998888777753100
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh--hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcc
Q 011388 374 SEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN--IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSG 450 (487)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~ 450 (487)
.....+...+.+ .......|...+++.|.+|++ +|+.++++.....++|..++|.+.|++.+ .+++
T Consensus 105 ----------~~ll~~~~~l~~-ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~ 173 (489)
T PRK10207 105 ----------PDLIFIALGTIA-VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS 173 (489)
T ss_pred ----------hhHHHHHHHHHH-hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 011222222222 222334455668999999877 45788999999999999999999999988 5555
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 011388 451 GTFLIYGIVCAFTVAFVSL 469 (487)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (487)
..|++.++ .++..++.+.
T Consensus 174 ~~F~i~~i-~~~~~~~~~~ 191 (489)
T PRK10207 174 VTYNLCGA-GLIIALLVYF 191 (489)
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 55655433 3333333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=85.34 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=94.9
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCccc
Q 011388 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 404 (487)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (487)
..++..++.+..+++.||++||+.+..+.....++.+..... . ..+.......+.+.+.+ ...+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~g~~~~-~~~~ 70 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---S------------NITVLIIARFLQGFGAA-FALV 70 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHHHHHHHHH-HHHH
Confidence 456788899999999999999999888877777666655432 0 11222222333333222 2335
Q ss_pred chhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhccc
Q 011388 405 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
....+..|..|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+..+..+......||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 566888999999999999999999999999999999999988 455566666666666666655555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-07 Score=95.01 Aligned_cols=149 Identities=12% Similarity=0.160 Sum_probs=121.5
Q ss_pred cchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhhHHHHHHHHHHhcC--------hh
Q 011388 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SS 139 (487)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~ 139 (487)
.......+.+.+|.+.++...+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. ..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 3445556777899999999999999999999999999999996 69999999999999999988877531 12
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCc---cchhhHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHh
Q 011388 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVL 205 (487)
Q Consensus 140 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~-----------~wr~~f~~ 205 (487)
..+++-.+.++|.|+.-|+..+...|.+++++ |...+.++..+.++|.++++.+..++ +|...|.+
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 36677888899999999999999999997643 56678888999999999887776554 38888888
Q ss_pred hhHHHHHHHhhh
Q 011388 206 GVLPCTLLIPGL 217 (487)
Q Consensus 206 ~~~~~~~~~~~~ 217 (487)
.++..++.++..
T Consensus 167 ~~i~m~ia~lvf 178 (654)
T TIGR00926 167 PAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHH
Confidence 877766665443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=96.89 Aligned_cols=133 Identities=14% Similarity=-0.025 Sum_probs=97.0
Q ss_pred hhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
.......|.+.++.+.+..+ .......++..++++..|++.||+|||+.+..+..+.+++..++.......
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~------- 92 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM------- 92 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 44456668877788887666 667777899999999999999999999999999998888876654321111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
..+..+...++.+.+.+... +....+..+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 93 -----~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 93 -----NYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -----cHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333333333322 333467778889999999999999999999999999998774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=100.70 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=96.7
Q ss_pred hchhhHHhhHHHHH-HhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011388 297 SGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGF 372 (487)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (487)
..++....+++.++ ++.|.+... ..............+++|+++|| +|||+.+..+.++..++..++.+.. .
T Consensus 35 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~---~- 110 (500)
T PRK09584 35 FGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG---H- 110 (500)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc---c-
Confidence 34455666666666 456887665 22323333334445689999999 5999999999888887766665421 0
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhh--hhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhc
Q 011388 373 VSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLD-WSS 449 (487)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~ 449 (487)
......+...+.+.+.+ ...+...++..|.+|++. ++.+.++.+...++|..++|.+.|++.+ .++
T Consensus 111 ----------~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 111 ----------DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred ----------cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 01122222223333222 234555578899887643 4567888899999999999999999988 566
Q ss_pred chhhHHHHHHHHH
Q 011388 450 GGTFLIYGIVCAF 462 (487)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (487)
...|.+.++...+
T Consensus 180 ~~~F~i~~i~~~i 192 (500)
T PRK09584 180 SVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665543333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=96.50 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=125.1
Q ss_pred ccccccchhHHHHHhhcC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh-cChhHH
Q 011388 64 FTCGYSSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFL 141 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l 141 (487)
...+.+....+...+|.| .+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+..
T Consensus 221 ~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~ 300 (400)
T PF03825_consen 221 ISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFI 300 (400)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 333444455566677777 677788988889999999999999999999999999999999999998888887 555544
Q ss_pred HHH----HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHH-HHHHHHHHHHHhhhhh----------hhHHHHHhh
Q 011388 142 FMG----RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----------NWRVLAVLG 206 (487)
Q Consensus 142 ~~~----r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~~----------~wr~~f~~~ 206 (487)
.+. ..+.|+..+..+.+...++.+..|++.|+++.+++++ ..++|..+|..+++++ .|...+.+.
T Consensus 301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~ 380 (400)
T PF03825_consen 301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF 380 (400)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 433 4569999999999999999999999999999999876 4689999999998877 355566666
Q ss_pred hHHHHHHHh-hhhccCC
Q 011388 207 VLPCTLLIP-GLFFIPE 222 (487)
Q Consensus 207 ~~~~~~~~~-~~~~~~e 222 (487)
+...++..+ .+.+.+|
T Consensus 381 a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 381 AVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 655555433 3334454
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-09 Score=100.63 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=93.2
Q ss_pred cchhHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHH-HHH---HhcChhHHHH
Q 011388 69 SSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IIS---FSKDSSFLFM 143 (487)
Q Consensus 69 ~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~ 143 (487)
.....|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||+++..+..+..+... ... ..+++..+.+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3344666554 4899999999999999999999999999999999999998876554433221 111 1234444445
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHH-HHHHHHHHHHHHhhhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~ 197 (487)
..++.|++.+...+....++.|.+|+++|++..++.. .+..++..++|.+.+.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 5666677777777777788999999999999999854 34444566677777655
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-09 Score=103.56 Aligned_cols=147 Identities=14% Similarity=-0.053 Sum_probs=104.2
Q ss_pred cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHH
Q 011388 313 AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVG 390 (487)
Q Consensus 313 ~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (487)
.+.+... .......++..++.++.|++.||+|+|+.+..+.++..++.++....... ..+..++.
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~ 137 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-------------GIALVVFC 137 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-------------CchHHHHH
Confidence 3454444 56667788999999999999999999999988887776665554432110 01122222
Q ss_pred HHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhh--hcchhhHHHHHHHHHHHHHHH
Q 011388 391 LVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW--SSGGTFLIYGIVCAFTVAFVS 468 (487)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 468 (487)
-++ .+.......|....+..|.+|+++|+++.|+.+....+|.+++|.+.+.+.+. ++...+.+.+++.++..++.+
T Consensus 138 r~~-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVI-QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHH-HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 222 33333444566678999999999999999999999999999999999999873 666677777776666655555
Q ss_pred Hhccc
Q 011388 469 LWVPE 473 (487)
Q Consensus 469 ~~~~~ 473 (487)
.+.++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 55443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-09 Score=95.28 Aligned_cols=125 Identities=15% Similarity=0.075 Sum_probs=101.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhH
Q 011388 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (487)
Q Consensus 80 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 159 (487)
+|.++++.++..+.+..+..++.+..+++.||+|+||++.++..+..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999988888888776666655433 346668999999999999
Q ss_pred HHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhh
Q 011388 160 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (487)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~ 207 (487)
.+...+..|++ .+.+.++. ....+|..+.|++.+.+ |.+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 99999988753 45666665 45668888999876665 6667766443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-09 Score=113.86 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=117.1
Q ss_pred HHHhhcCCChh-hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q 011388 75 EIISDLKLTIS-EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (487)
Q Consensus 75 ~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 153 (487)
.+.+++|.+.. +.|++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+.++.+.++++.++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45567899998 99999999999999999999999999999999999999999888888888899999999999999999
Q ss_pred hcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhH
Q 011388 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVL 208 (487)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~ 208 (487)
...+...+++.+..|+++||+++++.+....+|.++++.++..+ ++...|++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999988777776655 34445554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=100.61 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=102.4
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (487)
..+|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+..+..+.+++.+.+.+.++..... .-.+.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 456777778899999999999999999999999999999999 567777788888888877777766543332 457889
Q ss_pred HhhhhcchhHHHHHHhhCC-cCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777766554 46678889998888888888999888766
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-06 Score=80.43 Aligned_cols=126 Identities=7% Similarity=0.041 Sum_probs=96.6
Q ss_pred hHHHHHhhcCC-----ChhhHHHHHHHHHHHHHHH-HHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh----cC----
Q 011388 72 TQAEIISDLKL-----TISEFSIFGSLANVGAMVG-AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----KD---- 137 (487)
Q Consensus 72 ~~~~i~~~~~~-----s~~~~g~~~s~~~~~~~~~-~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~---- 137 (487)
++-.+.+.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++......+....+++++. ++
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 45557777655 3467999999988887777 9999999999999999999888888777777665 11
Q ss_pred -----------------------hhHHHHHHHHHHHhhhhcch-hHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHh
Q 011388 138 -----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (487)
Q Consensus 138 -----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 193 (487)
.|...+.-....+-...... .-..+..|.++.+|-.|..++...+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444444444454 678899999999999999999999999999999988
Q ss_pred hhhh
Q 011388 194 GLFV 197 (487)
Q Consensus 194 ~~~~ 197 (487)
..++
T Consensus 185 ~~~~ 188 (472)
T TIGR00769 185 IKYF 188 (472)
T ss_pred HHHH
Confidence 7665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=109.86 Aligned_cols=188 Identities=15% Similarity=0.066 Sum_probs=110.6
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhc-CCCchh---HHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 011388 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLL 349 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 349 (487)
.+++++.++++++..++..+........+..+..+...+. +.+... +......+..++..++.|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 4566677777666666555543332233333333222221 221112 444556677889999999999999999976
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHH
Q 011388 350 LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA 429 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 429 (487)
........+............ ..+..++. .++.+.......|...+++.+.+|++.++.++|+.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~------------s~~~l~~~-~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~ 152 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHLN------------SVPLLFAA-LFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAG 152 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------------hHHHHHHH-HHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHH
Confidence 442222222111111111111 11223333 33333344445677789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 430 NWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 430 ~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
..+|.++||.++|++.+...+..+++..++..+.+++..+.++++
T Consensus 153 ~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 153 TFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999884444444344444444444444555543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-08 Score=90.23 Aligned_cols=158 Identities=11% Similarity=0.080 Sum_probs=113.5
Q ss_pred hhhHHhhHHHHHHhcCCCchh---HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 299 INGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
-...++..|.+.++.|++..+ ........+..+..+.+|++.||+|.|+++..+.+...+..+++++..
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 446667778888888998776 566677888999999999999999999999998888888777777641
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcc--hhh
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSG--GTF 453 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~--~~~ 453 (487)
......+.-++++.+-+..+ ....++...+|+++|+++.|+.+....+|.++++++.+++...+.. ...
T Consensus 114 -------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~L 184 (511)
T TIGR00806 114 -------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTL 184 (511)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 22334444444555444443 5568899999999999999999999999999999999995543322 222
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 011388 454 LIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (487)
..+.......+++..+++|.
T Consensus 185 n~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 185 NIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 23333333344444455553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=97.75 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=98.3
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc--ChhHHHHHHHHHHHhhhh
Q 011388 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (487)
Q Consensus 77 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 154 (487)
++.+|.++...++......++..++.++.+++.||+|+|+++.++.++.+++.++..+.+ +.+.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 344676665555555555778888999999999999999999999999888888777754 567777788899999999
Q ss_pred cchhHHHHHHhhCCcC-------ccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 155 ISYTVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 155 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
..+...++..|..|.+ ++|...++.+....+|..+++.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988754 358889999999999999988776554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=95.06 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=117.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHH
Q 011388 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (487)
Q Consensus 81 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 160 (487)
+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.+++++++|.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcCccchhhHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHH-HhhhhccCCC
Q 011388 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIPES 223 (487)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~-~~~~~~~~e~ 223 (487)
.++++.+|+|-.++...+ .+.+.++|..+.+.+++.+ |.+..|++.+.+.+.. ++..+.++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998877777666 3677888888888777776 8887787766555544 4555556543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=90.04 Aligned_cols=158 Identities=16% Similarity=0.066 Sum_probs=113.0
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
......+.+-++.++++.+ +...+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.+.+.....+
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~------- 104 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS------- 104 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc-------
Confidence 3344445555777998887 6666778889999999999999999999999998888887777776533221
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh---cchhhH
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS---SGGTFL 454 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~---~~~~~~ 454 (487)
. +..++ +-+..+.+.+...+...++++.+|++++|.+.|+.. .+++|..+...+...+.. .+ .+....
T Consensus 105 ----~-~~ll~--~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 105 ----T-WQLLV--IGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred ----h-HHHHH--HHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 11111 222233334445566689999999999999999999 999999998888888877 34 455556
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 011388 455 IYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (487)
+.....++..+..++..++
T Consensus 177 i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 177 IYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 6666666666666666544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-08 Score=94.84 Aligned_cols=165 Identities=10% Similarity=0.030 Sum_probs=104.0
Q ss_pred hhhHHhhHHHHHHhcCCCchhHHHHH-HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011388 299 INGVLFYSSNIFANAGISSSNVATFG-LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDS 377 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (487)
.+....+.+.+.++.|++..+..... .+.......+..|++.||+|+|+++.++.+...++.++.++.......
