Citrus Sinensis ID: 011432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHccccccccccccccccEEEcccEEccccccccccccccccHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccEEEccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHccccccEEEccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEc
cccccHHcccccccccccccccccccccccccccccccccccccEEcccccccccHccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccEEEcccccccccccccccccccccccccccEEEEEEEEEccHHcccHHHHHHHHHHHccccEEEEEccccccEEEEEEEEccEEEEEccccccccEcccccccccccccccccccccccHHcccccEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccHccccccccccccccccccccccccccHcccEEc
mkgfrekagaskcfskstpdtpnrslasvgselgssesksskgsLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSmrrihervlgpsrtgissstsdIWLLGVCHKIaqdealgdaagnnglaefnqdFSSRILISYrkgfdpigdskitsdvgwgcmlRSSQMLVAQALLFHrlgrpwrkplqkpfdREYVEILHlfgdsetspfsIHNLLQAGKAyglaagswvgpyaMCRSWEALARCQraetglgcqslpMAIYVVsgdedgerggapvvciddasrhcsvfskgqadwtpiLLLVPLVlglekvnpryiptlrltftfpqslgivggkpgastYIVGVQeesaiyldphdvqpvinigkddleadtstyhsDVIRHIhldsidpslaigfycrdkddfDDFCARASKLaeesngaplftvtqthkkpvnhsdvlgetggvpeddslgvmsmndavgnaheddwqll
mkgfrekagaskcfskstpdtpnrsLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETYSESSasekkavhnksngwtaAVKRLVtagsmrrihervlgpsrtgisssTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAEtglgcqslPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLaeesngaplftvtqthkkpvnhsdvlgetggvpedDSLGVMSMNDAvgnaheddwqll
MKGFREKAGASKCFSKSTPDTPNRslasvgselgssesksskgsllsslfnsafsvfETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQdealgdaagnnglaeFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIlllvplvlglEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
*****************************************************FSVF*******************GWTAAVKRLVTAGSMRRIHERVLG*****I**STSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS************************************************************
***********************************************************************************RLVTAGSMRRIHERVLGPSR***SSSTSDIWLLGVCHKIAQ***********GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASR**********DWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK****SNGAPLFTVTQTH********************************NAHEDDWQLL
*********************************************LSSLFNSAFSVFE*****************NGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
***********************************************SLFNSAFSVFETYS**************NGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQD*******GNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKK********************GVMSMN***G*AH*D***LL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query486 2.2.26 [Sep-21-2011]
A2Q1V6487 Cysteine protease ATG4 OS N/A no 0.993 0.991 0.655 1e-174
Q8S929467 Cysteine protease ATG4a O yes no 0.919 0.957 0.607 1e-159
Q7XPW8478 Cysteine protease ATG4B O yes no 0.897 0.912 0.589 1e-147
Q2XPP4478 Cysteine protease ATG4B O N/A no 0.897 0.912 0.587 1e-146
Q9M1Y0477 Cysteine protease ATG4b O no no 0.927 0.945 0.572 1e-143
A2XHJ5473 Cysteine protease ATG4A O N/A no 0.897 0.921 0.577 1e-142
Q75KP8474 Cysteine protease ATG4A O no no 0.895 0.917 0.580 1e-139
Q8BGE6393 Cysteine protease ATG4B O yes no 0.670 0.829 0.327 9e-53
Q6DG88394 Cysteine protease ATG4B O yes no 0.658 0.812 0.352 3e-52
Q9Y4P1393 Cysteine protease ATG4B O yes no 0.670 0.829 0.333 1e-51
>sp|A2Q1V6|ATG4_MEDTR Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1 Back     alignment and function desciption
 Score =  610 bits (1573), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/488 (65%), Positives = 377/488 (77%), Gaps = 5/488 (1%)

Query: 1   MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETY 60
           +K   ++  A+KC SKS+ +  + +     S+ GSS+SK  K SL S+ F S FSV ETY
Sbjct: 3   LKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETY 62

Query: 61  SESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCH 120
           SESS+SEKK VH++++GW AAV+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCH
Sbjct: 63  SESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCH 122

Query: 121 KIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQML 180
           KI+Q E+ GD    N  A F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQML
Sbjct: 123 KISQHESTGDVDIRNVFAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQML 182