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~----- 117 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIE----- 117 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence 45666788888888899877622221 122233456678999999999999999999999998887764211000
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHH
Q 011388 378 RFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYG 457 (487)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~ 457 (487)
...+...+...+.+.+.+ ...+.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+
T Consensus 118 ----~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 118 ----GSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred ----CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 011222222222222221 122333456677787 67999999999999999987555555555434445677777
Q ss_pred HHHHHHHHHHHHhcccC
Q 011388 458 IVCAFTVAFVSLWVPET 474 (487)
Q Consensus 458 ~~~~~~~~~~~~~~~~~ 474 (487)
++.++.+++...++++.
T Consensus 192 vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 192 SFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHhheeCC
Confidence 77777666666665443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-07 Score=81.95 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=91.8
Q ss_pred ccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHh-hhhhHHHHHHHHH
Q 011388 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNIIGWLIIS 133 (487)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----~~Grr~~~~~-~~~~~~~~~~~~~ 133 (487)
...|+..+... .+|.+.+.=|+|.++.+...-++. -...-+.+.++.| |+||||.-++ +..+.+..+.+.+
T Consensus 41 llQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs 117 (510)
T KOG3574|consen 41 LLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLS 117 (510)
T ss_pred HHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHh
Confidence 45577777777 899998888888877665433221 2234678899999 9999886555 6666666555555
Q ss_pred Hh-----------cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh
Q 011388 134 FS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 134 ~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
.. +|...+....++.-+..+.-..+.-.+.-.+..+++-|.+......+.+.|.+++..+-
T Consensus 118 ~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 118 YLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 43 23333444556666777777777777778888899999998888888888888776543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=92.77 Aligned_cols=148 Identities=24% Similarity=0.423 Sum_probs=123.3
Q ss_pred ccccccchhHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcC--hh
Q 011388 64 FTCGYSSPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SS 139 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~--~~ 139 (487)
++.....+..+.+..+++.+. .+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.+.+++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 455566677888888887776 58999999999999999999999999999999998888777777788888877 89
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhhCCc-CccchhhHHHHH-HHHHHHHHHHHhhhhh------hhHHHHHhhhHHHH
Q 011388 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPCT 211 (487)
Q Consensus 140 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~~------~wr~~f~~~~~~~~ 211 (487)
.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||+.|........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888888 5778888888666544 68886666555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=95.51 Aligned_cols=130 Identities=21% Similarity=0.253 Sum_probs=109.6
Q ss_pred cccchhHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc--ChhHHHH
Q 011388 67 GYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFM 143 (487)
Q Consensus 67 ~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 143 (487)
.......+.+.++ ++ +++..+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++
T Consensus 242 ~~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 320 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLI 320 (428)
T ss_pred hhhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444455555555 45 446788999999999999999999999999999999999999999999998886 9999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHhhCCc-------CccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 144 GRLLEGFGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 144 ~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
.-++.|++.+...+...++++|..+. ++.|...+..+...-+|..+++.+.+.+
T Consensus 321 ~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 321 LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999998873 3347788888888888888887766544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-06 Score=79.12 Aligned_cols=363 Identities=16% Similarity=0.053 Sum_probs=176.1
Q ss_pred ccccccchhHHHHHhhcC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH------h-
Q 011388 64 FTCGYSSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------S- 135 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------~- 135 (487)
.+..+.....|.+..+.. -+---.+...-.-.+...++++..|.+.||..|.+++..+.+..-++-.+.+. .
T Consensus 16 w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~ 95 (432)
T PF06963_consen 16 WGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSY 95 (432)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444455555555542 13223344444455667788889999999999999988877664333332221 1
Q ss_pred -c----ChhHHHHHHH---HHHHhhh-hcchhHHHHHHhhCC------cCccchhhHHHHHHHHHHHHHHHHhhhhh---
Q 011388 136 -K----DSSFLFMGRL---LEGFGVG-VISYTVPVYIAEIAP------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (487)
Q Consensus 136 -~----~~~~l~~~r~---l~G~~~~-~~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--- 197 (487)
+ +-+....+.. +.|.-.- .......+.=.||.. ++++.+..+...-.--+..+++|++.+.+
T Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~ 175 (432)
T PF06963_consen 96 PSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF 175 (432)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1122222221 1121111 111111222234432 33344455555555566777888887776
Q ss_pred -hhHHHHHhhhHHHHHHHhhh-hc----cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhh
Q 011388 198 -NWRVLAVLGVLPCTLLIPGL-FF----IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271 (487)
Q Consensus 198 -~wr~~f~~~~~~~~~~~~~~-~~----~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (487)
+.+....+.+...++.++.= ++ ....|. +..+++.++.....+.... ..............+.-+.....
T Consensus 176 ~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 251 (432)
T PF06963_consen 176 ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESS---SESSSDPSILKRLWNPLRTIIRG 251 (432)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccccc---ccccchhhHHHHHHHHHHHHhcc
Confidence 55555444444444433221 11 122332 2111111111000000000 00000000000111111222345
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 011388 272 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLL 349 (487)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 349 (487)
|+..++.+.+...+ ++.+.++.... .......|....|+++.. ..-....+.++.+.++..++.+|+|..+.-
T Consensus 252 w~~Y~~q~vflas~-alalLY~TVLs----f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G 326 (432)
T PF06963_consen 252 WRTYFRQPVFLASF-ALALLYFTVLS----FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG 326 (432)
T ss_pred HHHHHhCHHHHHHH-HHHHHHHHHhc----CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH
Confidence 55666655444333 22233332222 233445555666988776 566667788999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHH
Q 011388 350 LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLA 429 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 429 (487)
..+......+..+.......... +.........+.++.+.-.+. -++--...-++.|..|+++||...|+-+..
T Consensus 327 ~~~l~~q~~~L~~~v~~~~~~~~-----~~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl 400 (432)
T PF06963_consen 327 LWSLWWQWVCLALCVVSFWAPGS-----PFSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSL 400 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHH
Confidence 77766655444444433333221 000011112222222222211 112223346788999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 011388 430 NWLVSWIVTMTA 441 (487)
Q Consensus 430 ~~~g~~i~~~~~ 441 (487)
.++...+.-.+.
T Consensus 401 ~~lf~ll~~~~~ 412 (432)
T PF06963_consen 401 QSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHH
Confidence 988887665554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-08 Score=88.45 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhC
Q 011388 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (487)
Q Consensus 88 g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 167 (487)
+.+.-+-.+...+.-+.+-+..+|...+.=...+..++.++.++.++++|.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 34444555556666677778888888666666777788899999999999999999999999999998888887644 55
Q ss_pred CcCccchhhHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHhhhHHHHHHHh-hhhccCC
Q 011388 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (487)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~-~~~~~~e 222 (487)
++ ...+-+..+.+.++++|+..-..+ +-|..+.+...+.++..+ .++.+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 356777788888888777654333 346666665554444433 3444554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=89.49 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
.....+++...+.++..|.++||+|||.++..+.+..++...+.+... ....++..= +.++..
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~----------------~F~afv~aR-~l~Gi~ 134 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR----------------NFAAFVLAR-FLGGIF 134 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH-Hhhhhc
Confidence 556667899999999999999999999999999888888766666431 111222211 223333
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
-+...+..++++|++++++|+.+++.++....+|.++||.++|++..
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45556677999999999999999999999999999999999999877
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=91.54 Aligned_cols=135 Identities=13% Similarity=-0.040 Sum_probs=95.9
Q ss_pred chhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011388 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSE 375 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (487)
.......+.|.+.++.+.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.++........
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~----- 115 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM----- 115 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 3456677788887788887666 667777899999999999999999999999999988888876653211111
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 376 DSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
..+..+...++.+.+.+.. .+....++.|..|++++....++.+....+|..++|.+++.+.
T Consensus 116 -------~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 -------NYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -------CHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333334444444333 2333466677777776667899999999999999999887654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-09 Score=88.09 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=110.8
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHH-HHHHHHHhcChhHHHHHHHHHHHhhh
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII-GWLIISFSKDSSFLFMGRLLEGFGVG 153 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~ 153 (487)
..++.+|+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+..+ +-....+ +++.=+++..+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 57889999999999999998888999999999999999999887776555443 3333333 34444567788899887
Q ss_pred hcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-------hhH-HHHHhhhHHHHHHHhhhhcc
Q 011388 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWR-VLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-------~wr-~~f~~~~~~~~~~~~~~~~~ 220 (487)
.........++...|+++.|++.+..+...++|..+.|++++.+ .|- ..|.....+++....+++.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 77777788888899999999999999999999999999999887 244 33444444555554444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-09 Score=91.78 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccch
Q 011388 95 NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS 174 (487)
Q Consensus 95 ~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 174 (487)
.+.-..|.++.+.+.||+|||+.|..+++++++..++...+.+-....+.-+..-++.++.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34555788899999999999999999999999999998887665544444444445556667788999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh--hhHHHHHhhhHHHHHHHhhhhccCC
Q 011388 175 LGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPE 222 (487)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e 222 (487)
..|.-..+.-+|.++.|.++-.. +-..+..+.+...+++.+...++|-
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999433 2224444445555556666666663
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=89.93 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=109.6
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhh----hccchHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD----KAGRRLLLLIS-SSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 371 (487)
+.....+.+.++++.|.+... .......+.+++..++.|+++| |+|||+..+.. .....+++.++........
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 445566667778888887655 5666678889999999999999 59999988764 4444555555544321110
Q ss_pred ccCCC--ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhh--hhHhHHHHHHHHHHHHHHHHHhhhHh--
Q 011388 372 FVSED--SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIK--SLAGSVATLANWLVSWIVTMTANFLL-- 445 (487)
Q Consensus 372 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~i~~~~~g~~~-- 445 (487)
...++ ........+..++.+.+..........| ..+++.|..|+++| +.+.+..+....+|+.+++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00000 0000111122233333333333333333 45899999998865 57999999999999999999988652
Q ss_pred hh--------------hcchhhHHHHHHHHHHHHHHHHhcccCC
Q 011388 446 DW--------------SSGGTFLIYGIVCAFTVAFVSLWVPETK 475 (487)
Q Consensus 446 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
+. +....|.+.+++.++..++..+..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 11 2334566666666677677777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.4e-08 Score=94.77 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=102.4
Q ss_pred HhhHHHHHHhcCCCchh-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchh
Q 011388 303 LFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381 (487)
Q Consensus 303 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (487)
..-++.+..+.|-++.. +......++..++.++.|+++|.+|||..++.+.++..++.++.+.+.
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-------------- 129 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-------------- 129 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--------------
Confidence 34456677777776555 666667788899999999999999999999999999999888887541
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHH
Q 011388 382 ILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVC 460 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~ 460 (487)
.....+.+..+.+.+. +...+....++|..|.+.|..+.++.....-....++|.+...+.. .++.+.+++..+..
T Consensus 130 -~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 130 -NMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred -cHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 1122334444444432 3333445668999999999888777766555555567777665554 55666677666665
Q ss_pred HHHHHHHHHh
Q 011388 461 AFTVAFVSLW 470 (487)
Q Consensus 461 ~~~~~~~~~~ 470 (487)
.+..+...++
T Consensus 207 ~i~~vl~~~f 216 (599)
T PF06609_consen 207 GIALVLIFFF 216 (599)
T ss_pred HHHHHHHHHH
Confidence 5555444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=70.85 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=75.2
Q ss_pred ccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHH
Q 011388 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (487)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (487)
.|+.+..++|++|.+++|.++|.++.|++.+...+||.+|.+...++.++..+++.+..+++...+..+.+++.++.+..
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999988754
|
Note that many members are hypothetical proteins. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=90.73 Aligned_cols=143 Identities=14% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
..+...++.+++.+++.|.+.||+|+|..+.++..++....+++++... .+..+++-.+-+.+.+
T Consensus 110 ~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---------------y~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 110 LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---------------YPMLFVARSLQGVGSA 174 (464)
T ss_pred HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---------------hHHHHHHHHHhhhhHH
Confidence 6777778999999999999999999999999999999888888886421 1233444444444443
Q ss_pred cCcccchhhhhcccCChhh-hhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 400 LGVGAIPWVIMSEILPVNI-KSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
.. .....++.++.+|.+. |++++|+.-.+..+|-.+||+++|.++| .|.+.+|.+.+.++++-..+..+.++.++.+
T Consensus 175 ~~-~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 175 FA-DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HH-HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 33 3444589999999875 7999999999999999999999999999 8888999999999999888777776665544
Q ss_pred C
Q 011388 478 S 478 (487)
Q Consensus 478 ~ 478 (487)
+
T Consensus 254 ~ 254 (464)
T KOG3764|consen 254 P 254 (464)
T ss_pred c
Confidence 3
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-07 Score=89.93 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH--hcChhHHHHHHHHHHHhhhhcchhHHH
Q 011388 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPV 161 (487)
Q Consensus 84 ~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~ 161 (487)
++..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777888899999999999999999999888776654443333 346777888889999999999999999
Q ss_pred HHHhhCCc-------CccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 162 YIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 162 ~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
+++|..+. ++.|...+..+....+|..+|+.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998862 2235677888888888988888877655
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-07 Score=90.32 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=94.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH-----hcChhHHHHHHHHHH
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEG 149 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G 149 (487)
.+.++..-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|
T Consensus 256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 343433335566778888888999999999999999999999999888877766655433 345667777888899
Q ss_pred HhhhhcchhHHHHHHhhCCc-------CccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 150 FGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
++.+...+...+++.|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998662 2235578888888888888888776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=97.88 Aligned_cols=162 Identities=14% Similarity=0.011 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (487)
++...+..+...........-.+.+.++.++++.+ .......++..++.++.+++.||.+||+.+.++.++.+++.++
T Consensus 35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 34444344444433445555667777777877665 5666778899999999999999999999999999999999888
Q ss_pred HHHHHHhhcccCCC-------------------c--------------c-chh-HHHHHHHHHHHHHHHHHhcCcccchh
Q 011388 363 VSVAFFLEGFVSED-------------------S--------------R-FYS-ILGILSLVGLVTVVISFSLGVGAIPW 407 (487)
Q Consensus 363 ~~~~~~~~~~~~~~-------------------~--------------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (487)
+++..........+ . . ... ...+..++..-++.+.......++..