Query: 181 VAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSW 240
           VAQALLFH+LGR WRK + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSW
Sbjct: 183 VAQALLFHKLGRSWRKTVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSW 242

Query: 241 VGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSV 300
           VGPYAMCR+WE LAR QR +   G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C  
Sbjct: 243 VGPYAMCRTWEVLARNQREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLE 302

Query: 301 FSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQE 360
           FS+G   WTP+LLLVPLVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ 
Sbjct: 303 FSRGLVPWTPLLLLVPLVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQN 362

Query: 361 ESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDD 420
           + A YLDPH+V+PV+NI  D  E +TS+YH ++ RH+ LDSIDPSLAIGFYCRDKDDFDD
Sbjct: 363 DKAFYLDPHEVKPVVNITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDD 422

Query: 421 FCARASKLAEESNGAPLFTVTQTHKKP--VNHSDVLGETGGVPEDDSLGVMSMNDAVGNA 478
           FC+RA+KLAEESNGAPLFTV Q+   P  V  + V G+     EDDSL +  +NDA    
Sbjct: 423 FCSRATKLAEESNGAPLFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDA---G 479

Query: 479 HEDDWQLL 486
           +EDDWQ L
Sbjct: 480 NEDDWQFL 487
Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.
Medicago truncatula (taxid: 3880)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q8S929|ATG4A_ARATH Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1 Back     alignment and function description
>sp|Q7XPW8|ATG4B_ORYSJ Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1 Back     alignment and function description
>sp|Q2XPP4|ATG4B_ORYSI Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2 Back     alignment and function description
>sp|Q9M1Y0|ATG4B_ARATH Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1 Back     alignment and function description
>sp|A2XHJ5|ATG4A_ORYSI Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1 Back     alignment and function description
>sp|Q75KP8|ATG4A_ORYSJ Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1 Back     alignment and function description
>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2 Back     alignment and function description
>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2 Back     alignment and function description
>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
255576671489 Cysteine protease ATG4B, putative [Ricin 0.991 0.985 0.734 0.0
359495820486 PREDICTED: cysteine protease ATG4-like [ 0.985 0.985 0.713 0.0
224117658482 predicted protein [Populus trichocarpa] 0.987 0.995 0.715 0.0
147862867489 hypothetical protein VITISV_021940 [Viti 0.985 0.979 0.713 0.0
224092798481 predicted protein [Populus trichocarpa] 0.985 0.995 0.700 0.0
449442361483 PREDICTED: cysteine protease ATG4-like [ 0.987 0.993 0.687 0.0
356531828486 PREDICTED: cysteine protease ATG4-like [ 0.989 0.989 0.689 1e-179
356568569485 PREDICTED: cysteine protease ATG4-like [ 0.987 0.989 0.693 1e-178
357507987487 Cysteine protease ATG4 [Medicago truncat 0.993 0.991 0.655 1e-172
388514549489 unknown [Lotus japonicus] 0.995 0.989 0.635 1e-164
>gi|255576671|ref|XP_002529225.1| Cysteine protease ATG4B, putative [Ricinus communis] gi|223531343|gb|EEF33181.1| Cysteine protease ATG4B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/493 (73%), Positives = 413/493 (83%), Gaps = 11/493 (2%)

Query: 1   MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETY 60
           MKGFRE+  AS+C SK   DTPNRSL S   E GS+   S+KGSL SS F SAFSVFETY
Sbjct: 1   MKGFRERV-ASRCSSKCPVDTPNRSLTSDCLESGSN--FSTKGSLWSSFFASAFSVFETY 57

Query: 61  SESS-ASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVC 119
            ES  ASEKK  H++ NGWT+AVK++V+ GSMRRIHERVLGPSRTGISS+TSDIWLLGVC
Sbjct: 58  RESPPASEKKGSHSRHNGWTSAVKKIVSGGSMRRIHERVLGPSRTGISSTTSDIWLLGVC 117

Query: 120 HKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQM 179
           +KI++DE+ G+A   N LAEF  D+SSRIL++YR+GFD IGDSK  SDVGWGCMLRSSQM
Sbjct: 118 YKISEDES-GNADTGNALAEFTHDYSSRILMTYRRGFDAIGDSKYISDVGWGCMLRSSQM 176

Query: 180 LVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGS 239
           LVAQALLFH+LGR W KP QKP D+ YVEILHLFGDSE +PFSIHNL+QAGKAY LAAGS
Sbjct: 177 LVAQALLFHKLGRAWTKPFQKPMDQAYVEILHLFGDSEAAPFSIHNLIQAGKAYSLAAGS 236

Query: 240 WVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCS 299
           WVGPYAMCRSWE+LAR +R E  L  QSLPMA+YVVSGDEDGERGGAPVV I+DASRHC 
Sbjct: 237 WVGPYAMCRSWESLARSKREENSLEYQSLPMAVYVVSGDEDGERGGAPVVYIEDASRHCL 296

Query: 300 VFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQ 359
            FS+GQADWTPILLLVPLVLGL+KVNPRYIP+L+ TFTF QSLGI+GGKPGASTYIVGVQ
Sbjct: 297 EFSRGQADWTPILLLVPLVLGLDKVNPRYIPSLQATFTFSQSLGIMGGKPGASTYIVGVQ 356

Query: 360 EESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFD 419
           +++A YLDPH+VQ V+NIG+DD+EADTS+YHSD++RHI L SIDPSLAIGFYCRDKDDFD
Sbjct: 357 DDNAFYLDPHEVQSVVNIGRDDIEADTSSYHSDIVRHIPLHSIDPSLAIGFYCRDKDDFD 416

Query: 420 DFCARASKLAEESNGAPLFTVTQTHK--KPVNHSDVL-GETGGVPEDDSLGV-MSMNDAV 475
           +FC  ASKLA++S GAPLFTV   HK  KPV+H D+L  E   V EDDS+ V M +ND  
Sbjct: 417 EFCLLASKLADDSQGAPLFTVAHCHKLPKPVSHGDMLNNEDDEVQEDDSVNVMMPVNDDA 476

Query: 476 --GNAHEDDWQLL 486
             G A ED+WQLL
Sbjct: 477 EGGGAQEDEWQLL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495820|ref|XP_003635099.1| PREDICTED: cysteine protease ATG4-like [Vitis vinifera] gi|296086874|emb|CBI33041.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117658|ref|XP_002331599.1| predicted protein [Populus trichocarpa] gi|222873995|gb|EEF11126.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147862867|emb|CAN81102.1| hypothetical protein VITISV_021940 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092798|ref|XP_002309707.1| predicted protein [Populus trichocarpa] gi|222852610|gb|EEE90157.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442361|ref|XP_004138950.1| PREDICTED: cysteine protease ATG4-like [Cucumis sativus] gi|449512710|ref|XP_004164121.1| PREDICTED: cysteine protease ATG4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356531828|ref|XP_003534478.1| PREDICTED: cysteine protease ATG4-like [Glycine max] Back     alignment and taxonomy information
>gi|356568569|ref|XP_003552483.1| PREDICTED: cysteine protease ATG4-like [Glycine max] Back     alignment and taxonomy information
>gi|357507987|ref|XP_003624282.1| Cysteine protease ATG4 [Medicago truncatula] gi|147742964|sp|A2Q1V6.1|ATG4_MEDTR RecName: Full=Cysteine protease ATG4; AltName: Full=Autophagy-related protein 4 gi|124359485|gb|ABN05923.1| Peptidase C54 [Medicago truncatula] gi|355499297|gb|AES80500.1| Cysteine protease ATG4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388514549|gb|AFK45336.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
TAIR|locus:2051754467 AT2G44140 "AT2G44140" [Arabido 0.847 0.882 0.583 3e-133
TAIR|locus:2080447477 AT3G59950 [Arabidopsis thalian 0.979 0.997 0.515 3.4e-132
UNIPROTKB|Q2XPP4478 ATG4B "Cysteine protease ATG4B 0.858 0.872 0.555 2.8e-128
ZFIN|ZDB-GENE-040917-3394 atg4b "ATG4 autophagy related 0.656 0.809 0.333 3.8e-46
MGI|MGI:1913865393 Atg4b "autophagy related 4B, c 0.635 0.786 0.330 1.5e-44
UNIPROTKB|F1MJZ9393 ATG4B "Cysteine protease ATG4B 0.635 0.786 0.345 1.9e-44
UNIPROTKB|Q6PZ03393 ATG4B "Cysteine protease ATG4B 0.635 0.786 0.345 1.9e-44
UNIPROTKB|Q9Y4P1393 ATG4B "Cysteine protease ATG4B 0.635 0.786 0.336 6.4e-44
UNIPROTKB|F1LRG2394 Atg4b "Protein Atg4b" [Rattus 0.635 0.784 0.327 3.5e-43
ZFIN|ZDB-GENE-050522-430375 atg4a "ATG4 autophagy related 0.584 0.757 0.331 1.5e-42
TAIR|locus:2051754 AT2G44140 "AT2G44140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
 Identities = 251/430 (58%), Positives = 314/430 (73%)