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 87764322111000 0 0 000 00122222222233333334456677
Q ss_pred hhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 408 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 408 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
+++.|.+|+++|+...|+.+....+|..+|+.+++.+.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-07 Score=79.90 Aligned_cols=168 Identities=15% Similarity=0.023 Sum_probs=110.0
Q ss_pred HHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011388 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
...+..+....|.|.+-+..++++.+ .......++..+ .++.|.+.|++|++.++.++.....++...+........
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33445677889999999999998888 333334555555 588899999999999999999999999988876543321
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHhcCc-ccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcc
Q 011388 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGV-GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSG 450 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~ 450 (487)
. ..+ .+...+.....+.+..+ .........+.+|. +||++.|+.-....+++++-..+...+.+.+..
T Consensus 92 ~---------~~~-~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 92 P---------SLP-VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred C---------ccc-hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 1 011 12222222233333222 22333445567885 799999999999999999999888887775444
Q ss_pred hhhHHHHHHHHHHHHHHHHhccc
Q 011388 451 GTFLIYGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
..+.+.+....+.+++...+++.
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheec
Confidence 44455555444444444444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=92.47 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=118.1
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh----------cChhHHHHHHHH
Q 011388 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLL 147 (487)
Q Consensus 78 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 147 (487)
+++|.++.+.|++.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999999888664311 444456667889
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h-----hHHHHH---hhhHHHHHHHh
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WRVLAV---LGVLPCTLLIP 215 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-----wr~~f~---~~~~~~~~~~~ 215 (487)
.+++.+........++.+.+|+++++...++.+...++|..+++.+++.+ | ++..+. +..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766 3 332222 23334444455
Q ss_pred hhhccCC
Q 011388 216 GLFFIPE 222 (487)
Q Consensus 216 ~~~~~~e 222 (487)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5567886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=77.56 Aligned_cols=363 Identities=14% Similarity=0.158 Sum_probs=206.7
Q ss_pred hcCCChhhHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcch
Q 011388 79 DLKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (487)
Q Consensus 79 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 157 (487)
+.|++..|+. -+.=...-.+.+.-.+.=.+.|..-.|+++++-.+.......+.-+.++.+.+-+.-++.|... ....
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHH
Confidence 4466666542 2222333444555566667899999999999987777778888889999999999999999876 4567
Q ss_pred hHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh------hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcC
Q 011388 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG 231 (487)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 231 (487)
+-++++.+.++|+++.++.+...++.-.|...|..++..+ +++..=.+......++....+++|..+|.+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 7889999999999999999999888888888888887766 3334334444445555667777887665433222
Q ss_pred ChHH-HHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHH
Q 011388 232 MTED-FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310 (487)
Q Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (487)
+.++ .....+.... ..+..+..+.....-..++.+..++|. ++-..+.+....++++-+..|...+.
T Consensus 194 ~~~~~~v~~~e~~~~--------~~~~~~~l~~~~~~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 194 LEDKISVGDLEEMNP--------QASYMSYLRGAFVLLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILW 261 (433)
T ss_pred ccccceeccchhcCc--------cchhhHHHHHHHHHHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHH
Confidence 2221 1000000000 000000000000111123333444443 33333344444556677777877777
Q ss_pred HhcCCCchh----HHHHHHHHHHHHHHhHHHHHhhhccchHHH--HHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHH
Q 011388 311 ANAGISSSN----VATFGLGVVQVVATGVNTWLMDKAGRRLLL--LISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILG 384 (487)
Q Consensus 311 ~~~g~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (487)
++..-.+.. ..=....+.+.++.+..|++.-++.|..-+ ..+.+..+...+.+.- . ...
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~---t------------~~I 326 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ---T------------QHI 326 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc---c------------cce
Confidence 765422222 333445667778888889887666665322 2332222222222221 1 122
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhh----Hhh-----hhcchhhHH
Q 011388 385 ILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANF----LLD-----WSSGGTFLI 455 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~----~~~-----~~~~~~~~~ 455 (487)
|.......++...+.... ++....+++....+.-|..+|+..++.-+-+.+-..+.-- -.| .-+..-|.+
T Consensus 327 w~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v 405 (433)
T KOG3810|consen 327 WVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIV 405 (433)
T ss_pred ehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHH
Confidence 344444555555554433 3333445555666778889998887776666555554311 111 112334666
Q ss_pred HHHHHHHHHHHHHHh
Q 011388 456 YGIVCAFTVAFVSLW 470 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (487)
++++.++...+.+..
T Consensus 406 ~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 406 LGVIFLIGFGIEYLM 420 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=76.25 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=164.7
Q ss_pred cchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHH
Q 011388 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (487)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (487)
.+|.+-.+-+.++....++|.+.-+.+-...+...+.|-++||-|||+.-+.-++...+++ +.-.++.|-.++++|.+-
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhh
Confidence 3465556777889999999999888888889999999999999999997665555444433 234578999999999999
Q ss_pred HHhhhhcchhHHHHH-HhhCCcCccchhhHHHHH--------HHHHHHHHHHHhhh----hh--hhHHHHHhhhHHHHHH
Q 011388 149 GFGVGVISYTVPVYI-AEIAPQNMRGSLGSVNQL--------SVTIGIMLAYLLGL----FV--NWRVLAVLGVLPCTLL 213 (487)
Q Consensus 149 G~~~~~~~~~~~~~i-~~~~~~~~r~~~~~~~~~--------~~~~g~~~~~~l~~----~~--~wr~~f~~~~~~~~~~ 213 (487)
|++.+..+.+.-++. .|.- ++|+.-.-+... +.++=.+++.+.+. ++ |--.+|-..+....+.
T Consensus 135 GiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 999998888776654 4443 334332222111 11222222223332 22 3335555544444433
Q ss_pred HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHH
Q 011388 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (487)
Q Consensus 214 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (487)
..+.+- .|-+.-++..|.+..+ +.-+...+.+..+++ ..+.-.+...
T Consensus 213 mAvil~-----~W~ENygdps~~kdll-------------------------tqf~gaa~aiaSD~k---i~LLG~iqsL 259 (454)
T KOG4332|consen 213 MAVILS-----SWSENYGDPSENKDLL-------------------------TQFKGAARAIASDEK---IALLGAIQSL 259 (454)
T ss_pred HHHHHh-----hhhhccCChhhhHHHH-------------------------HHhhHhHHHHhcchH---HHHHHHHHHH
Confidence 322221 1111111111100000 001111222222221 1222223333
Q ss_pred HHhhchhhHHhhHHHHHHhcCCCchhHHHHHHHHHHHHHHhHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHHHHhhc
Q 011388 294 QQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGMAASFFLVSVAFFLEG 371 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (487)
+....+..+..|.|.+-.+..--+....+.-+.+..++|+-+..++..|-..| ..+.+.+++..+.+.+........
T Consensus 260 FE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs- 338 (454)
T KOG4332|consen 260 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS- 338 (454)
T ss_pred HhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC-
Confidence 33334445555666543222111333556666677777877777776654433 344444444444443333322211
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH
Q 011388 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA 426 (487)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 426 (487)
|.. ..+...+++++++-...+.- .|...-+-.+..|.+.|++.+-.+
T Consensus 339 --P~k-----es~~~s~i~F~~~E~cvGlf-wPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 339 --PSK-----ESPSESLIGFCLFEACVGLF-WPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred --CCc-----CCchHHHHHHHHHHHHHhhc-chHHHHHHHhhCCHHHHhhhhhhe
Confidence 111 12223355555555555543 455557778889999887665544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=78.31 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=116.0
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHhhhhhHHHHHHHHHH---hcChhHHHHHHHHHHHhhh
Q 011388 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGVG 153 (487)
Q Consensus 78 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~ 153 (487)
+-||++..|..-++.....|..++....|++.. |.++|+...+++.+..++..+..+ ..+.+.+...-++.|++.|
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 448999999999999999999999999999887 678888888888887776665444 4678899999999999999
Q ss_pred hcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHhhhHHHHHHHhh
Q 011388 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~--------------~wr~~f~~~~~~~~~~~~~ 216 (487)
.......+...+...+++.|..+|.+.....++..++..+++.. +|-..|.+-++..++++.+
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888877655 4666666666555555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-07 Score=85.52 Aligned_cols=141 Identities=18% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
........+.+++.+.+|++.||+|-|+++..+.++.+++.++..+...... +..++.-++.+.+.+
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~-------------~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF-------------YLLLVLRFLQGLGQG 143 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhhHHHHHHhHHHHh
Confidence 6777788999999999999999999999999999999988888887644332 233444444444444
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
.. .|....+..+-.|+++|++..++.....++|.+++-++.|.+-+ .|+...|++.+++.++..++...+..+.
T Consensus 144 ~~-~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 144 VL-FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred HH-HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 43 35555888999999999999999999999999999999999988 5788889999999988888766665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-06 Score=75.71 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=124.9
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhh
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAV 123 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~ 123 (487)
++..|.+.+.+.+-++..+. .-.-+|.+..|-|+|..+.|++.+...+......+..-.+.+|. .+|+..+....
T Consensus 207 ~~~aW~vtLfmGlqS~~~Y~----~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 207 SPLAWQVTLFMGLQSLLYYI----VIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred CchhHHHHHHHHhhHHHHHH----HHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 34456666666665533222 22348899999999999999999999999999999999999965 57888888888
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCcc-chhhHHHHHHHHHHHHHHHHhhhhh-----
Q 011388 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~l~~~~----- 197 (487)
.+.++.+.+.+.+....++. -++.|+|.|+.++....++.+-.++.++ ++..++.+....+=..+||.+.+++
T Consensus 283 ~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 283 LMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 88888888888876554444 4999999999999999999987764443 4445555555555556788888888
Q ss_pred hhHHHHHhhhHHHHHHHh
Q 011388 198 NWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 198 ~wr~~f~~~~~~~~~~~~ 215 (487)
+|+...+..+...+...+
T Consensus 362 sw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 362 SWSAPLVLLALATLLMLI 379 (395)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 899887766655555433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=72.92 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=94.6
Q ss_pred HHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 011388 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 379 (487)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
.....|.+.+..+.+..+ ........+..+.++..+++.+|+|.|+-+..+..++++++.++.-.......
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y------- 104 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSY------- 104 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-------
Confidence 344556666656766555 66666678888999999999999999999999999999999888643322211
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 380 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
...+..++..+.+.+.- ......++..+.|++..+.-+.+.+.++.+|.+++|.+++.+..
T Consensus 105 -----~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 105 -----GFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred -----HHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 12222223333222221 23334788888888888889999999999999999999998876
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=86.01 Aligned_cols=136 Identities=16% Similarity=0.106 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
....+..++..+|.++.|.++||+|||+++..+.++..++.+..++.. .+..+..+=++.+.+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~----------------~~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP----------------NYWMFLIFRFLSGFFG 185 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHhhc
Confidence 667777899999999999999999999999999999888887766541 1233333334445555
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
.+...+...+..|..+++.|+.+..+ ......++.+++...+++.. ++.+.+++......+..++ +++.+|.
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 55566777999999999999999999 88888889999999888877 3334444444444444333 4444453
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-06 Score=83.61 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
+......++..++.++.|+++|++|||+.+..+.+...++.++.+.+. ......++-++.+.+.+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~---------------~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP---------------SWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHhccchh
Confidence 667777899999999999999999999999999999999999988763 23345555555555554
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-h--hcchhhHHHHHHHHHHHHHHHHhcccC
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-W--SSGGTFLIYGIVCAFTVAFVSLWVPET 474 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
... .+...+.+|..|++.||...+..+....+|..++ .+.+...+ . ++...+.+..+.+++..+. .++.||.
T Consensus 158 ~~~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 158 GAS-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhh-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 443 3344899999999999999999999999888777 55555444 2 3333444444444444444 5666654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-05 Score=76.42 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=78.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcC--hhHHHHHHHHHHHhhhhcchhHH
Q 011388 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SSFLFMGRLLEGFGVGVISYTVP 160 (487)
Q Consensus 83 s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~ 160 (487)
+++..+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++ ...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888999999999999999999999887655555444444434332 33445555677888877777777
Q ss_pred HHHHhhCCc-------CccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 161 VYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 161 ~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
+++.|..+. ++.|...+......-+|..+++.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877652 2224455666677777777776665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=81.43 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=97.1
Q ss_pred CCCchh--HHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHH
Q 011388 314 GISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVG 390 (487)
Q Consensus 314 g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (487)
|+++.. ..+..+....-+..+++||++|| +|+|+.+..+.++++++.++++.... .......+.
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~-------------~~~~gl~i~ 123 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-------------SGPGGLYIG 123 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-------------ccccHHHHH
Confidence 376665 33334444455678899999999 59999999999999999999986420 011233344
Q ss_pred HHHHHHHHhcCcccchhhhhcccCChh--hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHH
Q 011388 391 LVTVVISFSLGVGAIPWVIMSEILPVN--IKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 467 (487)
+.++..+. ...-+...++..|++|++ .|..++++..+..++|+.++|.+.+++.+ .+++..|...++-..++.+..
T Consensus 124 L~~I~iG~-Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 124 LALIIVGT-GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHhcc-ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 43333222 233355558899998865 47788888899999999999999999999 555555555555555554444
Q ss_pred HH
Q 011388 468 SL 469 (487)
Q Consensus 468 ~~ 469 (487)
++
T Consensus 203 ~~ 204 (498)
T COG3104 203 LL 204 (498)
T ss_pred HH
Confidence 33
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=86.49 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=121.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q 011388 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (487)
Q Consensus 73 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (487)
+---.+|++-.+.-.|.....-..+-++.-++.+++..|+|+-+++.+++....+=.+..++.+|.|..+...+++|+..
T Consensus 394 LfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ 473 (618)
T KOG3762|consen 394 LFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH 473 (618)
T ss_pred HHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH
Confidence 33456777777777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHhhCCcCccchhhHHHHHH-HHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 153 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
+..+.+..+|+++..||+-|..+.++.+.. .++|--+|.++|+.+ +=|..|...++.+++.++...
T Consensus 474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543 344555555555544 777888777776666544433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-06 Score=66.38 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=99.2
Q ss_pred chhHHHHHhhc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHH
Q 011388 70 SPTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (487)
Q Consensus 70 ~~~~~~i~~~~--~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (487)
.+++..+.++- ++++..--.-.++......++.++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+
T Consensus 20 ~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l 98 (156)
T PF05978_consen 20 ESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASAL 98 (156)
T ss_pred HHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 34445555442 3344333445666667778888888999999999999999999888654443 56788999999999
Q ss_pred HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh
Q 011388 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (487)
Q Consensus 148 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 196 (487)
.|++.+..+++...++.+..++++|++..++.-.....+.++|.++...
T Consensus 99 ~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 99 LGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-05 Score=73.38 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=95.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc--ChhHHHHHHHHHHHhhhhcch
Q 011388 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISY 157 (487)
Q Consensus 80 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 157 (487)
+|.+..+..+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +...+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455666677888888888888899999999999999999999999999999998876 778888999999999999999
Q ss_pred hHHHHHHhhCCcC-------ccchhhHHHHHHHHHHHHHHHHhhhh
Q 011388 158 TVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLF 196 (487)
Q Consensus 158 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~ 196 (487)
...++++|..+-+ +-|...+......=+|..++..+.++
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876522 22556666666666676666655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0015 Score=63.15 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh---------cC---------------
Q 011388 83 TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD--------------- 137 (487)
Q Consensus 83 s~~~~g~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 137 (487)
+++.+.++=....+ ...+......+++++++|.+++-+....+.....+.++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56667777665555 445668889999999999999988887777766666653 11
Q ss_pred -------hhHHHHHHHHHHHhhhhcch-hHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 138 -------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 138 -------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
.|.+.+.-.+.-+-...... .-..+..|.++.+|-.|..++.+.+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222223333 4577889999999999999999999999999988776555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-05 Score=73.51 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=119.2
Q ss_pred cccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHHHHHHHHHHhcC--------
Q 011388 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKD-------- 137 (487)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~-------- 137 (487)
+.....+..+.+++|.+...+.-..+.+.-...+..+.+++++|-| ||-+.+.++.++..+|..+..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 4456778889999999988899999999999999999999999975 8999999998888888665544311
Q ss_pred -----------------hhHHHHHHHHHHHhhhhcchhHHHHHHhhCC---cCc---cchhhHHHHHHHHHHHHHHHHhh
Q 011388 138 -----------------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP---QNM---RGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 138 -----------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
...++.+.-+..+|.|+.-|...++-+|-++ +++ +...+.++....++|..++..+-
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 1266677788888999999999999999998 322 23677888888899988887666
Q ss_pred hhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 195 LFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 195 ~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
.+. +|.+-|.+.....++++++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 555 899998887776666544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.7e-06 Score=78.87 Aligned_cols=141 Identities=15% Similarity=0.033 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
.....+.++.+++.+.++.+.||++-.+.+....+...+..++-.. .. ....++++-++.+.+.
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~~-------------s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VH-------------SFPGLIALRFLLGLFE 148 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---Hh-------------hhHHHHHHHHHHHHHh
Confidence 6677788999999999999999999554443333222221111111 11 1223334334444445
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-------hhcchhhHHHHHHHHHHHHHHHHhcc
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-------WSSGGTFLIYGIVCAFTVAFVSLWVP 472 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
.+..|....++..-+.+++|+.-+|+.+....+|+++|+.+...+.+ .++.+.|.+-+++.++.++++++++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 55567666899999999999999999999999999999999988642 56778899999999998888888877
Q ss_pred cCCC
Q 011388 473 ETKG 476 (487)
Q Consensus 473 ~~~~ 476 (487)
+...
T Consensus 229 ~~P~ 232 (495)
T KOG2533|consen 229 DNPS 232 (495)
T ss_pred CChh
Confidence 6443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=74.59 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=102.1
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCccc
Q 011388 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 404 (487)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (487)
.++..++.++..|.++||+|||..+......+.+..+.+.+. .++.++ ..-..++++ ....
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-----------------~~~~~~-~~~l~g~~~-~~~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-----------------GYWFFL-LLGLSGGFS-AIFS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-----------------HHHHhh-hcccccchh-hhhh
Confidence 367788889999999999999999888877777666666542 122222 222222232 2234
Q ss_pred chhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 011388 405 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 478 (487)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
...+++++....+.|....|+.+.....+..++|.+.+.+.+ .+....+.+..+..++..+.....+||+..++
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 445899999999999999999999999999999999999998 66677788888888888888888888876544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.8e-09 Score=100.54 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=98.7
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHH--H--h-cC-----hhH
Q 011388 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--S-KD-----SSF 140 (487)
Q Consensus 71 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~--~-~~-----~~~ 140 (487)
...+.+.++.+.+.. -+......+...++.+....+.||+|||+.++.+..+.+++.+..+ . . ++ ...
T Consensus 274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345667777777766 2222333344556666777999999999999999999888877775 1 1 11 222
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHhhhHHHHHHHh
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-wr~~f~~~~~~~~~~~~ 215 (487)
+............+..+....+..|.+|.+.|++..++......++..+++.+...+ + +.......++..+..++
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 222222111222244566668889999999999999999988888888887766554 3 33333444444444556
Q ss_pred hhhccCCCh
Q 011388 216 GLFFIPESP 224 (487)
Q Consensus 216 ~~~~~~e~p 224 (487)
..+++||+.
T Consensus 432 ~~~~lpET~ 440 (451)
T PF00083_consen 432 VYFFLPETK 440 (451)
T ss_pred eeEEEeeCC
Confidence 677899983
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=67.90 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=81.9
Q ss_pred HhhhcccccccccccchhHHHHHhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHh-hhhhHH
Q 011388 55 VALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNI 126 (487)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----~~Grr~~~~~-~~~~~~ 126 (487)
+.+.+++.|+-.+.....+|.+.++ -++|.+|.|...-+ ...+. .-+++.++.| |+||||.-++ .-.+.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 3445567778877776678888887 68888887653211 11111 3456666766 8999887665 444444
Q ss_pred HHHHHHHHhcC-------------------h-----hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHH
Q 011388 127 IGWLIISFSKD-------------------S-----SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182 (487)
Q Consensus 127 ~~~~~~~~~~~-------------------~-----~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 182 (487)
+..+..+...+ . ..+....++.=+-.+---.+.-.+.-....+++++.+......+
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG 162 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG 162 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence 44444433220 0 11222222333333333344455555667888999998888888
Q ss_pred HHHHHHHHHHhh
Q 011388 183 VTIGIMLAYLLG 194 (487)
Q Consensus 183 ~~~g~~~~~~l~ 194 (487)
.+.|..++..+-
T Consensus 163 ~~~Gyfls~tvF 174 (544)
T PF13000_consen 163 QTAGYFLSFTVF 174 (544)
T ss_pred hhhhHHHHHHHH
Confidence 888888876554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=59.24 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=53.1
Q ss_pred ccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh
Q 011388 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (487)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 124 (487)
...+...|.+|...++.|+|+.|+|.+.++..+...++++++|.++||+++++.++....+
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3345667888888889999999999999999999999999999999999998887776544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0051 Score=58.01 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=91.2
Q ss_pred hHHHHHhhcC---CChhhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHh---------cC-
Q 011388 72 TQAEIISDLK---LTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD- 137 (487)
Q Consensus 72 ~~~~i~~~~~---~s~~~~g~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---------~~- 137 (487)
.+-.+.+.+. .+++.+.++-+..-+ +..+..++.+++.+++.+.+++-.-+..+....+++++. ++
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 3445666664 356678888888888 788899999999999999999999888888888888763 11
Q ss_pred ----------------------hhHHHHHHHHHHHhhhhcch-hHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhh
Q 011388 138 ----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (487)
Q Consensus 138 ----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 194 (487)
.|...+...+.-+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 4456678888889999999999999999999998887
Q ss_pred hhh
Q 011388 195 LFV 197 (487)
Q Consensus 195 ~~~ 197 (487)
.++
T Consensus 205 ~~~ 207 (509)
T COG3202 205 SWL 207 (509)
T ss_pred HHH
Confidence 776
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=74.03 Aligned_cols=144 Identities=10% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHH
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISF 398 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (487)
+......++..+++++.|+...|.++ |+.++.+.++++++.++........+. ..+..+++-+ ..++
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~----------~~y~mL~~R~--l~Gv 142 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG----------VKYLMLVARI--LTGV 142 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc----------hHHHHHHHHH--HcCc
Confidence 66777889999999999999999886 888899999999999888544333221 1233333333 3333
Q ss_pred hcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--------------hhcchhhHHHHHHHHHHH
Q 011388 399 SLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--------------WSSGGTFLIYGIVCAFTV 464 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--------------~~~~~~~~~~~~~~~~~~ 464 (487)
+.+.....-.|.++..-.+.|.++++..+....+|.++||.+...+.. +-+..+.++.+.+.++..
T Consensus 143 g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 143 GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 444445667888887777788889988888888888888877654432 113445677777777777
Q ss_pred HHHHHhcccCC
Q 011388 465 AFVSLWVPETK 475 (487)
Q Consensus 465 ~~~~~~~~~~~ 475 (487)
++..++.+|.+
T Consensus 223 v~i~~~f~E~~ 233 (488)
T KOG2325|consen 223 VIILFFFKEVY 233 (488)
T ss_pred HHHHhheeecc
Confidence 77777776643
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0003 Score=66.60 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=84.0
Q ss_pred HHHHhhhhhHHHHHHHHHHh--c-Ch------hHHHHHHHHHHHhhhhcchhHHHHHHhhCCcC---ccchhhHHHHHHH
Q 011388 116 GSLMIAAVPNIIGWLIISFS--K-DS------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 183 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~-~~------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 183 (487)
|.+.++.++..+|.++..++ + +. ..++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888899998885443 2 22 57899999999999999999999999999876 3566788899999
Q ss_pred HHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhc
Q 011388 184 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (487)
Q Consensus 184 ~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~ 219 (487)
++|..++..+..++ +|.+.|.+.++..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999888877 7999999988877777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-06 Score=79.37 Aligned_cols=173 Identities=18% Similarity=0.095 Sum_probs=123.9
Q ss_pred HHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHH--------HHHH-HHHHHHHHHHHHHHHHhhhchhHHHHh
Q 011388 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSI--------FGSL-ANVGAMVGAIASGQIAEYIGRKGSLMI 120 (487)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~--------~~s~-~~~~~~~~~~~~g~l~d~~Grr~~~~~ 120 (487)
..++..+..+|+.-+.....+.....+.+++++.+.+... ...+ ...++..+-.+...+.|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4556667777776666666666777888888776554333 1111 122233355566778999999999999
Q ss_pred hhhhHHHHHHHHHHhcC-h---h----HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHH
Q 011388 121 AAVPNIIGWLIISFSKD-S---S----FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (487)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~---~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (487)
+.+++++..+..+...| . . ...+..++.-+|- ......+-+|.+|.+-|+...|+..+..-.|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988876 1 1 2233334444433 2334456689999999999999999999999988876
Q ss_pred hhhhh---------hhHHHHHhhhHHHHHHHhhhhccCCChH
Q 011388 193 LGLFV---------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (487)
Q Consensus 193 l~~~~---------~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (487)
.-... +-|+.+++.+...++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 55443 6889999999888888888889998853
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00038 Score=63.02 Aligned_cols=157 Identities=20% Similarity=0.112 Sum_probs=88.2
Q ss_pred hhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchh
Q 011388 304 FYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYS 381 (487)
Q Consensus 304 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (487)
.|.-.++++.|++..+ ..+........+...+.|.+.||+|||+..+...++..++++.....