Query:    58 ETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLL 116
             + Y ESS S  K V    NGWTA VKR+ + +G++RR  ERVLGP+RTG+ S+TSD+WLL
Sbjct:    55 QPYRESSTSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLL 114

Query:   117 GVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 176
             GVC+KI+                   DFSS+IL++YRKGF+P  D+  TSDV WGCM+RS
Sbjct:   115 GVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRS 174

Query:   177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 236
             SQML AQALLFHRLGR W K  + P ++EY+E L  FGDSE S FSIHNL+ AG +YGLA
Sbjct:   175 SQMLFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLA 233

Query:   237 AGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASR 296
             AGSWVGPYA+CR+WE+LA  +R +T    Q+LPMA+++VSG EDGERGGAP++CI+DA++
Sbjct:   234 AGSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATK 293

Query:   297 HCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIV 356
              C  FSKGQ++WTPI          + VNPRYIP+L  TFTFPQS+GI+GGKPGASTYIV
Sbjct:   294 SCLEFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIV 353

Query:   357 GVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKD 416
             GVQE+   YLDPH+VQ V+ + K+  + DTS+YH +V+R++ L+S+DPSLA+GFYCRDKD
Sbjct:   354 GVQEDKGFYLDPHEVQQVVTVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKD 413

Query:   417 DFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVG 476
             DFDDFC RA KLAEESNGAPLFTVTQTH   +N S+      G  +DDS           
Sbjct:   414 DFDDFCLRALKLAEESNGAPLFTVTQTHTA-INQSNY-----GFADDDS----------E 457

Query:   477 NAHEDDWQLL 486
             +  EDDWQ+L
Sbjct:   458 DEREDDWQML 467
GO:0006914 "autophagy" evidence=ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2080447 AT3G59950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPP4 ATG4B "Cysteine protease ATG4B" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040917-3 atg4b "ATG4 autophagy related 4 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1913865 Atg4b "autophagy related 4B, cysteine peptidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJZ9 ATG4B "Cysteine protease ATG4B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PZ03 ATG4B "Cysteine protease ATG4B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y4P1 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRG2 Atg4b "Protein Atg4b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-430 atg4a "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S929ATG4A_ARATH3, ., 4, ., 2, 2, ., -0.60700.91970.9571yesno
Q7XPW8ATG4B_ORYSJ3, ., 4, ., 2, 2, ., -0.58940.89710.9121yesno
Q2XPP4ATG4B_ORYSI3, ., 4, ., 2, 2, ., -0.58710.89710.9121N/Ano
A2XHJ5ATG4A_ORYSI3, ., 4, ., 2, 2, ., -0.57740.89710.9217N/Ano
A2Q1V6ATG4_MEDTR3, ., 4, ., 2, 2, ., -0.65570.99380.9917N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070004
hypothetical protein (481 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
pfam03416277 pfam03416, Peptidase_C54, Peptidase family C54 1e-131
>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54 Back     alignment and domain information 
 Score =  381 bits (981), Expect = e-131
 Identities = 133/292 (45%), Positives = 170/292 (58%), Gaps = 18/292 (6%)

Query: 136 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR 195
           GL  F  D  SRI  +YR+GF PIG +  TSD GWGCMLR+ QML+AQAL+ H LGR WR
Sbjct: 3   GLEAFLSDVYSRIWFTYRRGFPPIGGTGFTSDCGWGCMLRTGQMLLAQALIIHHLGRDWR 62

Query: 196 KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALA 254
            P +K  D EY +IL  FGDS  +PFSIH  +Q GK+  G   G W GP  + R  + L 
Sbjct: 63  WPAEKEPDEEYKKILAWFGDSPDAPFSIHQFVQMGKSLCGKKPGEWFGPNTVARILKKLV 122

Query: 255 RCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLL 314
                 +GL           V  D+  E+              CS  + GQ+ W P+LLL
Sbjct: 123 -KFDDWSGL--AVYVAMDGTVVYDDIVEK--------------CSAPNNGQSAWKPLLLL 165