T Consensus 55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~--------------- 119 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS--------------- 119 (354)
T ss_pred chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc---------------
Confidence 3444455677887766 44444456677888899999999999999877777776666543321
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhhhc----ccCChhhhhhHhHHHH-HHHHHHHHHHHHHhhhHhh-h--hcchhh
Q 011388 382 ILGILSLVGLVTVVISFSLGVGAIPWVIMS----EILPVNIKSLAGSVAT-LANWLVSWIVTMTANFLLD-W--SSGGTF 453 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~~~~-~--~~~~~~ 453 (487)
.....++.-++.+..-+.-....-.-++. +-+|++..+...+... ..+.+-.+++..++.++.+ . +...+|
T Consensus 120 -~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF 198 (354)
T PF05631_consen 120 -NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF 198 (354)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence 11222222222222222111111111223 3456666666666665 3344556666666666666 2 335566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC
Q 011388 454 LIYGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
.....+..++.+++...-+|..+
T Consensus 199 ~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHHHHhcccccCC
Confidence 66666666666655555556544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00056 Score=65.53 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhh----------hhhH--HHHH
Q 011388 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------VNWR--VLAV 204 (487)
Q Consensus 137 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----------~~wr--~~f~ 204 (487)
.++..++.-++.|++.+........+.+. +|++ .+..+..+.+++++++..+.-. ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 35566677788899998888888877764 5543 3445555555555554433211 1122 3445
Q ss_pred hhhHHHHHHHhhhhccCCChH
Q 011388 205 LGVLPCTLLIPGLFFIPESPR 225 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~ 225 (487)
+..+..+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 555666666666666777763
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0012 Score=60.96 Aligned_cols=172 Identities=9% Similarity=0.014 Sum_probs=84.4
Q ss_pred cchhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhh
Q 011388 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTIS---EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (487)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~---~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~ 121 (487)
....+.+.++..++.. ...+......+...+++.-+.. -....+....+...+....-.++.-|.. +++....
T Consensus 16 ~~~v~~i~~llGiG~L---lpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~-~~~~~~l 91 (406)
T KOG1479|consen 16 YNLVYLIFLLLGIGTL---LPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLR-TRVGYLL 91 (406)
T ss_pred cccHHHHHHHHhcccc---cchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444555555565543 4445555666777776643333 1233333334444444444455555522 2222221
Q ss_pred hhhHHHHHHHHHHh---------cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHH
Q 011388 122 AVPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (487)
Q Consensus 122 ~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (487)
.....+....+.++ ..+...++.-.+.|++.|..........++. |++.-. -...+.++++++...
T Consensus 92 ~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl 166 (406)
T KOG1479|consen 92 SLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSL 166 (406)
T ss_pred HHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHH
Confidence 12222222222222 2345666677788888888777777766664 444322 222333333333322
Q ss_pred hh---hhh------hhHHHHHhhhHHHHHHHhhhhccCCChH
Q 011388 193 LG---LFV------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (487)
Q Consensus 193 l~---~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (487)
+. ... +=-..|.+..+..+++++....+|..|-
T Consensus 167 ~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 167 LRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 21 111 2225566666777777777777777663
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=68.51 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=95.9
Q ss_pred HHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhh--H---
Q 011388 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP--N--- 125 (487)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~--~--- 125 (487)
.++-+.+.++..+.....+.+.+. ...++.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+- .
T Consensus 248 ymiPL~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~ 322 (402)
T PF02487_consen 248 YMIPLFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVF 322 (402)
T ss_pred HHHHHHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHH
Confidence 344444555555544433333211 112334346778889999998877775543221 33 3333333222 2
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
.+.....-+.++.|..++.-+..|+..|..++.....+.|-.++++|...++....+.++|..++..++-.+
T Consensus 323 ~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 323 LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222223335688999999999999999999999999999999999999999999999999999998888654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0025 Score=64.30 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=90.5
Q ss_pred HhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHH
Q 011388 311 ANAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 387 (487)
Q Consensus 311 ~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
+..++++.. ..........-+..+++|+++|+ +|+++.+..+.++..++..++.+...... .. .......
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-----~~--~~~~~~~ 88 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-----GH--PLHDLLD 88 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-----cc--chHHHHH
Confidence 345766555 33333444455677788999997 69999999999888888877765321100 00 0111222
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCChh---hhhhHhHHHHHHHHHHHHHHHHHhhhHhh-h-------hcchhhHHH
Q 011388 388 LVGLVTVVISFSLGVGAIPWVIMSEILPVN---IKSLAGSVATLANWLVSWIVTMTANFLLD-W-------SSGGTFLIY 456 (487)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~-------~~~~~~~~~ 456 (487)
++++.+..++. .+.-|...+...|.++++ .+...+.++....++|+.+++.+.+++.+ . ++...+.+.
T Consensus 89 l~gLaLia~G~-GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 89 LLGLALIALGT-GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHhhc-cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 33333333333 233344457777777643 46778888899999999999999998874 2 233445555
Q ss_pred HHHHHHHHHHH
Q 011388 457 GIVCAFTVAFV 467 (487)
Q Consensus 457 ~~~~~~~~~~~ 467 (487)
+++.+++.++.
T Consensus 168 ~i~m~ia~lvf 178 (654)
T TIGR00926 168 AILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=56.17 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred cCccchhhHHHHHHHHHHHHHHH--Hhhh-----hh--hhHHHHHhhhHHHHHHHhhhhcc
Q 011388 169 QNMRGSLGSVNQLSVTIGIMLAY--LLGL-----FV--NWRVLAVLGVLPCTLLIPGLFFI 220 (487)
Q Consensus 169 ~~~r~~~~~~~~~~~~~g~~~~~--~l~~-----~~--~wr~~f~~~~~~~~~~~~~~~~~ 220 (487)
+|+|+....+...+.++|.++.. .+-. .. +|++.+.+.+++.++.+++...+
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999988753 3322 11 79999988887766655554443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00078 Score=46.77 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=48.8
Q ss_pred HhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 011388 295 QLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 355 (487)
.++....+.-|.+.++++.|++..+ ....+..+..+++.++.|.++||.++++........
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3344566777889999999998777 667777899999999999999999998887655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0048 Score=59.52 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=88.0
Q ss_pred HHHHHhcCCCchhHHHHHHHHHH--HHHHhHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 011388 307 SNIFANAGISSSNVATFGLGVVQ--VVATGVNTWLMDKAG-----RRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRF 379 (487)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (487)
+.+.++.|.++.+... ...+.. -...++.|.++|-+. ||..+.++.++..++...++.......
T Consensus 14 ~~l~~~l~ls~~~~~~-~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~-------- 84 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQR-LSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES-------- 84 (433)
T ss_pred HHHHHHcCCCHHHHHH-HHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc--------
Confidence 3444556887766222 222233 355778999999873 445555566555444444443211110
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccC---ChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 380 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEIL---PVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
......+.+++...+.... -....++..|.. |.+ ++...+.....+.+|++++..+.|.+.+ .++...+.+
T Consensus 85 ---s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 85 ---SAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ---hhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 1111222222222222221 123345666654 333 7788888899999999999999999988 666666777
Q ss_pred HHHHHHHHHHHHHHhccc
Q 011388 456 YGIVCAFTVAFVSLWVPE 473 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (487)
.+.+..+..+...+..+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 777766666655565555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0066 Score=56.63 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=91.9
Q ss_pred ccchhHHHHHHHHHHHH---hhchhhHHhhHHHHHHhcCCCchh-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 011388 279 RYWFPLMIGIGLLVLQQ---LSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 354 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 354 (487)
+++|..++.+.+..+.+ +..+..+..+...++ |.++.. +...++.+..++..+.+-|+.||+|-|..+.++..
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y---gs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFY---GSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHh---cchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 44455555544444433 222344455555554 422222 77778888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccchhHHHH--HHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHH
Q 011388 355 GMAASFFLVSVAFFLEGFVSEDSRFYSILGI--LSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWL 432 (487)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 432 (487)
..+++..+=.+..... .+ ...+ ....+-.+....... ...+..-...--+|+++|+++..+..+.+.+
T Consensus 118 ln~iGa~Ir~iss~p~--v~-------~~f~~~l~~~Gq~iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~n~L 187 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPF--VP-------PLFRRPLTHTGQSIAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMGNPL 187 (480)
T ss_pred HHHHHHHHhhhccCcc--cc-------ccchhhhhHHhHHHHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhcchH
Confidence 8888877665542210 00 0111 111111111111111 0111112334468999999999999999888
Q ss_pred HHHHHHHHhhhHhh
Q 011388 433 VSWIVTMTANFLLD 446 (487)
Q Consensus 433 g~~i~~~~~g~~~~ 446 (487)
|.+++-.+...+..
T Consensus 188 Gvavg~llppilV~ 201 (480)
T KOG2563|consen 188 GVAVGFLLPPILVP 201 (480)
T ss_pred HHHHHhhccceecC
Confidence 88888877776655
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.004 Score=59.17 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=98.8
Q ss_pred chhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH---hc-------Chh
Q 011388 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-------DSS 139 (487)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~-------~~~ 139 (487)
......+...-|+++..+|..-+...+....+.....++.+|+|..|.=.+++....+...++.. .+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 34444555555999999999999999999999999999999999988888877765544444432 12 234
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 140 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
.++.+-.+.=+|.=++..+..-++.|..|+++||...|......++--++...++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555556666677778888899999999999999999999888888777776666544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.036 Score=44.56 Aligned_cols=109 Identities=8% Similarity=-0.101 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
....+......++.++.+.+.+++|.|+.+.++.+...+-...... ...+..+....+.+.+.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhhhhH
Confidence 5555666777788888999999999999998887776644443321 122344444445555555
Q ss_pred cCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 400 LGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
..+.+.. .++.+...++.+++-.++.-.+...+.++|..+.-.+.
T Consensus 105 ~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 105 LLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 67778888888999999988888888877777664443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.028 Score=55.40 Aligned_cols=133 Identities=20% Similarity=0.105 Sum_probs=78.2
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh-hhhhHH-HHHHHH----HHhcCh-hHHHHHHHHH
Q 011388 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNI-IGWLII----SFSKDS-SFLFMGRLLE 148 (487)
Q Consensus 76 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~ 148 (487)
+.--+|-+..+.+.+.+++.+|.++|+.+++++.++--++....- +..+.+ ++..+. ++.... ..++..-++.
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444568888899999999999999999999988744333322211 111111 111111 111111 2233445667
Q ss_pred HHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh-----h-hHHHHHhhhHH
Q 011388 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N-WRVLAVLGVLP 209 (487)
Q Consensus 149 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~-wr~~f~~~~~~ 209 (487)
|+..|+..|....+..+... ++-++..|-......+|.++|.++.+++ | .+..+.++.+-
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~ 186 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN 186 (521)
T ss_pred HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888888887776665432 2345566777777777777777776655 3 34544444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.08 Score=50.60 Aligned_cols=107 Identities=21% Similarity=0.348 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhchhHHHHhhhhhHHHHHHHHHHh------------------cChhHHHHHHH
Q 011388 88 SIFGSLANVGAMVGAIASGQIA---EYIGRKGSLMIAAVPNIIGWLIISFS------------------KDSSFLFMGRL 146 (487)
Q Consensus 88 g~~~s~~~~~~~~~~~~~g~l~---d~~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 146 (487)
+.-.-...+|..+++.+.+.++ +++||++.+.++.++..++.++.-.. +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 3333334444555555666666 46789999999998888887777553 24567788889
Q ss_pred HHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh
Q 011388 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (487)
Q Consensus 147 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 195 (487)
+.|++.+......+.++.+.+ +++|..+.++.-.-..++..++.....
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999 577888888877777777666544443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=50.78 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=35.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhhHHHHHHHHHHHHHH
Q 011388 419 KSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 419 ~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 467 (487)
.+...|-......+|+++|.++.+++.- .+......+.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999998766 555555666666555555433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.19 Score=48.66 Aligned_cols=116 Identities=12% Similarity=0.045 Sum_probs=73.5
Q ss_pred HHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCccc---------hhHH----HHHHHHHHHHH
Q 011388 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGF--VSEDSRF---------YSIL----GILSLVGLVTV 394 (487)
Q Consensus 330 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~~~----~~~~~~~~~~~ 394 (487)
++..++.+++++|++|+++...........+.++++....... +++...+ .... ..+......+.
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 3347788999999999998877766666666665554332111 0100000 0000 01111222222
Q ss_pred HHHHhcCccc-chhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 395 VISFSLGVGA-IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 395 ~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
.-.++....+ +.|.+++|....++..+-.++....+++|..+++.+..++.
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 66899999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00053 Score=62.83 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHh
Q 011388 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (487)
.....+.++..+|+.+.++..-+..+++.+....+.=.+..-++..+...+.. .. .+..-...+..++. .+..+++
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~-~~-~~~~~~~d~~~~i~--~~l~g~T 261 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRP-RY-LPVLFNSDAWFIIL--MLLFGFT 261 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhccc-cc-CCCcccchHHHHHH--HHHHHHc
Confidence 34566788999999988875322113333333222222222222222111000 00 00000111222222 2233334
Q ss_pred cCc-ccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 400 LGV-GAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 400 ~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
.|+ ......+..+..++++|..+..++.+.-.+|-.+|..+.
T Consensus 262 NGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 262 NGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -----HHHH----------------------------------
T ss_pred cchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 345567788888888888888888888777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.005 Score=57.43 Aligned_cols=157 Identities=14% Similarity=0.106 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhh----ccchHHHHH-HHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDK----AGRRLLLLI-SSSGMA 357 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~-~~~~~~ 357 (487)
+....+....+++ ...-..|.+.+.+..|.+... .......+.+.+.+++.|..+|| +||||..+. +.....
T Consensus 35 i~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 35 ISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 3333334444433 345566778888888886554 44455567788889999999997 577776554 455556
Q ss_pred HHHHHHHHHHHhhcccCCCccc--hhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhh-HhHHHHHHHHHHH
Q 011388 358 ASFFLVSVAFFLEGFVSEDSRF--YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSL-AGSVATLANWLVS 434 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~ 434 (487)
++++++...........++... ........++.+.+.-........| .-++..|+..++.+.+ +++....+..+|+
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAVGN 192 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence 6777776665554444333322 2223333444444444444333334 4588888888777777 9999999999999
Q ss_pred HHHHHHhhh
Q 011388 435 WIVTMTANF 443 (487)
Q Consensus 435 ~i~~~~~g~ 443 (487)
.+|-.+.++
T Consensus 193 vLGY~~g~y 201 (498)
T KOG0637|consen 193 VLGYALGSY 201 (498)
T ss_pred eeeeecccc
Confidence 888777763
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.47 Score=44.75 Aligned_cols=129 Identities=7% Similarity=0.015 Sum_probs=81.0
Q ss_pred hHHhhHHHHHHh-cCCCchhHHHHH---HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 301 GVLFYSSNIFAN-AGISSSNVATFG---LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 301 ~~~~~~~~~~~~-~g~~~~~~~~~~---~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
.-++..|++.+. .|++..+...-+ ..-..++.-+....+.|.++.|.+++.+.+...+...++.+.
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 344555555544 677766622211 123445566677889999999999988887776666665543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
......-+.-++++...+. -...++++-...|+++--++.+......-+|..++..++..+..
T Consensus 92 -----~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 92 -----TSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred -----CcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222221 23345677777888888889998888888888888888887777
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.067 Score=53.83 Aligned_cols=164 Identities=12% Similarity=-0.011 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 011388 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (487)
.++.+..+..+.+......+..-...+-+..++++.. ......-++..+......+...|..|-+.+-.+.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 3444555555555444444444555555566776555 44445567778888888888889888888889999999998
Q ss_pred HHHHHHHHhhcccCCCc--------------------------------c----chhHHHHHHHHHHHHHHHHHhcCccc
Q 011388 361 FLVSVAFFLEGFVSEDS--------------------------------R----FYSILGILSLVGLVTVVISFSLGVGA 404 (487)
Q Consensus 361 ~~~~~~~~~~~~~~~~~--------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (487)
++..+.-+..+...++. . ......+..++..-++.+.......+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 88877643321111000 0 11111333333333333334444556
Q ss_pred chhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 405 IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
+..+|+-|...+++.....|+..++..+|-++|-.+++....
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 778999999999999999999999999999988888887754
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0016 Score=64.35 Aligned_cols=154 Identities=15% Similarity=0.050 Sum_probs=1.0
Q ss_pred HHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011388 292 VLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 369 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (487)
.+.+.........-++.+.+..++++.+ ......-++.++..++..+..+|..|-+.+-.+.++++++.+++++..+.
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 3333333334444556666677887666 66666778888999989999999888888889999999999988876554
Q ss_pred hcccCCCccc-------------------------------hhHHHHHHHHHHHHHHHHHhcC---cccchhhhhcccCC
Q 011388 370 EGFVSEDSRF-------------------------------YSILGILSLVGLVTVVISFSLG---VGAIPWVIMSEILP 415 (487)
Q Consensus 370 ~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p 415 (487)
......+... ...........+++.....+.| ..++..+|+-|.++
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 4322111000 0001111122222222223333 34566799999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 416 VNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 416 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
++..+...|+......+|-++|-.+++...
T Consensus 172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 172 KKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------------
T ss_pred cccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999998888888877654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.6 Score=39.39 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhC
Q 011388 95 NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (487)
Q Consensus 95 ~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 167 (487)
.+..+.+.++.+.+.+++|-|..+.++.......- ..-+-+.+..++..-...|++.+..+..--+++++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 33444556666689999999999998877665422 2223467789999999999999999888777776654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.57 Score=42.49 Aligned_cols=131 Identities=20% Similarity=0.097 Sum_probs=77.3
Q ss_pred HhhHHHHHHhcCCCc----hhHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011388 303 LFYSSNIFANAGISS----SNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSR 378 (487)
Q Consensus 303 ~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (487)
....+.+..+.+.+. .........+...++.++.|.+.||.|||+.+..+......+.....+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---------- 91 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----------
Confidence 334455555544443 235666667777778899999999999997766666543333222222110
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCCh-hhhhhHhHHHHH-HHHHHHHHHHHHhhhHhhh
Q 011388 379 FYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV-NIKSLAGSVATL-ANWLVSWIVTMTANFLLDW 447 (487)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~~~g~~~~~ 447 (487)
...+.........+.+. ....+....+..|..|. +.|+...+.... ...++..++|.+.+.+...
T Consensus 92 ---~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 92 ---VGLALLLILRLLQGLGG-GGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ---chHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222222112222 23345666888888887 678888888877 5778888888777766554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.092 Score=50.57 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHH--hhhhhHHHHHHHHHHh---------cChhHHHHHHHHHHHhhhh
Q 011388 88 SIFGSLANVGAMVGAIASGQIAEYIGRK--GSLM--IAAVPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVGV 154 (487)
Q Consensus 88 g~~~s~~~~~~~~~~~~~g~l~d~~Grr--~~~~--~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~ 154 (487)
-.+...|.++-.+|..+..+.. .-++| ++.+ ++=+++..-.++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556667777777666543321 11222 3332 2334455555555433 4667778889999999999
Q ss_pred cchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh
Q 011388 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (487)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 195 (487)
....+..+..+..++++|..+..+...+..+|..+|..++-
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888876653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.38 Score=33.87 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=53.4
Q ss_pred hHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
.....+|...++.+++..+ +......++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888766 77777889999999999999998888888888888887777777653
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.27 Score=46.56 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChh---hhhhHh
Q 011388 347 LLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVN---IKSLAG 423 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~ 423 (487)
+.+..+.++..+|.+++.+........ .........+++.++..+. .+.-|...++..|.++++ .|.+.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~------~~~~~~~~~~gL~lia~G~-G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP------SGIQLGLFYIGLALIAVGT-GGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHH-HCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh------hhHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHhcccchhhhhhhH
Confidence 456677788888888866554332210 0011223344444443333 344455568888888765 467788
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHH
Q 011388 424 SVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAF 466 (487)
Q Consensus 424 g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 466 (487)
.......++|..+++.+.+++.+ .++...|.+.++..+++.+.
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 88899999999999999999998 55655566666655555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.04 Score=48.74 Aligned_cols=146 Identities=18% Similarity=0.082 Sum_probs=93.6
Q ss_pred HHHHHhhhcccccccccccchh--HHHHHhhcCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHH
Q 011388 51 CVLVVALGPIQFGFTCGYSSPT--QAEIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNI 126 (487)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~--~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~ 126 (487)
.++=.+..++..++....+.+. .|- .+.+..+. +|.-|....|.+|-.+..--.-..--++ =--.++..-..++.
T Consensus 252 ~MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff 330 (409)
T KOG3880|consen 252 YMVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFF 330 (409)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHH
Confidence 3333344444444443333332 121 33444443 3588999999988765432211111010 00112222334455
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 011388 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (487)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 197 (487)
+...+..+.++++..++.-+..|+-.|..++...--+.+-.++++|-.+++...++-.+|..++..++-.+
T Consensus 331 ~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 331 LLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 56666778899999999999999998999998888888888899999999999999999999988877544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.89 E-value=8.3 Score=38.75 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=91.9
Q ss_pred HHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC--------
Q 011388 308 NIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLEGFVSED-------- 376 (487)
Q Consensus 308 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 376 (487)
++....+.+... ..............+++++++|.+ ||-+.+.++.++..++..++..........+..
T Consensus 63 ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~ 142 (571)
T KOG1237|consen 63 YLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGN 142 (571)
T ss_pred HHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCC
Confidence 333333444433 333333444556678899999985 888888888888888877777766555333211
Q ss_pred -ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCCh----hhh--hhHhHHHHHHHHHHHHHHHHHhhhHhh-hh
Q 011388 377 -SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPV----NIK--SLAGSVATLANWLVSWIVTMTANFLLD-WS 448 (487)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~--~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~ 448 (487)
.+.........+...+........+.-|...++-+|-++. +.+ ..-+....+..+.|..++..+.-++.+ .+
T Consensus 143 ~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~ 222 (571)
T KOG1237|consen 143 VCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG 222 (571)
T ss_pred cccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 1111111122222222222222334445556777787772 222 355666778888899998888888876 55
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 011388 449 SGGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (487)
+...+.+..++..++.++.
T Consensus 223 w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 223 WKLGFGIPTVLNALAILIF 241 (571)
T ss_pred ceeeccHHHHHHHHHHHHH
Confidence 5555666655555554433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.078 Score=46.95 Aligned_cols=132 Identities=8% Similarity=0.072 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhh
Q 011388 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (487)
Q Consensus 87 ~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 166 (487)
.|.+.-+-.+...+..+.+....||+.--.=..+...+.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 3444445555566666666777888754444445566778888888999999999999999999888777665555433
Q ss_pred CCcCccchhhHHHHHHHHHHHHHHHHhhhhh------hhHHHHHh-hhHHHHHHHhhhhccCCC
Q 011388 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVL-GVLPCTLLIPGLFFIPES 223 (487)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~wr~~f~~-~~~~~~~~~~~~~~~~e~ 223 (487)
+++ ...+.+..+.+.++++|..--..+ +-|...++ ..++.+.+...++.++++
T Consensus 143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 332 234445555555555554332222 44544444 444555555555555443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.25 E-value=12 Score=36.66 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh-c-ccCCCccc---------hhH----HHHHHHHHHH
Q 011388 328 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE-G-FVSEDSRF---------YSI----LGILSLVGLV 392 (487)
Q Consensus 328 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~---------~~~----~~~~~~~~~~ 392 (487)
+.++...+..++++++++.++...........+.++++..... + .+++.... ..+ ...+......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4455666788999999999987766666655555555543211 1 11111000 000 0011111222
Q ss_pred HHHHHHhcCccc-chhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 393 TVVISFSLGVGA-IPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 393 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
+..-.++....+ +.|.++.|....++..+-.++.....++|.++++.+..++.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 468999999999999999999999999999999998887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.073 Score=48.83 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHh--hhhhHHHHHHHHH----------HhcChhHHHHHHHHHHHhhhhc
Q 011388 89 IFGSLANVGAMVGAIASGQIAEY-IGRKGSLMI--AAVPNIIGWLIIS----------FSKDSSFLFMGRLLEGFGVGVI 155 (487)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~--~~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 155 (487)
.+...|.++-.+|....++.--+ -.+|++... .=+++....++|. +.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877764211 134444433 2334444444442 2346678888899999999999
Q ss_pred chhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhh
Q 011388 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (487)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 195 (487)
......+..+..++++|..+..+......+|..+|..++-
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888888888777766653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.85 E-value=5.9 Score=36.91 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=18.8
Q ss_pred hhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHh
Q 011388 408 VIMSEILPVNIKSLAGSVATLANWLVSWIVTMTA 441 (487)
Q Consensus 408 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 441 (487)
.+...+..+++-|-+..........|.+++..++
T Consensus 156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 4455556666666655555555555555554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=88.62 E-value=6.1 Score=34.68 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHH----hhhhhHHHHHHHHHH-hc----ChhHHHHHHHHHHHhhhhcch
Q 011388 88 SIFGSLANVGAMVGAIASGQIAE-YIGRKGSLM----IAAVPNIIGWLIISF-SK----DSSFLFMGRLLEGFGVGVISY 157 (487)
Q Consensus 88 g~~~s~~~~~~~~~~~~~g~l~d-~~Grr~~~~----~~~~~~~~~~~~~~~-~~----~~~~l~~~r~l~G~~~~~~~~ 157 (487)
....-.+..|+.+|....|.... ++.||+.+. .+.+++.++.+..+. .+ ++..+++.-++.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45555667777777788888876 355666554 344455554444212 21 356788888888888766666
Q ss_pred hHHHHHHhhCCcCccchhhHHHHHHHHHHHHH
Q 011388 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML 189 (487)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 189 (487)
+...+--| +++.++.+.--.++..+++|.++
T Consensus 224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence 55443333 23333333333445556666543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.62 E-value=37 Score=32.22 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=26.9
Q ss_pred hhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh--hhcchhhHHHHHHHHHHHHHHHHh
Q 011388 407 WVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD--WSSGGTFLIYGIVCAFTVAFVSLW 470 (487)
Q Consensus 407 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
+...+ .+|++.....++-.+.++.+.+.. -.+.....+ ......|+..+.+..+.+++.+..