Query: 315 VPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPV 374
           +PL LG++K+NP YI  L+  F+ PQS+GI+GGKP  S Y VG Q +  IYLDPH VQ  
Sbjct: 166 IPLRLGIDKINPVYIEALKECFSLPQSVGIIGGKPNQSLYFVGFQGDELIYLDPHTVQEA 225

Query: 375 INIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS 426
           + + +     D  TYH   +R +H   +DPSLAIGF CRD+DDFD++C R  
Sbjct: 226 VTVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAIGFLCRDEDDFDNWCERLQ 277

Length = 277

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 486
KOG2674409 consensus Cysteine protease required for autophagy 100.0
PF03416278 Peptidase_C54: Peptidase family C54 This family be 100.0
PF07910218 Peptidase_C78: Peptidase family C78; InterPro: IPR 97.91
KOG2433577 consensus Uncharacterized conserved protein [Funct 96.84
KOG2674409 consensus Cysteine protease required for autophagy 93.68
KOG4696393 consensus Uncharacterized conserved protein [Funct 90.64
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-111  Score=862.49  Aligned_cols=359  Identities=42%  Similarity=0.792  Sum_probs=323.0

Q ss_pred             cccccccCCChhHHHHHHh-hcchHHHHHHHhhCCCCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccc
Q 011432           68 KKAVHNKSNGWTAAVKRLV-TAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSS  146 (486)
Q Consensus        68 ~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~S  146 (486)
                      ++.+++..+.|+.++++++ .++..++++++++.+..++++..+++||+||++|.+..++.          ++|++||.|
T Consensus         3 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lg~~y~is~~~~----------e~f~~D~~S   72 (409)
T KOG2674|consen    3 HSIVCTTRQSWTLFVKTLGEASSHIRFLGKTVLFAELENIESGGEDVWILGRRYKISTEES----------EEFLSDVSS   72 (409)
T ss_pred             ccchhhhhhhHHHHHHHHHhhhhhhhhhhheecccccccCCCCCcceEEEeeeeeeccCHH----------HHHHHhhhh
Confidence            5667889999999999984 45567777888899999999999999999999999987641          899999999


Q ss_pred             cEEEeecCCCCCCCCCcccccCCccccccchhhHHHHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHH
Q 011432          147 RILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL  226 (486)
Q Consensus       147 riWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~i  226 (486)
                      |||||||++|+||+++++|||+|||||||||||||||||+++||||+|+|+..++.+++|.+||++|.|.|.+|||||||
T Consensus        73 riw~TYR~~F~pig~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~  152 (409)
T KOG2674|consen   73 RLWFTYRRGFSPIGGTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQI  152 (409)
T ss_pred             cceeeccCCCCcccCCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHH
Confidence            99999999999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeC--------CCCCCCCCCceEecccccccc
Q 011432          227 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSG--------DEDGERGGAPVVCIDDASRHC  298 (486)
Q Consensus       227 v~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~vyv~s~--------~~dge~g~~~vv~~dd~~~~c  298 (486)
                      +++|...||++|+||||+++|+++++|....        .+.+.++||+.+        .+...+++.+++++.+..+.|
T Consensus       153 ~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~--------~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~  224 (409)
T KOG2674|consen  153 VQMGVGEGKAVGSWFGPNTVAQVLKKLARFD--------PWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQS  224 (409)
T ss_pred             HHHHhhccCCCccccCCcHHHHHHHHhhccC--------CCCCccEEEecccceEEeeeehhcccCCcccceecccchhh
Confidence            9999999999999999999999999998753        234556666543        344566778888888888888


Q ss_pred             ccccCCCCCCccEEEEEeeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccC
Q 011432          299 SVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIG  378 (486)
Q Consensus       299 ~~~~~~~~~w~plLlLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~  378 (486)
                      .++..+..+|+|||||||||||++.|||.|+++||++|++||||||+||||+||+||||||||+|||||||+||++|+++
T Consensus       225 ~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs  304 (409)
T KOG2674|consen  225 LEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVS  304 (409)
T ss_pred             cccCCCCCCCcceEEEEEeeecccccChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecceEEEeCCccCccccccc
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCccccCccccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCC---CCcEEEecCCC
Q 011432          379 KDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNG---APLFTVTQTHK  445 (486)
Q Consensus       379 ~~~~~~~~~SyHc~~~rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~---~PLF~v~~~~p  445 (486)
                      . +...+.+||||+.++||++.+|||||||||||++++||++||.+++++...++.   +|||+..+.+.
T Consensus       305 ~-~~~~~~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~  373 (409)
T KOG2674|consen  305 K-AKDVPDETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHW  373 (409)
T ss_pred             c-cCCCCccccccCchhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccc
Confidence            3 233467899999999999999999999999999999999999999998766665   56666655554