T Consensus 139 ~G~a~-~~P~~ytqavm~G~a~aG~l~Sl~-~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 139 YGLAG-LFPSEYTQAVMSGQALAGTLTSLL-RILTKAAFSDSRTSALIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred hhhhh-cCCHHHHHHHHhcchhHhHHHHHH-HHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHH
Confidence 34454 467665443333333333332222 222222222 333444566666655555555543
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.32 E-value=4.9 Score=29.34 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 011388 88 SIFGSLANVGAMVGAIASGQIAEYI 112 (487)
Q Consensus 88 g~~~s~~~~~~~~~~~~~g~l~d~~ 112 (487)
++-.+.-+++..+.....||+.|||
T Consensus 45 a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777778888889999996
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.66 E-value=54 Score=31.95 Aligned_cols=119 Identities=13% Similarity=0.030 Sum_probs=73.5
Q ss_pred HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhH-----------------HHHHHHHH
Q 011388 328 VQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSI-----------------LGILSLVG 390 (487)
Q Consensus 328 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 390 (487)
++++..++..++.+++.+.++...........++++++........-++.+.+.. ..|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 5667777888899999999888776666666666666654421111111100000 00111111
Q ss_pred HHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh
Q 011388 391 LVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 446 (487)
..+.-...+...+-+.+..+.|....++..+-.++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111112222456888999999999999999999999999999999888876
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.00 E-value=24 Score=31.30 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHhhhhhHHHHHHHHHH----hcC---hhHHHHHHHHHHHhhhhcch
Q 011388 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF----SKD---SSFLFMGRLLEGFGVGVISY 157 (487)
Q Consensus 87 ~g~~~s~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~----~~~---~~~l~~~r~l~G~~~~~~~~ 157 (487)
-|.+.+.++++..+|+-+..++..|-.+| ..+.+...+.+....+.-+ +|+ ...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58999999999999999998888766543 4555555444444333322 222 22224555566667889999
Q ss_pred hHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHh----hhhhhhHHHHHhhhHHHHHHHh
Q 011388 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL----GLFVNWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l----~~~~~wr~~f~~~~~~~~~~~~ 215 (487)
....+=+++.|++.|...+.++-.-.++=..++-.. +-..+-|.+|-++.....++.+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999988877655443322222111 1111567888887776666543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.26 E-value=30 Score=31.94 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=64.0
Q ss_pred hHHHHHhhc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHh----hhhhH-HHHHHHHHHh----cChhHH
Q 011388 72 TQAEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI----AAVPN-IIGWLIISFS----KDSSFL 141 (487)
Q Consensus 72 ~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~----~~~~~-~~~~~~~~~~----~~~~~l 141 (487)
.+-.+...+ |-+--|.+.+.+.|.....+|+...-++.|.--.-+.+.. |++.- +...+-..|+ ++-+.+
T Consensus 29 al~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vl 108 (508)
T COG4262 29 ALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVL 108 (508)
T ss_pred HHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHH
Confidence 455566665 5566789999999999999999998888875443322222 22221 1111222333 355678
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAE 165 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~ 165 (487)
++.-++.|.-.|.-.|..+.++..
T Consensus 109 y~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 109 YALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHH
Confidence 889999999999999999988877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 487 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.26 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.14 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=382.19 Aligned_cols=427 Identities=30% Similarity=0.488 Sum_probs=346.0
Q ss_pred CcchhHHHHHHHhhhcccccccccccchhHHHHHhhcCC--------ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011388 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (487)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr 115 (487)
++++.+.+.++.+++.+..|+|.++++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677788888999999999999999999999988743 345679999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHH------------------HhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhH
Q 011388 116 GSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 177 (487)
+++.++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh------------hhHHHHHhhhHHHHHHHhhhhccCCChHHHHhcCChHHHHHHHHHHhC
Q 011388 178 VNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 245 (487)
Q Consensus 178 ~~~~~~~~g~~~~~~l~~~~------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 245 (487)
+.+.+..+|.++++.++... +||+.+.+..+..++.++..+++||||+|+..+++.+++.+.+++..+
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999988877543 688999999998888888899999999999999999999998887765
Q ss_pred CChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHH
Q 011388 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATF 323 (487)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~ 323 (487)
.+...+...+..+... +.++....... ...+...+......+.+..+.+.+..|.+.+.+..+.+... ....
T Consensus 246 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLD---HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 4322221111111110 11111111111 22334456666667777777888889999999888776554 4556
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcc
Q 011388 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 403 (487)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (487)
..++..+++.++++++.||+|||+.+..+...+.++.+.+......... .+.......++..++..+..
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHH
Confidence 6778889999999999999999999998888888877777655433321 23344555556667777888
Q ss_pred cchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-------hhcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 011388 404 AIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-------WSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+ .+....+++++++++++.++.++++||||+
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 8888999999999999999999999999999999998877654 234456788899999999999999999999
Q ss_pred CCHHHHHhhhC
Q 011388 477 RSLEEIQFSFR 487 (487)
Q Consensus 477 ~~~~~~~~~~~ 487 (487)
|++||+|++|+
T Consensus 469 ~tLeei~~~f~ 479 (491)
T 4gc0_A 469 KTLEELEALWE 479 (491)
T ss_dssp CCHHHHGGGTC
T ss_pred CCHHHHHHHhC
Confidence 99999999885
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=315.46 Aligned_cols=392 Identities=13% Similarity=0.108 Sum_probs=284.6
Q ss_pred hhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHH
Q 011388 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (487)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~ 126 (487)
..+.....++++.+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3455566666677777788888999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----h
Q 011388 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (487)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~ 198 (487)
++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHh
Q 011388 199 -WRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (487)
Q Consensus 199 -wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (487)
||+.|++.++..++. ++..+++||+|+....+++++... +... +.++..+++...++...++++
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-----------DYPD---DYNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-----------C----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-----------cccc---cchhhhhcccccccchHHHHH
Confidence 999999988776665 445566888876432111111000 0000 000000011111111235555
Q ss_pred hcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhc--cchHHHHH
Q 011388 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (487)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~ 351 (487)
+++..+...+. .+...........+.|.++++ .|.+... .......++.+++.++.+++.||+ ++|+.+..
T Consensus 250 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKLLWYIAIA----NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHHHHHHHHH----HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 55554333333 333333455667788888877 5777655 666777889999999999999999 99988777
Q ss_pred HHHHHH-HHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHH
Q 011388 352 SSSGMA-ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLAN 430 (487)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 430 (487)
+..+.. ++.+++... +++ ..+.......+.+.+. ....+....+..|.+|++.|+++.|+.+...
T Consensus 326 ~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMN-------PAG------NPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHHTTSC-------CTT------CHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------ccc------CHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 665554 333333211 000 1122222333333322 2333455688999999999999999999999
Q ss_pred HH-HHHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhc
Q 011388 431 WL-VSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWV 471 (487)
Q Consensus 431 ~~-g~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
++ |..++|.+.|.+.+ .++...+.+.+++.+++.++..+..
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999 5666667777777666665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=299.44 Aligned_cols=355 Identities=13% Similarity=0.099 Sum_probs=270.0
Q ss_pred HHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH
Q 011388 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (487)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 129 (487)
.....+++..+..+++.....+.+|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33444455556677887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHhcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhhh--------
Q 011388 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------- 198 (487)
Q Consensus 130 ~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~-------- 198 (487)
+++ ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 889999999999999999999999999999999999999999999999999999999999987762
Q ss_pred ----------------------hHHHHHhhhHHHHHHHhhhhc--cCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHH
Q 011388 199 ----------------------WRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (487)
Q Consensus 199 ----------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (487)
||+.|++.++..++..+..++ .||+++. +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~------------------------ 238 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N------------------------ 238 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C------------------------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c------------------------
Confidence 999998766655554433333 4555320 0
Q ss_pred HHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHhhchhhHHhhHHHH-HHhc-CCCchh--HHHHHHHHHHH
Q 011388 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQV 330 (487)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~~ 330 (487)
+.++++++.+.+++++++++..+...+..++... .......+.+.+ .++. |.+... .......++.+
T Consensus 239 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 239 -----HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp -----CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred -----cccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 0011122334556777777765554444333333 344556777777 7765 777655 66666788899
Q ss_pred HHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhh
Q 011388 331 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 410 (487)
Q Consensus 331 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (487)
++.++.+++.||++||+.+..+.++..++.+++... . . ........+.+.+. ....|..+++.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~------------~-~~~~~~~~~~g~~~-~~~~~~~~~~~ 372 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---G------------G-HVGLIALTLCSAFM-SIQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---C------------H-HHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---C------------C-cHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999999988887776666555432 0 1 11222333333333 33456677888
Q ss_pred cccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hh-cchhhHHHHHH
Q 011388 411 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYGIV 459 (487)
Q Consensus 411 ~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~-~~~~~~~~~~~ 459 (487)
.|.+|++ ++.+.++.. ...+|+.++|.+.|++.| .+ +...+.+.+++
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8999876 888888777 677999999999999999 45 55555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=268.00 Aligned_cols=386 Identities=15% Similarity=0.121 Sum_probs=246.5
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchh
Q 011388 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (487)
Q Consensus 80 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 158 (487)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcCc--cchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhhcc-CCCh----HHH
Q 011388 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PESP----RWL 227 (487)
Q Consensus 159 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p----~~~ 227 (487)
..+++.|++|+++ |++++++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+.. +..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 67788889999999999999998876 89999999877666554443322 2110 000
Q ss_pred HhcCChHHHHHHHHH----------------HhCCC-hhhhHHHHHHHH---H---hhhccchhhhhHHHHhhcccchhH
Q 011388 228 AKMGMTEDFESSLQV----------------LRGFD-TDISIEVNEIKR---S---VASSSRRTAIRFAELKRKRYWFPL 284 (487)
Q Consensus 228 ~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 284 (487)
.++.+.++..+..+. ..+.. .+.......... . .....++.+....+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 111122222222221 01110 000000000000 0 000000000000111111111111
Q ss_pred HHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCC--chhHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-----HHHHHH
Q 011388 285 MIGIGLLVLQQLSGINGVLFYSSNIFAN-AGIS--SSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLL-----ISSSGM 356 (487)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~ 356 (487)
........ ..+.....+.+.+.++ .+.+ ..........+..+++.++.+++.||++||+... .+..+.
T Consensus 289 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 289 FIAAVLFW----AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHH----HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 21222222 2233344455555554 3443 2335566677888888999999999999886544 555555
Q ss_pred HHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHH
Q 011388 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWI 436 (487)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 436 (487)
+++.+++..........+ + ...+.......+.+.+. ....+....+..|.+|++.|+++.|+.+....+|..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 365 GLSFLLMAIPGALYGTSG-K-----VSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHTTTHHHHHHCCCCT-T-----CCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-C-----ccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554322211000 0 01122233333333333 3335666789999999999999999999999999999
Q ss_pred HHHHhhhHhhhhcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 011388 437 VTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 437 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
+|.+.+.+.+.++...+.+.++++++..++.++..++.++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777778888888888777776666655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=268.90 Aligned_cols=352 Identities=14% Similarity=0.108 Sum_probs=255.8
Q ss_pred HhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH
Q 011388 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (487)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 134 (487)
+++..+..+++...+.+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34455556677888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHH
Q 011388 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (487)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~ 210 (487)
++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++..
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 8999999888777
Q ss_pred HHHHh-hhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHH
Q 011388 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (487)
Q Consensus 211 ~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (487)
++..+ ..+.+||+++.. +++++.+.++++++++|..+...+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVD-----------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLI 209 (375)
T ss_dssp HHHHCCCCCSSCCCSTTT-----------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccCCCC-----------------------------------cccccHHHHHHHHhcCcchHHHHHHHH
Confidence 76655 556678875420 001112233455666655444444333
Q ss_pred HHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH-HHHHHHHHHH
Q 011388 290 LLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG-MAASFFLVSV 365 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~ 365 (487)
+... .......+.|.+.++ .|.++.. .......++.+++.++.+++.||.+++. ..+... ...+...+..
T Consensus 210 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 210 GGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIP 283 (375)
T ss_dssp HHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3332 233444455555444 4554443 5566667888899999999999988732 222222 2222221111
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
..... ...+.......+.+.+.+. ..+....+..|..| ++|+++.|+.+....+|..++|.+.|.+.
T Consensus 284 ~~~~~-----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 284 DWFGV-----------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred hhhcc-----------ccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11000 0122233333344444433 34666688999998 78999999999999999999999999998
Q ss_pred hhhcchhhHHHHHHH
Q 011388 446 DWSSGGTFLIYGIVC 460 (487)
Q Consensus 446 ~~~~~~~~~~~~~~~ 460 (487)
+.+.....+...++.
T Consensus 351 ~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 351 QTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHHH
Confidence 854444444443333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=251.04 Aligned_cols=365 Identities=12% Similarity=0.043 Sum_probs=222.8
Q ss_pred cccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHH---HHHHHhcCh-hHH
Q 011388 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFL 141 (487)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l 141 (487)
....+.+|. +++++|.++.+.|++.+.+.+++.++++++|+++||+|||+++.++..+++++. ..+++++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666 566799999999999999999999999999999999999999998887765532 222222221 123
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHhhCCc--CccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHhh
Q 011388 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (487)
Q Consensus 142 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~ 216 (487)
+..+.+.|++.+...+.....+.++.++ ++++...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4556666655555444444445555443 3556667777777788888888887766 7999999887765555555
Q ss_pred hhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHHHHHh
Q 011388 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (487)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (487)
.++.+|+|+. +.++++. + .+++++....+++++++++..+...+.......
T Consensus 184 ~~~~~~~~~~---~~~~~~~------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 234 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVANA------------V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC--- 234 (417)
T ss_dssp SCSSCCCCSC---SSCSSSS------------S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH---
T ss_pred HHHcCccccc---ccccccc------------c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH---
Confidence 5554443310 0000000 0 000011112234556666554433322221111
Q ss_pred hchhhHHhhHHHHHHhc-CC---Cchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011388 297 SGINGVLFYSSNIFANA-GI---SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~---~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (487)
.+.....+.|.++.+. +. +... .......++.+++.++.+++.||+|||+.+..+....+++.+.+.+. .
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~ 310 (417)
T 2cfq_A 235 -TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T 310 (417)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred -HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 1222223345554432 21 1111 33445566778899999999999999998887776666554443211 0
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH-HHHHHHHHHHHHHHhhhHhh-hh
Q 011388 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WS 448 (487)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~-~~ 448 (487)
..+.......+...... ...+..+.+..|.+|++.|+++.++. +....+|++++|.+.|++.+ .+
T Consensus 311 ------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 311 ------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp ------------SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred ------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence 01111122112222211 11233457899999999999999994 88899999999999999988 55
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 011388 449 SGGTFLIYGIVCAFTVAFVSLWVPETKGR 477 (487)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
+...+.+.+++++++.++.+...+|+++.
T Consensus 378 ~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 378 FQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 55667777777777766666656665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=241.12 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=132.9
Q ss_pred HHHHHhhcC------CChhhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHhhhhhHHHHHHHHHHhc-ChhHHHHH
Q 011388 73 QAEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMG 144 (487)
Q Consensus 73 ~~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 144 (487)
.+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ |++.++++
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345678899 9999999999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHHHhhhhcchhHHHHHHhhCCcCccchhhHH---HHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhh
Q 011388 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (487)
Q Consensus 145 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 217 (487)
|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877666 8999999999999998766 89999998887766655444
Q ss_pred hc
Q 011388 218 FF 219 (487)
Q Consensus 218 ~~ 219 (487)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 33
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=133.79 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=130.9
Q ss_pred cccchhHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHhhhhhHH-HHHHHHHHh--cChhH
Q 011388 67 GYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFS--KDSSF 140 (487)
Q Consensus 67 ~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~ 140 (487)
.......|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 3444567777666 899999999999999999999999999999999 99999988877776 666666666 36778
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHhhhHHHHHHHh
Q 011388 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (487)
Q Consensus 141 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~ 215 (487)
+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ ||+..|++.++..++..+
T Consensus 349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999 999999988776 799999888877776655
Q ss_pred hhhcc
Q 011388 216 GLFFI 220 (487)
Q Consensus 216 ~~~~~ 220 (487)
..+++
T Consensus 429 ~~~~~ 433 (451)
T 1pw4_A 429 LLIVV 433 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=125.92 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchhHHHHH
Q 011388 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (487)
Q Consensus 84 ~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 163 (487)
..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888899999999999999999999999999988888888888888888888888888988777777788999
Q ss_pred HhhCCcCccchhhHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhh-hhccCCCh
Q 011388 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (487)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p 224 (487)
.|.+|++.|+++.++ ++....+|..++|.+++.+ |++..|.+.++..++..+. ++..||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 4778889999999888765 7788888877776666544 44466553
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=126.34 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=113.5
Q ss_pred ccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhc----ChhHHHH
Q 011388 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSFLFM 143 (487)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ 143 (487)
.+....|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 334456778888888888888888888999999999999999999999999999888888777665431 1122222
Q ss_pred HHHH-HHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHhhhHHHHH
Q 011388 144 GRLL-EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTL 212 (487)
Q Consensus 144 ~r~l-~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----------~wr~~f~~~~~~~~~ 212 (487)
.-++ .+....+..+....+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.+..+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222 22222334567788999999999999999999998888888876554332 344566666666655
Q ss_pred H-HhhhhccCCCh
Q 011388 213 L-IPGLFFIPESP 224 (487)
Q Consensus 213 ~-~~~~~~~~e~p 224 (487)
. ++.++++||+.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 5 44567799984
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=117.09 Aligned_cols=145 Identities=12% Similarity=-0.020 Sum_probs=108.2
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 011388 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
.....+.............|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++.+++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 110 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 33333333333456667788888888988776 6677778889999999999999999999999999888888877743
Q ss_pred HHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 011388 366 AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 445 (487)
.....+ .+..++..++.+.+.+ ...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 111 ~~~~~~------------~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 111 AAEIMN------------YTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHTTC------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccccc------------HHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 2233334444444333 334555689999999999999999999999999999999999998
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-12 Score=122.68 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=120.1
Q ss_pred chhHHHHH-hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-----hhhhhHHHHHHHHHHhc-------
Q 011388 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK------- 136 (487)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~~~~~~~~------- 136 (487)
...+|... +.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455444 446777678899999999999999999999999999987665 77777777777766643
Q ss_pred --ChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHH
Q 011388 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (487)
Q Consensus 137 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~ 211 (487)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|.+.+...+
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSV 462 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999999999999999999998877 56667777666655
Q ss_pred HHHhh-hhccCC
Q 011388 212 LLIPG-LFFIPE 222 (487)
Q Consensus 212 ~~~~~-~~~~~e 222 (487)
+..+. +++.++
T Consensus 463 ~~~~~~~~~~~~ 474 (491)
T 4aps_A 463 VLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHH
Confidence 55443 333444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=115.34 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=118.8
Q ss_pred hhhHHhhHHHHHHhcCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011388 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 376 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (487)
........|.+.++.|.++.+ .......++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 444555667777788887766 667777889999999999999999999999998888888877776541
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHHHHHHHHHHhhhHhh-hhcchhhHH
Q 011388 377 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 455 (487)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~~~~~~~~ 455 (487)
..+.......+.+.+. ....+....+..|.+|+++|+++.+..+....+|..++|.+.+.+.+ .++...+.+
T Consensus 87 ------~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 ------SLTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp ------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 1122333333333332 23345666889999999999999999999999999999999999988 466566666
Q ss_pred HHHHHHHHHHHHHHhcccCCC
Q 011388 456 YGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~ 476 (487)
.+++.++..+...+..||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHCcccCC
Confidence 666666555545555666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.9e-10 Score=108.09 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=106.7
Q ss_pred hhHHhhHHHHHH-hcC------CCchh--HHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHHHh
Q 011388 300 NGVLFYSSNIFA-NAG------ISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFL 369 (487)
Q Consensus 300 ~~~~~~~~~~~~-~~g------~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (487)
+....+.+.++. +.| .+..+ .......++..++.++.|+++||+ |||+.+..+.++..++.++..+..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-- 106 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 334445555544 456 66555 667777888999999999999999 999999988888877777665421
Q ss_pred hcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHH---HHHHHHHHHHHHHHHhhhHhh
Q 011388 370 EGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV---ATLANWLVSWIVTMTANFLLD 446 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~~~g~~~~ 446 (487)
. ..+...+...+.+.+. ....+...++..|.+|+++|+++.+. .+....+|..++|.+.+.+.+
T Consensus 107 -~-----------~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 107 -H-----------SVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp -S-----------CHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred -c-----------cHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1122333333333333 34456667899999999999766666 889999999999999999988
Q ss_pred -hhcchhhHHHHHHHHHHHHHH
Q 011388 447 -WSSGGTFLIYGIVCAFTVAFV 467 (487)
Q Consensus 447 -~~~~~~~~~~~~~~~~~~~~~ 467 (487)
.++...+.+.+++.++..++.
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 556566666666555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-12 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 65.9 bits (159), Expect = 3e-12
Identities = 51/414 (12%), Positives = 117/414 (28%), Gaps = 26/414 (6%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLI 131
+ + + + S ++ G +++ + L++AA + +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191
+ + +F+ L G+ G+ + Q RG + SV + +G +
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 192 LLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 251
LL L + + L M D S + +
Sbjct: 170 LLFLL-------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 222
Query: 252 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311
+ +++ + + L K W+ + + + +L+ GI
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY--GILDWSPTYLKEVK 280
Query: 312 NAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEG 371
+ + S+ A F + T + W+ DK R M V +
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---- 336
Query: 372 FVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANW 431
+ + V+ G + + E+ P A L +
Sbjct: 337 -------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 389
Query: 432 LVSWIVT--MTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 483
L + + + + G F++ V + + + K R + +Q
Sbjct: 390 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.34 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-39 Score=313.46 Aligned_cols=401 Identities=12% Similarity=0.078 Sum_probs=272.9
Q ss_pred chhHHHHHHHhhhcccccccccccchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhH
Q 011388 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (487)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~ 125 (487)
+.+|.+...++++.+..+++...++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 44567777777777777788888888888765 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cChhHHHHHHHHHHHhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHHHHHHHHHhhhhh----
Q 011388 126 IIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (487)
Q Consensus 126 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---- 197 (487)
+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999999876 48899999999999999999999999999999999999999999999999999998877654
Q ss_pred -hhHHHHHhhhHHHHHH-HhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHH
Q 011388 198 -NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (487)
Q Consensus 198 -~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (487)
+||+.|++.++..++. ++.+++++|+|+.......++. .++..++..+..+++...++...+..
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------KNDYPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------CCC-------------CCTHHHHHHT
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------hhhcccchhhccccccchhhHHHHHH
Confidence 7999888877666655 4445556666643221111110 00000111111111222223334445
Q ss_pred hhcccchhHHHHHHHHHHHHhhchhhHHhhHHHHHHh-cCCCchh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 011388 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (487)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (487)
++++..+ ......+...........+.+.++.+ .+.+... .......+..+++.++.|++.||.+|++.....
T Consensus 246 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 246 LPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp SSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCchHH----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence 5544433 22233333333345566677777765 3665544 666777888999999999999999887654443
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHHHHHHHH
Q 011388 353 SSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWL 432 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 432 (487)
.....+............. ...+...+..++.+ ....+..+....+..|.+|++.|+++.|+.+...++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 322 VFFMTLVTIATIVYWMNPA----------GNPTVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390 (447)
T ss_dssp HHHHHHHHHHHHHTTSCCT----------TCHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 3333222222221111100 01122222222222 222333455668889999999999999999998887
Q ss_pred H-HHHHHHHhhhHhh-hhcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 011388 433 V-SWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKG 476 (487)
Q Consensus 433 g-~~i~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
+ ..++|.+.|++.| .++...+.+.+++++++.++...+.+++++
T Consensus 391 ~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5 5668999999998 566666777777666666655555444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=8.9e-30 Score=241.34 Aligned_cols=369 Identities=12% Similarity=0.046 Sum_probs=239.8
Q ss_pred ccccccchhHHH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHH-
Q 011388 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL- 141 (487)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l- 141 (487)
+..+...|.+|. +.+++|+|++++|++.+++.+++.++++++|+++||+||||+++++..+..++..+..+.++....
T Consensus 21 ~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T d1pv7a_ 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 444566678876 677899999999999999999999999999999999999999999999999999888887765543
Q ss_pred ---HHHHHHHHHhhhhcchhHHHHHHhhCCc--CccchhhHHHHHHHHHHHHHHHHhhhhh---hhHHHHHh-hhHHHHH
Q 011388 142 ---FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVL-GVLPCTL 212 (487)
Q Consensus 142 ---~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~wr~~f~~-~~~~~~~ 212 (487)
++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+ +|+..+.. .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 180 (417)
T d1pv7a_ 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHH
Confidence 4555555555555555554444444432 3445567777778888888888888766 45554444 4444445
Q ss_pred HHhhhhccCCChHHHHhcCChHHHHHHHHHHhCCChhhhHHHHHHHHHhhhccchhhhhHHHHhhcccchhHHHHHHHHH
Q 011388 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (487)
Q Consensus 213 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (487)
..+..+..+|+|+... +.+ +..+.+++.......+..+++..+..........
T Consensus 181 ~~~~~~~~~~~~~~~~---~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 181 AVLLFFAKTDAPSSAT---VAN------------------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HHHHHSSCCCSCSSSC---SSH------------------------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchh---hhh------------------------hhhhhcccccccccccccccccccchhhhhHHHH
Confidence 5556666776653110 000 0111112222222333333333333333222222
Q ss_pred HHHhhchhhHHhhHHHHHHhcCCC----chh--HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 011388 293 LQQLSGINGVLFYSSNIFANAGIS----SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (487)
... .........+....... ... .......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 309 (417)
T d1pv7a_ 234 CTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc
Confidence 221 11222222222221111 111 44555567788899999999999999999988888877766665532
Q ss_pred HHhhcccCCCccchhHHHHHHHHHHHHHHHHHhcCcccchhhhhcccCChhhhhhHhHHH-HHHHHHHHHHHHHHhhhHh
Q 011388 367 FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLL 445 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~ 445 (487)
...+.......+.+.+.+. ..+...++..|.+|++.|+++.|+. +....+|..++|.+.|++.
T Consensus 310 ---------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 310 ---------------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred ---------------cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333333333332 3455668899999999999999985 5677899999999999999
Q ss_pred h-hhcchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 011388 446 D-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSL 479 (487)
Q Consensus 446 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
| .++...+.+.++++++..++..+.++++++.+.
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 9 677778888888888888887788877766654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.3e-14 Score=135.86 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=124.2
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcchh
Q 011388 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (487)
Q Consensus 79 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 158 (487)
+.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 33455667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcCccchhhHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHhhhHHHHHHHh-hhhccCC
Q 011388 159 VPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (487)
Q Consensus 159 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e 222 (487)
..+++.|.+|+++|++..++. +....+|..++|.+++.+ ||+..|++.++..++..+ ..+.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999975 566778888888887766 899988887766665543 4444543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=6.7e-12 Score=118.53 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=110.4
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHhhhhhHHHHHHHHHH-----hcChhHHHHHHHHHH
Q 011388 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEG 149 (487)
Q Consensus 75 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G 149 (487)
.+.+.++.+..+.++..+...++..++.++.|+++||++||+..........+....... ..+.+...++-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999876544443333332222222 346777788888999
Q ss_pred HhhhhcchhHHHHHHhhCCcCccchhhHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHhhhHHHHHHHhhhh
Q 011388 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (487)
Q Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 218 (487)
++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.+ ||+..|++.+...++..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999999999998877666 566778777665 899888877666555544433
|