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification Back     alignment and domain information
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2433 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4696 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
2d1i_A398 Structure Of Human Atg4b Length = 398 2e-46
2cy7_A396 The Crystal Structure Of Human Atg4b Length = 396 3e-46
2z0d_A357 The Crystal Structure Of Human Atg4b- Lc3(1-120) Co 2e-44
2zzp_A357 The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-1 2e-44
2p82_A355 Cysteine Protease Atg4a Length = 355 4e-44
>pdb|2D1I|A Chain A, Structure Of Human Atg4b Length = 398 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 159/330 (48%), Gaps = 25/330 (7%)
Query: 143 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 202
           D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct: 50  DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 109
Query: 203 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 262
              Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct: 110 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS- 168
Query: 263 LGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ 305
                  +A+++     V  +E        V C        D+ RHC+ F  G       
Sbjct: 169 -------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 221
Query: 306 ADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIY 365
           + W P+            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IY
Sbjct: 222 SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY 281
Query: 366 LDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARA 425
           LDPH  QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C + 
Sbjct: 282 LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQV 341
Query: 426 SKLAEESNGAPLFTVTQTHKKPVNHSDVLG 455
            KL+      P+F + +     +   DVL 
Sbjct: 342 KKLSLLGGALPMFELVEQQPSHLACPDVLN 371
>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b Length = 396 Back     alignment and structure
>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex Length = 357 Back     alignment and structure
>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124) Complex Length = 357 Back     alignment and structure
>pdb|2P82|A Chain A, Cysteine Protease Atg4a Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
2cy7_A396 Cysteine protease APG4B; papain-like fold, autopha 1e-109
2p82_A355 Cysteine protease ATG4A; autophagy, hydrolase, pro 1e-105
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Length = 396 Back     alignment and structure
 Score =  328 bits (841), Expect = e-109
 Identities = 117/390 (30%), Positives = 187/390 (47%), Gaps = 26/390 (6%)

Query: 106 ISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKIT 165
              ++  +W+LG  + I  ++            E   D +SR+  +YRK F  IG +  T
Sbjct: 22  FPETSEPVWILGRKYSIFTEKD-----------EILSDVASRLWFTYRKNFPAIGGTGPT 70

Query: 166 SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHN 225
           SD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH 
Sbjct: 71  SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQ 130

Query: 226 LLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIY---VVSGDEDGE 282
           + Q G   G + G W GP  + +  + LA      +     ++   +    +        
Sbjct: 131 IAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSV 190

Query: 283 RGGAPVVCIDDASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 336
                     D+ RHC+ F  G       + W P++LL+PL LGL  +N  Y+ TL+  F
Sbjct: 191 PCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHCF 250

Query: 337 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRH 396
             PQSLG++GGKP ++ Y +G   E  IYLDPH  QP +         D S +       
Sbjct: 251 MMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCR 310

Query: 397 IHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGE 456
           + +  +DPS+A+GF+C+ +DDF+D+C +  KL+      P+F + +     +   DVL  
Sbjct: 311 MSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNL 370

Query: 457 TGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 486
           +    + + L     ++      ++D+++L
Sbjct: 371 SLDSSDVERLERFFDSE------DEDFEIL 394
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
2cy7_A396 Cysteine protease APG4B; papain-like fold, autopha 100.0
2p82_A355 Cysteine protease ATG4A; autophagy, hydrolase, pro 100.0
3oqc_A481 UFSP2, UFM1-specific protease 2; DPH motif Cys pro 97.98
2z84_A218 UFSP1, UFM1-specific protease 1; alpha/beta, papai 97.84
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Back     alignment and structure
Probab=100.00  E-value=4e-113  Score=887.81  Aligned_cols=328  Identities=34%  Similarity=0.669  Sum_probs=282.9

Q ss_pred             CCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHH
Q 011432          102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV  181 (486)
Q Consensus       102 ~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLL  181 (486)
                      +..++|.+++||||||++|+..++           .++|++||+||||||||+||+||+++++|||+|||||||||||||
T Consensus        18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL   86 (396)
T 2cy7_A           18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF   86 (396)
T ss_dssp             CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred             ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence            567899999999999999998654           579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhc
Q 011432          182 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET  261 (486)
Q Consensus       182 AqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~  261 (486)
                      ||||++|||||+|||+..+..+++|.+||+||+|+|+|||||||||++|+++||+||+||||+++|++|++|++.     
T Consensus        87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~-----  161 (396)
T 2cy7_A           87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF-----  161 (396)
T ss_dssp             HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence            999999999999999877666778999999999999999999999999999999999999999999999999752     


Q ss_pred             cCCCCCCCeEEEEeeCCCCCCCCCCceEeccccccccccc--------------------c------CCCCCCccEEEEE
Q 011432          262 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF--------------------S------KGQADWTPILLLV  315 (486)
Q Consensus       262 ~~~~~~~~l~vyv~s~~~dge~g~~~vv~~dd~~~~c~~~--------------------~------~~~~~w~plLlLI  315 (486)
                         ..+..++|||++++         +|+++|+.+.|...                    .      .....|+|+||||
T Consensus       162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli  229 (396)
T 2cy7_A          162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI  229 (396)
T ss_dssp             ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred             ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence               23346899998753         67778877665421                    0      0124699999999


Q ss_pred             eeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCc-c
Q 011432          316 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I  394 (486)
Q Consensus       316 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~~~~~~~~~~SyHc~~-~  394 (486)
                      |+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++...... .+.+||||.. +
T Consensus       230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~~~~  308 (396)
T 2cy7_A          230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQHPP  308 (396)
T ss_dssp             EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCCSCC
T ss_pred             EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeecCcc
Confidence            9999999999999999999999999999999999999999999999999999999999998654332 2457999987 5


Q ss_pred             ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCcCCCCC
Q 011432          395 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETG  458 (486)
Q Consensus       395 rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~~PLF~v~~~~p~~~~~~d~~~~~~  458 (486)
                      ++|++++|||||+|||||+|++||++||++++++....+++|||+|++++|++..++|++....
T Consensus       309 ~~m~~~~mDPS~~lGFyc~~~~Df~d~~~~~~~~~~~~~~~plF~v~~~~p~~~~~~~~~~~~~  372 (396)
T 2cy7_A          309 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSL  372 (396)
T ss_dssp             EEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHHHC----CCSEEESCCC------CCCCCCC
T ss_pred             cccchhhcCCceEEEEEECCHHHHHHHHHHHHHHhccCCCCceEEeeccCCCcCCCCccccCCC
Confidence            8999999999999999999999999999999999877778999999999999988888766544
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Back     alignment and structure
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus} Back     alignment and structure
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 486
d2z0da1350 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human 1e-128
d2p82a1334 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human 1e-121
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  374 bits (962), Expect = e-128
 Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 26/349 (7%)

Query: 106 ISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKIT 165
              ++  +W+LG  + I  ++            E   D +SR+  +YRK F  IG +  T
Sbjct: 15  FPETSEPVWILGRKYSIFTEKD-----------EILSDVASRLWFTYRKNFPAIGGTGPT 63

Query: 166 SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHN 225
           SD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH 
Sbjct: 64  SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQ 123

Query: 226 LLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGG 285
           + Q G   G + G W GP  + +  + LA      +     ++   + +   +E      
Sbjct: 124 IAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM---EEIRRLCR 180

Query: 286 APVVCID------DASRHCSVF------SKGQADWTPILLLVPLVLGLEKVNPRYIPTLR 333
             V C        D+ RHC+ F      +   + W P++LL+PL LGL  +N  Y+ TL+
Sbjct: 181 TSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLK 240

Query: 334 LTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV 393
             F  PQSLG++GGKP ++ Y +G   E  IYLDP   QP +         D S +    
Sbjct: 241 HCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCFIPDESFHCQHP 300

Query: 394 IRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQ 442
              + +  +DPS+A+GF+C+ +DDF+D+C +  KL+      P+F + +
Sbjct: 301 PCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE 349
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Length = 334 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
d2z0da1350 Cysteine protease ATG4B {Human (Homo sapiens) [Tax 100.0
d2p82a1334 Cysteine protease ATG4A {Human (Homo sapiens) [Tax 100.0
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-110  Score=852.08  Aligned_cols=313  Identities=34%  Similarity=0.692  Sum_probs=275.6

Q ss_pred             CCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHH
Q 011432          102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV  181 (486)
Q Consensus       102 ~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLL  181 (486)
                      +..+++..++||||||++|+..++           .++|++||+||||||||+|||||+++++|||+|||||||||||||
T Consensus        11 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~s~iwfTYR~~F~~i~~s~~TSD~GWGCMlRsgQMlL   79 (350)
T d2z0da1          11 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF   79 (350)
T ss_dssp             GGCCCCSSCCCEEETTEEECTTTC-----------HHHHHHHHHHSCCCCEEESCCCGGGTSCSBCTTTCHHHHHHHHHH
T ss_pred             chhhCCCCCCCEEEeceeecCCcC-----------HHHHHHHhhheEEEEccCCCcCCCCCCCcCCCchhHHHHHHHHHH
Confidence            457888999999999999998764           579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhc
Q 011432          182 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET  261 (486)
Q Consensus       182 AqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~  261 (486)
                      ||||++|||||+|||......+++|.+||+||.|.|+|||||||||++|.++||+||+||||+++|++|++|++..    
T Consensus        80 A~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~~a~~ik~L~~~~----  155 (350)
T d2z0da1          80 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD----  155 (350)
T ss_dssp             HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHhcCCcccccccccCcHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHhhc----
Confidence            9999999999999999877777889999999999999999999999999999999999999999999999998742    


Q ss_pred             cCCCCCCCeEEEEeeCCCCCCCCCCceEeccccccccccc--------------------------cCCCCCCccEEEEE
Q 011432          262 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF--------------------------SKGQADWTPILLLV  315 (486)
Q Consensus       262 ~~~~~~~~l~vyv~s~~~dge~g~~~vv~~dd~~~~c~~~--------------------------~~~~~~w~plLlLI  315 (486)
                          +...++|||++++         ++|+||+.++|...                          .....+|+||||||
T Consensus       156 ----~~~~l~v~va~d~---------~v~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llli  222 (350)
T d2z0da1         156 ----TWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI  222 (350)
T ss_dssp             ----TTTCCEEEECCTT---------EEEHHHHHHHHTCC-------------------------------CCCCEEEEE
T ss_pred             ----cccCceEEEecCC---------cEehHHHHHHhcccccccccccccccccccccccccchhhcccccCCcceEEEE
Confidence                3346899998753         68888887766421                          01235799999999


Q ss_pred             eeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCc-c
Q 011432          316 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I  394 (486)
Q Consensus       316 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~~~~~~~~~~SyHc~~-~  394 (486)
                      |+|||+|+|||+|+++||++|++|||||||||||++|+||||+|+|+|||||||+||+|++..+... ....||||.+ +
T Consensus       223 plRLG~d~iN~~Y~~~Lk~~~~~pqsvGIiGGrP~~a~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~S~hc~~~~  301 (350)
T d2z0da1         223 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCF-IPDESFHCQHPP  301 (350)
T ss_dssp             EEECSSSSCCHHHHHHHHHTTSSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCC------CCCGGGSCCSSC
T ss_pred             eeecCCCcCCHHHHHHHHHHhcchhhceEecCCCCCceEEEEEcCCceEeecccccccccccccccc-CCccceecCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999998754433 2457999977 5


Q ss_pred             ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecC
Q 011432          395 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQT  443 (486)
Q Consensus       395 rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~~PLF~v~~~  443 (486)
                      ++|++++|||||+|||||+|++||++||++++++....+++|||||++.
T Consensus       302 ~~~~~~~lDPSm~lGF~~~~~~d~~~~~~~i~~l~~~~~~~plFev~e~  350 (350)
T d2z0da1         302 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ  350 (350)
T ss_dssp             EEEEGGGCCSEEEEEEEESSHHHHHHHHHHHHHC-----CCCSSEEECC
T ss_pred             CcCChhhcCCCeEEEEEECCHHHHHHHHHHHHHHhcccCCCCcEEEeeC
Confidence            6899999999999999999999999999999998888889999999974
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure