Citrus Sinensis ID: 011470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | no | 1.0 | 0.995 | 0.809 | 0.0 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 1.0 | 0.993 | 0.793 | 0.0 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.917 | 0.961 | 0.454 | 1e-112 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.948 | 0.954 | 0.433 | 1e-111 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.868 | 0.895 | 0.467 | 1e-107 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.882 | 0.862 | 0.435 | 1e-103 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.909 | 0.938 | 0.445 | 1e-102 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.878 | 0.922 | 0.450 | 4e-97 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.894 | 0.923 | 0.423 | 4e-95 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.905 | 0.918 | 0.419 | 1e-94 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/487 (80%), Positives = 445/487 (91%), Gaps = 2/487 (0%)
Query: 1 MSFRDESDD--QNLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 58
MSFRD++++ +LR+PF+HTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNIIGWL ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 121 AAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFVPWRILAVLGILPCT+LI GLFFIPESPRWLAKMGMT++FE SL
Sbjct: 181 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
QVLRGF+TDI++EVNEIKRSVASS++R T+RF +LK+RRYYFPL VGIGLL+LQQL GIN
Sbjct: 241 QVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSSTIFESAG+TSS+ AT G+GA+QV+AT ++TWL DKAGRR LL ISSVGMT+S+
Sbjct: 301 GVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
+IVA +F++K FVS DS YS L I SV+GVVAMVV FSLGMGPIPW+IMSEILP+NIKG
Sbjct: 361 VIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKG 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGS+ATLANW WLITMTANLLL WS GGTF +Y +V AFTV FV++WVPETKGKTLE
Sbjct: 421 LAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLE 480
Query: 479 EIQRSLR 485
E+Q R
Sbjct: 481 ELQSLFR 487
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/488 (79%), Positives = 446/488 (91%), Gaps = 3/488 (0%)
Query: 1 MSFRDESDDQ---NLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGP 57
MSFRD++ ++ +LR+PFLHTGSWYRMGSRQSSM+ SSQVIRDSSISVLACVLIVALGP
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESSQVIRDSSISVLACVLIVALGP 60
Query: 58 IQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM 117
IQFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EY+GRKGSLM
Sbjct: 61 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSLM 120
Query: 118 IAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 177
IAAIPNIIGWL+ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQ +RGALGSVN
Sbjct: 121 IAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVN 180
Query: 178 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEAS 237
QLSVTIGIMLAYLLGLFVPWRILAVLG+LPCT+LI GLFFIPESPRWLAKMG+T+DFE S
Sbjct: 181 QLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFETS 240
Query: 238 LQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGI 297
LQVLRGF+TDI++EVNEIKRSVASSS+R+ +RF +LK+RRYYFPL VGIGLL LQQL GI
Sbjct: 241 LQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGGI 300
Query: 298 NGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357
NGV+FYSSTIFESAG+TSS+VAT G+G +QV+ATG+ TWL DKAGRR LL+ISS+GMT+S
Sbjct: 301 NGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTIS 360
Query: 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIK 417
++IVAV+F++K FVS DS+ Y+IL + SV+GVVAMV++ SLGMGPIPW+IMSEILP+NIK
Sbjct: 361 LVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNIK 420
Query: 418 GLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTL 477
GLAGS+ATL NW WL+TMTAN+LL WS GGTF +Y +V FTV FVS+WVPETKGKTL
Sbjct: 421 GLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKTL 480
Query: 478 EEIQRSLR 485
EEIQ R
Sbjct: 481 EEIQALFR 488
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 295/453 (65%), Gaps = 8/453 (1%)
Query: 29 QSSMMGSSQVIRDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLF 88
+M GS D V + G FG GYSSP Q AI DL LT++EFSLF
Sbjct: 14 DKNMAGSKP---DQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLF 70
Query: 89 ASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGF 148
SL GAM+GAITSG I++ +GRKG++ +++ ++GWLAI FA+ L +GRL G+
Sbjct: 71 GSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGY 130
Query: 149 GVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPC 208
G+G SY VP++IAEIAP+ RGAL ++NQ+ + G+ +++++G V WR+LA++GI+PC
Sbjct: 131 GMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPC 190
Query: 209 TILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI 268
GLFFIPESPRWLAK+G +FEA+L+ LRG DIS E EI+ + + R
Sbjct: 191 AASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKA 250
Query: 269 RFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQV 328
+ +L QRRY + + GL++ QQ GING+ FY+S+IFE AG + + + LQV
Sbjct: 251 KMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVLQV 309
Query: 329 IATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIG 388
+ T + + D+AGR+ LL++S+ G+ + LI AVSF++K V D + + + + +V+G
Sbjct: 310 VITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK--VHDMA--HEAVPVLAVVG 365
Query: 389 VVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGG 448
++ + +FS GMG +PWV+MSEI PINIKG+AG +ATL NW W ++ T N L++WS
Sbjct: 366 IMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSY 425
Query: 449 GTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQ 481
GTF IY ++A + FV VPETKGKTLE+IQ
Sbjct: 426 GTFLIYAAINALAIVFVIAIVPETKGKTLEQIQ 458
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/477 (43%), Positives = 303/477 (63%), Gaps = 17/477 (3%)
Query: 10 QNLRKPFL-HTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQFGFTCGYSS 68
++L KPFL H + +S +M VL + G +FG GYS+
Sbjct: 19 EDLGKPFLTHEDDEKESENNESYLM------------VLFSTFVAVCGSFEFGSCVGYSA 66
Query: 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWL 128
PTQ++I +DL L+L+EFS+F S+ +GAM+GA+ SG+IS++ GRKG++ +A I GWL
Sbjct: 67 PTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWL 126
Query: 129 AISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLA 188
A+ F + + L +GR G+G+G+ SY VPVYIAEI+P+NLRG L ++NQL + IG ++
Sbjct: 127 AVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVS 186
Query: 189 YLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDI 248
+L+G + W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG D DI
Sbjct: 187 FLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGKDADI 246
Query: 249 SIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF 308
+ E + I+ S+ + R +L ++Y + +G+ L++ QQ GING+ FY+S F
Sbjct: 247 TNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYASETF 306
Query: 309 ESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVK 368
AG TS + T+ + +QV T + T L DK+GRR L++IS+ G+ + ++ SF +K
Sbjct: 307 VKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTSFLLK 366
Query: 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLAN 428
G S + +V GV+ V FS+GMGP+PWVIMSEI PIN+KG+AGS+ L N
Sbjct: 367 G----QSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVN 422
Query: 429 WLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQRSLR 485
W W ++ T N L++WS GTF +Y+ +A T+ FV+ VPETKGKTLEEIQ +R
Sbjct: 423 WSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGKTLEEIQACIR 479
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/432 (46%), Positives = 290/432 (67%), Gaps = 11/432 (2%)
Query: 56 GPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGS 115
G FG GYSSP Q+ +T++L L+++E+SLF S+ +GAM+GA SG+I++ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 116 LMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGS 175
+ + + I+GWLAI ++ + +L +GR L G+G+G+ S+ VPVYIAEI P+ LRG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 176 VNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFE 235
V+QL + +G+ + YLLG F+ WRILA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 236 ASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295
+LQ LRG DIS E NEIK + + +L Q +Y L VG+GL++LQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 296 GINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMT 355
G+NG+ FY+S+IFESAG+ SS + + + +Q+ T + L DK+GRR LL+IS+ G
Sbjct: 282 GVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 356 VSILIVAVSF---FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEIL 412
+ +V +SF FVK D S ++ GV+ +FSLGMG IPWVIMSEI
Sbjct: 341 IGCFLVGLSFSLQFVKQLSGDAS-------YLALTGVLVYTGSFSLGMGGIPWVIMSEIF 393
Query: 413 PINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPET 472
PI+IKG AGS+ T+ +W+ W+I+ T N L+NW+ GTF ++ V TV FV+ VPET
Sbjct: 394 PIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPET 453
Query: 473 KGKTLEEIQRSL 484
KG+TLEEIQ S+
Sbjct: 454 KGRTLEEIQYSI 465
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 287/441 (65%), Gaps = 13/441 (2%)
Query: 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSG 104
SV + G G G+SS Q IT+DL L+++E+S+F S+ +G ++GA+ SG
Sbjct: 57 SVFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSG 116
Query: 105 QISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEI 164
++++ +GRK +++ I GWL ++ A+ + +L GRLL G GVGI SY +PVYIAEI
Sbjct: 117 KVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEI 176
Query: 165 APQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRW 224
AP+++RG+ NQL GI L +++G F+PWR+L V+G++PC + LFFIPESPRW
Sbjct: 177 APKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRW 236
Query: 225 LAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTV 284
LAK+G ++ +SLQ LRG D DIS E N I+ ++ + + SEL QRRY +PL +
Sbjct: 237 LAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLII 296
Query: 285 GIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRR 344
G+GL+ LQQL G +GV +Y+S++F G S+ + T + + V + T L DK GRR
Sbjct: 297 GVGLMFLQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRR 355
Query: 345 ALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSIL----DIFSVIGVVAMVVTFSLGM 400
LL+ S M +S L+++VS+ GF S + IL IF+ IGV+ +V+F++GM
Sbjct: 356 TLLMASCSAMGLSALLLSVSY---GFQS-----FGILPELTPIFTCIGVLGHIVSFAMGM 407
Query: 401 GPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAF 460
G +PW+IM+EI P+N+K AG++ T+ NWL W+IT T N +L W+ G F I+++VSA
Sbjct: 408 GGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSAS 467
Query: 461 TVAFVSIWVPETKGKTLEEIQ 481
++ F+ VPETKG++LEEIQ
Sbjct: 468 SIVFIYFLVPETKGRSLEEIQ 488
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/447 (44%), Positives = 284/447 (63%), Gaps = 6/447 (1%)
Query: 36 SQVIRDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVG 95
S V ++S V +I G +FG GYS+PTQ I +L L+ S+FS+F S+ N+G
Sbjct: 25 SDVSEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMG 84
Query: 96 AMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISY 155
A++GAITSG+IS++IGRKG++ ++++ + IGWL I A+ L GR L G+G G +S+
Sbjct: 85 AVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSF 144
Query: 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGL 215
VPV+IAEI+P+ LRGAL ++NQL + IG+ +L+G V WR LA+ G+ PC +L G
Sbjct: 145 VVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGT 204
Query: 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQ 275
+FIPESPRWL +G DFE +LQ LRG +I+ E EI+ +AS + +L
Sbjct: 205 WFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLID 264
Query: 276 RRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGV-T 334
++ + VG+GL+ QQ GINGV+FY+ IF SAG S + ++ QV+ T +
Sbjct: 265 KKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGA 323
Query: 335 TWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVV 394
T L D+ GRR LL+ S+VGM + L++ SF +K I+ +V GV+ +
Sbjct: 324 TLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKA----HGLALDIIPALAVSGVLVYIG 379
Query: 395 TFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIY 454
+FS+GMG IPWVIMSEI PIN+KG AG + T+ NWL+ WL++ T N L+ WS GTF +Y
Sbjct: 380 SFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVY 439
Query: 455 TVVSAFTVAFVSIWVPETKGKTLEEIQ 481
V + F++ VPETKG+TLEEIQ
Sbjct: 440 GGVCVLAIIFIAKLVPETKGRTLEEIQ 466
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 197/437 (45%), Positives = 270/437 (61%), Gaps = 11/437 (2%)
Query: 51 LIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI 110
I+ FG GY++ T ++I DL+L+L++FSLF SLS G M+GAI S + +
Sbjct: 31 FIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAF 90
Query: 111 GRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLR 170
G K +L +A + I GWLAIS A++ +L MGR L G GVG+ISY VPVYIAEI P+++R
Sbjct: 91 GHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVR 150
Query: 171 GALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGM 230
GA NQL G+ + Y G F+ WR LA++G +PC I + GLFFIPESPRWLAK G
Sbjct: 151 GAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGR 210
Query: 231 TEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLI 290
++ E LQ LRG DI E EIK SV +S + + I L ++RY LT+GIGL++
Sbjct: 211 DKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLML 270
Query: 291 LQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTW---LADKAGRRALL 347
LQQL G G+ Y ST+F+ AG A +G+ L +I + L D+ GRR LL
Sbjct: 271 LQQLCGTAGISSYGSTLFKLAGFP----ARIGMMVLSLIVVPKSLMGLILVDRWGRRPLL 326
Query: 348 IISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVI 407
+ S++G+ +S + +AV+F VK D I IF IG+++ + F++GMG +PW+I
Sbjct: 327 MTSALGLCLSCITLAVAFGVK----DVPGIGKITPIFCFIGILSFTMMFAIGMGALPWII 382
Query: 408 MSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSI 467
MSEI P++IK LAGS+ T+ANW T W+ N +L WS GTF I ++ T+ F
Sbjct: 383 MSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAIICGATIVFTWC 442
Query: 468 WVPETKGKTLEEIQRSL 484
VPET+ TLEEIQ S
Sbjct: 443 LVPETRRLTLEEIQLSF 459
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 278/439 (63%), Gaps = 5/439 (1%)
Query: 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQ 105
VL + G FG GYSS QT I DL L+++++S+F S+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 106 ISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIA 165
+++ +GRKG++ A I I GW+A++ A++S +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 166 PQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWL 225
P+++RGA NQL + G+ L Y++G FV WR LA++G++PC + + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 226 AKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285
K G ++ ASLQ LRG D DIS E N IK ++ R +L QRRY + +G
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRA 345
+GL++LQQLSG +G+++Y ++F+ G SS + ++ L + + + L +K GRR
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLILVEKMGRRP 330
Query: 346 LLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPW 405
LL+ S+ GM L+++ SF + + D + IF+ IGVV + +F++GMG +PW
Sbjct: 331 LLLASTGGMCFFSLLLSFSFCFRSYGMLD----ELTPIFTCIGVVGFISSFAVGMGGLPW 386
Query: 406 VIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFV 465
+IMSEI P+N+K AG++ TLANW W++ N +L W+ GTF I+ + + F+
Sbjct: 387 IIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFI 446
Query: 466 SIWVPETKGKTLEEIQRSL 484
VPETKG+TLE+IQ SL
Sbjct: 447 YAMVPETKGRTLEDIQASL 465
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/448 (41%), Positives = 282/448 (62%), Gaps = 9/448 (2%)
Query: 41 DSSISVLACVL----IVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGA 96
DS + ACV+ I G FG + GY+S + I +DL+L++++FS FASLS +GA
Sbjct: 26 DSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGA 85
Query: 97 MVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYT 156
+GA+ SG+++ +GR+ ++ ++ + IIGW +I+FA++ +L GR+ G G+G+ISY
Sbjct: 86 AIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYV 145
Query: 157 VPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLF 216
VPVYIAEI+P+++RG NQL G+ + Y G F+ WRILA+LG LPC I + GLF
Sbjct: 146 VPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLF 205
Query: 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276
F+PESPRWLAK+G ++ E SL LRG + DIS E ++I+ + F +L QR
Sbjct: 206 FVPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQR 265
Query: 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTW 336
+Y + L VGIGL+++QQ SG + V+ Y+STI AG + + +TL LG + +
Sbjct: 266 KYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVI 324
Query: 337 LADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTF 396
L DK GRR LL+ S GM ++ +++ V+F ++ + +F+ I V + T+
Sbjct: 325 LVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKM----QLLPELTPVFTFICVTLYIGTY 380
Query: 397 SLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTV 456
++G+G +PWVIMSEI P+NIK AGS+ TL +W + ++T N LL WS GTF ++
Sbjct: 381 AIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGA 440
Query: 457 VSAFTVAFVSIWVPETKGKTLEEIQRSL 484
V + F+ + VPETKG +LEEIQ SL
Sbjct: 441 VGGLALLFIWLLVPETKGLSLEEIQASL 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 1.0 | 0.995 | 0.835 | 0.0 | |
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.997 | 0.800 | 0.0 | |
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.997 | 0.995 | 0.8 | 0.0 | |
| 297842269 | 487 | hypothetical protein ARALYDRAFT_895389 [ | 1.0 | 0.995 | 0.811 | 0.0 | |
| 449469977 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.997 | 0.823 | 0.0 | |
| 15222158 | 487 | sugar transporter ERD6-like 6 [Arabidops | 1.0 | 0.995 | 0.809 | 0.0 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 1.0 | 0.995 | 0.841 | 0.0 | |
| 449460263 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 1.0 | 0.997 | 0.808 | 0.0 | |
| 15223557 | 488 | sugar transporter ERD6-like 4 [Arabidops | 1.0 | 0.993 | 0.793 | 0.0 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.993 | 0.995 | 0.780 | 0.0 |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/487 (83%), Positives = 450/487 (92%), Gaps = 2/487 (0%)
Query: 1 MSFRDESDDQ--NLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 58
MSFRD+S+D +LRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISV+ACVLIVALGPI
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVVACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFTCGYSSPTQTAIT DL+L++SE+SLF SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNI+GWLAISFA ++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ
Sbjct: 121 AAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFV WRILAVLGILPCT+LI GLFFIPESPRWLAKMGMTEDFEASL
Sbjct: 181 LSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEASL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
QVLRGFDTDIS+EVNEIKRSVAS+SRR+TIRF ELK+RRY+ PL +GIGLL+LQQLSGIN
Sbjct: 241 QVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSSTIFESAG+ +S+VAT GLGA+QVIATGVTT + DKAGRR LLIISS M +S+
Sbjct: 301 GVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTSIVDKAGRRLLLIISSSAMAISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
L+VAVSFFV+ FVSD S YSIL I S++GV+ MVV FSLGMGPIPW+IMSEILP+NIKG
Sbjct: 361 LLVAVSFFVQDFVSDQSHLYSILGILSIVGVLGMVVGFSLGMGPIPWIIMSEILPVNIKG 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGSVATLANWL +++TMTANLLL+WS GGTF IY +V A T+AFV+IWVPETKG+TLE
Sbjct: 421 LAGSVATLANWLFSFVVTMTANLLLSWSSGGTFTIYLIVCALTIAFVAIWVPETKGRTLE 480
Query: 479 EIQRSLR 485
EIQ S R
Sbjct: 481 EIQSSFR 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/486 (80%), Positives = 453/486 (93%), Gaps = 1/486 (0%)
Query: 1 MSFRDESDDQNLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGPIQ 59
MSFR+E D ++LRKPFLHTGSWYRMGSRQSS+MGSS Q+IRD+S+SVL CVLIVALGPIQ
Sbjct: 1 MSFREEEDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPIQ 60
Query: 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119
FGFTCGYSSPTQ+ I DL L+LSEFS+F SLSNVGAMVGAI SGQI+EYIGRKGSLMIA
Sbjct: 61 FGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIA 120
Query: 120 AIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL 179
+IPNIIGWLAISFA++SSFLYMGRLLEGFGVG+ISYTVPVYIAEI+PQN+RG LGSVNQL
Sbjct: 121 SIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQL 180
Query: 180 SVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQ 239
SVT+GI+LAY+LGLFV WR+LAVLGILPCTILI GLFFIPESPRWLAKMGMTEDFEASLQ
Sbjct: 181 SVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQ 240
Query: 240 VLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGING 299
VLRGFDTDIS+EV EIKRSVAS+ +RTTI+FS+LK++RY+FPL VGIGLL+LQQLSGING
Sbjct: 241 VLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGING 300
Query: 300 VVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359
V+FYSS IFE+AGI+SSD+AT+GLG +QVIATGVTTWL DKAGRR LLI+SS GMT+S+L
Sbjct: 301 VLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSLL 360
Query: 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419
+V+V+F++K +S+DS YSIL I S++G+VA+V+TFSLG+G IPWVIMSEILP++IKGL
Sbjct: 361 LVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEILPVSIKGL 420
Query: 420 AGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479
AGS+ATLANWLT W +TMTANLLL+WS GGTFAIYT+++AFT+ FV++WVPETKG+TLEE
Sbjct: 421 AGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTLMTAFTIVFVTLWVPETKGRTLEE 480
Query: 480 IQRSLR 485
IQRS R
Sbjct: 481 IQRSFR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/485 (80%), Positives = 452/485 (93%), Gaps = 1/485 (0%)
Query: 1 MSFRDESDDQNLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGPIQ 59
MSFR+E D ++LRKPFLHTGSWYRMGSRQSS+MGSS Q+IRD+S+SVL CVLIVALGPIQ
Sbjct: 1 MSFREEEDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPIQ 60
Query: 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119
FGFTCGYSSPTQ+ I DL L+LSEFS+F SLSNVGAMVGAI SGQI+EYIGRKGSLMIA
Sbjct: 61 FGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIA 120
Query: 120 AIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL 179
+IPNIIGWLAISFA++SSFLYMGRLLEGFGVG+ISYTVPVYIAEI+PQN+RG LGSVNQL
Sbjct: 121 SIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQL 180
Query: 180 SVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQ 239
SVT+GI+LAY+LGLFV WR+LAVLGILPCTILI GLFFIPESPRWLAKMGMTEDFEASLQ
Sbjct: 181 SVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQ 240
Query: 240 VLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGING 299
VLRGFDTDIS+EV EIKRSVAS+ +RTTI+FS+LK++RY+FPL VGIGLL+LQQLSGING
Sbjct: 241 VLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGING 300
Query: 300 VVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359
V+FYSS IFE+AGI+SSD+AT+GLG +QVIATGVTTWL DKAGRR LLI+SS GMT+S+L
Sbjct: 301 VLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSLL 360
Query: 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419
+V+V+F++K +S+DS YSIL I S++G+VA+V+TFSLG+G IPWVIMSEILP++IKGL
Sbjct: 361 LVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEILPVSIKGL 420
Query: 420 AGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479
AGS+ATLANWLT W +TMTANLLL+WS GGTFAIYT+++AFT+ FV++WVPETKG+TLEE
Sbjct: 421 AGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTLMTAFTIVFVTLWVPETKGRTLEE 480
Query: 480 IQRSL 484
IQRS
Sbjct: 481 IQRSF 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842269|ref|XP_002889016.1| hypothetical protein ARALYDRAFT_895389 [Arabidopsis lyrata subsp. lyrata] gi|297334857|gb|EFH65275.1| hypothetical protein ARALYDRAFT_895389 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/487 (81%), Positives = 448/487 (91%), Gaps = 2/487 (0%)
Query: 1 MSFRDESDD--QNLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 58
MSFRD++++ +LR+PF+HTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI
Sbjct: 1 MSFRDDNEEGRNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNIIGWL ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 121 AAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFVPWRILAVLGILPCT+LI GLFFIPESPRWLAKMGMT+DFE SL
Sbjct: 181 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTVLIPGLFFIPESPRWLAKMGMTDDFETSL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
QVLRGF+TDI++EVNEIKRSVASS++R T+RF +LK+RRYYFPLTVGIGLL+LQQL GIN
Sbjct: 241 QVLRGFETDITVEVNEIKRSVASSTKRNTVRFEDLKRRRYYFPLTVGIGLLVLQQLGGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSSTIFESAG+TSS+ AT G+GA+QV+AT ++TWL DKAGRR LL ISSVGMT+S+
Sbjct: 301 GVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
+IVA +F++KGFVS DS Y+ L I SV+GVVAMVV+FSLGMGPIPW+IMSEILP+NIKG
Sbjct: 361 VIVAAAFYLKGFVSPDSDMYNWLSILSVVGVVAMVVSFSLGMGPIPWLIMSEILPVNIKG 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGS+ATLANW WLITMTANLLL WS GGTF +Y +V AFTV FV++WVPETKG+TLE
Sbjct: 421 LAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGRTLE 480
Query: 479 EIQRSLR 485
E+Q R
Sbjct: 481 ELQALFR 487
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469977|ref|XP_004152695.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449516725|ref|XP_004165397.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/486 (82%), Positives = 452/486 (93%), Gaps = 1/486 (0%)
Query: 1 MSFRDESDD-QNLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQ 59
MSFRD+S+D +++RKPFLHTGSWYRMGSRQSS+MGSSQ IRD+SISV+ACVLIVALGPIQ
Sbjct: 1 MSFRDDSEDGRDIRKPFLHTGSWYRMGSRQSSLMGSSQAIRDNSISVVACVLIVALGPIQ 60
Query: 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119
FGFT GYSSPTQ AITRDL LT+SE+SLF SLSNVGAMVGAITSGQ++EYIGRKG+LMIA
Sbjct: 61 FGFTGGYSSPTQLAITRDLGLTVSEYSLFGSLSNVGAMVGAITSGQLAEYIGRKGALMIA 120
Query: 120 AIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL 179
AIPNIIGWLAISFA++SSFLYMGRLLEGFGVGIISYTVPVYIAEI+PQNLRG+LGSVNQL
Sbjct: 121 AIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEISPQNLRGSLGSVNQL 180
Query: 180 SVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQ 239
SVT+GIML+YLLGLFVPWRILAVLGILPCTILI GLFFIPESPRWLAKMGMTE+FE SLQ
Sbjct: 181 SVTLGIMLSYLLGLFVPWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEEFETSLQ 240
Query: 240 VLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGING 299
VLRGFDTDI++EVNEIKRSVAS++RR TIRF++LKQRRY+ PL++GIGLLILQQLSGING
Sbjct: 241 VLRGFDTDITVEVNEIKRSVASANRRRTIRFADLKQRRYWLPLSIGIGLLILQQLSGING 300
Query: 300 VVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359
V+FYSSTIF SAGITSS+ AT GLGA+QV+AT VTTW+ D+AGRR LLIISSVGMT+S+L
Sbjct: 301 VLFYSSTIFASAGITSSNAATFGLGAIQVVATAVTTWVIDRAGRRLLLIISSVGMTLSLL 360
Query: 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419
IVAV+FF+K VS+DSS YSI I SV+GVVAMVVTFSLG+G IPW+IMSEILP+NIKGL
Sbjct: 361 IVAVAFFLKDAVSEDSSLYSIAGIVSVVGVVAMVVTFSLGVGAIPWIIMSEILPVNIKGL 420
Query: 420 AGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479
AGS+ATLANW + W +TM+ANLLL WS GGTF IY VV+AF V FV++WVPETKG+TLEE
Sbjct: 421 AGSIATLANWFSAWAVTMSANLLLQWSSGGTFTIYLVVTAFMVLFVTLWVPETKGRTLEE 480
Query: 480 IQRSLR 485
IQ S R
Sbjct: 481 IQFSFR 486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222158|ref|NP_177658.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] gi|75334257|sp|Q9FRL3.1|ERDL6_ARATH RecName: Full=Sugar transporter ERD6-like 6 gi|10092276|gb|AAG12689.1|AC025814_13 integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gi|15724240|gb|AAL06513.1|AF412060_1 At1g75220/F22H5_6 [Arabidopsis thaliana] gi|21700861|gb|AAM70554.1| At1g75220/F22H5_6 [Arabidopsis thaliana] gi|332197568|gb|AEE35689.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/487 (80%), Positives = 445/487 (91%), Gaps = 2/487 (0%)
Query: 1 MSFRDESDD--QNLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 58
MSFRD++++ +LR+PF+HTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNIIGWL ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 121 AAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFVPWRILAVLGILPCT+LI GLFFIPESPRWLAKMGMT++FE SL
Sbjct: 181 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
QVLRGF+TDI++EVNEIKRSVASS++R T+RF +LK+RRYYFPL VGIGLL+LQQL GIN
Sbjct: 241 QVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSSTIFESAG+TSS+ AT G+GA+QV+AT ++TWL DKAGRR LL ISSVGMT+S+
Sbjct: 301 GVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
+IVA +F++K FVS DS YS L I SV+GVVAMVV FSLGMGPIPW+IMSEILP+NIKG
Sbjct: 361 VIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKG 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGS+ATLANW WLITMTANLLL WS GGTF +Y +V AFTV FV++WVPETKGKTLE
Sbjct: 421 LAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLE 480
Query: 479 EIQRSLR 485
E+Q R
Sbjct: 481 ELQSLFR 487
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/487 (84%), Positives = 452/487 (92%), Gaps = 2/487 (0%)
Query: 1 MSFRDESDDQ--NLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 58
MSFRD+S+D ++RKPFLHTGSWYRM SRQSSMMGSSQ IRD+SISV+ACVLIVALGPI
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSSQAIRDNSISVVACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFT GYSSPTQ +I DL LT+SEFSLF SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNIIGWLAISFA++SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFV WRILAVLGILPCTILI GLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 181 LSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESSL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
QVLRGFDTDIS+EV+EIKR++AS+SRRTTIRF+ELK++RY+FPLTVGIGLL+LQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSS IF +AGI SS+VAT+G+GA+QVIATGVTTWL D+ GRR LLI+S+ GMT+S+
Sbjct: 301 GVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
LIVAVSFFVKGFV +DSS YSIL I SV+GVVAMVVTFSLGMG IPWVIMSEILP+NIK
Sbjct: 361 LIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTFSLGMGAIPWVIMSEILPVNIKS 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGSVATLANWL +L+TMTANLLL+WS GGTF IY+VVSAF V FVS+WVPETKG+TLE
Sbjct: 421 LAGSVATLANWLISFLVTMTANLLLDWSTGGTFIIYSVVSAFAVVFVSMWVPETKGRTLE 480
Query: 479 EIQRSLR 485
EIQ S R
Sbjct: 481 EIQSSFR 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460263|ref|XP_004147865.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449476810|ref|XP_004154840.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/486 (80%), Positives = 445/486 (91%), Gaps = 1/486 (0%)
Query: 1 MSFRDESDD-QNLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQ 59
MSFRD++++ ++LRKPFLHTGSWYRMGSRQSSMMGSSQ IRDSSISVLACVLIVALGPIQ
Sbjct: 1 MSFRDDNEEGRDLRKPFLHTGSWYRMGSRQSSMMGSSQGIRDSSISVLACVLIVALGPIQ 60
Query: 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119
FGFTCGYSSPTQ++I +DL LT+ E+S+F SLSNVGAMVGAI+SGQI+EYIGRKGSLMIA
Sbjct: 61 FGFTCGYSSPTQSSIMKDLRLTVPEYSVFGSLSNVGAMVGAISSGQIAEYIGRKGSLMIA 120
Query: 120 AIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL 179
AIPNIIGWLAISFA++SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRG LGSVNQL
Sbjct: 121 AIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQL 180
Query: 180 SVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQ 239
SVTIGI+LAYLLGLFVPWR+LAVLGILPCT+LI GLFFIPESPRWLAKMGMTE+FE SLQ
Sbjct: 181 SVTIGILLAYLLGLFVPWRLLAVLGILPCTVLIPGLFFIPESPRWLAKMGMTEEFETSLQ 240
Query: 240 VLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGING 299
VLRGFD DISIEVNEIKRSVA++++RTTIRF+ELK+RRY+FPL +GIGLL+LQQL+GIN
Sbjct: 241 VLRGFDADISIEVNEIKRSVATTTKRTTIRFAELKRRRYWFPLMIGIGLLMLQQLTGINA 300
Query: 300 VVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359
V+FYSSTIF +AG+ SS+VAT GLGA+QV+AT VTTWL D+AGRR LLI+S+ GMT S+L
Sbjct: 301 VLFYSSTIFAAAGVESSNVATCGLGAVQVVATAVTTWLVDRAGRRILLIVSTAGMTFSLL 360
Query: 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419
IV+V FF+K SD SS Y+IL I SV+ VVA+VV FSLG+G IPWVIMSEILPINIKGL
Sbjct: 361 IVSVVFFLKDLTSDTSSLYNILSILSVVSVVALVVFFSLGLGAIPWVIMSEILPINIKGL 420
Query: 420 AGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479
AGS+ATLANW WL+TMTANLLL WS GGTFAIY +VSA T+AFV +WVPETKG+TLEE
Sbjct: 421 AGSMATLANWFIAWLVTMTANLLLEWSNGGTFAIYMLVSALTMAFVILWVPETKGRTLEE 480
Query: 480 IQRSLR 485
IQ S R
Sbjct: 481 IQFSFR 486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223557|ref|NP_173377.1| sugar transporter ERD6-like 4 [Arabidopsis thaliana] gi|75331761|sp|Q93YP9.1|ERDL4_ARATH RecName: Full=Sugar transporter ERD6-like 4 gi|16648957|gb|AAL24330.1| similar to integral membrane protein [Arabidopsis thaliana] gi|20259852|gb|AAM13273.1| similar to integral membrane protein [Arabidopsis thaliana] gi|332191732|gb|AEE29853.1| sugar transporter ERD6-like 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/488 (79%), Positives = 446/488 (91%), Gaps = 3/488 (0%)
Query: 1 MSFRDESDDQ---NLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGP 57
MSFRD++ ++ +LR+PFLHTGSWYRMGSRQSSM+ SSQVIRDSSISVLACVLIVALGP
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESSQVIRDSSISVLACVLIVALGP 60
Query: 58 IQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM 117
IQFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EY+GRKGSLM
Sbjct: 61 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSLM 120
Query: 118 IAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 177
IAAIPNIIGWL+ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQ +RGALGSVN
Sbjct: 121 IAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVN 180
Query: 178 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEAS 237
QLSVTIGIMLAYLLGLFVPWRILAVLG+LPCT+LI GLFFIPESPRWLAKMG+T+DFE S
Sbjct: 181 QLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFETS 240
Query: 238 LQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGI 297
LQVLRGF+TDI++EVNEIKRSVASSS+R+ +RF +LK+RRYYFPL VGIGLL LQQL GI
Sbjct: 241 LQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGGI 300
Query: 298 NGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357
NGV+FYSSTIFESAG+TSS+VAT G+G +QV+ATG+ TWL DKAGRR LL+ISS+GMT+S
Sbjct: 301 NGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTIS 360
Query: 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIK 417
++IVAV+F++K FVS DS+ Y+IL + SV+GVVAMV++ SLGMGPIPW+IMSEILP+NIK
Sbjct: 361 LVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNIK 420
Query: 418 GLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTL 477
GLAGS+ATL NW WL+TMTAN+LL WS GGTF +Y +V FTV FVS+WVPETKGKTL
Sbjct: 421 GLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKTL 480
Query: 478 EEIQRSLR 485
EEIQ R
Sbjct: 481 EEIQALFR 488
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/483 (78%), Positives = 440/483 (91%), Gaps = 1/483 (0%)
Query: 4 RDESDDQNLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGPIQFGF 62
+ D ++L+KPFLHTGSWY+MGSRQSS+MGSS QVIRD ++SVL CVLIVALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 63 TCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122
TCGYSSPTQ AI RDL L++SEFS F SLSNVGAMVGAI SGQI+EYIGRKGSLMIAAIP
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 123 NIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVT 182
NIIGWLAISFA++SSFLYMGRLLEGFGVGIISY VPVYIAEIAPQNLRG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 183 IGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLR 242
IGIMLAYLLGLFV WR+LA+LGILPCT+LI GLFFIPESPRWLAKMGM ++FE SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 243 GFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVF 302
GFDTDIS+EV+EIKRSVAS+ +R IRF++LK++RY+FPL VGIGLL+LQQLSGING++F
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 303 YSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362
YS+TIF +AGI+SS+ AT+GLGA+QVIATG++TWL DK+GRR LLIISS MTVS+LIV+
Sbjct: 302 YSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLIISSSVMTVSLLIVS 361
Query: 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGS 422
++F+++G VS+DS +SIL I S++G+VAMV+ FSLG+GPIPW+IMSEILP+NIKGLAGS
Sbjct: 362 IAFYLEGVVSEDSHLFSILGIVSIVGLVAMVIGFSLGLGPIPWLIMSEILPVNIKGLAGS 421
Query: 423 VATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQR 482
+AT+ NWL W ITMTANLLLNWS GGTF IYTVV+AFT+AF+++WVPETKG+TLEEIQ
Sbjct: 422 IATMGNWLISWGITMTANLLLNWSSGGTFTIYTVVAAFTIAFIAMWVPETKGRTLEEIQF 481
Query: 483 SLR 485
S R
Sbjct: 482 SFR 484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 1.0 | 0.995 | 0.761 | 2.6e-198 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 1.0 | 0.993 | 0.75 | 4.2e-198 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.898 | 0.941 | 0.451 | 5.3e-104 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.909 | 0.914 | 0.440 | 1.8e-101 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.907 | 0.936 | 0.449 | 1.3e-98 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.905 | 0.934 | 0.433 | 6.1e-94 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.896 | 0.877 | 0.418 | 3.4e-93 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.880 | 0.924 | 0.432 | 1.8e-87 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.905 | 0.918 | 0.406 | 3.7e-87 | |
| TAIR|locus:2138927 | 482 | AT4G04750 [Arabidopsis thalian | 0.884 | 0.890 | 0.414 | 6e-87 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1920 (680.9 bits), Expect = 2.6e-198, P = 2.6e-198
Identities = 371/487 (76%), Positives = 421/487 (86%)
Query: 1 MSFRDESDD--QNLRKPFLHTGSWYXXXXXXXXXXXXXXVIRDSSISVLACVLIVALGPI 58
MSFRD++++ +LR+PF+HTGSWY VIRDSSISVLACVLIVALGPI
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPI 60
Query: 59 QFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI 118
QFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 119 AAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178
AAIPNIIGWL ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 121 AAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQ 180
Query: 179 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASL 238
LSVTIGIMLAYLLGLFVPWRILAVLGILPCT+LI GLFFIPESPRWLAKMGMT++FE SL
Sbjct: 181 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVXXXXXXXXXXSGIN 298
QVLRGF+TDI++EVNEIKRSVASS++R T+RF +LK+RRYYFPL V GIN
Sbjct: 241 QVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGIN 300
Query: 299 GVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358
GV+FYSSTIFESAG+TSS+ AT G+GA+QV+AT ++TWL DKAGRR LL ISSVGMT+S+
Sbjct: 301 GVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISL 360
Query: 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418
+IVA +F++K FVS DS YS L I SV+GVVAMVV FSLGMGPIPW+IMSEILP+NIKG
Sbjct: 361 VIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKG 420
Query: 419 LAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
LAGS+ATLANW WLITMTANLLL WS GGTF +Y +V AFTV FV++WVPETKGKTLE
Sbjct: 421 LAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLE 480
Query: 479 EIQRSLR 485
E+Q R
Sbjct: 481 ELQSLFR 487
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 366/488 (75%), Positives = 424/488 (86%)
Query: 1 MSFRDESDDQ---NLRKPFLHTGSWYXXXXXXXXXXXXXXVIRDSSISVLACVLIVALGP 57
MSFRD++ ++ +LR+PFLHTGSWY VIRDSSISVLACVLIVALGP
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESSQVIRDSSISVLACVLIVALGP 60
Query: 58 IQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM 117
IQFGFTCGYSSPTQ AIT+DL LT+SE+S+F SLSNVGAMVGAI SGQI+EY+GRKGSLM
Sbjct: 61 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSLM 120
Query: 118 IAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 177
IAAIPNIIGWL+ISFA+++SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQ +RGALGSVN
Sbjct: 121 IAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVN 180
Query: 178 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEAS 237
QLSVTIGIMLAYLLGLFVPWRILAVLG+LPCT+LI GLFFIPESPRWLAKMG+T+DFE S
Sbjct: 181 QLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFETS 240
Query: 238 LQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVXXXXXXXXXXSGI 297
LQVLRGF+TDI++EVNEIKRSVASSS+R+ +RF +LK+RRYYFPL V GI
Sbjct: 241 LQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGGI 300
Query: 298 NGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357
NGV+FYSSTIFESAG+TSS+VAT G+G +QV+ATG+ TWL DKAGRR LL+ISS+GMT+S
Sbjct: 301 NGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTIS 360
Query: 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIK 417
++IVAV+F++K FVS DS+ Y+IL + SV+GVVAMV++ SLGMGPIPW+IMSEILP+NIK
Sbjct: 361 LVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNIK 420
Query: 418 GLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTL 477
GLAGS+ATL NW WL+TMTAN+LL WS GGTF +Y +V FTV FVS+WVPETKGKTL
Sbjct: 421 GLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKTL 480
Query: 478 EEIQRSLR 485
EEIQ R
Sbjct: 481 EEIQALFR 488
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 199/441 (45%), Positives = 284/441 (64%)
Query: 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGA 100
D V + G FG GYSSP Q AI DL LT++EFSLF SL GAM+GA
Sbjct: 23 DQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGA 82
Query: 101 ITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVY 160
ITSG I++ +GRKG++ +++ ++GWLAI FA+ L +GRL G+G+G SY VP++
Sbjct: 83 ITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIF 142
Query: 161 IAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPE 220
IAEIAP+ RGAL ++NQ+ + G+ +++++G V WR+LA++GI+PC GLFFIPE
Sbjct: 143 IAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPE 202
Query: 221 SPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF 280
SPRWLAK+G +FEA+L+ LRG DIS E EI+ + + R + +L QRRY
Sbjct: 203 SPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIR 262
Query: 281 PLTVXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADK 340
+ + GING+ FY+S+IFE AG + + + LQV+ T + + D+
Sbjct: 263 SVLIAFGLMVFQQFGGINGICFYTSSIFEQAGFPTR-LGMIIYAVLQVVITALNAPIVDR 321
Query: 341 AGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGM 400
AGR+ LL++S+ G+ + LI AVSF++K V D + + + +V+G++ + +FS GM
Sbjct: 322 AGRKPLLLVSATGLVIGCLIAAVSFYLK--VHD--MAHEAVPVLAVVGIMVYIGSFSAGM 377
Query: 401 GPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAF 460
G +PWV+MSEI PINIKG+AG +ATL NW W ++ T N L++WS GTF IY ++A
Sbjct: 378 GAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINAL 437
Query: 461 TVAFVSIWVPETKGKTLEEIQ 481
+ FV VPETKGKTLE+IQ
Sbjct: 438 AIVFVIAIVPETKGKTLEQIQ 458
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 196/445 (44%), Positives = 286/445 (64%)
Query: 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGA 100
+S + VL + G +FG GYS+PTQ++I +DL L+L+EFS+F S+ +GAM+GA
Sbjct: 39 ESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGA 98
Query: 101 ITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVY 160
+ SG+IS++ GRKG++ +A I GWLA+ F + + L +GR G+G+G+ SY VPVY
Sbjct: 99 VMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVY 158
Query: 161 IAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPE 220
IAEI+P+NLRG L ++NQL + IG +++L+G + W+ LA+ G+ PC +L+ GL FIPE
Sbjct: 159 IAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPE 218
Query: 221 SPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF 280
SPRWLAK G ++F +LQ LRG D DI+ E + I+ S+ + R +L ++Y
Sbjct: 219 SPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGR 278
Query: 281 PLTVXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADK 340
+ + GING+ FY+S F AG TS + T+ + +QV T + T L DK
Sbjct: 279 SVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDK 338
Query: 341 AGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGM 400
+GRR L++IS+ G+ + ++ SF +KG S + +V GV+ V FS+GM
Sbjct: 339 SGRRPLIMISAGGIFLGCILTGTSFLLKG----QSLLLEWVPSLAVGGVLIYVAAFSIGM 394
Query: 401 GPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAF 460
GP+PWVIMSEI PIN+KG+AGS+ L NW W ++ T N L++WS GTF +Y+ +A
Sbjct: 395 GPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAA 454
Query: 461 TVAFVSIWVPETKGKTLEEIQRSLR 485
T+ FV+ VPETKGKTLEEIQ +R
Sbjct: 455 TIIFVAKMVPETKGKTLEEIQACIR 479
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 202/449 (44%), Positives = 295/449 (65%)
Query: 40 RDSSISVLACVLI---VAL-GPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVG 95
+DSS ++ +L+ VA+ G FG GYSSP Q+ +T++L L+++E+SLF S+ +G
Sbjct: 22 QDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIG 81
Query: 96 AMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISY 155
AM+GA SG+I++ IGR+ ++ + + I+GWLAI ++ + +L +GR L G+G+G+ S+
Sbjct: 82 AMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSF 141
Query: 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGL 215
VPVYIAEI P+ LRG +V+QL + +G+ + YLLG F+ WRILA++G++PC + + GL
Sbjct: 142 VVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGL 201
Query: 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQ 275
F IPESPRWLAK+G E+FE +LQ LRG DIS E NEIK + + +L Q
Sbjct: 202 FVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQ 261
Query: 276 RRYYFPLTVXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTT 335
+Y L V G+NG+ FY+S+IFESAG+ SS + + + +Q+ T +
Sbjct: 262 PQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGV 320
Query: 336 WLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVT 395
L DK+GRR LL+IS+ G + +V +SF ++ FV S S L ++ GV+ +
Sbjct: 321 LLMDKSGRRPLLLISATGTCIGCFLVGLSFSLQ-FVKQLSGDASYL---ALTGVLVYTGS 376
Query: 396 FSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYT 455
FSLGMG IPWVIMSEI PI+IKG AGS+ T+ +W+ W+I+ T N L+NW+ GTF ++
Sbjct: 377 FSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFA 436
Query: 456 VVSAFTVAFVSIWVPETKGKTLEEIQRSL 484
V TV FV+ VPETKG+TLEEIQ S+
Sbjct: 437 TVCGATVIFVAKLVPETKGRTLEEIQYSI 465
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 193/445 (43%), Positives = 276/445 (62%)
Query: 38 VIRDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAM 97
V ++S V +I G +FG GYS+PTQ I +L L+ S+FS+F S+ N+GA+
Sbjct: 27 VSEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAV 86
Query: 98 VGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTV 157
+GAITSG+IS++IGRKG++ ++++ + IGWL I A+ L GR L G+G G +S+ V
Sbjct: 87 LGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVV 146
Query: 158 PVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFF 217
PV+IAEI+P+ LRGAL ++NQL + IG+ +L+G V WR LA+ G+ PC +L G +F
Sbjct: 147 PVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWF 206
Query: 218 IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRR 277
IPESPRWL +G DFE +LQ LRG +I+ E EI+ +AS + +L ++
Sbjct: 207 IPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKK 266
Query: 278 YYFPLTVXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGV-TTW 336
+ V GINGV+FY+ IF SAG S + ++ QV+ T + T
Sbjct: 267 NIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATL 325
Query: 337 LADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTF 396
L D+ GRR LL+ S+VGM + L++ SF +K I+ +V GV+ + +F
Sbjct: 326 LIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAH----GLALDIIPALAVSGVLVYIGSF 381
Query: 397 SLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTV 456
S+GMG IPWVIMSEI PIN+KG AG + T+ NWL+ WL++ T N L+ WS GTF +Y
Sbjct: 382 SIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGG 441
Query: 457 VSAFTVAFVSIWVPETKGKTLEEIQ 481
V + F++ VPETKG+TLEEIQ
Sbjct: 442 VCVLAIIFIAKLVPETKGRTLEEIQ 466
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 184/440 (41%), Positives = 277/440 (62%)
Query: 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSG 104
SV + G G G+SS Q IT+DL L+++E+S+F S+ +G ++GA+ SG
Sbjct: 57 SVFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSG 116
Query: 105 QISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEI 164
++++ +GRK +++ I GWL ++ A+ + +L GRLL G GVGI SY +PVYIAEI
Sbjct: 117 KVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEI 176
Query: 165 APQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRW 224
AP+++RG+ NQL GI L +++G F+PWR+L V+G++PC + LFFIPESPRW
Sbjct: 177 APKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRW 236
Query: 225 LAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTV 284
LAK+G ++ +SLQ LRG D DIS E N I+ ++ + + SEL QRRY +PL +
Sbjct: 237 LAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLII 296
Query: 285 XXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRR 344
G +GV +Y+S++F G S+ + T + + V + T L DK GRR
Sbjct: 297 GVGLMFLQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRR 355
Query: 345 ALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIP 404
LL+ S M +S L+++VS+ GF S + IF+ IGV+ +V+F++GMG +P
Sbjct: 356 TLLMASCSAMGLSALLLSVSY---GFQSF-GILPELTPIFTCIGVLGHIVSFAMGMGGLP 411
Query: 405 WVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAF 464
W+IM+EI P+N+K AG++ T+ NWL W+IT T N +L W+ G F I+++VSA ++ F
Sbjct: 412 WIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVF 471
Query: 465 VSIWVPETKGKTLEEIQRSL 484
+ VPETKG++LEEIQ L
Sbjct: 472 IYFLVPETKGRSLEEIQALL 491
|
|
| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 187/432 (43%), Positives = 260/432 (60%)
Query: 52 IVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIG 111
I+ FG GY++ T ++I DL+L+L++FSLF SLS G M+GAI S + + G
Sbjct: 32 IIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFG 91
Query: 112 RKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRG 171
K +L +A + I GWLAIS A++ +L MGR L G GVG+ISY VPVYIAEI P+++RG
Sbjct: 92 HKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRG 151
Query: 172 ALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMT 231
A NQL G+ + Y G F+ WR LA++G +PC I + GLFFIPESPRWLAK G
Sbjct: 152 AFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGRD 211
Query: 232 EDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVXXXXXXX 291
++ E LQ LRG DI E EIK SV +S + + I L ++RY LT+
Sbjct: 212 KECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLL 271
Query: 292 XXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISS 351
G G+ Y ST+F+ AG + + + L + V + + L D+ GRR LL+ S+
Sbjct: 272 QQLCGTAGISSYGSTLFKLAGFPAR-IGMMVLSLIVVPKSLMGLILVDRWGRRPLLMTSA 330
Query: 352 VGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEI 411
+G+ +S + +AV+F VK D I IF IG+++ + F++GMG +PW+IMSEI
Sbjct: 331 LGLCLSCITLAVAFGVK----DVPGIGKITPIFCFIGILSFTMMFAIGMGALPWIIMSEI 386
Query: 412 LPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPE 471
P++IK LAGS+ T+ANW T W+ N +L WS GTF I ++ T+ F VPE
Sbjct: 387 FPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWSPSGTFIISAIICGATIVFTWCLVPE 446
Query: 472 TKGKTLEEIQRS 483
T+ TLEEIQ S
Sbjct: 447 TRRLTLEEIQLS 458
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 182/448 (40%), Positives = 276/448 (61%)
Query: 41 DSSISVLACVLI---VAL-GPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGA 96
DS + ACV++ +A+ G FG + GY+S + I +DL+L++++FS FASLS +GA
Sbjct: 26 DSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGA 85
Query: 97 MVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYT 156
+GA+ SG+++ +GR+ ++ ++ + IIGW +I+FA++ +L GR+ G G+G+ISY
Sbjct: 86 AIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYV 145
Query: 157 VPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLF 216
VPVYIAEI+P+++RG NQL G+ + Y G F+ WRILA+LG LPC I + GLF
Sbjct: 146 VPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLF 205
Query: 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276
F+PESPRWLAK+G ++ E SL LRG + DIS E ++I+ + F +L QR
Sbjct: 206 FVPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQR 265
Query: 277 RYYFPLTVXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTW 336
+Y + L V SG + V+ Y+STI AG + + +TL LG + +
Sbjct: 266 KYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVI 324
Query: 337 LADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTF 396
L DK GRR LL+ S GM ++ +++ V+F ++ + +F+ I V + T+
Sbjct: 325 LVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKM----QLLPELTPVFTFICVTLYIGTY 380
Query: 397 SLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTV 456
++G+G +PWVIMSEI P+NIK AGS+ TL +W + ++T N LL WS GTF ++
Sbjct: 381 AIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGA 440
Query: 457 VSAFTVAFVSIWVPETKGKTLEEIQRSL 484
V + F+ + VPETKG +LEEIQ SL
Sbjct: 441 VGGLALLFIWLLVPETKGLSLEEIQASL 468
|
|
| TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 182/439 (41%), Positives = 270/439 (61%)
Query: 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQ 105
VLA + + G + FG GY++PTQ++I +DL L++++FS F S+ VG ++GA+ G+
Sbjct: 37 VLAFT-VGSCGALSFGCIVGYTAPTQSSIMKDLNLSIADFSFFGSILTVGLILGALICGK 95
Query: 106 ISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIA 165
+++ +GR ++ I I +IGWLAI+FA++ L +GRLL+G VGI SY P+YI+E+A
Sbjct: 96 LADLVGRVYTIWITNILVLIGWLAIAFAKDVRLLDLGRLLQGISVGISSYLGPIYISELA 155
Query: 166 PQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFIPESPRWL 225
P+NLRGA S+ QL V +G+ Y LG V WR LA+LG +P +++ LFFIPESPRWL
Sbjct: 156 PRNLRGAASSLMQLFVGVGLSAFYALGTAVAWRSLAILGSIPSLVVLPLLFFIPESPRWL 215
Query: 226 AKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRT--TIRFSELKQRRYYFPLT 283
AK+G ++ E L LRG +D+S E I ++ + F +L QR+Y PLT
Sbjct: 216 AKVGREKEVEGVLLSLRGAKSDVSDEAATILEYTKHVEQQDIDSRGFFKLFQRKYALPLT 275
Query: 284 VXXXXXXXXXXSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGR 343
+ G+NG FY+ TIF S G+ SSD+ + +Q+ + L D +GR
Sbjct: 276 IGVVLISMPQLGGLNGYTFYTDTIFTSTGV-SSDIGFILTSIVQMTGGVLGVLLVDISGR 334
Query: 344 RALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSI-LDIFSVIGVVAMVVTFSLGMGP 402
R+LL+ S GM + L A+SFF++ ++C+ I ++I V+ ++ LGMGP
Sbjct: 335 RSLLLFSQAGMFLGCLATAISFFLQ-----KNNCWETGTPIMALISVMVYFGSYGLGMGP 389
Query: 403 IPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTV 462
IPW+I SEI P+++KG AG+V L ++ WL+T + N LL WS GTF ++ V
Sbjct: 390 IPWIIASEIYPVDVKGAAGTVCNLVTSISSWLVTYSFNFLLQWSSTGTFMMFATVMGLGF 449
Query: 463 AFVSIWVPETKGKTLEEIQ 481
F + VPETKGK+LEEIQ
Sbjct: 450 VFTAKLVPETKGKSLEEIQ 468
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MKK4 | TRE12_DROME | No assigned EC number | 0.3632 | 0.8969 | 0.8913 | yes | no |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.7930 | 1.0 | 0.9938 | no | no |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3505 | 0.8639 | 0.8784 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3159 | 0.8639 | 0.9168 | yes | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3542 | 0.8639 | 0.8765 | yes | no |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.8090 | 1.0 | 0.9958 | yes | no |
| P58354 | GTR8_BOVIN | No assigned EC number | 0.3536 | 0.8597 | 0.8723 | yes | no |
| Q9NY64 | GTR8_HUMAN | No assigned EC number | 0.3581 | 0.8577 | 0.8721 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024920001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (486 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 485 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-93 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 7e-77 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-58 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-13 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-11 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-10 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 5e-07 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 1e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 4e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 2e-93
Identities = 164/455 (36%), Positives = 249/455 (54%), Gaps = 29/455 (6%)
Query: 49 CVLIVALGPIQFGFTCGYSSPTQTAI-----------TRDLELTLSEFSLFASLSNVGAM 97
L+ ALG FG+ G T I + L S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 98 VGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSF--LYMGRLLEGFGVGIISY 155
+G++ +G++ + GRK SL+I + +IG L FA+ SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF-------VPWRILAVLGILPC 208
VP+YI+EIAP+ LRGALGS+ QL +T GI++A ++GL WRI L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 209 TILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI 268
+L+ GL F+PESPRWL G E+ A L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 269 RFSELKQRRYY-FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQ 327
+ EL + + L +G+ L I QQL+GIN + +YS TIFE+ G++ S + T+ +G +
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299
Query: 328 VIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVI 387
+ T + +L D+ GRR LL++ + GM + L++ V+ S I+ I ++
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGV----AKSKGAGIVAIVFIL 355
Query: 388 GVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447
+A F+LG GP+PWVI+SE+ P+ ++ A ++AT ANWL +LI ++ G
Sbjct: 356 LFIAF---FALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 448 GGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQR 482
G F ++ + + FV +VPETKG+TLEEI
Sbjct: 413 GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 7e-77
Identities = 161/462 (34%), Positives = 252/462 (54%), Gaps = 33/462 (7%)
Query: 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTL--------SEFSLFASLSNVGAM 97
V LI A+G + FG+ G + + T S + L S+ VG
Sbjct: 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85
Query: 98 VGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYM---GRLLEGFGVGIIS 154
+GA+ +G +S+ GRK SL+I A+ +IG + + A + + M GR+L G GVGI S
Sbjct: 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145
Query: 155 YTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF-------VPWRILAVLGILP 207
VP+Y++EIAP+ LRGAL S+ QL++T GI++AY G + WRI L ++P
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205
Query: 208 CTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFD-TDISI----EVNEIKRSVASS 262
+L GLFF+PESPRWL G E+ SL LRG D + E+ +IKRS+
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265
Query: 263 SRRTTI-RFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VA 319
S + + + R L +G+ L QQ +GIN +++YS TIFE+AG+++ +
Sbjct: 266 SVQPSWGSLFSSTR-RIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLV 324
Query: 320 TLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYS 379
++ +GA+ T V +L D+ GRR LL+I + GM + + ++ + FV+ S
Sbjct: 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA--SFVTGSSKSSG 382
Query: 380 ILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439
+ I ++ +A F++G GP+PWVI+SEI P++++ S+A ANWL +++
Sbjct: 383 NVAIVFILLFIAF---FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF 439
Query: 440 NLLLNWSG-GGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEI 480
+L G GG F + ++ + FV ++PETKG+TLEEI
Sbjct: 440 PTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 5e-58
Identities = 131/484 (27%), Positives = 224/484 (46%), Gaps = 62/484 (12%)
Query: 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQ--------TAITRDLELTLSEFSLFASLSN 93
+S + + L+ LG + FG+ S T S + +
Sbjct: 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASAL 65
Query: 94 VGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMG----------- 142
+G ++G G S GR+ SL IAA+ I L S E F +G
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALG-SAWPEFGFTSIGPDNTGYVPEFV 124
Query: 143 --RLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVP---- 196
R++ G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD 184
Query: 197 --------WRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDI 248
WR + +P + + L+F+PE+PR+L G E E L+ + G +T
Sbjct: 185 ASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLA 243
Query: 249 SIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF 308
+ + EIK S+ + + +G+ L + QQ GIN V++Y+ IF
Sbjct: 244 TQALQEIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIF 298
Query: 309 ESAGITSSDVA---TLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSF 365
++ G S+D+A T+ +G + + T + DK GR+ L II ++GM + + + +F
Sbjct: 299 KTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 357
Query: 366 FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT 425
+ I +++ ++ V F++ GP+ WV++SEI P I+G A ++A
Sbjct: 358 Y-----------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV 406
Query: 426 LANWLTVWLITMT-------ANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478
A W+ + ++ T + L+ ++ G ++ IY + F+ +VPETKGKTLE
Sbjct: 407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466
Query: 479 EIQR 482
E++
Sbjct: 467 EMEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-18
Identities = 90/402 (22%), Positives = 167/402 (41%), Gaps = 37/402 (9%)
Query: 87 LFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPN-IIGWLAISFARESSFLYMGRLL 145
L S VG ++G+ G +S+ GRK L+++ + + G L F+ + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRLL 189
Query: 146 EGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVP-WRILAVLG 204
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+P WR L +
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAV 249
Query: 205 ILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFD-TDISIEVNEIKRSVASSS 263
LP + +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 250 SLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS 309
Query: 264 RRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGL 323
+ F +L + T L L L +Y + + +
Sbjct: 310 SKKQYSFLDLFRTPNLRKTT-----LCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFIS 364
Query: 324 GALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDI 383
G +++ A +T L D+ GRR + S + V++L + FV +D+
Sbjct: 365 GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL---LLLFV------------PVDL 409
Query: 384 FSVIGVVAMVVTFSLGMG-PIPWVIMSEILPINIKGLAGSVATLANWL-----TVWLITM 437
+ + +A++ F + + ++ +E+ P ++ L V + + +
Sbjct: 410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLG 469
Query: 438 TANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479
L L ++ + A +++++PETKG L E
Sbjct: 470 EKWLFL------PLVLFGGL-ALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Query: 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY 109
+L++ LG G G SP + DL L+ S+ L S ++G +G++ +G +S+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 110 IGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNL 169
GR+ L++ + +G L ++FA L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 170 RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIP 219
RG + +G +L LLG + WR L ++ + +L L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 62 FTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121
F G+ P+ +DL + S + + +G MVGA G +++ +GRK L+I
Sbjct: 184 FVVGFVLPSAE---KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 122 PNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGA--------- 172
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 173 -LGSVNQLSVTIGIMLAYLLGL-------FVPWRILAVLGILPCTILITGLFFIPESPRW 224
+G + ++ I+ Y F WR+ ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 225 LAKMG 229
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 84/383 (21%), Positives = 148/383 (38%), Gaps = 92/383 (24%)
Query: 98 VGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI----SFARESSF----LYMGRLLEGFG 149
+GAI G + IGRK +L+I + IG L I S+A + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 150 VGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVP------------W 197
+G +Y+AE AP RG GS Q+ +G++LA L L + W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 198 RILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKR 257
RI ++ + I + + E+P +
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETP--------------------------------VFE 197
Query: 258 SVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF------ESA 311
++ +E ++ P +G+GL+I FY T + ++
Sbjct: 198 KAQEKHKKKRGPIAETL-TKHRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTL 250
Query: 312 GITSSDVATLGLGALQVIATGVTT----WLADKAGRRALLIISSVGMTVSILIVAVSFFV 367
G++++ L + L +I +T L+D+ GRR +LII TV ++AV +
Sbjct: 251 GLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLII----FTVLAALLAVPLLM 304
Query: 368 KGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIK----GLAGSV 423
+ D S V+ M + + GP+ + E+ P ++ LA ++
Sbjct: 305 --ALLDSGSFTLFF-----FLVLGMALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNL 356
Query: 424 ATL-----ANWLTVWLITMTANL 441
A A ++ L+ MT +
Sbjct: 357 AGAIFGGFAPYIAAALVAMTGDW 379
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 83/389 (21%), Positives = 148/389 (38%), Gaps = 45/389 (11%)
Query: 65 GYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124
G+++P AI+ + L + S +G GA+ G +++ IGR+ L+ + +
Sbjct: 37 GFAAP---AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIG 184
+ L + A + L + R L G G+G + + ++E AP+ RG + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 185 IMLAYLL-GLFVP---WRIL-AVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQ 239
+ L G +P WR L V GI P +L+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-------PET 206
Query: 240 VLRGFDTDISIEVNEIKRSVASSSRRTTIR---FSELKQRRYYFPLTVGIGLLILQQLSG 296
V R + E + ++ + F L Q + +TV + LL L G
Sbjct: 207 VRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVG 265
Query: 297 INGVVFYSSTIFESAGITSSDVATLGLG--ALQVIATGVTTWLADKAGRRALLIISSVGM 354
+ + + + G + S AT G VI + + WLAD+ G R ++ +G
Sbjct: 266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG- 324
Query: 355 TVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPI 414
++ V V + ++G +A F G + +M+ P
Sbjct: 325 --AVFAVLVGST-----------LFSPTLLLLLGAIAGF--FVNGGQSGLYALMALFYPT 369
Query: 415 NIKGLAGS--------VATLANWLTVWLI 435
I+ A + L +L+
Sbjct: 370 AIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 62/365 (16%), Positives = 128/365 (35%), Gaps = 53/365 (14%)
Query: 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF 132
+ DL ++ +E L + ++G + +G++S+ GR+ L+I + +G L + F
Sbjct: 22 YLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF 81
Query: 133 ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG 192
A L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 82 ASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLG 141
Query: 193 LFV----PWR-ILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTD 247
+ WR +L IL + +P P
Sbjct: 142 GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPP------------------------ 177
Query: 248 ISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTI 307
++ + + + L + + L + ++ Y
Sbjct: 178 ----ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGF-----AFFALLTYLPLY 228
Query: 308 FESAGITSSDVATLG--LGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSF 365
E G+++ L G L I + L+D+ GRR L+++ + + ++ L +A+
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 366 FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT 425
++ + ++ + + P ++S++ P +G A +
Sbjct: 289 L-------------TESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335
Query: 426 LANWL 430
A L
Sbjct: 336 TAGSL 340
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 74 ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA 133
+ ++ L +++ S +G + GA+ G++++ IGRK L+++ + G +++ A
Sbjct: 41 MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATA 98
Query: 134 RESSF--LYMGRLLEGFGVGIISYTVPVYIA---EIAPQNLRGALGSVNQLSVTIGIMLA 188
+ F L + RLL G G+G +P IA E LRG S+ V G LA
Sbjct: 99 QAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALA 155
Query: 189 YLLGLFVP----WR-ILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRG 243
++G+ WR I V G+ P ++ + ++PES + G + L+ L G
Sbjct: 156 SVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 59/195 (30%), Positives = 85/195 (43%), Gaps = 44/195 (22%)
Query: 72 TAITRDLELTLSEF-SLFASLSNVGA---M--VGAITSGQISEYIGRK------------ 113
TAI + +EF SL + + GA M +GAI G + +GR+
Sbjct: 39 TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMAS 98
Query: 114 GSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGAL 173
G+L+IA +P G+ I A L +GRLL+GF G+ V VY+AEIA +G
Sbjct: 99 GTLLIAFVP---GYATIGLAAPLLVL-LGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY 154
Query: 174 GSVNQLSVTIGIMLAYLLGLFVP------------WRILAVLGILPCTILITGLFFIPES 221
S S + ++ A LLG + WRI ++G C I + +F I S
Sbjct: 155 TSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---CLI-VPFIFLIRRS 210
Query: 222 PRWLAKMGMTEDFEA 236
TE+F A
Sbjct: 211 LE------ETEEFLA 219
|
Length = 434 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 98 VGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTV 157
GA+ G + GR+ ++ + + G LA FA +++ RL+ G G+G +
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 158 PVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------PWRILAVLGILPCTIL 211
Y+ E P++LR + +G ++A + V WR L + ILP
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 212 ITGLFFIPESPRWLAK 227
+ IPE+ W K
Sbjct: 182 LWLRKNIPEAEDWKEK 197
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 86 SLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLL 145
L + +G ++ + SG +++ GRK L++ ++ + + + L + R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 146 EGFGVGIISYTVPVYIAEIAPQNLR----GALGSVNQLSVTIGIMLAYLLGLFVPWR-IL 200
+GFG IA+I P R G + + L +G L +L F+ WR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 201 AVLGILPCTILITGLFFIPES 221
L IL I F +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
Query: 72 TAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS 131
T + + LT + + S + + G + G + + GR+ +++I+ + +G LA
Sbjct: 44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG 103
Query: 132 FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL 191
FA L++ RL+ G G+ + Y+ E P++LR +IG ++A +
Sbjct: 104 FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163
Query: 192 -GLFVP---WRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVL 241
L VP WR L +GILP + +PE+ W K + +L
Sbjct: 164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 74/414 (17%), Positives = 149/414 (35%), Gaps = 42/414 (10%)
Query: 68 SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGW 127
S + DL L+ +++ S + G +VG G + + G + +L + I+ W
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVF----IVIW 69
Query: 128 ----LAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSV----NQL 179
+FA LY+ R+L G + + +A P + R S+ L
Sbjct: 70 GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129
Query: 180 SVTIGIMLAYLLGLFVPWRILAVLGILPCTIL-ITGLFFIPESPRWLAKMGMTEDFEASL 238
IG L + + W+ ++ + I + L FIP+ P+ K + E +
Sbjct: 130 GGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---KAKWLTEEEKYI 186
Query: 239 QVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298
V + K+ I+ LK RR + + I L
Sbjct: 187 VVGGLLAEQQGKGPSTPKKY--------QIKEL-LKDRRVWGLALGQFLVNIG--LGFFL 235
Query: 299 GVVFYSSTIFESAGITSSDVATLGL--GALQVIATGVTTWLADKAGRRALLIISSVGMTV 356
++ + + + G++ + + G + I + L+D RR ++ + +
Sbjct: 236 --TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAI 293
Query: 357 SILIVA-VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN 415
+V + F +V+ + +++ + F LG G I W ++S+ P N
Sbjct: 294 IAGLVLSLLMFATNYVNIPYAALALV----------ALGFFGLGAGAIGWALISDNAPGN 343
Query: 416 IKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWV 469
I GL G + L + + + +G A+ V + + +S +
Sbjct: 344 IAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 72 TAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS 131
I DL ++ + +G +GA ++ + R+ L+ I+ L +
Sbjct: 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA 96
Query: 132 FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRG-ALGSVN---QLSVTIGIML 187
A + L + R L G G+ A + P RG AL V L+ +G+ L
Sbjct: 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156
Query: 188 AYLLGLFVPWR----ILAVLGIL 206
LG WR +AVL +L
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALL 179
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 3/175 (1%)
Query: 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQ 105
+ +L+ + G + + L L+ +E L SL +G ++GA+ G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 106 ISEYIGRKGSLMIAAIP-NIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEI 164
+S+ +GR+ L++ + +G L ++ A + L + LL GFG+G + +E+
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 165 APQNLRGALGSVNQLSVTIGIMLAYLLG--LFVPWRILAVLGILPCTILITGLFF 217
AP RG + ++G L LL L V IL L+ L
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 96/459 (20%), Positives = 169/459 (36%), Gaps = 90/459 (19%)
Query: 92 SNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESS------FLYMGRLL 145
+++G + G + G +++ +GRK + I II +A + SS L R
Sbjct: 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW 124
Query: 146 EGFGVGIISYTVPVYI-AEIAPQNLRGAL-GSV------NQLS---VTIGIMLAY----- 189
G G+G Y + I +E A + RGA+ +V L+ V + ++ +
Sbjct: 125 LGVGIGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE 183
Query: 190 -------LLGLFVP-----WRILAVLGILPCTILITGLFF---IPESPRWLAKMGMTEDF 234
G VP WRIL G +P + L+F IPE+PR+ A + +
Sbjct: 184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALL---ALYFRLTIPETPRYTADVAKDVEQ 240
Query: 235 EAS--LQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPL--TVGIGLLI 290
AS VL+ EV + +V + F+ + R+ L T G L+
Sbjct: 241 AASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLL 300
Query: 291 LQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATG--------------VTTW 336
G+N I + G + L A G VT +
Sbjct: 301 DIAFYGVN---LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF 357
Query: 337 LADKAGRRALLIISSVGMTVSILIVAVSFF---VKGFVSDDSSCYSILDIFSVIGVVAMV 393
L D GR+ + ++ +TV ++ ++ GF++ Y + F+ G A
Sbjct: 358 LVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLA----IYVLAQFFANFGPNA-- 411
Query: 394 VTFSLGMGPIPWVIMSEILPINIKGLAGSV--------ATLANWLTVWLITMTANLLLNW 445
TF ++ E+ P + A + A + + ++L
Sbjct: 412 TTF---------IVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462
Query: 446 SGGGTFAIYTVVSAFTV--AFVSIWVPETKGKTLEEIQR 482
+G + + + F ++ +PETKGK+LEE+
Sbjct: 463 TGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 21/197 (10%)
Query: 278 YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGL---GALQVIATGVT 334
+ L + + L G G++ Y + S+ A L L G ++ +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 335 TWLADKAGRR-ALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMV 393
L+D+ GRR LL+I + + +L++A++ + + + ++
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL----------------LVALLLL 275
Query: 394 VTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL-NWSGGGTFA 452
P + SE+ P +G A + L L + A LLL GG F
Sbjct: 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL 335
Query: 453 IYTVVSAFTVAFVSIWV 469
I ++ + +
Sbjct: 336 ILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.83 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.77 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.7 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.67 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.53 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.52 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.52 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.48 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.47 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.47 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.43 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.37 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.36 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.33 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.33 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.32 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.31 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.29 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.28 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.26 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.25 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.25 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.25 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.25 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.24 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.23 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.22 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.19 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.19 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.19 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.19 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.17 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.16 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.16 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.15 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.15 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.14 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.14 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.13 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.11 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.11 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.1 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.1 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.09 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.09 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.09 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.07 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.06 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.04 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.04 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.03 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.03 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.03 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.0 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.94 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.93 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.9 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.85 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.84 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.81 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.79 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.71 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.68 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.67 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.58 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.51 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.51 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.49 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.47 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.46 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.45 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.39 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.38 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.38 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.38 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.36 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.35 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.33 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.3 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.19 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.11 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.07 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.8 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.74 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.71 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.67 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.61 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.5 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.31 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.25 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.07 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.61 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.53 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.17 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.51 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.36 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.3 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.01 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.67 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.63 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.6 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.47 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.64 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 91.8 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.15 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.07 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.37 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 89.06 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 85.76 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 84.34 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.94 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 81.46 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.41 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=336.34 Aligned_cols=438 Identities=32% Similarity=0.593 Sum_probs=371.3
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHH--------hhhC--CCchh----hhHHHHHHHHHHHHHHHhHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAIT--------RDLE--LTLSE----FSLFASLSNVGAMVGAITSGQIS 107 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~i~~~~~G~l~ 107 (485)
..++...+.+..+++.+..+|+.+.+++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.|+++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777999999998888755443 3345 33332 57889999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 011470 108 EYIGRKGSLMIAAIPNIIGWLAISFA---RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIG 184 (485)
Q Consensus 108 dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (485)
||+|||..++++.++..++.+++.++ +++..++++|++.|+..|.......-++.|..|++.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999999988888777765 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc------cccchhHHHhhHHHHHHHHHHhhccCCchhHHHh-cCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 011470 185 IMLAYLLGL------FVPWRILAVLGILPCTILITGLFFIPESPRWLAK-MGMTEDFEASLQVLRGFDTDISIEVNEIKR 257 (485)
Q Consensus 185 ~~~~~~~~~------~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (485)
.+++..++. .-.|++.+.+..++.++.++...++||||||+.. ++++++|++.++..++.+++.....++.++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 999966653 2269999999999999999999999999999988 899999999999999987655444444333
Q ss_pred HHhhc-cccchhhhHHhhhcc-cchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHH
Q 011470 258 SVASS-SRRTTIRFSELKQRR-YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGV 333 (485)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 333 (485)
..+++ .++++.+++++++++ .+++..+.+.+....++.+.+...+|...++++.|++... ......++..++.+++
T Consensus 245 ~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 245 IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 333667788888764 5566778888999999999999999999999999998775 7777788999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC
Q 011470 334 TTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP 413 (485)
Q Consensus 334 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (485)
+.++.||.|||++++.+..++.+..+++........... .|..+..+.+.+++...++.+.+|+.+-+.+|++|
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~ 398 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP 398 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence 999999999999999999999998888877766553311 24455667888889999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhhC
Q 011470 414 INIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQRSLR 485 (485)
Q Consensus 414 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
++.|+.+++.....+++..++....+..+.+.-+.+.+.++.+.+.+..+..+..+||||+|+.+|+.++++
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999965558899999999999999999999999999999887753
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=351.60 Aligned_cols=417 Identities=20% Similarity=0.194 Sum_probs=318.5
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
..++.|.++++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34667778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc-------
Q 011470 122 PNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF------- 194 (485)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~------- 194 (485)
+.++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++...++.+|.++++.++..
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988865422
Q ss_pred ----------ccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcch----HHH--HHHHHHH
Q 011470 195 ----------VPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDI----SIE--VNEIKRS 258 (485)
Q Consensus 195 ----------l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 258 (485)
.+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+... ... .+..+..
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 169999999888888888888899999999999999999999999988765321 110 0011000
Q ss_pred Hhh------ccccc-----------------hhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc----
Q 011470 259 VAS------SSRRT-----------------TIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA---- 311 (485)
Q Consensus 259 ~~~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 311 (485)
.+. +.... ...++.++++++.+. .+.+++.++.....++++..|.|.++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREI-TIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 013455666665544 44455555666667888999999875431
Q ss_pred --------------------------------------CC-----C----------------------------------
Q 011470 312 --------------------------------------GI-----T---------------------------------- 314 (485)
Q Consensus 312 --------------------------------------g~-----~---------------------------------- 314 (485)
|+ +
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence 00 0
Q ss_pred ------------------------------c------hhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 011470 315 ------------------------------S------SDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358 (485)
Q Consensus 315 ------------------------------~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 358 (485)
. ......+.+++.+++.++.++++||+|||+++..+.++.+++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ 639 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC 639 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 0011334467889999999999999999999998888888877
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMT 438 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 438 (485)
+++.+... ....++..++++++.+ +..+..+++++|++|++.|++++|+.+....+|++++|++
T Consensus 640 ll~~~~~s---------------~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i 703 (742)
T TIGR01299 640 FFLSFGNS---------------ESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILI 703 (742)
T ss_pred HHHHHHcc---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654311 0112222223333333 3344556899999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011470 439 ANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKT 476 (485)
Q Consensus 439 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (485)
.+.+.+.+...++.+.+++.++.+ ++..++||++++.
T Consensus 704 ~g~L~~~~~~~pf~i~a~~lll~~-ll~~~LPET~~~~ 740 (742)
T TIGR01299 704 FGSFVGITKAAPILFASAALACGG-LLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH-HHHHhCCCCcccc
Confidence 998888654445555555554444 4445669988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=333.39 Aligned_cols=425 Identities=28% Similarity=0.513 Sum_probs=317.6
Q ss_pred hHHHHHHHHHhhhhccccccccccchhHHHHHhhh--------CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHH
Q 011470 44 ISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDL--------ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGS 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~ 115 (485)
+....++++++++.+.++++...+++..|.++++| +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566667777888999999999999999999988 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 011470 116 LMIAAIPNIIGWLAISFA------------RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTI 183 (485)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (485)
++++.++++++.++++++ ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888863 33567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHH
Q 011470 184 GIMLAYLLGL------------FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIE 251 (485)
Q Consensus 184 G~~~~~~~~~------------~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (485)
|.++++.++. ..+||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.+.. ...
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHH
Confidence 9998877643 238999999977777666666778999999988888888777766665443221 111
Q ss_pred HHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHH
Q 011470 252 VNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVI 329 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 329 (485)
.++..+..+.+. ...+..+. ..............+....+.+...++.|.+.++.|.+... ......++..++
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 111111110000 00011111 00111122222333444445556677888888888886543 444556788899
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhcc
Q 011470 330 ATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMS 409 (485)
Q Consensus 330 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (485)
+.++.++++||+|||+.+..+.++++++.+.+........ ..........++..+++..+.|..+.++.
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 9999999999999999999998888888777654322111 01122334444555555556677789999
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH------H-hhcchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHh
Q 011470 410 EILPINIKGLAGSVATLANWLTVWLITMTANLLL------N-WSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQR 482 (485)
Q Consensus 410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (485)
|.+|++.|+++.|+.+...+++.++++.+.+.+. + .+....+.++++++++..++.+.+.||+|+++.+|.++
T Consensus 391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 9999999999999999999999999988887665 2 44455677777777777777777889999999998887
Q ss_pred hhC
Q 011470 483 SLR 485 (485)
Q Consensus 483 ~~~ 485 (485)
+++
T Consensus 471 ~~~ 473 (479)
T PRK10077 471 LWE 473 (479)
T ss_pred HHh
Confidence 653
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=340.71 Aligned_cols=427 Identities=18% Similarity=0.226 Sum_probs=310.9
Q ss_pred cchhHHHHHHHHHhhhhccccccccccchhHHHHHhhh-----CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHH
Q 011470 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDL-----ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGS 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~ 115 (485)
+..++++.+++++.++.+.+++|....+.++|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 44567777888889999999999999999999887753 3456678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 011470 116 LMIAAIPNIIGWLAISFARE------SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAY 189 (485)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 189 (485)
+.++.++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865 789999999999999999999999999999999999999999999999988887
Q ss_pred Hhhcc---------------------------ccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHH-HHHHHHHHH
Q 011470 190 LLGLF---------------------------VPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTE-DFEASLQVL 241 (485)
Q Consensus 190 ~~~~~---------------------------l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~~ 241 (485)
.++.. .+||+.|.+.+++.++.++..+++||+|+|+..+++.+ ++.+.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 66531 16999998888888888888889999999998877764 455555555
Q ss_pred hCCCcchHHHHHHHHHHHhhccccchhhhHHhhhccc---chhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh-
Q 011470 242 RGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRY---YFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD- 317 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 317 (485)
...+.+... ++.++. +++++..+.+++++++++. .++..+......+.....++....+.|.++++.|++...
T Consensus 249 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~ 325 (502)
T TIGR00887 249 LQVKIEAEP--DEVEKA-STAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAA 325 (502)
T ss_pred hccccccCc--ccccch-hccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCcc
Confidence 432211110 010000 0011112234666665321 112223222233333333445666788888888876431
Q ss_pred ------------h-HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHH
Q 011470 318 ------------V-ATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIF 384 (485)
Q Consensus 318 ------------~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (485)
. ......++.+++.++.++++||+|||+.+..+..+..++..++......... ..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~------------~~ 393 (502)
T TIGR00887 326 TNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST------------HG 393 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch------------hH
Confidence 0 1222345667788999999999999999888877777766655543211000 01
Q ss_pred HHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cchhHHH
Q 011470 385 SVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS-----------GGGTFAI 453 (485)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~-----------~~~~~~~ 453 (485)
.+.....+...++.+..+..+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.+.. ....+.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 473 (502)
T TIGR00887 394 FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI 473 (502)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHH
Confidence 11222222333455666777788999999999999999999999999999999999998732 1234666
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHHHhh
Q 011470 454 YTVVSAFTVAFVSIWVPETKGKTLEEIQRS 483 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
+++++++..+ .++++||++++++||+++|
T Consensus 474 ~~~~~~~~~i-~~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 474 FALFMFLGIL-FTLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHHHHHHH-HheEeccCCCCCHHhhhCC
Confidence 6666665544 3467799999999998765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=330.92 Aligned_cols=440 Identities=36% Similarity=0.616 Sum_probs=365.8
Q ss_pred chhHHHHHHHHHhhhhcccccc--ccccchhHHHHHhhhC-----CCc--hhhhHHHHHHHHHHHHHHHhHHHHHhhhch
Q 011470 42 SSISVLACVLIVALGPIQFGFT--CGYSSPTQTAITRDLE-----LTL--SEFSLFASLSNVGAMVGAITSGQISEYIGR 112 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~~~~~i~~~~~G~l~dr~Gr 112 (485)
.............++.+..+++ .+..++..+.+.++.. .+. .+.+|+.+.+.++..+++++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666677777777876 6677788888777532 222 345999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 011470 113 KGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG 192 (485)
Q Consensus 113 r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 192 (485)
|+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccc-----cchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCC-CcchHHHHHHHHHHHh--hccc
Q 011470 193 LFV-----PWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGF-DTDISIEVNEIKRSVA--SSSR 264 (485)
Q Consensus 193 ~~l-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 264 (485)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.++.+++. +.+...+.++.+.... ....
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 776 6999999988888887767999999999999999999999999999984 3444444444431111 1111
Q ss_pred cchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCch-hhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011470 265 RTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSS-DVATLGLGALQVIATGVTTWLADKAGR 343 (485)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~ 343 (485)
..+..+++++++...++..+...+..+.++++.+...+|.+.+++..|.+.. .......++..+++..++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222466777767788889999999999999999999999999999998766 566667788889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHH
Q 011470 344 RALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSV 423 (485)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (485)
|+.++.+...+.++.++++........... ......+..+....++...++.+..++.|.+.+|.+|.+.|+.+.++
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPN---SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCC---cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHH
Confidence 999999999999999998887665433110 12234466777888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHhhh
Q 011470 424 ATLANWLTVWLITMTANLLLNWSG-GGTFAIYTVVSAFTVA-FVSIWVPETKGKTLEEIQRSL 484 (485)
Q Consensus 424 ~~~~~~~g~~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 484 (485)
....++..+.+....+....+... ...+..+.+++.+... +.++++||+|+++.+|+++.+
T Consensus 436 ~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 436 AVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 999999999888777777766544 6677778877777777 788999999999999998765
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=319.58 Aligned_cols=433 Identities=35% Similarity=0.597 Sum_probs=320.1
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCC--------chhhhHHHHHHHHHHHHHHHhHHHHHhhhchh
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELT--------LSEFSLFASLSNVGAMVGAITSGQISEYIGRK 113 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr 113 (485)
..++.+...+++.++.+...++....++.+|.+.++++.+ ..+.+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3345555566677777888999999999999999998877 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 114 GSLMIAAIPNIIGWLAISFAR---ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
++++++.++++++.+++.+.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999996653 45689999999999999999999999999999999999999999999999999999
Q ss_pred hh---cc----ccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHH---HHHHh
Q 011470 191 LG---LF----VPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEI---KRSVA 260 (485)
Q Consensus 191 ~~---~~----l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 260 (485)
++ .. .+||+.|++.++..++.++..+++||+|++...+++.++..+..++....+.......+.. .....
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 43 3899999997777777777778899999887777776665555554443332221111110 11111
Q ss_pred hccccchhhhHHhhhcc--cchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHH
Q 011470 261 SSSRRTTIRFSELKQRR--YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTW 336 (485)
Q Consensus 261 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~ 336 (485)
.+.+..+..++++++.. ..++.++...+..+..........++.|.+.++.|++... .......++.+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111233333321 2344555555666655555667778889998888887744 4455567888999999999
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccc
Q 011470 337 LADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINI 416 (485)
Q Consensus 337 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (485)
+.||++||+.+..+..+.+++.+++........... + .......+....++..+++.+..+....+..|.+|++.
T Consensus 342 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (481)
T TIGR00879 342 LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS---S--KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416 (481)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc---c--cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence 999999999988887777766666553222111100 0 00012333444455566666667777788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011470 417 KGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479 (485)
Q Consensus 417 ~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (485)
|+++.|+.+...++|++++|.+.+.+.+. +....+.+.++++++..++.+++.+|+++++.+|
T Consensus 417 ~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 99999999999999999999999999884 4455566777777777777777778888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=292.17 Aligned_cols=400 Identities=15% Similarity=0.131 Sum_probs=297.6
Q ss_pred ccchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHH
Q 011470 40 RDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 119 (485)
+.-+++++.++..+.+++...++.+..++.+.|.+.+|.++|.+|.|++.+++.++|.++.++.|.++||.++|+.+.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 34456677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh--ccc--
Q 011470 120 AIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG--LFV-- 195 (485)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l-- 195 (485)
+++.++.+++++++++.+.+.+..+++|..+|...|++...+..|++++|||+..++++++.++|..+.|++. +.+
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877 444
Q ss_pred --cchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccc-hhhhH
Q 011470 196 --PWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRT-TIRFS 271 (485)
Q Consensus 196 --~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 271 (485)
+||..|++.++..++ .++.++..+|+|+..--.+ .++. .++..+..+++++.+ ...++
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~~-----------------~~d~~e~~~~~~~~~~ls~~~ 242 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEEY-----------------RGDPLEIYEEEKENEGLTAWQ 242 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHHh-----------------hcCchhhhhhhccCCCccHHH
Confidence 899999996665554 7788888899985321111 1110 000011101111111 22233
Q ss_pred HhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHh--cchhH
Q 011470 272 ELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKA--GRRAL 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~ 346 (485)
.+++.-..++.+|.+++...+.+..-+++..|.|.|+.+. |++... .....+-.++++|++++||++||+ |||.+
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 3334444555688888888888888899999999998764 777555 666677899999999999999997 56665
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH
Q 011470 347 LIISSVGMTV-SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT 425 (485)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 425 (485)
..+.+.+... +.+.+... . . ...++..+++++++ ++-.+...+.-..+.|..|++..|++.|+..
T Consensus 323 ~~~i~~~~i~~~~~~~w~~---~-~---------~~~~l~~~~l~~iG-f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~G 388 (448)
T COG2271 323 MALIFMLLITASLVLYWLA---P-N---------GSYLLDAILLFIIG-FLIYGPQMLIGLAAAEFVPKKAAGTATGFVG 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHcC---C-C---------ccHHHHHHHHHHHH-HHHhhHHHHHHHHHhccccHhhccchhchhh
Confidence 5433332222 22222111 0 0 00122222222222 2222333334478899999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhccc
Q 011470 426 LANWL-TVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 426 ~~~~~-g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+.++ |...+....|++.|. +....+.++.+.+++..++.....+.
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 888999999999885 55556666666666665555554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=316.22 Aligned_cols=390 Identities=21% Similarity=0.276 Sum_probs=287.2
Q ss_pred hhHHHHHhhhCCC---chhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011470 69 PTQTAITRDLELT---LSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLL 145 (485)
Q Consensus 69 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l 145 (485)
+..|.+.+|+|++ ..+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-cchhHHHhhHHHHHHHHHHhhccCCchhH
Q 011470 146 EGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-PWRILAVLGILPCTILITGLFFIPESPRW 224 (485)
Q Consensus 146 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 224 (485)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998776 79999999877777766666889999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcchHH-HHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHh
Q 011470 225 LAKMGMTEDFEASLQVLRGFDTDISI-EVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFY 303 (485)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (485)
+..+++.+++.+.+++..+.+..... +..+.....+.+++.++...+++++++..+...+.....++.....+ +.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~ 345 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY----YG 345 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH----HH
Confidence 99999999888887776544332111 11111101111111123456777776655555444444333222111 22
Q ss_pred HHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHH
Q 011470 304 SSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDI 383 (485)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (485)
.+.+....+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++.+++...... ..+
T Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~-------------~~~ 411 (505)
T TIGR00898 346 LVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD-------------LYF 411 (505)
T ss_pred HhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC-------------chH
Confidence 22223333433 2244445577888999999999999999999988887777776655543110 001
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011470 384 FSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVA 463 (485)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 463 (485)
.......+..++.+ ...+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ +.+.+....+.+++++.++..+
T Consensus 412 ~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 412 LRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 11222222222222 223445689999999999999999999999999999999999 5555555566666665555544
Q ss_pred HHHHhcccCCCCCHHH
Q 011470 464 FVSIWVPETKGKTLEE 479 (485)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (485)
+ .+++||+++++++|
T Consensus 490 ~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 490 L-TLFLPETKGVPLPE 504 (505)
T ss_pred H-HHcCcCCCCCCCCC
Confidence 4 45678998877654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=306.08 Aligned_cols=388 Identities=17% Similarity=0.180 Sum_probs=262.9
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchh-hhH-----HHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSE-FSL-----FASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
.+....++++++++|...++...|.+.++++.+.++ .++ +.++.++++.+++++.|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456677888999999999999999999999754432 222 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHH--------HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh--
Q 011470 123 NIIGWLAISFARESSF--------LYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG-- 192 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-- 192 (485)
++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 899999999999999999999999999999999999999988888887776443
Q ss_pred --c--------cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 011470 193 --L--------FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASS 262 (485)
Q Consensus 193 --~--------~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (485)
. ..|||+.|++++++.++.++....+||+|++...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 2 2389999999877666666666788999987543221111000 000
Q ss_pred cccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 263 SRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
.++++.++++++++ .++........ .+.....++.+..|.|.++++ .|++... .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122235555543 22222222222 222233455666788888754 5776554 3344456778889999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh
Q 011470 340 KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (485)
|+|||+.+..+.+...+....+........ ........++.+.+.+..... ...+..|.+|++.|++
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~~~~~g~-~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILINSNV------------IGLIFAGLLMLAVILNCFTGV-MASTLPAMFPTHIRYS 378 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCccchH
Confidence 999999887766543333222111111000 011222222333333222222 3467788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 420 AGSVATLANWLTVWLITMTANLLLNWSG-GG-TFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~i~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
+.|+.+.....++.++|.+.+++.+..+ +. ...+..+.+ +..++..++.||++++
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-VIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-HHHHHHHHHhccccCC
Confidence 9998766677888899999999887433 22 233333333 3333444556776543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=277.61 Aligned_cols=365 Identities=18% Similarity=0.187 Sum_probs=268.3
Q ss_pred HHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII 125 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~ 125 (485)
.+..++.+.++.|..+.+...+..++|++.+|+|+|..+.|++.|.|.+++.++.++...+.||+.||++++..+.++.+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34456667777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHH
Q 011470 126 GWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILA 201 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f 201 (485)
+++++++++||+.++++|++.|+..|.+++...++..+..|++||++++++...+..++.++|.+++.++ |||..|
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887776655 899999
Q ss_pred HhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccch
Q 011470 202 VLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF 280 (485)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
++.+...++ .+..+..+| |+... ++.+.+..+..+.++++..+
T Consensus 171 ~~ia~l~ll~~~~~~~~lP--~~~~~----------------------------------~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP--PSEIS----------------------------------GSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC--CccCC----------------------------------CCCCcchhHHHHHhcCchHH
Confidence 996666655 666677788 21000 00111111123334444322
Q ss_pred hHHHHHHHHHHHhhcchh-hHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 281 PLTVGIGLLILQQLSGIN-GVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
...+..+..+.+.+ .++|..|.+.+..|++... .....+++++++|+.++|++.|| +.|+.+.....+.++.
T Consensus 215 ----~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 215 ----LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALA 289 (394)
T ss_pred ----HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHH
Confidence 22222233333344 4445556665666887766 67778899999999999999999 8888887776776666
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
.+.+.+.... .+..+...++.++......... .....+. -++.++.+.+++....++|..+|..
T Consensus 290 ~l~l~~~~~~--------------~~~~~~~~~~wg~a~~~~~~~~-~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~ 353 (394)
T COG2814 290 LLALTFTGAS--------------PALALALLFLWGFAFSPALQGL-QTRLARL-APDAADLAGSLNVAAFNLGIALGAA 353 (394)
T ss_pred HHHHHHhcch--------------HHHHHHHHHHHHHHhhhhhhHH-HHHhccc-CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6665543211 1222333333222222222122 2444443 3588999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 011470 438 TANLLLNWSGGGTFAIYTVVSAFTVAFVSI 467 (485)
Q Consensus 438 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (485)
+.|.+.|..+.......+.+..+..+...+
T Consensus 354 lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 354 LGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 999999965444444444444444443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=302.78 Aligned_cols=371 Identities=14% Similarity=0.074 Sum_probs=255.0
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
..+..+.++.++.++++..++++..+++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 34445666777888888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-
Q 011470 122 PNIIGWLAISF-----ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV- 195 (485)
Q Consensus 122 l~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l- 195 (485)
+++++.++.++ ++|++.+++.|+++|++.+...|...+++.||+|+++|+++++++..+.++|.++++++...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88887777665 589999999999999999999999999999999999999999999999999999988776422
Q ss_pred ------cchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchh
Q 011470 196 ------PWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI 268 (485)
Q Consensus 196 ------~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (485)
+||..|.+.++..++ .++.+++.+|+|+.....+ .++ . ... ....+ ++..+.++.....
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~---~~~~~----~~~~~~~~~~~~~ 248 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGE---PISEE----DKETESTDMTKWQ 248 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccC---ccchh----hhccccccCcHHH
Confidence 588888875554444 5555566677764321111 110 0 000 00000 0000000000000
Q ss_pred -hhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcch
Q 011470 269 -RFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRR 344 (485)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~ 344 (485)
..+..++++ .++...+..++..........|.|.+++ +.|++..+ .......++.+++.++.|+++||++||
T Consensus 249 ~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r 324 (467)
T PRK09556 249 IFVEYVLKNP----VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR 324 (467)
T ss_pred HHHHHHHcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 011123333 2444444444444445567788888775 46887665 444456778899999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH
Q 011470 345 ALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA 424 (485)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 424 (485)
+.+........++...+... .... .....+..++.+... .+..........|.+|++.+|++.|+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~ 390 (467)
T PRK09556 325 RALVACIALALIIFTLGVYQ--HATS-----------EYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIK 390 (467)
T ss_pred chHHHHHHHHHHHHHHHHHH--hcCc-----------HHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 87665443333322221111 1000 111222222222211 111112225667999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHH
Q 011470 425 TLANWL-TVWLITMTANLLLN 444 (485)
Q Consensus 425 ~~~~~~-g~~~~~~i~g~~~~ 444 (485)
+...++ |++++|.+.|.+.|
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhc
Confidence 999997 77999999999999
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=296.62 Aligned_cols=397 Identities=15% Similarity=0.112 Sum_probs=265.8
Q ss_pred HHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII 125 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~ 125 (485)
++.+....+++++...++...++..+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 34455556677777778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHH
Q 011470 126 GWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILA 201 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f 201 (485)
+.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+ +||+.|
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877655 899999
Q ss_pred HhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc-ccc
Q 011470 202 VLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR-RYY 279 (485)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 279 (485)
++.++..++ .++..+++||+|++...+...++..+ . .+ . .++.++++.+.++.+++ ...
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~---~~---~--~~~~~~~~~~~~~~~~~~~~~ 241 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------A---LE---L--AQQQEGAGLSRKEILTKYVLL 241 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------c---cc---c--chhccccCCChhhhHHHHHhc
Confidence 986655443 44555667887754211110000000 0 00 0 00000001112221111 111
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHh--cchhHH-HHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKA--GRRALL-IISSVG 353 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~-~~~~~~ 353 (485)
.+.++.+.+..+........+..|.|.+++ +.|++..+ .......+++++++++.|+++||+ ++|+.. ......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~ 321 (434)
T PRK11663 242 NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAG 321 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHH
Confidence 122333333333333345566678888874 46887665 445566788999999999999998 333332 222112
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
..+....+.... . . .........+..+. +..+..........|.+|++.|+++.|+.+...++|++
T Consensus 322 ~~~~~~~~~~~~--~-~----------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 387 (434)
T PRK11663 322 ILLSVGSLWLMP--F-A----------SYVMQAACFFTIGF-FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA 387 (434)
T ss_pred HHHHHHHHHHcc--c-c----------cHHHHHHHHHHHHH-HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH
Confidence 221211111110 0 0 00111111111111 11111222235678999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 434 LITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 434 ~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
++|.+.|.+.|. +....+...+++.++..+..+...++++++
T Consensus 388 ~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 388 LSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999994 444445555555555555555555555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=294.79 Aligned_cols=377 Identities=15% Similarity=0.148 Sum_probs=262.5
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
.+|....++++.++.+++|+...+...|.+.+|+|++..+.|++.+++.+++++++++.|+++||+|||+++..++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 34556777777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc----------
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF---------- 194 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---------- 194 (485)
++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++.
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888653
Q ss_pred ccchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHh
Q 011470 195 VPWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSEL 273 (485)
Q Consensus 195 l~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
.+||+.|++.+++.++ .++.++++||+|+.... -.+++.+...+.......+. ++.++..+++....+..++++
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTL----EQPEGAFAHAAMPQRSMLREI 239 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccccc----cccccccccccccHHHHHHHh
Confidence 3899999996666554 55666778998842100 00111111111111000000 000000000000011123333
Q ss_pred hhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc--CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHH-H
Q 011470 274 KQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA--GITSSD--VATLGLGALQVIATGVTTWLADKAGRRALL-I 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~ 348 (485)
++ +..+...+.+++.......+..|.|.++++. +.+... .......++.+++.++.|+++||+++|+.. .
T Consensus 240 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~ 314 (412)
T TIGR02332 240 FT-----PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTA 314 (412)
T ss_pred cC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHH
Confidence 32 2244444555555555677888999999875 444433 445666888999999999999999977643 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHH
Q 011470 349 ISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLAN 428 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 428 (485)
.......++. .+... .. . . ...+....+...+.. ...+..+....|.+|++.|+++.|+.+...
T Consensus 315 ~~~~~~~~~~-~~~~~--~~-~----------~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~ 378 (412)
T TIGR02332 315 LPYLFAAAGW-LLASA--TD-H----------N-LIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATG 378 (412)
T ss_pred HHHHHHHHHH-HHHHh--cC-C----------H-HHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhh
Confidence 3333333322 11111 00 0 0 111111111111111 112333456678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 011470 429 WLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 429 ~~g~~~~~~i~g~~~~~~~ 447 (485)
++|++++|.+.|.+.|..+
T Consensus 379 ~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 379 NIGSALSPFLIGILKDATG 397 (412)
T ss_pred hhhhhhhhhhcccccccCC
Confidence 9999999999999999543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=288.85 Aligned_cols=375 Identities=17% Similarity=0.134 Sum_probs=246.8
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhC---CCchhhhHHHHHH---HHHHHHHHHhHHHHHhhhchhHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLE---LTLSEFSLFASLS---NVGAMVGAITSGQISEYIGRKGSLMI 118 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s~~---~~~~~i~~~~~G~l~dr~Grr~~~~~ 118 (485)
+++..+...+++++.+++|...++...|.+.+|++ .+..+.+...+.+ +++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34556667778888999999999999999999985 5555554444444 45555999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 119 AAIPNIIGWLAISFARESS--------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
+.++++++++++++++++. .+++.|+++|++.|...+...+++.|++|+++|+++.++...+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 58999999999999999999999999999999999999998888888877765
Q ss_pred hhc------------cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 011470 191 LGL------------FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRS 258 (485)
Q Consensus 191 ~~~------------~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (485)
+.. ..|||+.|++++++.++.+.....+||+|++..++
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------------------------------ 228 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------------------------------ 228 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------------------------------
Confidence 432 34899999998877776666666678876421000
Q ss_pred HhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHH
Q 011470 259 VASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTT 335 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g 335 (485)
. ++..+++++++++..+ .......+.....++.+..|.|.++++ .|.+..+ .......+...++.++.|
T Consensus 229 -~----~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 229 -L----KEAGSLKGLWRNRRAF---IMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred -h----cccccHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011344555433211 111111222222345566777877754 5877655 333444566678888899
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc
Q 011470 336 WLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN 415 (485)
Q Consensus 336 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (485)
+++||++||+.+....++..+....+......... ....+....+.....+. ..+..+.+..|.+|++
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS-----------PYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQ 368 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Confidence 99999999988766555433322211111100000 01111111111111111 1233457889999999
Q ss_pred chhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 011470 416 IKGLAGSVATLANWL-TVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWV 469 (485)
Q Consensus 416 ~~~~~~g~~~~~~~~-g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
.|+++.|+.+...+. .+...|.+.+.+.+.+.+....++.+...+..++..+++
T Consensus 369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 369 VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887665 344578878865444434333343333333333333333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=290.17 Aligned_cols=358 Identities=17% Similarity=0.200 Sum_probs=266.8
Q ss_pred hhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 43 SISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
.++.|.++.++.+..+.++++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 34777788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cch
Q 011470 123 NIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWR 198 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr 198 (485)
.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.++..+ +||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887544 799
Q ss_pred hHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcc
Q 011470 199 ILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRR 277 (485)
Q Consensus 199 ~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
+.|++.++..++ .++...++||+|++..++++.++. +...+..++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~ 217 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------------------APVLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------------------hhhHHHHhhhh
Confidence 999886554444 445566789987543221111000 00001111111
Q ss_pred cchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 011470 278 YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMT 355 (485)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 355 (485)
..+. ........+...........+.|.+.++.|.+... .......++.+++.++.|++.||++||+.+..+.+...
T Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (406)
T PRK11551 218 RATA-TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL 296 (406)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1011 11111222222223445566788888888887655 55556678889999999999999999998877655555
Q ss_pred HHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHH
Q 011470 356 VSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLI 435 (485)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 435 (485)
++.+.+... .. .+...+..++.+.+.. +..+....+..|.+|++.|+++.|+.+...++|..++
T Consensus 297 ~~~~~~~~~---~~------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g 360 (406)
T PRK11551 297 ASLAALAAA---PS------------FAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAG 360 (406)
T ss_pred HHHHHHHhc---Cc------------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHH
Confidence 544433321 00 0112222222232222 3344556888999999999999999999999999999
Q ss_pred HHHHHHHHHhhcch
Q 011470 436 TMTANLLLNWSGGG 449 (485)
Q Consensus 436 ~~i~g~~~~~~~~~ 449 (485)
|.+.|.+.+..+..
T Consensus 361 ~~~~g~l~~~~~~~ 374 (406)
T PRK11551 361 PLLAGQLLALGRST 374 (406)
T ss_pred hhhHhhhhccCCch
Confidence 99999999854433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=289.90 Aligned_cols=364 Identities=18% Similarity=0.153 Sum_probs=262.7
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
.++..+..+.++++.++++.....+..|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44445667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc----ccchhH
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF----VPWRIL 200 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l~wr~~ 200 (485)
++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+.++|.++++.+... .+||+.
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654 389999
Q ss_pred HHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccch
Q 011470 201 AVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF 280 (485)
Q Consensus 201 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
|++..+..++.+......||++++..++.+. .+++ .+...+..+..++++++++..+
T Consensus 175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKH-----------SQSAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccc-----------cccchhhhhHHHHHHHhhchHH
Confidence 9886555444433333456654332111000 0000 0000001112345556555443
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 358 (485)
......... +..+.....+..+.|.+.++.|.++.. .......++.++++++.+++.||++||+.+..+.+...+..
T Consensus 232 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 232 LTLCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 333222222 222222334566778888888887655 34455678889999999999999999998887766655544
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHH-hcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTF-SLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
+.+... ... .........++.++ ..+..+....++.|.+|++.||+++|+.+...++++.++|.
T Consensus 311 ~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 311 FPLFRI---PQD------------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred HHHHHH---ccc------------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHH
Confidence 333221 000 01111122222222 22233344477889999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 011470 438 TANLLLNWSG 447 (485)
Q Consensus 438 i~g~~~~~~~ 447 (485)
+.|++.+..+
T Consensus 376 ~~g~l~~~~g 385 (426)
T PRK12307 376 AATWLGITMG 385 (426)
T ss_pred HHHHHHHccc
Confidence 9999998544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=285.11 Aligned_cols=377 Identities=18% Similarity=0.162 Sum_probs=264.5
Q ss_pred hhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 43 SISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
++++|.....+.++++.++++....+++.|.+++++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34566777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c--
Q 011470 123 NIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P-- 196 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-- 196 (485)
.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+ +
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887654 4
Q ss_pred chhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc
Q 011470 197 WRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276 (485)
Q Consensus 197 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
||+.|++.++..++.++....+||++++..++++.++..+..++..+..+..+ ...++.....+.. .
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~ 233 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA-----------NIVMTLAAAMVQS--A 233 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-----------hhhhhhhHHhhhh--h
Confidence 99999987776666666667788887554332221111111111110000000 0000000001110 1
Q ss_pred ccchhHHHHHHHHHHHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 011470 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVG 353 (485)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 353 (485)
+..+......................+.|.+. ++.|.+..+ .......++.+++.++.+++.||++||+.+..+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 313 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA 313 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 11111111111111111112223444555555 456877665 444556788899999999999999999988776654
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
..+........ ... .+...+...+.+... .+..+....++.|.+|++.|+++.|+.+...++|+.
T Consensus 314 ~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 378 (405)
T TIGR00891 314 GQLLIIPVFAI---GAN-----------VAVLGLGLFFQQMLV-QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA 378 (405)
T ss_pred HHHHHHHHHHh---CCc-----------hHHHHHHHHHHHHHH-ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH
Confidence 43222221111 100 111122222222222 233344457889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 011470 434 LITMTANLLLNWSG 447 (485)
Q Consensus 434 ~~~~i~g~~~~~~~ 447 (485)
++|.+.|.+.|..+
T Consensus 379 ~g~~~~g~l~~~~g 392 (405)
T TIGR00891 379 LAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=279.61 Aligned_cols=362 Identities=13% Similarity=0.105 Sum_probs=249.9
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA 129 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~ 129 (485)
+..+.++.+....+.....+.+|.+.+|+|.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.++++++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 90 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVL 90 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 33333333333344445566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH
Q 011470 130 ISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI 205 (485)
Q Consensus 130 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~ 205 (485)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ +||+.|++.+
T Consensus 91 ~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 91 SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887654 8999999976
Q ss_pred HHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHH
Q 011470 206 LPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTV 284 (485)
Q Consensus 206 ~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (485)
+..++ .+..+..+||.|+. +. +.....++.++++..+....
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~-----~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 212 (390)
T PRK03545 171 GGALITLLLLIKLLPLLPSE-----HS---------------------------------GSLKSLPLLFRRPALVSLYL 212 (390)
T ss_pred HHHHHHHHHHHHhCCCCCCC-----Cc---------------------------------chHHHHHHHHhCcHHHHHHH
Confidence 65554 34444556665420 00 00011233444443222222
Q ss_pred HHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 285 GIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
....... .......+.+.+.++ .|.+... ......+++.++++++.+++.||+++|.. ..+.....++...+
T Consensus 213 ~~~~~~~----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l 287 (390)
T PRK03545 213 LTVVVVT----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHH
Confidence 2111111 122233344444444 5776655 44455678889999999999999998764 33433333333222
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
... .. ..+...+...+.+.+.. ...+.....+.+..| +.+++++|+.+...++|..+||.+.|.
T Consensus 288 ~~~--~~------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~ 351 (390)
T PRK03545 288 LPA--AN------------SEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ 351 (390)
T ss_pred HHH--hc------------hHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 00 01222233333333332 223333466777766 688999999999999999999999999
Q ss_pred HHH-hhcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 442 LLN-WSGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 442 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
+.| .+....+...+++.++..++.+...+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 352 VSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999 44445555555555555555554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=346.68 Aligned_cols=423 Identities=36% Similarity=0.584 Sum_probs=329.2
Q ss_pred hhhhccccccccccchhHHHHH--hhhCCCc---------hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 54 ALGPIQFGFTCGYSSPTQTAIT--RDLELTL---------SEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~---------~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
.++.+..++|....+...+... .+++.+. .+.++..+...+|..+|+++.|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455777888888777766554 2232222 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----
Q 011470 123 NIIGWLAISFAR---ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---- 195 (485)
Q Consensus 123 ~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---- 195 (485)
..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+....+|..++..++...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999998888776543
Q ss_pred c---chhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHH
Q 011470 196 P---WRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSE 272 (485)
Q Consensus 196 ~---wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (485)
+ ||+.+++..++.++.++...++||||+|+..++|.+|+++.+++.++.+.+.++. ++..++.++.+ +.+..+++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKESQ-ESKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-ccccccccccc-ccceeeee
Confidence 4 9999999998888877788899999999999999999999988865543222211 11111111111 11155666
Q ss_pred hhhccc-chhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 011470 273 LKQRRY-YFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISS 351 (485)
Q Consensus 273 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 351 (485)
+++++. .++....+.+..+....+.....++.+.+.++.+.+..........+..+++.+++.++.||+|||+.++.+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 776643 4555666666666666677777888888888888876644455556777888888889999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHH
Q 011470 352 VGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLT 431 (485)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (485)
..++++.+.+......... + + .+.....+....++...++.++.+..+.+..|.+|++.|+++.|+....++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~ 397 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVS-S-S----SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG 397 (451)
T ss_pred ccccccccccccccccccc-c-c----cccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 8877777666511111000 0 0 01112333444455566777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhh
Q 011470 432 VWLITMTANLLLNWSG-GGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQRSL 484 (485)
Q Consensus 432 ~~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
++++|.+.+.+.+..+ ...+.++++++.+..++.++++||+++++++|++++|
T Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999999988887443 6778888888888888889999999999999999986
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=258.08 Aligned_cols=416 Identities=16% Similarity=0.161 Sum_probs=313.8
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
..+.++........++..+.+..-..+-+.|.+.+.+|.+..+..++....+.+..+++..+|.++|++|||+.+.+...
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 45677777788888888777777777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc----ccc
Q 011470 122 PNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF----VPW 197 (485)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l~w 197 (485)
..++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....+... +||
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999 899999999999999998776666 7788888877666544 499
Q ss_pred hhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcch------------HHH--HHHHHHHHhhcc
Q 011470 198 RILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDI------------SIE--VNEIKRSVASSS 263 (485)
Q Consensus 198 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~ 263 (485)
||.......+..+.....+++||+||+...+++++++.+.++++.+.|... +.+ ..+..+...+..
T Consensus 230 r~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ 309 (528)
T KOG0253|consen 230 RYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAA 309 (528)
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccc
Confidence 999888778877888888899999999999999999999999998766531 001 111111112223
Q ss_pred ccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcC--------------------CC-chh-hHHH
Q 011470 264 RRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAG--------------------IT-SSD-VATL 321 (485)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~-~~~-~~~~ 321 (485)
++.+.+...++.++..+..+...... +.+-..+++.......+.+... .+ ... .-..
T Consensus 310 ke~rg~~~nLlsp~lrkttlllw~iw-fgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdll 388 (528)
T KOG0253|consen 310 KEVRGGTTNLLSPKLRKTTLLLWRIW-FGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLL 388 (528)
T ss_pred cccccchHhhcChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHH
Confidence 34455566677665555444433333 3332233444333333333211 01 111 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Q 011470 322 GLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMG 401 (485)
Q Consensus 322 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (485)
...+..+.|.++.+++.||+|||+.+..+.+.+.+..+++....... ......+..-++.+.++
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---------------~~tvllf~arafisg~f- 452 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---------------AYTVLLFTARAFISGAF- 452 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---------------hhHHHHHHHHHHHhchh-
Confidence 55788899999999999999999999998888877776665432111 11222333333333333
Q ss_pred cchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 011470 402 PIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTL 477 (485)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (485)
.+.|.|..|++|+..|+++.|.....+++|+++.|.++ ...+...+.+..++.+++++..+..+++--|+|+|+.
T Consensus 453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 34469999999999999999999999999999999999 5555666677888888888888888888889999864
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=277.57 Aligned_cols=381 Identities=18% Similarity=0.182 Sum_probs=252.5
Q ss_pred HHHHHHHhhhhccccccccccchhHHH-HHhhh--CCCchhhhHHH-----HHHHHHHHHHHHhHHHHHhhhchhHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTA-ITRDL--ELTLSEFSLFA-----SLSNVGAMVGAITSGQISEYIGRKGSLMI 118 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~i~~~~~G~l~dr~Grr~~~~~ 118 (485)
+.......++++.+++|...++.+.|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||++++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 345667777888999999998888775 56666 67766 45553 34567778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 119 AAIPNIIGWLAISFARESS--------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
+.++++++++++++++|++ .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 58899999999999999999999999999999999999999999999988865
Q ss_pred hhc------------cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 011470 191 LGL------------FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRS 258 (485)
Q Consensus 191 ~~~------------~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (485)
+.. ..+||+.|++.+++.++.+......||+|++..++++.++
T Consensus 180 ~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------------- 234 (438)
T PRK09952 180 LVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------------- 234 (438)
T ss_pred HHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-------------------------
Confidence 432 2489999999877766655555667888765322211000
Q ss_pred HhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHH
Q 011470 259 VASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTT 335 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g 335 (485)
.+++....+.+++++..+ .......+......+....|.|.+.+ +.|.+... ......++..+++.++.|
T Consensus 235 ----~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 235 ----AKKRIPVIEALLRHPGAF---LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred ----ccccCCHHHHHHHchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111223222111 11111122222234445566676664 45776554 223344667788889999
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc
Q 011470 336 WLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN 415 (485)
Q Consensus 336 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (485)
+++||++||+.+..+.++..++...+........ .....+....+.+.+.+.. .+..+++..|.+|++
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~ 375 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQS-----------IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGAS 375 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcc
Confidence 9999999999887776555443332222111110 0111122222222333222 334458899999999
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHHHhh-c-chhHHHHHHHHHHHHHHHHHhcccC
Q 011470 416 IKGLAGSVATLAN-WLTVWLITMTANLLLNWS-G-GGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 416 ~~~~~~g~~~~~~-~~g~~~~~~i~g~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
.|+++.|+.+... .+++.++|.+.+++.+.. + +.....+..++.+...+..+..+++
T Consensus 376 ~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 376 YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999976554 489999999999998832 2 2333333334444444444555553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=275.97 Aligned_cols=369 Identities=14% Similarity=0.105 Sum_probs=256.8
Q ss_pred HHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII 125 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~ 125 (485)
.|.+...++++.+..... ...++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 344555555554443333 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhH
Q 011470 126 GWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRIL 200 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~ 200 (485)
+.+++++++|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++..+ +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999997 7899999999888777777777666543 79988
Q ss_pred HHhhHHHHHHHHHHhhcc-CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccc
Q 011470 201 AVLGILPCTILITGLFFI-PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYY 279 (485)
Q Consensus 201 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
+.+.++..++.++.++.. ++.|+. + ++++ . ...+.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------------------------~~~~---~-~~~~~l~~~~- 206 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSAREVAS-------S---------------------------HKTT---T-TPVRVVFTPR- 206 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc-------c---------------------------cCCC---c-CCcccccCHh-
Confidence 766444443333333222 222210 0 0000 0 0111112221
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
.+...+..+.....+.....+.|.+.++.|.+... ......+++.++++++.+++.||++||+....+..+..++
T Consensus 207 ---~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 207 ---AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 22222223333334556777888888888887665 5556678899999999999999999999888877666665
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccC-CccchhhHHHHHHHHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEIL-PINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
..++.... .. . .. ....+.+.+.+... +.......+.. |++.+++..|+.+...++++.++|
T Consensus 284 ~~~~~~~~---~~----------~-~~--~~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp 346 (393)
T PRK09705 284 FCGFIWLP---LQ----------L-PV--LWAMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAP 346 (393)
T ss_pred HHHHHHcc---ch----------H-HH--HHHHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443210 00 0 11 11122333333332 33334455555 467899999999999999999999
Q ss_pred HHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 437 MTANLLLNWSG-GG-TFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 437 ~i~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
.+.|++.|..+ +. .+.+...++++..+..+.+.+|++.+
T Consensus 347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 347 WFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999543 33 34444555555555556666776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=273.22 Aligned_cols=348 Identities=14% Similarity=0.114 Sum_probs=237.1
Q ss_pred ccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011470 62 FTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYM 141 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (485)
.....+++.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.+++
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA 84 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999876665555454433333479999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH-HHHHHHHhh
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP-CTILITGLF 216 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~-~~~~~~~~~ 216 (485)
.|+++|++.+. .+.....+.|++|+++|++++++...+..+|.+++++++..+ +||+.|++.+++ .+..++.++
T Consensus 85 ~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 85 CQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 466666779999999999999999999999999998887766 999999985544 444666777
Q ss_pred ccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcc
Q 011470 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSG 296 (485)
Q Consensus 217 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (485)
++||+|++..++ .+ . + + ....++++++++. .+...+..++....
T Consensus 164 ~lp~~p~~~~~~--~~---------------~----~---~--------~~~~~~~ll~~~~----~~~~~~~~~~~~~~ 207 (368)
T TIGR00903 164 ALPALPFQAAEG--FG---------------F----K---D--------AVKEFGALAGRKD----LWIIGAILGFGVAL 207 (368)
T ss_pred HcCCCCCCCCCC--cc---------------h----H---H--------HHHHHHHHHcChh----HHHHHHHHHHHHHH
Confidence 889987542100 00 0 0 0 0012445555544 34444455555556
Q ss_pred hhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHH-HHHHHHHHHHHHHHHHHhhcccC
Q 011470 297 INGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRR---ALLII-SSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
.+.+..|.|.++++.|++... .....+....+.+..++++||..|| +.... .....++....+... .+
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---~~--- 279 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE---LN--- 279 (368)
T ss_pred HHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cc---
Confidence 777888999999888876532 2223333344445567888887543 22222 222222222222111 00
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFA 452 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~ 452 (485)
....+....+.+ ++.....+..+++.+|.+|++.|+++.|+.+...++++..+|.+.+.+.. +....+.
T Consensus 280 ---------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~ 348 (368)
T TIGR00903 280 ---------RLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFT 348 (368)
T ss_pred ---------cHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 011122222222 22223334456899999999999999999999999999999999988774 3344566
Q ss_pred HHHHHHHHHHHHH
Q 011470 453 IYTVVSAFTVAFV 465 (485)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (485)
.+++..++..+..
T Consensus 349 ~~~~~~~i~~~~~ 361 (368)
T TIGR00903 349 FLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=277.21 Aligned_cols=384 Identities=21% Similarity=0.257 Sum_probs=246.7
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHH-HHH-----HHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFA-SLS-----NVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
....++++.+.+++|+..+++..|.+.+|++.++.+.+... +.. .++..+++++.|+++||+|||++++.+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 57778889999999999999999999999999888765443 322 233357899999999999999999999999
Q ss_pred HHHHHHHHHHhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 011470 123 NIIGWLAISFARESS--------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF 194 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 194 (485)
+++++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 468999999999999999999999999999999999999888777776666555432
Q ss_pred ------------ccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 011470 195 ------------VPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASS 262 (485)
Q Consensus 195 ------------l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (485)
.+||+.|++.++...+........||++++..++ +
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~---------------------------------~ 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK---------------------------------H 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh---------------------------------h
Confidence 4899999986544333333333344432211000 0
Q ss_pred cccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 263 SRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
+.+.+..++...+++ +.........+...........|.|.++++ .|++..+ .......++++++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111111 111111222222333455677888888876 5887665 4444567788899999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh
Q 011470 340 KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (485)
|++||+....+.....+...... ....... .. ........+.+.+++. ..+..+.+..|.+|++.|++
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~ 367 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPAL-SWLVAAP---------SF-ARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTA 367 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHH-HHHHcCC---------ch-HHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccch
Confidence 99999987765444332211111 1000100 00 1111112222233332 23334478899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 011470 420 AGSVATLANW-LTVWLITMTANLLLNWSGG-GTFAIYTVVSAFTVAFVSIWVPETKGKTLEEI 480 (485)
Q Consensus 420 ~~g~~~~~~~-~g~~~~~~i~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (485)
+.|+.+.... +++.++|.+.|++.|..+. +....+...+.+..++..+..+|.++.+++..
T Consensus 368 ~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK15075 368 GFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQAA 430 (434)
T ss_pred heeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhhh
Confidence 9999755554 4688899999999995443 22222222222333334444555555444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=279.13 Aligned_cols=400 Identities=13% Similarity=0.099 Sum_probs=254.5
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
++|.++..+++.....+.++...+...|.+.++ |+++.+.+++.+.+.+++.+++++.|+++||+|||++++++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 345555555566666666766677788999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHH-HHHHhhc----cc
Q 011470 125 IGWLAISFAR----ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIM-LAYLLGL----FV 195 (485)
Q Consensus 125 ~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~----~l 195 (485)
++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+|+++. ..
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 9999988864 7888999999999999998888888999999999999999999999998864 4554432 22
Q ss_pred cchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhh-hHHh
Q 011470 196 PWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIR-FSEL 273 (485)
Q Consensus 196 ~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 273 (485)
+||+.|++.++..++ .++..+++||+|+....+ +.++.++ +. . +..+..++++.+.+.. .+.+
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~~~ 249 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN---DY---P--------DDYNEKHEQELTAKQIFMQYV 249 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh---cc---c--------cccccccCCCccHHHHHHHHH
Confidence 899999986655444 566677788887532111 1111000 00 0 0000000000000111 1122
Q ss_pred hhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHh--cchhHHH
Q 011470 274 KQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKA--GRRALLI 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~ 348 (485)
++++. ++...+..+......+....|.|.++++ .|++... .......++.+++.++.|+++||+ +||....
T Consensus 250 ~~~~~----~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 250 LPNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 33332 3333333333333345667788888876 4776554 444556788889999999999999 4444322
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHH
Q 011470 349 I-SSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLA 427 (485)
Q Consensus 349 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 427 (485)
+ ...+..++.+.+... .... .+...+....++.... +.......+..|.+|++.+|++.|+.+..
T Consensus 326 ~~~~~l~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 391 (452)
T PRK11273 326 VFFMTLVTIATIVYWLN--PAGN-----------PTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLF 391 (452)
T ss_pred HHHHHHHHHHHHHHHHh--cccC-----------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence 2 212222222221111 0000 0111122222222211 11122235677999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011470 428 NWLTVWL-ITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479 (485)
Q Consensus 428 ~~~g~~~-~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (485)
.++|+.+ +|.+.|.+.|. +....+.+..+++++..+....+.+ .++|++||
T Consensus 392 ~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 444 (452)
T PRK11273 392 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRHHEE 444 (452)
T ss_pred HHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-cccchHHH
Confidence 9898765 79999999994 4444555555555555444444433 33333343
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=285.38 Aligned_cols=380 Identities=14% Similarity=0.089 Sum_probs=270.5
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
++|..+..++++.++..+|.++.+..+|.+.+|+|.+.++.+|+.+.|.+++.++.+++|+++||+|||++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchh
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIA-PQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRI 199 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~ 199 (485)
++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++.....++|..+||.+++.+ +|||
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 99999999999999999999999999999998888887776 678999999999999999999999998776 8999
Q ss_pred HHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHH---------HHHhC-CCcchHH-H-HH---------HHHH
Q 011470 200 LAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASL---------QVLRG-FDTDISI-E-VN---------EIKR 257 (485)
Q Consensus 200 ~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~-~-~~---------~~~~ 257 (485)
.|++.....++ .++..+++||+|+.. +++.|...... ..... ..+.... . .. ....
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99997665555 445556678765321 11111111000 00000 0000000 0 00 0000
Q ss_pred HHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHH
Q 011470 258 SVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVT 334 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~ 334 (485)
..+...+++..+ .++++++..... .+..+...........+.|.+++. .|.++.+ .......++..++.++.
T Consensus 241 ~~e~~~~~p~~~-~~lf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~ 315 (495)
T PRK14995 241 RTQLAASRPMID-MRLFTHRIILSG----VVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA 315 (495)
T ss_pred HHHhcCCCCCcC-HHHhCCcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111112222 234444433222 222222222344556677777765 5887666 55566678889999999
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCc
Q 011470 335 TWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPI 414 (485)
Q Consensus 335 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 414 (485)
|++.||+|+|+.+..+..+..++...+....... ..+......++.+.+.+....+.. ..+.+..|+
T Consensus 316 g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~ 382 (495)
T PRK14995 316 GILVSRLGLRLVATGGMALSALSFYGLAMTDFST------------QQWQAWGLMALLGFSAASALLAST-SAIMAAAPP 382 (495)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC------------chHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCH
Confidence 9999999999988877777666655544321100 011223344455555554444444 666777899
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 415 NIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 415 ~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
++++.+.++.++..++|+.+|+.+.|.+.+
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=277.42 Aligned_cols=397 Identities=17% Similarity=0.178 Sum_probs=265.0
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
+++..+..+.++.+.+.++....++.+|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44556667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhH
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRIL 200 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~ 200 (485)
++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877655 89999
Q ss_pred HHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHH------HHHHhhccccch-h-----
Q 011470 201 AVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEI------KRSVASSSRRTT-I----- 268 (485)
Q Consensus 201 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~----- 268 (485)
|++.++..++.++....+||++++..++++.++..+..+.....+.......... ............ .
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 9886665555555556678876543322211111111111100000000000000 000000000000 0
Q ss_pred ----hhHH--hhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 269 ----RFSE--LKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 269 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
.+.. ...+...++.........+..+........+.|.+.+ +.|++..+ .......++.+++.++.|++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0001111111222222222222222234567788774 67887665 4555667888999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh
Q 011470 340 KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (485)
|++||+.+..+..+..+..+.+... ... . ............+.+.+..+....++.|.+|++.|++
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~---~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAI---GGA----------N-VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAA 402 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhc---ccc----------H-HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhc
Confidence 9999998877655544443322211 000 0 1111111122222233334444578889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHH
Q 011470 420 AGSVATLANWLTVWLITMTANLLLNWSG-GGTFAIYT 455 (485)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~i~g~~~~~~~-~~~~~~~~ 455 (485)
++|+.+....+|+.++|.+.|.+.|..+ ...+...+
T Consensus 403 ~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 403 GLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 9999999999999999999999998433 33343333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=270.51 Aligned_cols=362 Identities=17% Similarity=0.182 Sum_probs=248.0
Q ss_pred HhhhhccccccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 011470 53 VALGPIQFGFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS 131 (485)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~ 131 (485)
+++..+...++.++..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 444444456777778888886 6789999999999999999999999999999999999999999999999888777665
Q ss_pred Hh--------hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchh
Q 011470 132 FA--------RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRI 199 (485)
Q Consensus 132 ~~--------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~ 199 (485)
++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+ +||+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 179 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG 179 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence 53 25778999999999999999999999999999999999999999988888888888877654 8999
Q ss_pred HHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccc
Q 011470 200 LAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYY 279 (485)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
.+++..+..++..+.....|++++. ++ ++.+.++.+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------------~~~~~~~~~~~~-- 218 (399)
T PRK05122 180 LGLLIMLLALLGLLLARPRPAVPPV---KG------------------------------------ERLPFRRVLGRV-- 218 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC---Cc------------------------------------cchhHHHHHHHH--
Confidence 8887655544433333333332210 00 000011111111
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 359 (485)
+.......+.. ........+.+.+..+.+.+..........++.+++.++.+++.||+++|+.+..+..+..++..
T Consensus 219 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 219 WPYGMGLALAS----IGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00011111111 11333445666666666664444555566788889999999999999999988877776666655
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
++.... ..+..++...+.+.+.+... +.......|..|+++|+++.|+.+....+|..++|.+.
T Consensus 295 ~~~~~~---------------~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 295 LLWLAP---------------SPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHHhc---------------cHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544321 01222333344444444333 33335667888999999999999999999999999999
Q ss_pred HHHHHhhc-chhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011470 440 NLLLNWSG-GGTFAIYTVVSAFTVAFVSIWVPETKGKT 476 (485)
Q Consensus 440 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (485)
|.+.+..+ ...+...++++++. ++.....+++++++
T Consensus 359 g~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 395 (399)
T PRK05122 359 GLVASWFGYPSIFLAAALAALLG-LALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHH-HHHHHHhccccccc
Confidence 99988543 34444444444444 33344445444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=262.77 Aligned_cols=331 Identities=18% Similarity=0.143 Sum_probs=231.9
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLY 140 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (485)
........+.+|.+.+++|+++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++
T Consensus 33 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (394)
T PRK10213 33 IIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLL 112 (394)
T ss_pred HHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 33443555678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHH-HHh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILI-TGL 215 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~-~~~ 215 (485)
+.|+++|++.+...+...+++.|++|+++|+++.++...+.++|.+++|.+++.+ +||+.|++.++..++.. ...
T Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 113 IGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888765 89999998665555433 333
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhc
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
...||+|+. ++ +...+..+.++++..+.... ..+..+.
T Consensus 193 ~~~p~~~~~---~~-----------------------------------~~~~~~~~~l~~~~~~~~~~----~~~~~~~ 230 (394)
T PRK10213 193 KSLPSLPGE---PS-----------------------------------HQKQNTFRLLQRPGVMAGMI----AIFMSFA 230 (394)
T ss_pred HHCCCCCcc---cc-----------------------------------cchhHHHHHhcCHHHHHHHH----HHHHHHH
Confidence 446665421 00 00001223333332222221 1122222
Q ss_pred chhhHHHh-HHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011470 296 GINGVVFY-SSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 296 ~~~~~~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
.......+ .|.+.++.|++... ......+++.+++.++.+++.||.+ |+.+..+.....+..+.+.... .
T Consensus 231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~---- 303 (394)
T PRK10213 231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--S---- 303 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--h----
Confidence 22233334 57777777887765 4455567888999999999999954 4443333333223222222110 0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGT 450 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~ 450 (485)
..+.......+.+.+++... +...+.+.+..| ++++.+.+......++|..+||.+.|.+.|..+...
T Consensus 304 --------~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~ 371 (394)
T PRK10213 304 --------DKIVATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS 371 (394)
T ss_pred --------hHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 11222333444454554333 333356777766 556777888888889999999999999999544333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=271.85 Aligned_cols=380 Identities=18% Similarity=0.210 Sum_probs=258.1
Q ss_pred hccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 011470 57 PIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARES 136 (485)
Q Consensus 57 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~ 136 (485)
++...++...++...|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 34456778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-H
Q 011470 137 SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-L 211 (485)
Q Consensus 137 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~ 211 (485)
+.+++.|++.|++.+...+....++.|++|+++|++++++.....++|.++++.+++.+ +||+.|++.++..++ .
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888764 899999986665555 4
Q ss_pred HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHH
Q 011470 212 ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLIL 291 (485)
Q Consensus 212 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
++..++.||+|+..... ++++.....+.... +...+++++......++.++++. .+...+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 225 (399)
T TIGR00893 163 VLWLKFIPDPPQKAKWL-TEEEKYIVVGGLLA------------EQQGKGPSTPKKYQIKELLKDRR----VWGLALGQF 225 (399)
T ss_pred HHhhheecCCCCccccC-CHHHHhhcchhhcc------------ccccccccCCCccchHHHhcCHH----HHHHHHHHH
Confidence 44455567665321111 11110000000000 00001111112223444444433 333333334
Q ss_pred HhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHh
Q 011470 292 QQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLI-ISSVGMTVSILIVAVSFFV 367 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 367 (485)
...........+.|.+.++ .|.+..+ .......+..+++.++.+++.||++||+... .......++.+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA 305 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 4444455666677777654 5776554 4555667888999999999999999886211 1111111111111111111
Q ss_pred hcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 368 KGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
... ... ........... +.+.+..+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.|..+
T Consensus 306 ~~~--------~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 306 TNY--------VNI-PYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred hcc--------chh-HHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 100 001 11122222222 22233456677999999999999999999999999999999999999998543
Q ss_pred --chhHHHHHHHHHHHHH
Q 011470 448 --GGTFAIYTVVSAFTVA 463 (485)
Q Consensus 448 --~~~~~~~~~~~~~~~~ 463 (485)
...+.+.+++.++..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 376 SFAGALMVVAALALIGAL 393 (399)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 3344444444444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=270.39 Aligned_cols=334 Identities=15% Similarity=0.080 Sum_probs=239.7
Q ss_pred ccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011470 64 CGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGR 143 (485)
Q Consensus 64 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r 143 (485)
....++..|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHhhcc
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGLFFI 218 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~~~ 218 (485)
++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++.+...+ +||+.|++.++..++ .+..++++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999988888889999997 6799999999999999987655444332 799999986665555 44445555
Q ss_pred CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchh
Q 011470 219 PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGIN 298 (485)
Q Consensus 219 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (485)
+|+|+...++ +. +.++++...++.++++..+..... .+.......
T Consensus 178 ~~~~~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 222 (377)
T TIGR00890 178 GYPPGQLIKT-NI------------------------------EVSVKDYTVWEMLRTPQFWVLYLS----FFLNAVSGL 222 (377)
T ss_pred ecCchhcccc-Cc------------------------------ccchhhhhHHHHHcCccHHHHHHH----HHHHhHHHH
Confidence 5544210000 00 000011122334444332222221 222211222
Q ss_pred hHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 299 GVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
....+.+.+.++.+.+..+ .......+..++++++.+++.||++||+.+..+.....++.+.+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------- 293 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML--------- 293 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc---------
Confidence 3334455566777776554 44556678889999999999999999999888877777766555432100
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
..........+.+...+.. .+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..+
T Consensus 294 ----~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 359 (377)
T TIGR00890 294 ----NDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG 359 (377)
T ss_pred ----hhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0111112223333333322 23334788899999999999999999999999999999999988444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=258.70 Aligned_cols=367 Identities=15% Similarity=0.094 Sum_probs=254.9
Q ss_pred HHHHhhhhccccccccccchhHHHHHh-hhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITR-DLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWL 128 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~ 128 (485)
+.+..++.+.........+++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.++
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 334444444456677888898888876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHH----HHhhc------
Q 011470 129 AISFA-----RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLA----YLLGL------ 193 (485)
Q Consensus 129 ~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~~~~------ 193 (485)
+.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++ |.+..
T Consensus 116 ~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~ 194 (462)
T PRK15034 116 WLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAF 194 (462)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99987 8999999999999998 77889999999999999999999999976666666544 43221
Q ss_pred ------------cccchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 011470 194 ------------FVPWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVA 260 (485)
Q Consensus 194 ------------~l~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (485)
..+||..+++-.+..++ .++.+++.+|.|+
T Consensus 195 ~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------------- 237 (462)
T PRK15034 195 LGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------------- 237 (462)
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------------
Confidence 11377776665554444 4444445544331
Q ss_pred hccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHH
Q 011470 261 SSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLA 338 (485)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~ 338 (485)
.+.......+.+|++. .|.+.+.++..+..+.++..+.|++.++ .++... .......+...+.++++|+++
T Consensus 238 --~~~~~~~~~~vlk~~~----~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LA 310 (462)
T PRK15034 238 --SRASIADQLPVLQRLH----LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAIS 310 (462)
T ss_pred --cccCHHHHHHHhCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 0001112233444444 4555555666666777888888888766 333222 223334677888999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCc----
Q 011470 339 DKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPI---- 414 (485)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 414 (485)
||+|+++++.++.+.+.++...+........ ....+.....+.......+.+..++. -++.+.+|+
T Consensus 311 DRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~---------~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~ 380 (462)
T PRK15034 311 DKFGGVRVTLINFIFMAIFSALLFLTLPGTG---------SGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIY 380 (462)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhcccc---------ccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhh
Confidence 9999999999888777666544333221000 00112223333333344444444443 666666663
Q ss_pred -----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHhccc
Q 011470 415 -----------------NIKGLAGSVATLANWLTVWLITMTANLLLNWSGGG--TFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 415 -----------------~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
++.|.+.|+......+|+++.|.+.|...+..+.+ .+..+.+..+++.++.+..+.|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 381 RVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred cccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 15688999999999999999999999998843333 3555555556666666655543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=268.23 Aligned_cols=377 Identities=19% Similarity=0.206 Sum_probs=263.8
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 45 SVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
+++..+..+.+..+..+++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555666666777788888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhH
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRIL 200 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~ 200 (485)
++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999998887655 89999
Q ss_pred HHhhH-HHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccc
Q 011470 201 AVLGI-LPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYY 279 (485)
Q Consensus 201 f~~~~-~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
|++.+ +..+..++...++||++++..++ +.++..+..++......+...+ +..+ .+.+.+..+...+.+++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhH
Confidence 88864 44444566677789987665444 3333332222221111000000 0000 000001111122333333322
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
+. .+.+.+..+...........+.|.+.++.|.+... .......++.+++.++.+++.||+++|+... ...+..+.
T Consensus 250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 327 (398)
T TIGR00895 250 RI-TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVF 327 (398)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHH
Confidence 22 22222333333344556667778877888887655 4555667888999999999999999984433 33333333
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
..++... ... ........++.+.+.+.. .+...++..|.+|++.|+++.|+.+....+|..++|.
T Consensus 328 ~~~~~~~--~~~------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~ 392 (398)
T TIGR00895 328 AVLVGST--LFS------------PTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI 392 (398)
T ss_pred HHHHHHH--hhC------------HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111 112233334444444433 3445589999999999999999999999999999999
Q ss_pred HHHHH
Q 011470 438 TANLL 442 (485)
Q Consensus 438 i~g~~ 442 (485)
+.|.+
T Consensus 393 ~~G~l 397 (398)
T TIGR00895 393 LAGYL 397 (398)
T ss_pred hHHhc
Confidence 99875
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=263.05 Aligned_cols=355 Identities=15% Similarity=0.121 Sum_probs=242.7
Q ss_pred HHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 011470 52 IVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS 131 (485)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~ 131 (485)
..++..+..++......+.+|.+++|+|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 34445555567777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 132 FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 132 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
+++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 9999999999999999999998899899999999999999999999999999999988877654 899999996665
Q ss_pred HHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHH
Q 011470 208 CTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGI 286 (485)
Q Consensus 208 ~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (485)
.++ .+..++.+||.++. .+.+ .+..++. ++++.. +..
T Consensus 167 ~~~~~~~~~~~lp~~~~~----~~~~---------------------------------~~~~~~~-~~~~~~----~~~ 204 (382)
T PRK10091 167 NIAVLASIYFWVPDIRDE----AKGG---------------------------------LREQFHF-LRSPAP----WLI 204 (382)
T ss_pred HHHHHHHHHHhCCCCCcc----cccC---------------------------------HHHHHHH-hcChHH----HHH
Confidence 444 34445567775420 0000 0000111 112211 111
Q ss_pred HHHHHHhhcchhhHHHh-HHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFY-SSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
................+ .+.+.+..|.++.. ......+++.++++++.+++.||+++|+.+..+..+.+++.+++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~ 284 (382)
T PRK10091 205 FAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH
Confidence 11111111112222233 34444456887665 4455667889999999999999999999888877776666654432
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
.... .+...+...+...+......+.......+..|++.++.+ ..+...++|..++|.+.|.+.
T Consensus 285 ~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~ 348 (382)
T PRK10091 285 FGGM--------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMML 348 (382)
T ss_pred HHhh--------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence 2110 112222222333333222233332344455455555544 346778899999999999999
Q ss_pred Hh-hcc-hhHHHHHHHHHHHHHH
Q 011470 444 NW-SGG-GTFAIYTVVSAFTVAF 464 (485)
Q Consensus 444 ~~-~~~-~~~~~~~~~~~~~~~~ 464 (485)
|. .++ ..+...++++.+....
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 349 TLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HcccCcchHHHHHHHHHHHHHHH
Confidence 94 333 3344443333333333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=262.88 Aligned_cols=373 Identities=15% Similarity=0.145 Sum_probs=263.1
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
.+++.++..+.+.+..+...++...+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++..+..
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34666777788888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cc
Q 011470 122 PNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PW 197 (485)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w 197 (485)
+.+++.+++.++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+ +|
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999998899999999999999999999998888888888888877554 89
Q ss_pred hhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc
Q 011470 198 RILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276 (485)
Q Consensus 198 r~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
|+.|++.++..++ .+..++..||+++...++ .+ .++....++.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------------------~~~~~~~~~~~~~~ 214 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEK---LS-----------------------------LKELGRDYKLVLKN 214 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---cc-----------------------------HHHHHHHHHHHHcC
Confidence 9999886655554 333445567764210000 00 00011123344444
Q ss_pred ccchhHHHHHHHHHHHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 011470 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVG 353 (485)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 353 (485)
+..+.......+. .........+.|.+. ++.|.++.+ .......++.+++.++.+++.||+++|+.+..+.+.
T Consensus 215 ~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~ 290 (406)
T PRK15402 215 RRFVAGALALGLV----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWP 290 (406)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4322222221111 111223334455554 446777655 333344567788999999999999999998888777
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
..++..++......... ..+.......+.+.+.+....+.. ...... +++++|++.+..+....++..
T Consensus 291 ~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g~g~~~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 358 (406)
T PRK15402 291 MVAGLLLAALATVISSH----------AYLWLTAGLSLYAFGIGLANAGLY-RLTLFS-SDVSKGTVSAAMGMLSMLIFT 358 (406)
T ss_pred HHHHHHHHHHHHHcccc----------cHHHHHHHHHHHHHHHHHHhhhHH-HHHhhh-ccccccHHHHHHHHHHHHHHH
Confidence 76666666544211110 111223334444444444333322 333333 458899999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011470 434 LITMTANLLLNWSGGGTFAIYTVVSAFTV 462 (485)
Q Consensus 434 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 462 (485)
+++.+.+.+.+..+...+....+++.+..
T Consensus 359 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 359 VGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999988655554444444433333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=262.76 Aligned_cols=425 Identities=18% Similarity=0.194 Sum_probs=308.3
Q ss_pred ccchhHHHHHHHHHhhhhccccccccccchhHHHHHhhh-C-------CCchhhhHHHHHHHHHHHHHHHhHHHHHhhhc
Q 011470 40 RDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDL-E-------LTLSEFSLFASLSNVGAMVGAITSGQISEYIG 111 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~G 111 (485)
....|+....+.+..++.|.++||...++.+.|.+...+ | .++...+.+..+..+|..+||++.|+++||+|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345678888899999999999999999999999887765 2 34556789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 011470 112 RKGSLMIAAIPNIIGWLAISFAR-------ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIG 184 (485)
Q Consensus 112 rr~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (485)
||+++...+++..+++++++++. -.+++...|++.|+|.|+-+|...++.+|...+++||...+...+..+.|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 99999999999999999888752 25789999999999999999999999999999999999988887777777
Q ss_pred HHHHHHhhccc-------------------cchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCH-HHHHHHHHHHhCC
Q 011470 185 IMLAYLLGLFV-------------------PWRILAVLGILPCTILITGLFFIPESPRWLAKMGMT-EDFEASLQVLRGF 244 (485)
Q Consensus 185 ~~~~~~~~~~l-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~-~~~~~~~~~~~~~ 244 (485)
...|.+++-.+ =||..+.+++++.+..+...+.+||++++.....++ +.+. +...+.
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~ 269 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKV 269 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccc
Confidence 77766555333 199999999999999999999999999886333322 1111 111110
Q ss_pred CcchHHHHHHHHHHHhhccccchhh---hHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--h-
Q 011470 245 DTDISIEVNEIKRSVASSSRRTTIR---FSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--V- 318 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~- 318 (485)
... +.++.+.. +...+.++.. +...+..+ .-..++.....++..-..++....+...+++..|+.+.. .
T Consensus 270 ~~~---~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~ 344 (538)
T KOG0252|consen 270 LSV---DIEAESTA-ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYH 344 (538)
T ss_pred ccc---ccchhhcc-ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHH
Confidence 000 00000000 1111111111 22222222 223455666666666666777778888888877765443 1
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHH
Q 011470 319 --------ATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVV 390 (485)
Q Consensus 319 --------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (485)
...+.....++|..+...++|++|||+..+.++.++.+..+.++....... ......+...
T Consensus 345 ~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-----------~~~Gf~v~y~ 413 (538)
T KOG0252|consen 345 ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-----------NTIGFVVLYS 413 (538)
T ss_pred HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-----------ccCceeehHH
Confidence 111222333446667778899999999999999999888888776543211 1122345555
Q ss_pred HHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----h-hcchhHHHHHHHHHHHHHH
Q 011470 391 AMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-----W-SGGGTFAIYTVVSAFTVAF 464 (485)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-----~-~~~~~~~~~~~~~~~~~~~ 464 (485)
+..++...+.+.....+.+|.+|.+.|++..|+...++..|++++...+.++.+ . +....++++++++.+..+
T Consensus 414 l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~- 492 (538)
T KOG0252|consen 414 LTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGIL- 492 (538)
T ss_pred HHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHh-
Confidence 666777778887788999999999999999999999999999999999999988 2 233345555555555544
Q ss_pred HHHhcccCCCCCHHHHHhhh
Q 011470 465 VSIWVPETKGKTLEEIQRSL 484 (485)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ 484 (485)
.-+++||+++++++|++++.
T Consensus 493 ~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 493 FTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred eeEEeecccccCHHHhcChh
Confidence 44566799999999886653
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=261.44 Aligned_cols=346 Identities=16% Similarity=0.175 Sum_probs=238.8
Q ss_pred cccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-------
Q 011470 61 GFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF------- 132 (485)
Q Consensus 61 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~------- 132 (485)
.+..+...|.+|. +.+|+|.|..+.|++.+++.+++.++++++|+++||+||||+++.+.+...++.+....
T Consensus 28 ~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (392)
T PRK12382 28 YMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS 107 (392)
T ss_pred HHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4456667788886 67899999999999999999999999999999999999999999998887766543322
Q ss_pred -hhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 133 -ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 133 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
.++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+ +||+.+.+..+.
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999999999988887654 899877765444
Q ss_pred HHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHH
Q 011470 208 CTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIG 287 (485)
Q Consensus 208 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (485)
.++........||.++. ++ ++.+.++..+. .+.... ...
T Consensus 188 ~~~~~~~~~~~~~~~~~---~~------------------------------------~~~~~~~~~~~-~~~~~~-~~~ 226 (392)
T PRK12382 188 PLLAWAFNGTVRKVPAH---AG------------------------------------ERPSLWSVVGL-IWKPGL-GLA 226 (392)
T ss_pred HHHHHHHHHhccCCCCC---cc------------------------------------cCchHHHHHHH-HHHhHH-HHH
Confidence 33332222223332210 00 00001111110 001111 111
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011470 288 LLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFV 367 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (485)
+. .........+.+.+.++.+.+.........+++.++++++.+++.||+++|+.+..+..+..++.+++...
T Consensus 227 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQ----GVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HH----HHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---
Confidence 11 11233445566677777776554455555677778899999999999999998888777776666554432
Q ss_pred hcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q 011470 368 KGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-S 446 (485)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~ 446 (485)
.+ .+.......+.+.+.+... +.......|.+|+++||++.|+.+...++|..++|.+.|.+.|. +
T Consensus 300 ~~------------~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 300 PT------------AWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred cc------------HHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 1122333334444443322 33346777888999999999999999999999999999999994 4
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 011470 447 GGGTFAIYTVVSAFTVAFVSI 467 (485)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (485)
....+...+++.++..++.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 367 YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 444555555555444444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=270.04 Aligned_cols=419 Identities=19% Similarity=0.138 Sum_probs=294.9
Q ss_pred cchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHH
Q 011470 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAA 120 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 120 (485)
+..++++......+........+....++..+ .+.++.+.....+..+++++|..+|++++|+++||+|||++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~ 155 (521)
T KOG0255|consen 78 WPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSL 155 (521)
T ss_pred cccccccccccccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHH
Confidence 33444444444444444444444555555444 4567778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc--cch
Q 011470 121 IPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--PWR 198 (485)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~wr 198 (485)
++..++.++.++++|++.+++.|++.|++.++.......++.|++++++|+.+..+ ......+..+++.+++++ +||
T Consensus 156 ~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr 234 (521)
T KOG0255|consen 156 LLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWR 234 (521)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999 666666666666666555 799
Q ss_pred hHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCC---cchHHHHHHH-H-HHHhhccccchhhhHHh
Q 011470 199 ILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFD---TDISIEVNEI-K-RSVASSSRRTTIRFSEL 273 (485)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 273 (485)
+.+++..++.++.++.+++.||+|||+..+++.+++.+.+++..+.| .+........ . +.......+++..+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 314 (521)
T KOG0255|consen 235 WLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDL 314 (521)
T ss_pred HHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhh
Confidence 99999888888777667777899999999999999999999887654 2222222221 1 11111122233456677
Q ss_pred hhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 011470 274 KQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVG 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 353 (485)
++.+..+...+...+..+.....++ -.+......|.+ ........+.....+....+...|+.|||.....+...
T Consensus 315 ~~~~~l~~~~~~~~~~~~~~~~~y~----gl~~~~~~lg~~-~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~ 389 (521)
T KOG0255|consen 315 FRTPRLRYRTLYLLFIWFVFSLVYY----GLSLNVSGLGGN-IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFL 389 (521)
T ss_pred hcCHHHHHHHHHHHHHHHHHhHHHH----hhhhhhhhcCch-HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7665333333333333321111111 122222223332 22344444557777888888999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
..++++..++....... +...+...+..++.+.++... +.+..|++|+..|..+.+..+....++++
T Consensus 390 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i 456 (521)
T KOG0255|consen 390 AGIGLLLFGWLPDDLGG------------WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSI 456 (521)
T ss_pred HHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776433210 111222222333333333334 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 011470 434 LITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEI 480 (485)
Q Consensus 434 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (485)
++|.+.-............+++....+...+...++||++++.+.+.
T Consensus 457 ~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 457 LAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 99999865555333333333566667777777789999998876543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=261.87 Aligned_cols=357 Identities=10% Similarity=0.047 Sum_probs=248.9
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWL 128 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~ 128 (485)
+...++++.+..+.+....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455666677778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc-----ccchhHHHh
Q 011470 129 AISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF-----VPWRILAVL 203 (485)
Q Consensus 129 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~wr~~f~~ 203 (485)
+++++++++.+++.|+++|++.+...+....++.|++|+++|++.++..+...++|..++|.+.+. .+||+.|.+
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888888888776543 389999988
Q ss_pred hHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHH
Q 011470 204 GILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLT 283 (485)
Q Consensus 204 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (485)
.++..++..+..++ .+.|+.. ++++ +++++. .++. +++..
T Consensus 168 ~~~~~~~~~~~~~~-~~~p~~~-~~~~-----------------------------~~~~~~--------~~~~-~~~~~ 207 (394)
T PRK03699 168 IGLVYVAIFILTLF-SEFPALG-KHAP-----------------------------KADKPV--------AKEK-WGIGV 207 (394)
T ss_pred HHHHHHHHHHHHHh-cCCcccc-ccCc-----------------------------cccCcc--------cccc-CChHH
Confidence 66555443333322 2222100 0000 000000 0000 11122
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
+...+..+........+..|.|.+.+ +.|++..+ .......++..+++++.++++||+++|+.+.....+..+...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 33333333333345566778888885 45887665 4445567788999999999999999998887666555444333
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 440 (485)
+... .+. ....+..+..+.+.+. ..+...++..|..| +.++...|......++|..++|.+.|
T Consensus 288 ~~~~---~~~------------~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G 350 (394)
T PRK03699 288 FVNT---DDP------------SHLLYAILGLGFFSSA-IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS 350 (394)
T ss_pred HHHc---CCc------------hHHHHHHHHHHHHHHH-HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3211 110 1122222333333322 23333356667655 45677888998999999999999999
Q ss_pred HHHHh-hcchhHHHHHHHHHHHH
Q 011470 441 LLLNW-SGGGTFAIYTVVSAFTV 462 (485)
Q Consensus 441 ~~~~~-~~~~~~~~~~~~~~~~~ 462 (485)
++.|. +....++...++..+..
T Consensus 351 ~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 351 PIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHhCchhhhhhhHHHHHHHH
Confidence 99984 44444444444444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.28 Aligned_cols=371 Identities=13% Similarity=0.096 Sum_probs=266.7
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-----hhh
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF-----ARE 135 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~ 135 (485)
.+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPS 109 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCc
Confidence 345556677889999999999999999999999999999999999999999999999988888777665543 467
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTIL 211 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~ 211 (485)
++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+.++|..+||.+++.+ +|++.|++.++..++.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999999988899999999999999999999999999999999999988765 7999998877766666
Q ss_pred HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHH
Q 011470 212 ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLIL 291 (485)
Q Consensus 212 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
.+..+.+||+++...+ +.++ .++....++..++++..+...+......
T Consensus 190 ~~~~~~l~~~~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (417)
T PRK10489 190 LLPLLRLPALPPPPQP--REHP-----------------------------LRSLLAGFRFLLASPVVGGIALLGGLLT- 237 (417)
T ss_pred HHHHHhCCCCCCCCcc--cccc-----------------------------hHHHHHHHHHHHcChHHHHHHHHHHHHH-
Confidence 6666677775421000 0000 0000112233344433222222111111
Q ss_pred HhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 292 QQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
.......+.|.+.++ .|.++.. .......++.+++.++.+++.||.++++.+..+..+..++.+++....
T Consensus 238 ----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 310 (417)
T PRK10489 238 ----MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--- 310 (417)
T ss_pred ----HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc---
Confidence 123445567777777 6777655 445556788899999999999997777777777666665554443220
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hc
Q 011470 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SG 447 (485)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~ 447 (485)
..+...+..++.+.+.+. ..+...+++.|..|++.||++.|+.+...++|..++|.+.|.+.+. +.
T Consensus 311 ------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~ 377 (417)
T PRK10489 311 ------------MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP 377 (417)
T ss_pred ------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Confidence 011222233333333322 2344457888999999999999999999999999999999999994 55
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhh
Q 011470 448 GGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQRS 483 (485)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
...+...+++..+..++.....++.++++++|++++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 378 VASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 556666666666767777777888888888777653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=272.00 Aligned_cols=370 Identities=13% Similarity=0.079 Sum_probs=251.2
Q ss_pred hhHHHHHHHHHhhhhccccccccccchhHHHHHh----------------------hhCCCchhhhHHHHHHHHHHHHHH
Q 011470 43 SISVLACVLIVALGPIQFGFTCGYSSPTQTAITR----------------------DLELTLSEFSLFASLSNVGAMVGA 100 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~i~~ 100 (485)
.+.++.+..+++++....+.|+...+...+.+.+ |+|++..+.|++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 3455667777777777888999888888877776 899999999999999999999999
Q ss_pred HhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHH
Q 011470 101 ITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA--RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ 178 (485)
Q Consensus 101 ~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 178 (485)
++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887654 568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHHH-HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHH
Q 011470 179 LSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTIL-ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEV 252 (485)
Q Consensus 179 ~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (485)
.+..+|.++++++++.+ +||+.|++.++..++. ++.+.+.+|+|+...+. ++++.+ ..+.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~-~i~~------------ 239 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEKK-YINS------------ 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHHH-HHHh------------
Confidence 99999999998877543 8999999977666654 44445566776421111 111100 0000
Q ss_pred HHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHH
Q 011470 253 NEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVI 329 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~ 329 (485)
....++.+.+.+..++++++++. .+...+..+........+..|.|.++++ .|.+... .......++.++
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i 312 (465)
T TIGR00894 240 ---SLQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWL 312 (465)
T ss_pred ---hcccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHH
Confidence 00000001112234555555443 4444555555555566777888888765 5777655 445566788899
Q ss_pred HHHHHHHHHHHhcchhHHH---HHHHHHHHHH---HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccc
Q 011470 330 ATGVTTWLADKAGRRALLI---ISSVGMTVSI---LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPI 403 (485)
Q Consensus 330 ~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (485)
+.++.|+++||+++|+... .......++. ............ .....+..+.+.+.+.+ ...+.
T Consensus 313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~-~~~~~ 381 (465)
T TIGR00894 313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA----------AFYLTIIILTLANAVSS-GPLAG 381 (465)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------chHHHHHHHHHHHHHhh-hhhhh
Confidence 9999999999986442210 0011111111 111111110000 01112222222222222 22233
Q ss_pred hhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 404 PWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
.+....|..| +.+|.+.|+.+....+++.++|.+.|.+.+.
T Consensus 382 ~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 382 VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 3345567766 5899999999999999999999999988763
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=250.52 Aligned_cols=347 Identities=14% Similarity=0.073 Sum_probs=243.9
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA 129 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~ 129 (485)
+..+.++.++...+.+...+.+|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcccc---chhHHHhhHH
Q 011470 130 ISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVP---WRILAVLGIL 206 (485)
Q Consensus 130 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~---wr~~f~~~~~ 206 (485)
+++++|++.+++.|+++|++.+...+...+.+.+..++++|+++++.+..+.++|..++|.+++.+. ++...+....
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 167 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL 167 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 9999999999999999999999998988888889999999999999999999999999999998762 2223333222
Q ss_pred HHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
.... ..+.....+++++ ++ ++..+.++.++++..+.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~-------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 168 VLAAILPLLFTRILNQQA-------------------------------------EN--HDSTSIWPMLKLRQARLGVNG 208 (381)
T ss_pred HHHHHHHHHHhcccCCCC-------------------------------------CC--CCCCCHHHHHHhcchHHHHHH
Confidence 2211 1122112222110 00 001122333334332221111
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
... ..........+.|.+.++.|.+... .......+..+++++..+++.||+++|+.+..+.....++.+.+..
T Consensus 209 ~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~ 284 (381)
T PRK03633 209 CII----SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS 284 (381)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh
Confidence 111 1112334455678888888887655 3444556788899999999999999999888776666665543321
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
. ........+.+.+.. ...|.....+.|..|+++++.+.+..+...++|..++|.+.|++.
T Consensus 285 ~------------------~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 285 Q------------------AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred h------------------HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112222222222 334555577888888888888888888889999999999999999
Q ss_pred Hhhcc-hhHHHHHHHH
Q 011470 444 NWSGG-GTFAIYTVVS 458 (485)
Q Consensus 444 ~~~~~-~~~~~~~~~~ 458 (485)
|..+. ..+...+.+.
T Consensus 346 ~~~g~~~~f~~~~~~~ 361 (381)
T PRK03633 346 QNYSDNLLFIMIASVS 361 (381)
T ss_pred HHhCccHHHHHHHHHH
Confidence 95443 3344433333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=263.73 Aligned_cols=398 Identities=14% Similarity=0.110 Sum_probs=256.3
Q ss_pred HHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII 125 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~ 125 (485)
++..+....+.+...+.++.......|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3445555666666667777777777888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc-----cc
Q 011470 126 GWLAISFA----RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF-----VP 196 (485)
Q Consensus 126 ~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~ 196 (485)
+.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+... .+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 98887764 4677888999999999999999999999999999999999999999999999888765432 38
Q ss_pred chhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhh
Q 011470 197 WRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQ 275 (485)
Q Consensus 197 wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (485)
||+.|++.++..++ .++.++++||+|+....++ .++.+ ....+ + ..++.+.+.+.++...+..++
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~---~---~~~~~~~~~~~~~~~~~~~~~ 249 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEEYR-------NDYPD---D---YNEKAEQELTAKEIFMQYVLP 249 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chhcc-------ccccc---c---cccccccccchHHHHHHHHcc
Confidence 99999996665555 5566677788775321111 00000 00000 0 000000000000111122333
Q ss_pred cccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 011470 276 RRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSV 352 (485)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 352 (485)
++. ++...+..+........+..+.|.+.++ .|.++.. .......+.+++++++.+++.||+++++....+..
T Consensus 250 ~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 325 (438)
T TIGR00712 250 NKL----LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF 325 (438)
T ss_pred Cch----HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence 333 2233233333333345666788888876 4777654 45556678889999999999999964432222322
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHH
Q 011470 353 GMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTV 432 (485)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 432 (485)
......+...... .... . ..+......+..+.+. .+..........|.+|++.|+++.|+.+...++++
T Consensus 326 ~~~~~~~~~~~~~-~~~~-----~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg 394 (438)
T TIGR00712 326 FMTLVTIAVIVYW-MNPA-----G----NPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 394 (438)
T ss_pred HHHHHHHHHHHHH-hcCC-----C----chHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhh
Confidence 2211111111110 1000 0 0011111122222211 11111212457789999999999999999988875
Q ss_pred -HHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 433 -WLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 433 -~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
.++|.+.|.+.|. +....+.+..++.++..+..+..++|.|
T Consensus 395 ~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 395 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6899999999994 4444555666666666666666666655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=260.63 Aligned_cols=373 Identities=15% Similarity=0.176 Sum_probs=256.1
Q ss_pred HHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 011470 52 IVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS 131 (485)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~ 131 (485)
+++++.+...++....++.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 34455566678888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 132 FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 132 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +||+.|++..+.
T Consensus 94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV 173 (471)
T ss_pred HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888665 899999987665
Q ss_pred HHH-HHHHhhccCCchhHHHhcCCHHHHHHHHH---------HHhCCCcc--hHHHHHH----------HHHHHhhcccc
Q 011470 208 CTI-LITGLFFIPESPRWLAKMGMTEDFEASLQ---------VLRGFDTD--ISIEVNE----------IKRSVASSSRR 265 (485)
Q Consensus 208 ~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~----------~~~~~~~~~~~ 265 (485)
..+ .+......|+.+. ++.+.+....... ...+.... ....... .....+...++
T Consensus 174 ~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (471)
T PRK10504 174 GIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR 250 (471)
T ss_pred HHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 544 3334444455431 1112121111000 00010000 0000000 00000111112
Q ss_pred chhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhc
Q 011470 266 TTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAG 342 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~ 342 (485)
+..+. ++++++.+........ ...........+.|++.+. .|.++.. .......++.+++.++.+++.||++
T Consensus 251 ~~~~~-~l~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g 325 (471)
T PRK10504 251 ALFSL-KLFRTRTFSLGLAGSF----AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFG 325 (471)
T ss_pred CccCH-HHhcccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22223 3455554333222222 2222344556677877774 6776655 4444556677778899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHH
Q 011470 343 RRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGS 422 (485)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 422 (485)
+|+.+..+..+..+...++....... ..+.......+.+.+.+....+.. ....+..|++.++.+.|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 326 YRRVLVATTLGLALVSLLFMLVALLG------------WYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNS 392 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccc------------cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHH
Confidence 99998888777766655554321000 011112223333344444434443 77778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 011470 423 VATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 423 ~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
+.++...+|..+++.+.|.+.+.
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999884
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=261.31 Aligned_cols=360 Identities=12% Similarity=0.063 Sum_probs=220.8
Q ss_pred ccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
..++.....+.+|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+
T Consensus 48 ~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l 127 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGF 127 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHH----HHhhc---------cccchhHHHhhHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLA----YLLGL---------FVPWRILAVLGIL 206 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~~~~---------~l~wr~~f~~~~~ 206 (485)
++.|++.|++.+.. +....++.|++|+++|++++++.....++|..++ |.+.. ..+||+.|++.++
T Consensus 128 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~ 206 (476)
T PLN00028 128 IAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGL 206 (476)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 99999999998865 4456788999999999999999876666665554 33322 1379999998666
Q ss_pred HHHHHHHHhhcc-CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTILITGLFFI-PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
+.++..+..+++ ++.|+. +.++.. ++.+.++.+....+++.++++. .+.
T Consensus 207 l~l~~~l~~~~~~~~~p~~-----~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~----~~~ 256 (476)
T PLN00028 207 LHIIMGILVLTLGQDLPDG-----NYRELK---------------------KSGTMPKDSFSKVLRYGVTNYR----TWI 256 (476)
T ss_pred HHHHHHHHHHHHcCcCCCC-----chhhHH---------------------hcCccccccHHHHHHHHHcCch----hHH
Confidence 655543333334 444421 000000 0000000001112233333322 222
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchh----HHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRA----LLIISSVGMTVSI 358 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~~~~~~ 358 (485)
+.+.++...........+.|.++. +.|++... .......++.++++++.|+++||++||+ ......+...+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~ 336 (476)
T PLN00028 257 LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG 336 (476)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence 222222222223345556666654 45887655 4555667889999999999999998652 1111111111111
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMT 438 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 438 (485)
+......... .....+..+.++..+..... +..+.+..+.. ++.+|++.|+.+....+|+.++|.+
T Consensus 337 i~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 337 VFCIWLGRAN------------SLGAAIVVMILFSIFVQAAC-GATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred HHHHHhcccc------------hHHHHHHHHHHHHHHHHHhh-hhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHH
Confidence 1111110000 01112222223333322222 22345666764 4789999999988777777777776
Q ss_pred HHHHHHh-hcchhHHHHHHHHHHHHHHH
Q 011470 439 ANLLLNW-SGGGTFAIYTVVSAFTVAFV 465 (485)
Q Consensus 439 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 465 (485)
.+ ..+. ++...+.+.+++.++..++.
T Consensus 403 ~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 403 FF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 54 1112 23344555554544444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.53 Aligned_cols=378 Identities=16% Similarity=0.167 Sum_probs=264.7
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWL 128 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~ 128 (485)
+...++++.+...++.+..++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34566677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhh
Q 011470 129 AISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLG 204 (485)
Q Consensus 129 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~ 204 (485)
++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.+++.+ +||+.|++.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999888766 899999987
Q ss_pred HHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHH--------H-HH-hCCCcch--H-HHHHH---------HHHHHhh
Q 011470 205 ILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASL--------Q-VL-RGFDTDI--S-IEVNE---------IKRSVAS 261 (485)
Q Consensus 205 ~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~--------~-~~-~~~~~~~--~-~~~~~---------~~~~~~~ 261 (485)
++..++ .++..+++||+++. ++++.|.....+ . .. .+...+. . ..... .....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL 240 (485)
T ss_pred hHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 665554 44445556665421 111112111000 0 00 1111000 0 00000 0000011
Q ss_pred ccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHH
Q 011470 262 SSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLA 338 (485)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~ 338 (485)
..+++..+ .++++++......+.. +...........+.|.+.++ .|.++.+ .......++.+++.++.|++.
T Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 315 (485)
T TIGR00711 241 TDDNPLVD-LRLFKYRNFTIGCVYM----SLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMG 315 (485)
T ss_pred cCCCCccC-HHHHcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112 2344444333222222 22222344556677777765 5877665 455556788899999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchh
Q 011470 339 DKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418 (485)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (485)
||++||+.+..+..+.+++...+........ ..+.......+.+.+.+....+.. ....+..|+++++
T Consensus 316 ~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g 383 (485)
T TIGR00711 316 DKIDPRKLVTIGLILYAVGFYWRAFTFTPDT-----------PFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIA 383 (485)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHhccCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHh
Confidence 9999999988887777666655542111000 011222333444444444444444 5556777999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 419 LAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 419 ~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
++.|+.+....+|+.+++.+.+.+.+.
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998873
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=250.57 Aligned_cols=336 Identities=15% Similarity=0.161 Sum_probs=240.0
Q ss_pred ccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
...+.....+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITG 214 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~ 214 (485)
++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++ .+..
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888765 899999886555444 4444
Q ss_pred hhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhh
Q 011470 215 LFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQL 294 (485)
Q Consensus 215 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (485)
+++.||+++... +.+. ++....+++.++++..+........ ..
T Consensus 177 ~~~~~~~~~~~~-~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 219 (385)
T TIGR00710 177 FFILPETLPYEA-RIQI--------------------------------STYFETFLLLLKSKMFWGYALIYGA----SF 219 (385)
T ss_pred HHhCCCCCCCcc-cCCH--------------------------------HHHHHHHHHHHcCchhHHHHHHHHH----HH
Confidence 556677542100 0000 0001122333444433222222211 22
Q ss_pred cchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011470 295 SGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFV 371 (485)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (485)
........+.|.+.+ +.|.++.. .......++.+++.++.+++.||+++|+.+..+.....++.+++.........
T Consensus 220 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (385)
T TIGR00710 220 GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG- 298 (385)
T ss_pred HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 223344445566554 56777665 44455678889999999999999999998888777666666555443211100
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 372 SDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
..........+.+.+.+.. .+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+
T Consensus 299 ---------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 299 ---------SWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred ---------hHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0111122223333333333 2334467777766 679999999999888777776677774443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=252.81 Aligned_cols=343 Identities=12% Similarity=0.018 Sum_probs=250.0
Q ss_pred hhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 011470 55 LGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR 134 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~ 134 (485)
.+.+...+......+.+|.+.++++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677778889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred -----hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH
Q 011470 135 -----ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI 205 (485)
Q Consensus 135 -----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~ 205 (485)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+ +||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888765 8999998876
Q ss_pred HHHHHHHHHhhcc--CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHH
Q 011470 206 LPCTILITGLFFI--PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLT 283 (485)
Q Consensus 206 ~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (485)
+..++..+..+.+ ||+++. ++++.++ +. .++....++.+++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAAS--EIQALSN-------------------AV--------LRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred HHHHHHHHHHHhcccccCCCc--cccccch-------------------hH--------HHHHHhHHHHHHcCcHHHHHH
Confidence 6555544333333 332210 0000000 00 000111234445554433322
Q ss_pred HHHHHHHHHhhcchhhHH-HhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVV-FYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 359 (485)
....+... ...... .+.|.+.++ .+.+..+ .......++.+++.++.+++.||.+||+.+..+....+++..
T Consensus 217 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (365)
T TIGR00900 217 LLALLFNL----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAIL 292 (365)
T ss_pred HHHHHHHH----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 22222221 122233 566777765 5776655 445556788899999999999999999988877666555555
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
.+..... ..+...+..++.+.+.+.. .+....+..|..|++.|+++.|+.+...+++..++|.+.
T Consensus 293 ~~~~~~~--------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 293 VVGLTPP--------------NFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHhhch--------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443210 0122333344444444433 344558899999999999999999999999999999999
Q ss_pred HHHHHh
Q 011470 440 NLLLNW 445 (485)
Q Consensus 440 g~~~~~ 445 (485)
|.+.|.
T Consensus 358 g~l~~~ 363 (365)
T TIGR00900 358 GPLADH 363 (365)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=247.77 Aligned_cols=367 Identities=16% Similarity=0.159 Sum_probs=247.0
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA 129 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~ 129 (485)
...+.+..+...++.....|.+|.+.+++|.+.++.++..+++.++++++++++|+++||+|||++++.+.+++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 97 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA 97 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 33445556667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH
Q 011470 130 ISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI 205 (485)
Q Consensus 130 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~ 205 (485)
+++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.+
T Consensus 98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999877777888899999999999999999999999999999888755 8999999876
Q ss_pred HHHHHHH-HHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHH
Q 011470 206 LPCTILI-TGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTV 284 (485)
Q Consensus 206 ~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (485)
+..++.. ..++.+||+++. +++..+ .+.....++.+++++..+
T Consensus 178 ~~~~i~~~~~~~~lp~~~~~---~~~~~~-----------------------------~~~~~~~~~~ll~~~~~~---- 221 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETVKR---GAVPFS-----------------------------AKSVLRDFRNVFRNRLFL---- 221 (413)
T ss_pred HHHHHHHHHHHHhCCCCccc---cCCCCC-----------------------------hHHHHHHHHHHHcCHHHH----
Confidence 6655543 345567886421 000000 000011233444444322
Q ss_pred HHHHHHHHhhcchhhHHHhHHHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 285 GIGLLILQQLSGINGVVFYSSTIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
...+..............+.|.+.++. |.++.+ ........+.+++..+.+++.++..+++..........++..++
T Consensus 222 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~ 301 (413)
T PRK15403 222 TGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALL 301 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 222222223333445555667777655 777665 33334456667777777776655444444333333333333333
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
......... ..+..+...++++.+.+...+... ...-+. ....+|++.++.+.....+...++...++
T Consensus 302 ~~~~~~~~~----------~~~~~~~~~~l~~~G~~~~~p~~~-~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 302 IVGNLLWPH----------VWLWSVLGTSLYAFGIGLIFPTLF-RFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HHHHHHccc----------cHHHHHHHHHHHHHHHHHHhHHHH-HHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322111100 011123344444444444332222 222121 22347999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHH
Q 011470 442 LLNWSGGGTFAIYTVVSAFTVAF 464 (485)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (485)
+.+.+....+....+++.+....
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~ 392 (413)
T PRK15403 370 LWFNGGRLPFHLLAVVAGVIVVF 392 (413)
T ss_pred HHHcCCchHHHHHHHHHHHHHHH
Confidence 88876666666655555544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=261.26 Aligned_cols=381 Identities=11% Similarity=0.052 Sum_probs=244.5
Q ss_pred HHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII 125 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~ 125 (485)
.|.++..+.+.......+...++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 45555555555544444556677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHH-HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhH
Q 011470 126 GWLAISFARESSFLYM-GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRIL 200 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~ 200 (485)
++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 9999999999998875 5699999999877888888899996 7899999999999999999988877655 89999
Q ss_pred HHhhHHHHHHHHHHhhcc-CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccc
Q 011470 201 AVLGILPCTILITGLFFI-PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYY 279 (485)
Q Consensus 201 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
|++.++..++..+..+++ ++.+.. .. .+.++ . +.....+...+ .......++..+...+ ++++++..
T Consensus 176 f~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~~~~-~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~ 243 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALMRPVGPSQ-RV-SKSKS-K---EGLPPDGSTKK-----LSKKSTAEKINRFLDF-SLFTHRGF 243 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc-cc-ccccc-c---ccCCCCCcccc-----ccccchhhhhhhhcch-HHhcCchH
Confidence 999766555543333333 322210 00 00000 0 00000000000 0000000000000111 23333332
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHH--HH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKA--GRRALLIISS--VG 353 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~--~~ 353 (485)
+......+...........+.+.+.++.|.+... ......+++.++++++.+++.||. ++|+...... +.
T Consensus 244 ----~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 244 ----LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred ----HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 2222222222233445556777777888887655 444556788888999999999973 3343333322 22
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
..++.++.... . ..+..++..++.+.+.+. ..+...+.+.|.+|+++++++.|+.+...++|.+
T Consensus 320 ~~l~~ll~~~~---~------------~~~~~~i~~~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ 383 (455)
T TIGR00892 320 NGLTHLLCALA---G------------DYTGLVIYCIFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL 383 (455)
T ss_pred HHHHHHHHHHh---c------------hHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH
Confidence 22222222111 1 012222333344444332 2344457888999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-cc-hhHHHHHHHHH
Q 011470 434 LITMTANLLLNWS-GG-GTFAIYTVVSA 459 (485)
Q Consensus 434 ~~~~i~g~~~~~~-~~-~~~~~~~~~~~ 459 (485)
++|.+.|.+.|.. ++ ..+.+.+++.+
T Consensus 384 igp~i~G~l~~~~g~~~~~f~~~~~~~l 411 (455)
T TIGR00892 384 IGPPLAGRLVDATKNYKYIFYASGSIVV 411 (455)
T ss_pred ccccceeeeehhcCCcchHHHHhhHHHH
Confidence 9999999998843 23 34444444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=250.96 Aligned_cols=361 Identities=14% Similarity=0.025 Sum_probs=243.6
Q ss_pred hhccccccccccchhHHHHHhhhCCCchh-----hhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 011470 56 GPIQFGFTCGYSSPTQTAITRDLELTLSE-----FSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI 130 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~ 130 (485)
+.+..++..+...+.+|.+.+++|++..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 34444566777888999999999998665 4899999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHH
Q 011470 131 SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGIL 206 (485)
Q Consensus 131 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~ 206 (485)
+++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|.+++|.+++.+ +||+.|++.++
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999865 5677888899999999999999999999999999998888765 89999988666
Q ss_pred HHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
..++ .+...+++||+++... +.++ .+ .+... +..+++........
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~-----------~~~~~-~~~~~~~~~~~~~~ 226 (408)
T PRK09874 181 VLFLCFLVTLFCIRENFQPVS---KKEM-------------------LH-----------MREVV-TSLKNPKLVLSLFV 226 (408)
T ss_pred HHHHHHHHHHHHhccCccccc---chhh-------------------hH-----------HHHHH-HhCcCCchHHHHHH
Confidence 5554 4444555666532100 0000 00 00001 11222221111111
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh------hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD------VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 359 (485)
.. +...........+.+.+..+.+.+... ......+++.+++.+..|++.||++||+.+..+.....++.+
T Consensus 227 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 227 TT---LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI 303 (408)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 11 111111223334455555544322221 222334567778888999999999999988877666655544
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
..... . ..+...+..++.+.+.+.. .+...+...+..|++.+|+..++.+....+|..++|.+.
T Consensus 304 ~~~~~---~------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 304 PMSFV---Q------------TPLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHHh---c------------cHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 43321 0 0122223333344444333 333446677788989999999999999999999999999
Q ss_pred HHHHHh-hcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 440 NLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 440 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
|.+.+. +....+...+++.++..+..+...+
T Consensus 368 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 368 AAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999884 4444555555555555554444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=258.96 Aligned_cols=363 Identities=16% Similarity=0.107 Sum_probs=244.5
Q ss_pred hhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q 011470 56 GPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARE 135 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~ 135 (485)
+++...+++...+...|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 34556678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH-Hhhcc----ccchhHHHhhHHHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAY-LLGLF----VPWRILAVLGILPCTI 210 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~----l~wr~~f~~~~~~~~~ 210 (485)
++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++ .++.. .+||+.|++.++..++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 34433 3899999886654444
Q ss_pred -HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHH
Q 011470 211 -LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLL 289 (485)
Q Consensus 211 -~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
.++.+++.||+|+....++.+++.. + +.++.++..+++.+..+...+.+++++.. +...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 224 (379)
T TIGR00881 163 VSLICFLLLRDSPQSCGLPPAEEMPN-----------E---EPDGDAEKKEEELTKKQIFLQYVLLNKVL----WYISLG 224 (379)
T ss_pred HHHHHheeeCCCccccccCccccCcc-----------c---ccccccccccccccchHHHHHHHHhcchH----HHHHHH
Confidence 5566667777664211111000000 0 00000000000111112223444444432 223333
Q ss_pred HHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011470 290 ILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFF 366 (485)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (485)
.+...........+.|.+.++ .|.++.+ .......+..+++.++.+++.||..+|+...............+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 333333345566677777654 5777655 4555667888999999999999864332222221111111111111100
Q ss_pred hhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 367 VKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
... ..........+..+.. ..+..+....+..|..|++.|+++.|+.+....+|+.++|.+.|.+.|..
T Consensus 305 ~~~----------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 305 NPA----------ANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred Ccc----------hhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 000 0011122222222222 22333344577899999999999999999999999999999999999844
Q ss_pred c
Q 011470 447 G 447 (485)
Q Consensus 447 ~ 447 (485)
+
T Consensus 374 g 374 (379)
T TIGR00881 374 G 374 (379)
T ss_pred c
Confidence 3
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=253.97 Aligned_cols=339 Identities=23% Similarity=0.310 Sum_probs=244.3
Q ss_pred hhhccccccccccchhHH-HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 011470 55 LGPIQFGFTCGYSSPTQT-AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA 133 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~ 133 (485)
++.+...++.....+.+| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344555667777888999 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHH
Q 011470 134 RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCT 209 (485)
Q Consensus 134 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~ 209 (485)
+|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+ +||+.|++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 88889999999999999999999999999999999999999999999999999999998877 79999999777666
Q ss_pred HHHH-HhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchh-hhHHhhhcccchhHHHHHH
Q 011470 210 ILIT-GLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI-RFSELKQRRYYFPLTVGIG 287 (485)
Q Consensus 210 ~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 287 (485)
+..+ ...+++++|+....+++.++. ++.+++.. .++.+++++..+.......
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFF 216 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHHHHHH
T ss_pred hhhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhhhhhh
Confidence 6443 335555543221111110000 00000111 2455555554431222222
Q ss_pred HHHHHhhcchhhHHHhHHHH-HhHcCCC-chh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTI-FESAGIT-SSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
. ..........+.|.+ .+..|.+ ..+ .......+.++++.++.+++.||+++|+..........+....+..
T Consensus 217 ~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 217 L----FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL 292 (352)
T ss_dssp H----HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred H----HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 2 222344567777776 5666877 344 3356667888888999999999999887777666655555554443
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
..... ..........+.+.+.+.. .+....+..|..|++++|++.|+.+...++++.++|
T Consensus 293 ~~~~~------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 293 LPFSS------------SPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp SHHHC------------HHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 32221 1122333444445544433 455559999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=247.48 Aligned_cols=333 Identities=17% Similarity=0.151 Sum_probs=235.9
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLY 140 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (485)
.+..+.+.|.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLF 216 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~ 216 (485)
+.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++..+..++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888889999999999999998888888888888888777654 899999887666655444444
Q ss_pred ccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcc
Q 011470 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSG 296 (485)
Q Consensus 217 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (485)
+++|+++. +++ ++++.+++++++++..+......... ...
T Consensus 179 ~~~~~~~~---~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 218 (401)
T PRK11043 179 RLKPSKKA---RKQ---------------------------------SQDALTFKQLLKSKTYLGNVLIFAAC----SAA 218 (401)
T ss_pred HcCCCCCc---ccc---------------------------------chHHHHHHHHHcChhHHHHHHHHHHH----HHH
Confidence 55554310 000 00111233344443322222221111 112
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
......+.|.+.++.|.++.. .......++.+++.++.+++.||+++|+..........++.+.+.........
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 294 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP---- 294 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence 334455677788888887665 33344567778899999999999999887666555554444433322111110
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
..+..+....+.+.+.+.. .+.......+..| +++|++.|+.+.....++..++.+.|.+.+.
T Consensus 295 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 295 ------SLVPLLIPFCVMAAANGAI-YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred ------cHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 0112222233334444333 3333356666655 6799999999999999999999999988773
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=248.55 Aligned_cols=364 Identities=15% Similarity=0.117 Sum_probs=251.1
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
..+..++.+.++++.+.++.+|+..+..+.+.+++.||+++++.|++.+.+.+.+.+++|+.|+++|||.||+++.+|..
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 34455667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----c
Q 011470 122 PNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----P 196 (485)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~ 196 (485)
+|.++.++++++..+|+++++|.+.|+|.+...|+++++++|.+|.++|++.+++++.+.++|..+|.+++..+ .
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888776 3
Q ss_pred chhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhh
Q 011470 197 WRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQ 275 (485)
Q Consensus 197 wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (485)
|||.|+..+++.++ +++..++.+|++|- ..++... .+ ...+...+.-.+.+.+.+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~-------~~------------~~~~~~ts~~kDl~~l~~ 242 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDG-------EN------------KMVKPFTSVWKDLKVLAK 242 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccccc-------CC------------cCCCCccchHHHHHHHHc
Confidence 99999997776666 66667777776531 1110000 00 000011111222333333
Q ss_pred cccchhHHHHHHHHHHHhhcchhhHHHhHHHHHh----HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcch----h
Q 011470 276 RRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFE----SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRR----A 345 (485)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~----~ 345 (485)
.+......+.+....+. ...+.+|.|.+.. -.|.+... ....+...++.+|.+++|.++||+.|+ .
T Consensus 243 ~~v~v~~sl~~~a~~fv----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~ 318 (493)
T KOG1330|consen 243 IKVFVLSSLGIIAAQFV----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG 318 (493)
T ss_pred cCceeeehHHHHHHHHh----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccccc
Confidence 33333333333333332 3344445554443 23444333 555566788899999999999995321 1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHH
Q 011470 346 LLIISSVGMTVSI----LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAG 421 (485)
Q Consensus 346 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (485)
.........+.+. ..+.+...... ...+.. +.+++++............-+..|+.|+++|.++.
T Consensus 319 ~~~~~q~~~~~g~~~s~~~L~~~~~~~~----------~s~~~~-~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~ 387 (493)
T KOG1330|consen 319 TLRASQLSAALGAPLSIPFLFLFPAFTS----------SSMIFG-LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAY 387 (493)
T ss_pred chhHHHHHHhhhhhHHHHHHHHHHhhhh----------HHHHHH-HHHHHHHHHHHhcccccccceeeEecCcccccHHH
Confidence 2222222222211 11111111110 111222 22223333332233333347888999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHH
Q 011470 422 SVATLANW-LTVWLITMTANLLLN 444 (485)
Q Consensus 422 g~~~~~~~-~g~~~~~~i~g~~~~ 444 (485)
++...+.. +|.+-+|.+.|.+.|
T Consensus 388 a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 388 ALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred HHHHHHHHHhccCCCcceehhHHH
Confidence 99876654 555667779999988
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=249.18 Aligned_cols=345 Identities=12% Similarity=0.100 Sum_probs=237.8
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIG 126 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~ 126 (485)
...+..+.+..+..+++.....+..|.+++++|+++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~ 104 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33444555555666788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc---------
Q 011470 127 WLAI---SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF--------- 194 (485)
Q Consensus 127 ~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------- 194 (485)
++++ .++++++.++++|+++|+|.+...+..+.++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~ 184 (438)
T PRK10133 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9886 4688999999999999999999999999999998877777778899999999999888876531
Q ss_pred ---------------------ccchhHHHh-hHHHHHHH-HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHH
Q 011470 195 ---------------------VPWRILAVL-GILPCTIL-ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIE 251 (485)
Q Consensus 195 ---------------------l~wr~~f~~-~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (485)
.+||++|+. ..+..++. ++....+||.+.. +. .
T Consensus 185 ~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~-~-------------------- 240 (438)
T PRK10133 185 SQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH-S-------------------- 240 (438)
T ss_pred chhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cc-c--------------------
Confidence 145556654 33333222 2223334543210 00 0
Q ss_pred HHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHH-Hh-HcCCCchh--hHHHHHHHHH
Q 011470 252 VNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTI-FE-SAGITSSD--VATLGLGALQ 327 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~--~~~~~~~~~~ 327 (485)
+++..+.....+++++++..+...+...+.. ........|.+.+ .+ ..|.++.. .......++.
T Consensus 241 --------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~ 308 (438)
T PRK10133 241 --------DAKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_pred --------cccccchhhhHHHHHhCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Confidence 0000001112334455554333222222222 2233344455555 34 45887765 5566778899
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhh
Q 011470 328 VIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVI 407 (485)
Q Consensus 328 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (485)
++++++.+++.||+++|+.+..+..+..+.+++.... .. ...+..+.+.+++.+..+ |..++.
T Consensus 309 ~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~l~glg~~~i~-P~~~s~ 371 (438)
T PRK10133 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GG-------------HVGLIALTLCSAFMSIQY-PTIFSL 371 (438)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-------------hHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999998887766655444433221 10 012334445555555544 444588
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 408 MSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 408 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
..+..|+ +.+++.++..+ ..+|+.++|.+.|.+.|..
T Consensus 372 a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~ 408 (438)
T PRK10133 372 GIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA 408 (438)
T ss_pred HHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhc
Confidence 8888764 46778887764 5578899999999998843
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=244.96 Aligned_cols=352 Identities=15% Similarity=0.132 Sum_probs=232.4
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---H-hhhHHHHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS---F-ARESSFLYMG 142 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~ 142 (485)
..+.++.+.+|+|.++.+.|++.+.+.+++.+++++.|+++||+||||++..+..+.+++++++. + .++++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 33456677789999999999999999999999999999999999999999999999998877653 3 2578889999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHH-HHHHHhhccc----cchhHHHhhHHHHHH-HHHHhh
Q 011470 143 RLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGI-MLAYLLGLFV----PWRILAVLGILPCTI-LITGLF 216 (485)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~ 216 (485)
|+++|++.+...+...+.+.+++|+++|++++++...+.++|. +++|.+++.+ ||+..+|.......+ .++..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888899999999999999999999999997 5788877543 766555543332222 233334
Q ss_pred ccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcc
Q 011470 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSG 296 (485)
Q Consensus 217 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (485)
+.+|.++.. ++++++ +.++....++.+++++.. +...+..+.....
T Consensus 192 ~~~~~~~~~-~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 237 (402)
T TIGR00897 192 SNKDIFTPQ-HMQTRE-----------------------------KFSELGKAATILFTNPNV----LLGGMVRIINTIG 237 (402)
T ss_pred ccCCCCCcc-cccCCc-----------------------------chhhHHHHHHHHHcChhH----HHHHHHHHHHHHH
Confidence 445432100 000000 000001123344444432 2222233333344
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLI-ISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
......+.|.+.++.|.+..+ .......++++++.++.|+++||++||+... .+.+...++...+.........
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--- 314 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH--- 314 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC---
Confidence 556677889888888887766 3334557888999999999999999888654 2233333332222221111000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFA 452 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~ 452 (485)
..+...+...+.+.+.+. ..+.. ....|. ++++|+++.|+.+...++++.++|.+.|.+.|. +....++
T Consensus 315 -------~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~ 384 (402)
T TIGR00897 315 -------SFAVALIIAIALGIFLAG-YVPLA-AVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVW 384 (402)
T ss_pred -------cHHHHHHHHHHHHHHHHH-HHHHH-HHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 011222233333333332 23433 455676 456899999999999999999999999999994 4444455
Q ss_pred HHHHHHHHHHHHH
Q 011470 453 IYTVVSAFTVAFV 465 (485)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (485)
+.+++.++..+..
T Consensus 385 ~~a~~~~i~~~~~ 397 (402)
T TIGR00897 385 IFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=245.42 Aligned_cols=364 Identities=14% Similarity=0.061 Sum_probs=240.9
Q ss_pred hhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 011470 55 LGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR 134 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~ 134 (485)
++.++..+.........+.+.+|+|.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++++++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 33344445444445566677899999999999999999999999999999999999999999999999999998888877
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHHH
Q 011470 135 ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTIL 211 (485)
Q Consensus 135 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~~ 211 (485)
+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++.
T Consensus 90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 78999999999999999999999999999999999999999999999999999877 4555555544444444
Q ss_pred HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHH
Q 011470 212 ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLIL 291 (485)
Q Consensus 212 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
.+..+.+||+|+...+++. ++ .+. ..+. ....+.+++++..+...+...+...
T Consensus 167 ~~~~~~l~~~~~~~~~~~~-~~-~~~--------------~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (393)
T PRK11195 167 ALFNLFIPRLGARRPGQSW-NP-IAL--------------LRDF-----------FHACRVLWRDKLGRFSLAGTTLFWG 219 (393)
T ss_pred HHHHhcCCCCcccccccCC-CH-HHH--------------HHHH-----------HHHHHHHHhCchhHHHHHHHHHHHH
Confidence 5555677886532111000 00 000 0000 0112344445443333322222221
Q ss_pred HhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 292 QQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
. .....+..+.+.+ ..|.++.+ ......+++.++++++.+++.||.++++.+..+.. .++....+... .
T Consensus 220 ~----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~---~ 291 (393)
T PRK11195 220 A----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ---H 291 (393)
T ss_pred H----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH---h
Confidence 1 2233333444443 35776655 45556678889999999999999888877666532 22222222211 0
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINI-KGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
..+......++.+.+.+....+.. +...+..|++. +|++.++.+...+++..++..+.+.+...+-
T Consensus 292 ------------~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (393)
T PRK11195 292 ------------SLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGV 358 (393)
T ss_pred ------------HHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 112223333344454444444444 66677755554 6999999999999999999999997766665
Q ss_pred chhHHHHHHHHHHHHHHHHHhc
Q 011470 448 GGTFAIYTVVSAFTVAFVSIWV 469 (485)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
...+.+.....++...+.+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 359 PVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-30 Score=242.32 Aligned_cols=348 Identities=13% Similarity=0.127 Sum_probs=232.1
Q ss_pred hhccccccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH-HHHHHHHHHHHHHHh
Q 011470 56 GPIQFGFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI-AAIPNIIGWLAISFA 133 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~l~~~~~~~~~~~ 133 (485)
.++..++..+...|.+|. +++++|.++.+.|++.+++.+...+.+++.|+++||+||||.++. +..+..++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777888886 578999999999999999999999999999999999999887654 566667788889999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhH--HHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 134 RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGAL--GSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 134 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
+|++.+++.|++.|.+.+...|...++..|+.|+++|++. .+....+.++|.+++|.+++.+ +||+.|++.++.
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999988888888888999999887777654 5777777888888888777654 899999997766
Q ss_pred HHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHH
Q 011470 208 CTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGI 286 (485)
Q Consensus 208 ~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (485)
.++ .++.++++||.|+...++. ++.+.++.++++..+......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGAPGAL------------------------------------TRLEVRGLLASRDTRLLFVAC 208 (375)
T ss_pred HHHHHHHHHHhCCCcccCccccc------------------------------------CcchhhhhhcCcchHHHHHHH
Confidence 555 4445566888763210000 000111123333222222222
Q ss_pred HHHHHHhhcchhhHHHhHHHHH-hHcCCCchhh--HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIF-ESAGITSSDV--ATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
.+... .......+.|.+. ++.|.++.+. .........+++.++.+++.||++||+.+..+.....+....+..
T Consensus 209 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 209 TLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 11111 1223334445554 4567776552 223334556778889999999999999887766554443333222
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
. . ..+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.
T Consensus 285 ~---~------------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 285 D---N------------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred H---H------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 0112222223333333332 34445778888775 5679999999999999999999999998
Q ss_pred Hhhc-chhHHHHHHHHHH
Q 011470 444 NWSG-GGTFAIYTVVSAF 460 (485)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~ 460 (485)
+..+ ...+...+++.++
T Consensus 348 ~~~g~~~~~~~~~~~~~~ 365 (375)
T TIGR00899 348 ERWSYHAVYWFAIVMLIV 365 (375)
T ss_pred HhccchhHHHHHHHHHHH
Confidence 8544 3344444443333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=240.28 Aligned_cols=330 Identities=17% Similarity=0.205 Sum_probs=226.3
Q ss_pred ccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011470 62 FTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYM 141 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (485)
+..+...|.+|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY 84 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHhh
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGLF 216 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~ 216 (485)
.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.++..++ .++..+
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887655 899999886655554 445556
Q ss_pred ccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcc
Q 011470 217 FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSG 296 (485)
Q Consensus 217 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (485)
++||+++...++ +. + .++....+++.++++.... ..+.....+..
T Consensus 165 ~~~~~~~~~~~~-~~---------------~---------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 209 (377)
T PRK11102 165 FIPETLPKERRQ-PF---------------H---------------LRTTIRNFASLFRHKRVLG----YMLASGFSFAG 209 (377)
T ss_pred hCCccCcccccC-CC---------------C---------------hHHHHHHHHHHHcChHHHH----HHHHHHHHHHH
Confidence 677764210000 00 0 0000112233343332221 22222222222
Q ss_pred hhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 297 INGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 297 ~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
......+.|.+. +..|.++.+ .......+..+++.++.+++.||+|+|+.+..+.....+..+.+........
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 285 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDL---- 285 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 333333444444 456887665 4455567888999999999999999999888777654443333222211110
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHH-HHHHHHHHHH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANW-LTVWLITMTA 439 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~ 439 (485)
..+...+....+..+.+.. .+....+..|..| +.++++.++.+.... +|..+++.+.
T Consensus 286 -------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 286 -------GFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred -------hHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111222222233333222 2223356677766 789999999876644 4555555543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-29 Score=239.58 Aligned_cols=325 Identities=20% Similarity=0.202 Sum_probs=221.4
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLY 140 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (485)
........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.++
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~ 95 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL 95 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44445556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGL 215 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~ 215 (485)
+.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++ .++..
T Consensus 96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888887654 899999886655444 44555
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhc
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
+++||+++.. +++.+ +.....++.++++..........+...
T Consensus 176 ~~~~~~~~~~--~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (392)
T PRK10473 176 FILKETRPAR--APAAS--------------------------------SKPRENSESLLNRFFLSRLVITTLSVT---- 217 (392)
T ss_pred HHcCCCCCcc--cCCcc--------------------------------chHHHHHHHHhCHHHHHHHHHHHHHHH----
Confidence 6677764210 00000 000011122222222211111111111
Q ss_pred chhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011470 296 GINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 296 ~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
.......+.|.+. ++.|.++.. ......++..+++.++.+++.||++||+.+..+.....++.+.+......
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 292 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH----- 292 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1122333444444 456877655 34455678889999999999999999999888877776666655543111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
........+...+.+.+... ....+..|.++|+ |.......++..+++.+.+++.+
T Consensus 293 ----------~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 293 ----------AVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred ----------HHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333333333221 2333444544443 33444455666777777777776
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=238.34 Aligned_cols=335 Identities=24% Similarity=0.355 Sum_probs=265.0
Q ss_pred HhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 011470 53 VALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF 132 (485)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 132 (485)
+.+..+...++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34445556778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHH
Q 011470 133 ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPC 208 (485)
Q Consensus 133 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~ 208 (485)
+++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+ +||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888776 6999998877666
Q ss_pred HHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHH
Q 011470 209 TILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGL 288 (485)
Q Consensus 209 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (485)
++..+...+++ +..+...+
T Consensus 164 ~~~~~~~~~~~-------------------------------------------------------------~~~~~~~~ 182 (352)
T cd06174 164 LLLALLLLFLL-------------------------------------------------------------RLLLLLAL 182 (352)
T ss_pred HHHHHHHHHHH-------------------------------------------------------------HHHHHHHH
Confidence 55444433332 01233333
Q ss_pred HHHHhhcchhhHHHhHHHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHH
Q 011470 289 LILQQLSGINGVVFYSSTIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKAGRRA-LLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 364 (485)
..+...........+.+.+.++. +.+..+ .......++..++.++.+++.||++||+ .+..+.....++...+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444444566677777777765 766655 5556668889999999999999999999 8888877777777666543
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.. .+...+...+.+.+.+. ..+....+..|..|+++|++..|+.+....++..++|.+.+.+.+
T Consensus 263 ~~---------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 263 PS---------------LALLLVALLLLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred cc---------------HHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 12233444444444443 345556999999999999999999999999999999999999997
Q ss_pred -hhcchhHHHHHHHHHHHHHH
Q 011470 445 -WSGGGTFAIYTVVSAFTVAF 464 (485)
Q Consensus 445 -~~~~~~~~~~~~~~~~~~~~ 464 (485)
.+....+.+.+++.++..+.
T Consensus 327 ~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 327 TGGYGGVFLILAALALLAALL 347 (352)
T ss_pred ccCcchHHHHHHHHHHHHHHH
Confidence 44444455555554444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=231.74 Aligned_cols=362 Identities=16% Similarity=0.229 Sum_probs=272.0
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHH---
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESS--- 137 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~--- 137 (485)
.+.....+++.+.+.+|+|+|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-++..+++.+++
T Consensus 27 F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~ 106 (417)
T COG2223 27 FMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTW 106 (417)
T ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH----HHHhhcccc---chhHHHhhHHHHHH
Q 011470 138 FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIML----AYLLGLFVP---WRILAVLGILPCTI 210 (485)
Q Consensus 138 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~----~~~~~~~l~---wr~~f~~~~~~~~~ 210 (485)
++++.+.+.|++.+ .+......+++|+||+++|.++|++. ..|+|..+ +|.+....+ ||....+-.+..++
T Consensus 107 ~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 107 QLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999655 66889999999999999999999998 77777665 566666667 99888876665555
Q ss_pred -HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHH
Q 011470 211 -LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLL 289 (485)
Q Consensus 211 -~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
.+..++...|.|+.....+ +..+...+.+++++. .|.+.+.
T Consensus 185 ~~v~~~~~~~d~p~~r~~~~----------------------------------~~~~~~~~~v~~~~~----~W~lsll 226 (417)
T COG2223 185 AAVLAWLGMNDVPEHRASVK----------------------------------PQLPAQLKAVFSNKD----TWLLSLL 226 (417)
T ss_pred HHHHHHHHhCCChhhhcccc----------------------------------ccchhHHHHHhcCcc----hHHHHHH
Confidence 6677777788774211000 000023444454444 5666667
Q ss_pred HHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011470 290 ILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFF 366 (485)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (485)
++..+.++.++..++|.++++ +|.++.. .......+.+.+.++++|+++||+|.++.....+..++++..+......
T Consensus 227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence 777777788888888888865 5887666 4555567788899999999999999999999888888888777765432
Q ss_pred hhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 367 VKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
.... .......+..........+.+...+. .++...+| ++.|.+.|++...+.+|++.-|...|...+..
T Consensus 307 ~~~~--------~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 307 GFGH--------GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred cccc--------CcchHHHHHHHHHHHHHhccCcchhe-eechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 2111 01123333434445555555544554 78888877 57899999999999999999999999999955
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHhcccC
Q 011470 447 GG--GTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 447 ~~--~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
+. ..++++....+++.+..+....++
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 345666666666666555554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-29 Score=237.19 Aligned_cols=326 Identities=11% Similarity=0.113 Sum_probs=225.9
Q ss_pred cccchhHH-HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011470 65 GYSSPTQT-AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGR 143 (485)
Q Consensus 65 ~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r 143 (485)
....|.++ .+.+++|++..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33445555 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHH-HHHHhhccC
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTI-LITGLFFIP 219 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~-~~~~~~~~~ 219 (485)
+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.++..++ .++..++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988899999999999999999999999999999999999988776 899999986655444 334444555
Q ss_pred CchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhh
Q 011470 220 ESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGING 299 (485)
Q Consensus 220 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (485)
|.+. + +.+ ++.+..++..++++......... +..+.....
T Consensus 187 ~~~~----~-~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 226 (400)
T PRK11646 187 AYKL----S-TVR-------------------------------TPVREGMTRVLRDKRFVTYVLTL----TGYYMLAVQ 226 (400)
T ss_pred cccc----c-ccc-------------------------------hhhHHHHHHHHcCchHHHHHHHH----HHHHHHHHH
Confidence 5310 0 000 00011233344433322211111 111111223
Q ss_pred HHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 300 VVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLAD-KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
...+.|.+.++.+.++.. ......++....+....+++.| |++.++.+..+..+..++..++.....
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---------- 296 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---------- 296 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 345677877776555544 2233334444444444455554 556566666666656555544433210
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
.+.......+++.+.+.. .|...++..+..|+++||++.|+.+....+|..++|.+.|.+.|.+
T Consensus 297 -----~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 297 -----LQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred -----HHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 111222223333333332 3444488889999999999999999999999999999999999954
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-29 Score=240.91 Aligned_cols=344 Identities=21% Similarity=0.230 Sum_probs=233.9
Q ss_pred ccccccccccchhHHHHHhhhC--CCchhhhHHHHH-----HHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 011470 58 IQFGFTCGYSSPTQTAITRDLE--LTLSEFSLFASL-----SNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI 130 (485)
Q Consensus 58 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~ 130 (485)
+.+.+|...+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888764 455666554443 334445789999999999999999999999999999999
Q ss_pred HHhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc---------
Q 011470 131 SFARESS--------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL--------- 193 (485)
Q Consensus 131 ~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~--------- 193 (485)
+++++++ .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 48899999999999999999999999999999999999999999999999887653
Q ss_pred ---cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhh
Q 011470 194 ---FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRF 270 (485)
Q Consensus 194 ---~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (485)
..+||+.|++.++..++........||+|++..+++ ++++.+.+.
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~ 210 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPI 210 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCH
Confidence 237999998877666665555566677653211100 001111223
Q ss_pred HHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 011470 271 SELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALL 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 347 (485)
++.++++. ++ .+......+...........+.|.+. ++.|.+... .......+..+++.++.+++.||++||+.+
T Consensus 211 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 211 RETLTKHR-KP-FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHhch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33333322 11 22222222233333445566777777 456776655 444556778889999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH-HH
Q 011470 348 IISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA-TL 426 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~ 426 (485)
.....+..+.............. .+.......+.+.+.+... +...++..|.+|++.|+++.++. +.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~ 356 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALLDSGS-----------FTLFFFLVLGLALIGGMYT-GPMGSFLPELFPTEVRYTGASLAYNL 356 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCccceeeEeeehhHh
Confidence 65544443322111111110000 1222233333344443333 34458999999999999999985 45
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 011470 427 ANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 427 ~~~~g~~~~~~i~g~~~~~~~ 447 (485)
...+|..++|.+.|.+.|..+
T Consensus 357 ~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 357 AGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHcC
Confidence 566888899999999999554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=237.96 Aligned_cols=338 Identities=12% Similarity=0.085 Sum_probs=240.7
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA 129 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~ 129 (485)
+.++++..+..++..+..++.+|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34455566666788888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH---hhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----------
Q 011470 130 ISF---ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----------- 195 (485)
Q Consensus 130 ~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------- 195 (485)
+.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..++|.++..+
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 654 368999999999999999999999999999999999999999999999999999998776533
Q ss_pred -------------------cchhHHHhhHHHHHHHHHHhhc--cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHH
Q 011470 196 -------------------PWRILAVLGILPCTILITGLFF--IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNE 254 (485)
Q Consensus 196 -------------------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
+||++|++.++..++..+...+ .||.++ ++ +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~---------------------- 216 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-A---------------------- 216 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-c----------------------
Confidence 4999998755544443333322 343210 00 0
Q ss_pred HHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCC--Cchh--hHHHHHHHHHHHH
Q 011470 255 IKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGI--TSSD--VATLGLGALQVIA 330 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~--~~~~~~~~~~~~~ 330 (485)
++.+.....+++++++..+...+...+ ..........+.+.+.++.+. +... ...........+|
T Consensus 217 -------~~~~~~~~~~~~~~~~~~~~~~l~~f~----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 217 -------KQISFSASLSRLARIRHYREGVIAQFF----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred -------ccccchhhHHHHHhChhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 000011122334444433332222222 222333445667777665432 2221 2233344667899
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccc
Q 011470 331 TGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSE 410 (485)
Q Consensus 331 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
+++++++.||+++|+.+.+...+..+..++.... .. ......+.+.+++.+..+ |..++...+
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~-------------~~~~~~l~~~glf~s~~f-p~i~sl~~~ 348 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG-------------HVGLYCLTLCSAFMSLMF-PTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 9999999999999998877777666665555432 11 122344555556666555 566688888
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 411 ILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 411 ~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
..+++.+..+.++.... +|+.+.|++.|.+.|.
T Consensus 349 ~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 349 GLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred hhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 88877655555555544 9999999999999994
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=236.50 Aligned_cols=332 Identities=14% Similarity=0.126 Sum_probs=226.7
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLY 140 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (485)
.+......|.+|.+.+++|+++.+.+++.+.+.+++.++++++|+++||+|||+++..+..+..++.+++.++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 45666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGL 215 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~ 215 (485)
+.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+ +||+.|++.++..++ .++..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888889999999999999999999999999998888877654 899999986654443 44455
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhc
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
++.||+++.. ++++ +....+++.++++..+......... ..
T Consensus 181 ~~~~~~~~~~---~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 221 (394)
T PRK11652 181 RWMPETRPAD---ARRT--------------------------------RVLASYRTLLSNRRFNCYLLMLIGT----LA 221 (394)
T ss_pred HhCCccCccc---cchh--------------------------------HHHHHHHHHHcChHHHHHHHHHHHH----HH
Confidence 6678764210 0000 0111233334333322222221111 11
Q ss_pred chhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011470 296 GINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 296 ~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
.......+.+.+.++ .|.++.. .......++.+++..+.+++.||.+++... ......++.+.+.........
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 297 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGVM-- 297 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc--
Confidence 222333344445555 6776655 333344566677778888888887733222 222222222222111110000
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
..+.......+.+.+.+.. .+....+..|..| +++|++.++.+....+|+.+++.+.+.+.+.
T Consensus 298 --------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 298 --------NVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred --------cHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1122233334444444433 3444477778876 6789999999999999999999999887654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=241.54 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=216.5
Q ss_pred HHHHHHHHhhhhccccccccccch-hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 46 VLACVLIVALGPIQFGFTCGYSSP-TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
.+.++..+++.++....+...++- .+..+.+|.+...++.+.+.++++++|+++.+++|.|.||++..+.+....++++
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~ 122 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG 122 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence 344555566666666677654433 3444669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---------
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--------- 195 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------- 195 (485)
+..++....+|++.+++.|++.|+.++..+|....+++.|+.++||+..++++.+..++|.++|++++..+
T Consensus 123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~ 202 (495)
T KOG2533|consen 123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL 202 (495)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence 99988888999999999999999999999999999999999999999999999999999999999888662
Q ss_pred -cchhHHHhhHH-HHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc--cccchhhhH
Q 011470 196 -PWRILAVLGIL-PCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASS--SRRTTIRFS 271 (485)
Q Consensus 196 -~wr~~f~~~~~-~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 271 (485)
||||.|++.++ ..+..+++++++|+.|....-. +++|..-.. ++.++..... ++.+...++
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl-~~~ek~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 267 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL-TDEEKELVV--------------ERLRESPSGGIENKFKWKGFK 267 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEecCChhhcccc-chHHHHHHH--------------HHHHhccCCCcccccCHHHHH
Confidence 89999999554 4555888889999998521000 001000000 0111111111 112333444
Q ss_pred HhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHH----hcch
Q 011470 272 ELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADK----AGRR 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~----~~~~ 344 (485)
+.++.+. ++.+.+..++.....+++.+|.|.++++ .|++..+ ...++..++++++.+++|+++|| ..+|
T Consensus 268 ~a~~dp~----vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~ 343 (495)
T KOG2533|consen 268 EALKDPG----VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR 343 (495)
T ss_pred HHHhchh----HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 4444443 6666777777777788899999999988 3576555 67778899999999999999999 4555
Q ss_pred hHHHHHHH
Q 011470 345 ALLIISSV 352 (485)
Q Consensus 345 ~~~~~~~~ 352 (485)
........
T Consensus 344 ~~~~~~~~ 351 (495)
T KOG2533|consen 344 LLFIVFLC 351 (495)
T ss_pred HHHHHHHH
Confidence 54444333
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=235.52 Aligned_cols=342 Identities=14% Similarity=0.125 Sum_probs=232.0
Q ss_pred cccccccchhHH-HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 61 GFTCGYSSPTQT-AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 61 ~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
........+.+| .+.+++|++..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555566665 4667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHHH-HHHh
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTIL-ITGL 215 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~~-~~~~ 215 (485)
++.|++.|.+.+...+...++..|..|+++|+++.++.....++|.+++|.+++.+ +||..|++.++..++. ++..
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999999999988876 8999999876665554 3344
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhc
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
+++||+++. + +.++ ++....++.++++..+.......+..+.
T Consensus 180 ~~~~~~~~~---~-~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 221 (395)
T PRK10054 180 IWVQRSEKA---I-ATET-------------------------------GSVWSPSVLLQDKALLWFTCSGFLASFV--- 221 (395)
T ss_pred HHHhccccc---c-ccch-------------------------------hhhhhhhhhccCceehHHHHHHHHHHHH---
Confidence 445554210 0 0000 0000113334444433333222222221
Q ss_pred chhhHHHhHHHHHh---HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011470 296 GINGVVFYSSTIFE---SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGF 370 (485)
Q Consensus 296 ~~~~~~~~~~~~~~---~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (485)
......+.+.+.. +.+.+... .......+.........+++.||.++|+.+..+.....++...+.... .
T Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~-- 296 (395)
T PRK10054 222 -SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--N-- 296 (395)
T ss_pred -HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--h--
Confidence 1112223333332 22332322 222233344455567788999999999988888766666665554320 0
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-
Q 011470 371 VSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGG- 449 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~- 449 (485)
..+...+...+++.+.. ...|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.+..
T Consensus 297 ----------~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~ 364 (395)
T PRK10054 297 ----------SLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWS 364 (395)
T ss_pred ----------HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhh
Confidence 01122233333444433 223455578888999999999988765 56789999999999999955543
Q ss_pred hHHHHHHH
Q 011470 450 TFAIYTVV 457 (485)
Q Consensus 450 ~~~~~~~~ 457 (485)
.+.+.+.+
T Consensus 365 ~~~~~~~~ 372 (395)
T PRK10054 365 LFVILALA 372 (395)
T ss_pred HHHHHHHH
Confidence 34333333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=237.13 Aligned_cols=380 Identities=14% Similarity=0.110 Sum_probs=245.7
Q ss_pred ccchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-----chhH
Q 011470 40 RDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-----GRKG 114 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~ 114 (485)
++.++++...++.+.+. .+......++.+|...++.|.+..+++.. +.....+ ++.+++|+++||+ ||||
T Consensus 7 ~~~~~~~~~~~~~l~~~---~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr 81 (491)
T PRK11010 7 RIFQQPNSAILLILGFA---SGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR 81 (491)
T ss_pred HHHcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence 33344444444444433 46677778889999999999999999997 4444444 6899999999999 9988
Q ss_pred H-HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 115 S-LMIAAIPNIIGWLAISFA---RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 115 ~-~~~~~~l~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
. ++.+.++.+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.
T Consensus 82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~ 161 (491)
T PRK11010 82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG 161 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5 667877787888888775 478899999999999999999999999999999999999999999999999998876
Q ss_pred hhc-----cccchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccc
Q 011470 191 LGL-----FVPWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRR 265 (485)
Q Consensus 191 ~~~-----~l~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (485)
++. ..|||..|++.++..++..+..+++||+++.. +++++. ++.
T Consensus 162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~----------------------------~~~ 210 (491)
T PRK11010 162 LALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTL----------------------------EQA 210 (491)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccch----------------------------hhh
Confidence 554 34899999997766666555555678864210 000000 000
Q ss_pred chhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHH-HhHcCCCchhhHHH---HHHHHHHHHHHHHHHHHHHh
Q 011470 266 TTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTI-FESAGITSSDVATL---GLGALQVIATGVTTWLADKA 341 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~ 341 (485)
...+++++++++..+.......+.. ........+.+.+ .++.|++..+.... ...++.+++.+++|+++||+
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~----~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~ 286 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYK----LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL 286 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344444443222222221111 1122233344444 45678887763332 33468889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHH
Q 011470 342 GRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAG 421 (485)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (485)
++|+.+.++.++.++..+.+......... .+......++.....+.+... .+++..+..+++.+++..
T Consensus 287 g~~~~l~i~~~l~~l~~l~~~~l~~~~~~-----------~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~~ 354 (491)
T PRK11010 287 SLFRALMIFGILQGVSNAGYWLLSITDKN-----------LYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQF 354 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHH
Confidence 99887776655544444333221111100 011111222222222222222 347888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhccc
Q 011470 422 SVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 422 g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
|+.+....+|..+++.+.|.+.|..++...+.+..++.+..++.....++
T Consensus 355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999544444444444444444444444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=229.23 Aligned_cols=325 Identities=16% Similarity=0.163 Sum_probs=227.4
Q ss_pred ccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011470 64 CGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGR 143 (485)
Q Consensus 64 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r 143 (485)
....++.+|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988888877 788999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------cchhHHHhhHHHHHHHHHHhhc
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------PWRILAVLGILPCTILITGLFF 217 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~~~~~~~~~ 217 (485)
++.|++.+...+.....+.|++| ++|+++.++.+.+.++|..+++.++..+ +||+.|...++..++.. ..+
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~ 171 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAW 171 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence 99999999988888889999986 6899999999999999998888776544 39988876544333322 223
Q ss_pred cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcch
Q 011470 218 IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGI 297 (485)
Q Consensus 218 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (485)
+|+.++. + + ++++..+...++.++++..+ ...+..+.....+
T Consensus 172 ~~~~~~~---~-~------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 213 (355)
T TIGR00896 172 IPQVRRR---V-A------------------------------ANQTTTRLTPVRIWRSPLAW----QVTVFFGLQSGLY 213 (355)
T ss_pred hhhhccc---c-C------------------------------CCCCCCCCCCchhhcCHhHH----HHHHHHHHHHHHH
Confidence 3443210 0 0 00000111223334433322 2222222222334
Q ss_pred hhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 298 NGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAG-RRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
.....+.|.+.++.|.+... .......++.++++++.|++.||++ ||+.+..+..+.+++.+.+......
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 286 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH------- 286 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 55667888888888887655 4555668889999999999999994 5556666666666665544432110
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhcc-ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMS-EILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
... ....+++.+.+.. .+...+... +..++++++...++.+...+++..++|.+.|.+.|..+
T Consensus 287 --------~~~-~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 --------GLW-AWALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred --------HHH-HHHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011 1223333333322 233334444 34345677899999999999999999999999999544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=228.92 Aligned_cols=352 Identities=12% Similarity=0.136 Sum_probs=216.6
Q ss_pred cccccccchhHHH-HHhhhCCCchhhhHHHHHHHH-HHHHHHHhHHHHHhhhchhHHH-HHHHHHHHHHHHHHHHhhhHH
Q 011470 61 GFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNV-GAMVGAITSGQISEYIGRKGSL-MIAAIPNIIGWLAISFARESS 137 (485)
Q Consensus 61 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~-~~~~~l~~~~~~~~~~~~~~~ 137 (485)
++......|.+|. +.+++|++.+++|++.+...+ ++.++.++.|+ +||+||||.+ ..+.++.+++..+.+++++++
T Consensus 28 ~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (393)
T PRK15011 28 GIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYF 106 (393)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556677665 678999999999999876655 55566655555 9999998875 556666678888889999999
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-
Q 011470 138 FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLR--GALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI- 210 (485)
Q Consensus 138 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~- 210 (485)
.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.+++|++++.+ |||..|++.++..++
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~ 186 (393)
T PRK15011 107 VLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVC 186 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 887666555555557788888888998876655 3455788888899999998888655 999999987665554
Q ss_pred HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHH
Q 011470 211 LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLI 290 (485)
Q Consensus 211 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (485)
.+..++++||.++. +++ ++ .+.+. .+ .+++.. ...+....
T Consensus 187 ~~~~~~~~~~~~~~---~~~-~~---------------------------~~~~~----~~--~~~~~~---~~~~~~~~ 226 (393)
T PRK15011 187 GVMVWLFLPSMRKE---LPL-AT---------------------------GTLEA----PR--RNRRDT---LLLFVICT 226 (393)
T ss_pred HHHHHhhcCccCCC---Ccc-cc---------------------------ccccc----cc--cccccH---HHHHHHHH
Confidence 45556667876421 000 00 00000 00 001111 11111111
Q ss_pred HHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011470 291 LQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFV 367 (485)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (485)
. .+........+.|.+.+ +.+.++.+ .......+..+++.++.|+++||++||+.+..+.....+....+...
T Consensus 227 ~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--- 302 (393)
T PRK15011 227 L-MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--- 302 (393)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 11223334456676664 46777655 33333456677889999999999999987766554443332222111
Q ss_pred hcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 368 KGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
.. .+..+....+.....+.... ....+..|..|+ +++++.++.+...++|..++|.+.|.+.|..+
T Consensus 303 ~~------------~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 303 HS------------PAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred hh------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10 11112222222222222211 223667788774 59999999999999999999999999999544
Q ss_pred chhHHHHHHHHHHHHHHHHHhccc
Q 011470 448 GGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
+........+..+..++.++..||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 369 YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 433333344444444444444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=229.13 Aligned_cols=350 Identities=13% Similarity=0.038 Sum_probs=243.6
Q ss_pred hhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHH----HHHHHHHHHHHHHH
Q 011470 55 LGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSL----MIAAIPNIIGWLAI 130 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~----~~~~~l~~~~~~~~ 130 (485)
+.++...+..+...|.+|.+.+|+|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 44445556678888999999999999999999999999999999999999999999985433 233222222 244
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHH
Q 011470 131 SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGIL 206 (485)
Q Consensus 131 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~ 206 (485)
.++++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+ |||..|++...
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 5678999999999999999988889988887765 46789999999999999999999887766 89999887554
Q ss_pred HHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHH
Q 011470 207 PCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGI 286 (485)
Q Consensus 207 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (485)
..++.++.....|+.++. ++.+ +++.++....+++++++..+. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~----~ 210 (382)
T TIGR00902 167 GLAFMLIGFLIKPTIPPK----DAIP----------------------------EDESQGDSAFIALLKNPMNLR----F 210 (382)
T ss_pred HHHHHHHHHHcCCCCCCC----cccc----------------------------ccccccchhHHHHHcChHHHH----H
Confidence 433333333333332210 0000 000011112344555543322 2
Q ss_pred HHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
.+..+...........+.+.+.++.|.++.. .......+..+++..+.+++.||+++|+.+.++.+...+....+...
T Consensus 211 l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 211 LAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222333333555666777788888887766 44445567788889999999999999999998888888887766543
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT-LANWLTVWLITMTANLLL 443 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~i~g~~~ 443 (485)
. ..+..+....+.+..++...... ..++.+. |++.++++.++.+ ....+|..++|.+.|.+.
T Consensus 291 ~---------------~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 291 E---------------AFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred h---------------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11233444455555665554444 3788888 9999999999986 456799999999999999
Q ss_pred HhhcchhHHHHHHHHHHH
Q 011470 444 NWSGGGTFAIYTVVSAFT 461 (485)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~ 461 (485)
|..+...+...+++.++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~ 371 (382)
T TIGR00902 354 PTLGAGTFVFMAIIAAAA 371 (382)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 965555566665555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=232.96 Aligned_cols=356 Identities=15% Similarity=0.176 Sum_probs=251.6
Q ss_pred HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhh
Q 011470 75 TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ESSFLYMGRLLEGFGVGI 152 (485)
Q Consensus 75 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~ 152 (485)
..+++++..|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++- +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 557899999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred hhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHH-HHHHhhccCCchhHHH
Q 011470 153 ISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTI-LITGLFFIPESPRWLA 226 (485)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~ 226 (485)
.+|+...+..+|.|++||++..++...+..+|.+++.++++.+ ||+..|++.++.+++ .++.+++..|+|+.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999999887766655 899999997766666 45555666777743
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccc--chhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhH
Q 011470 227 KMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRR--TTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYS 304 (485)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (485)
++.. ...|.+.+++...+++.+ .+.+++++++++. +++..+..+....+...+..|.
T Consensus 223 -h~~i----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 223 -HPNI----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred -CCCC----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 111222222222222222 4678888887765 6777777777777888899999
Q ss_pred HHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcch--------h-HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011470 305 STIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKAGRR--------A-LLIISSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 305 ~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
|.|+++. +++... +...+..+...+..+++|.++||+.+| | .-.++....+++++.+....
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~------- 354 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS------- 354 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC-------
Confidence 9999864 666544 666777889999999999999998652 1 11223333333333332221
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-h---hcc
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-W---SGG 448 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~---~~~ 448 (485)
+.. .+..++.+.+.....+.. .+-.+.-..+. .+++.+..+|+.+....+.++++|.+.|.+.. . ...
T Consensus 355 ~~~------~~~a~~~l~~~~~~~g~~-~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~ 426 (466)
T KOG2532|consen 355 DEH------RLLAVILLTIAIGLSGFN-ISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR 426 (466)
T ss_pred CCc------chHHHHHHHHHHHHcccc-hhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence 100 011222222222222211 12222333333 45889999999999999999999999999884 1 223
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011470 449 GTFAIYTVVSAFTVAFVSIW 468 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~ 468 (485)
..|.+.+++.++..++..++
T Consensus 427 ~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 427 IVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHhchheeEe
Confidence 34555555555555443333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=233.20 Aligned_cols=337 Identities=16% Similarity=0.146 Sum_probs=220.9
Q ss_pred hhhccccccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 011470 55 LGPIQFGFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA 133 (485)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~ 133 (485)
++.+....+....++..|. +++++|+++.+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~ 87 (366)
T TIGR00886 8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA 87 (366)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566778889995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHh----hc----------cccch
Q 011470 134 R-ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL----GL----------FVPWR 198 (485)
Q Consensus 134 ~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~----~~----------~l~wr 198 (485)
+ +++.+++.|+++|++.+. .+....++.|++|+++|+++.++.....++|..+++.+ .. ..+||
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 9 999999999999998664 56678899999999999999999886666665555443 33 23799
Q ss_pred hHHHh--hHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc
Q 011470 199 ILAVL--GILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276 (485)
Q Consensus 199 ~~f~~--~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
+.|++ ..+..+..++...+.+|+|+.. +++++... .+... ..+++......+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~ 224 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGADTPPGK---PATGKLSF-------KGARW------------SVGTGALGDQLKVFRD 224 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCCccc---ccchhccc-------ccccc------------cccchhHHHHHHHHhc
Confidence 99843 3333344455555667765311 00000000 00000 0000000122333444
Q ss_pred ccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 011470 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVG 353 (485)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 353 (485)
+..+. ..+..+...........+.+.+.++ .|.++.+ .......+.+++++++.+++.||+++|+....+...
T Consensus 225 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 300 (366)
T TIGR00886 225 RHTWI----LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG 300 (366)
T ss_pred cchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence 33222 2222222222344556667777754 5777655 344456778889999999999999998877766655
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLT 431 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (485)
...+..++....... ...........+...+.+.+... .+....+..| +++|++.|+.+...++|
T Consensus 301 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 301 VAMGAFLVVLGLVSP-----------LSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHhcCCCc-----------chHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555544443321100 01112223333333444443333 4477888876 68999999999887765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=226.84 Aligned_cols=361 Identities=10% Similarity=0.021 Sum_probs=231.1
Q ss_pred cccccc-chhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 62 FTCGYS-SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGR-KGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 62 ~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
...+.. ++..+.+.+++|++..|+|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344444 455666778899999999999999999999999999999999965 888898999998999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhc--------CCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEI--------APQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
++.|++.|++.+...+...++..++ .....|.+..| .+|.+++|++++.+ .|+. |++.++.
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~ 168 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGS 168 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHH
Confidence 9999999998877777766654322 22233445544 24555555555544 3443 4454444
Q ss_pred HHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHH
Q 011470 208 CTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIG 287 (485)
Q Consensus 208 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (485)
.++..+..+++||+|+.. +++++ +.++..+...+++++++..........
T Consensus 169 ~~~~~~~~~~~~e~~~~~---~~~~~---------------------------~~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 169 SALLGVFALTLPDIPVAK---STAKM---------------------------SIKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred HHHHHHHHhcCCCCCCCc---ccccc---------------------------CHHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 444444556788875310 00000 000000111233444443333222222
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHcCCCc--------h--hhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIFESAGITS--------S--DVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
+... .......+.+.+.++.|.++ . ........+..+++.+..+++.||+|+|+.+..+.++..++
T Consensus 219 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 219 LLGA----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR 294 (418)
T ss_pred HHHh----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2211 12233455566666666443 1 24444556778889999999999999999999888877776
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH-HHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT-LANWLTVWLIT 436 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~ 436 (485)
..++.... .. ....+..++..++.+.+.+.. .+....++.|.+|++.|+++.|+.+ ....+|.+++|
T Consensus 295 ~~l~~~~~---~~--------~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp 362 (418)
T TIGR00889 295 FGFFAYGD---PE--------YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGY 362 (418)
T ss_pred HHHHHHcC---cc--------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 65554320 00 001112223333444444332 3443478899999999999999997 56789999999
Q ss_pred HHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 437 MTANLLLNWSG-------GGTFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 437 ~i~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
.+.|.+.|..+ ...+...+++.++..++.+++.+|++++
T Consensus 363 ~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 363 ILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999532 2345566666666777777777777554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=220.77 Aligned_cols=340 Identities=13% Similarity=0.043 Sum_probs=226.8
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchh----HHHHHHHHHHHHHHHHHHHhhhH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRK----GSLMIAAIPNIIGWLAISFARES 136 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr----~~~~~~~~l~~~~~~~~~~~~~~ 136 (485)
....+...|.+|.+.+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++
T Consensus 17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 94 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSF 94 (382)
T ss_pred HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccH
Confidence 34567788999999999999999999999999999999999999999999984 3333222222 22333446889
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHH
Q 011470 137 SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILI 212 (485)
Q Consensus 137 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~ 212 (485)
|.+++.|++.|++.+...+...++..++ +++|+++.+......++|.+++|++++.+ |||..|++.++..++..
T Consensus 95 ~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 95 WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 9999999999999998999888888877 35677888888888888888888888765 89999988665444444
Q ss_pred HHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHH
Q 011470 213 TGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQ 292 (485)
Q Consensus 213 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (485)
+..++.||.++. ++++ ++.++...+++++++++..+.......+...
T Consensus 173 ~~~~~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~- 219 (382)
T PRK11128 173 LGQLLRPTIMPQ----GESR----------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQG- 219 (382)
T ss_pred HHHHccCCCCCc----cccc----------------------------cccccccchHHHHHcChhHHHHHHHHHHHHH-
Confidence 444445553210 0000 0000112345566666543333222222222
Q ss_pred hhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011470 293 QLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGF 370 (485)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (485)
.......+.+.+.++.|.+... .......+..++..++.+++.||+++|+.+..+....+++.+++....
T Consensus 220 ---~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~----- 291 (382)
T PRK11128 220 ---SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT----- 291 (382)
T ss_pred ---HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 2334445556677778887655 333344667788889999999999999998888777777655544321
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcch
Q 011470 371 VSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT-LANWLTVWLITMTANLLLNWSGGG 449 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~i~g~~~~~~~~~ 449 (485)
..+..++..++.+..++...... ..+..+. +++++++..+..+ .....|..++|.+.|.+.|..+..
T Consensus 292 ----------~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~ 359 (382)
T PRK11128 292 ----------ALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG 359 (382)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 11233344444455554433333 3667776 5667788898886 445677789999999999965544
Q ss_pred hHHHHHHH
Q 011470 450 TFAIYTVV 457 (485)
Q Consensus 450 ~~~~~~~~ 457 (485)
.+...+++
T Consensus 360 ~~~~~~~~ 367 (382)
T PRK11128 360 VFWVMALV 367 (382)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=224.64 Aligned_cols=360 Identities=14% Similarity=0.063 Sum_probs=211.9
Q ss_pred cccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---Hhh-----h
Q 011470 65 GYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS---FAR-----E 135 (485)
Q Consensus 65 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~-----~ 135 (485)
+...+.+|. +.+++|+++.+.|++.+++.+++.++++++|+++||+|||++++++..+.+++..... .++ .
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566664 5566999999999999999999999999999999999999999887766655433221 111 1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTILI 212 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~~~ 212 (485)
.....+.+++.|.+.....+....+..+. ++++++..+......++|..++|++++.+ +|++.|++.++..++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~ 184 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL 184 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence 11122333444443333333333333222 34567788888888888888888888766 89999998776666544
Q ss_pred HHhhcc-CCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHH
Q 011470 213 TGLFFI-PESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLIL 291 (485)
Q Consensus 213 ~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
+..++. +|+++....+++ + + +++++.+.......++++..+...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~-~------------------------~--~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 185 VLLFFAKPDAPSTAKVANA-L------------------------G--ANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHhcccccccchhhhccc-h------------------------h--cccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 444444 343321000000 0 0 00001111122334444433332222222211
Q ss_pred HhhcchhhHHHhHHHHHhH----cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 011470 292 QQLSGINGVVFYSSTIFES----AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSF 365 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~----~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (485)
. +.....+.|.+..+ .+.+... .......+...++.++.|++.||+++|+.+..+..+..++.+++....
T Consensus 238 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~ 313 (420)
T PRK09528 238 F----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT 313 (420)
T ss_pred H----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1 12222233333332 2343333 334445667789999999999999999998887777766665554321
Q ss_pred HhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011470 366 FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSV-ATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~i~g~~~~ 444 (485)
..+..+....+.+...+... +....++.|.+|++.+++..+. .+....+|.+++|.+.|++.|
T Consensus 314 ---------------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 314 ---------------GPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 01122222233333332222 2233677888899999888766 677888999999999999999
Q ss_pred h-hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 445 W-SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 445 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
. +....+...+++.++..++.....++++
T Consensus 378 ~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 378 SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4 5445566566666555555555555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=233.51 Aligned_cols=405 Identities=16% Similarity=0.120 Sum_probs=269.7
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
..-+-|.+++...+......-.....+...+.+++++|.+..+++|+.++....+.+..|+.+.+.||+|.|++.+.|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 33445555555555544333334445578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c
Q 011470 122 PNIIGWLAISFARESSFLYMGR-LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P 196 (485)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~ 196 (485)
+.++|.++.+|++++|++++.. ++.|+|.|..+..+..++..+|+ |+|+.+.|+...+.++|.++-|.+...+ |
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 9999999999999999998887 99999999999999999998886 7789999999999999999888877666 9
Q ss_pred chhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHH------------HhCCCc-chH---HHHHHHHHHH
Q 011470 197 WRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQV------------LRGFDT-DIS---IEVNEIKRSV 259 (485)
Q Consensus 197 wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~---~~~~~~~~~~ 259 (485)
||+.+++.+.+.+- .......-|.+++.... .++..+.... ....+. ..+ .+.....+..
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP 275 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence 99998875444443 33333444433321111 0000000000 000000 000 0000000000
Q ss_pred hhcc-ccchhhh----HHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHH
Q 011470 260 ASSS-RRTTIRF----SELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATG 332 (485)
Q Consensus 260 ~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~ 332 (485)
++.. ...+... .++++. +.++.+.+...+...++.....++|.+.++.+++... ......++..+++++
T Consensus 276 ~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 276 DKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred ccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhh
Confidence 0000 0111111 233433 3466666666666667788888999999998998776 555667899999999
Q ss_pred HHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccc
Q 011470 333 VTTWLADKAGRRA--LLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSE 410 (485)
Q Consensus 333 ~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
+.|+++|+...++ ...++.+..+++.+...... ....++...++.......+.......+.|
T Consensus 352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~----------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~ 415 (509)
T KOG2504|consen 352 ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT----------------TYVGLIVFSILFGFCVGSFSSLTPVILVD 415 (509)
T ss_pred hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987433 34444444444443333221 11122222222222222233444468899
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 411 ILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 411 ~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
..+.++-..+.|+...+..++..+||++.|.+.|. +.+.....+.+++.+....+++..+
T Consensus 416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999994 4344445555555555554444444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=217.83 Aligned_cols=357 Identities=14% Similarity=0.092 Sum_probs=230.2
Q ss_pred hhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-----chhH-HHHHHHHHHHHHHHH
Q 011470 56 GPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-----GRKG-SLMIAAIPNIIGWLA 129 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~~~~~~~l~~~~~~~ 129 (485)
-++..++..+.....+|.+-++.|++.+++|++..+... .+..+++|+++||+ |||| .++++.++.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 345557777888889999999999999999999777775 69999999999999 8765 788888888888888
Q ss_pred HHHh---hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc-----ccchhHH
Q 011470 130 ISFA---RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF-----VPWRILA 201 (485)
Q Consensus 130 ~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----l~wr~~f 201 (485)
.++. ++++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+||..|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 8887 4578888888888999999999999999999999999999999999999999998875543 3899999
Q ss_pred HhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchh
Q 011470 202 VLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFP 281 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (485)
++.++..++..+..++.||+++.. ++.++. .++....++++++++..+.
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVPA---RPPRSL----------------------------GEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccc---cccchh----------------------------HHHHHHHHHHHHhCcCHHH
Confidence 986665555545556677764310 000000 0001223455666665444
Q ss_pred HHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHH--HHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 011470 282 LTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATL--GLG-ALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 358 (485)
......+...... .......+.+.++.|.++...... ..+ ++.+++.++.+++.||+++|+.+..+..+..+..
T Consensus 214 ~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 214 LLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333322222111 111223344556678877664333 223 4578899999999999999988776666555444
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHH----HHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVV----AMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWL 434 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 434 (485)
+.+......... .+....... ..+...+ ...+....++.+.+|.+ ..+..+....++...
T Consensus 291 l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 354 (402)
T PRK11902 291 LGYWVLAVTPKH-----------LWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSAT----QYALLSALASVGRVY 354 (402)
T ss_pred HHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHH
Confidence 333221111100 111122211 1112222 22233346666666654 445556666777777
Q ss_pred HHHHHHHHHHhhcchh-HHHHHHHHHHHHHH
Q 011470 435 ITMTANLLLNWSGGGT-FAIYTVVSAFTVAF 464 (485)
Q Consensus 435 ~~~i~g~~~~~~~~~~-~~~~~~~~~~~~~~ 464 (485)
++.+.|.+.|..++.. +...+.++++...+
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 7778999999444443 44444444444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=201.50 Aligned_cols=355 Identities=14% Similarity=0.119 Sum_probs=257.5
Q ss_pred HHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 011470 51 LIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI 130 (485)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~ 130 (485)
+.+..-.++.++......+.+|.+++.|+++..|.+++..+++.+|.+.+++.|++.+|+|+|+.++.|+.+.++++.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33344445557888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred H---HhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------------
Q 011470 131 S---FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------------ 195 (485)
Q Consensus 131 ~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------------ 195 (485)
. ...+|..++++-++.|.|.+...+.++.++....++++..+.+.+.+...++|.+++|++++.+
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 5 5678999999999999999999999999999999998889999999999999999999988654
Q ss_pred -----------cchhHHHhhHHHHHHHHHHhhc--cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 011470 196 -----------PWRILAVLGILPCTILITGLFF--IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASS 262 (485)
Q Consensus 196 -----------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (485)
.||++|...+...+++.+.... .|+.+.. ..+.
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~ 221 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSL 221 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cccc
Confidence 2777777755444443333333 3443210 0011
Q ss_pred cccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 263 SRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
.+.++....+++++++.+.-.+...++.. .......|.+.+..+ .|.+..+ ........+.++|++++.++.+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 222 GASGSAGLSSLFQNKHLRLGVLAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred cccccchHHHHHhChHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111145666777765554444444444 455667777888777 5766555 5555667888999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh
Q 011470 340 KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (485)
|+...|.+.+...+..+.++...+.. ....+..+.+.+.+.+..+ |..++...+..| ++..
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~~----------------g~v~~~~l~~ig~F~simf-PTIfslal~~l~-~~ts- 358 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALIG----------------GVVALYALFLIGLFNSIMF-PTIFSLALKNLG-EHTS- 358 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHHhHHHH-HHHHHHHHhccC-cccc-
Confidence 99998888876655555444444331 1244555566666666554 444588888888 4333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHH
Q 011470 420 AGSVATLANWLTVWLITMTANLLLNWSGGG-TFAIYTVVSAFTV 462 (485)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~-~~~~~~~~~~~~~ 462 (485)
..|..-.....|+++.|++.|++.|..+.. .+.....+|.+..
T Consensus 359 ~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 359 VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344445555689999999999999954433 3333444554444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=214.03 Aligned_cols=356 Identities=14% Similarity=0.075 Sum_probs=220.3
Q ss_pred cccccccchhHHHH-HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHh---
Q 011470 61 GFTCGYSSPTQTAI-TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI---SFA--- 133 (485)
Q Consensus 61 ~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~--- 133 (485)
........|.+|.. .+++|.++.+.|++.+++.+++.+++++.|+++||+|||+.++.+....+++.... .+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (396)
T TIGR00882 15 FFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL 94 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555666777764 56799999999999999999999999999999999999999998777665544332 112
Q ss_pred --hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHH
Q 011470 134 --RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPC 208 (485)
Q Consensus 134 --~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~ 208 (485)
+....+.+.|++.|++.+...+....+..|..+ +++...+......++|.+++|.+++.+ +||..|++.++..
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHH
Confidence 233455677899999988888888888777543 334566667777788888888887755 8999999876665
Q ss_pred HHHHHHhhc-cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHH
Q 011470 209 TILITGLFF-IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIG 287 (485)
Q Consensus 209 ~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (485)
++..+..++ .||+|+... + ++ ....++++.+..+.+++++++..+...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~---~-~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~-- 223 (396)
T TIGR00882 173 LILMLLLMFAKPKAPSSAT---V-AN-----------------------ALGANASAFSLKLALELFRQRKFWMFVLY-- 223 (396)
T ss_pred HHHHHHHHHhCCCCchhhh---h-hc-----------------------ccccccCCCCHHHHHHHHcCCcHHHHHHH--
Confidence 554333333 444432100 0 00 00000111112234555555543222221
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHc----CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIFESA----GITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
.+.....+.....+.+.+.++. +.+... .......+...++.+..+++.||+++|+.+.++..+.++...+.
T Consensus 224 --~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~ 301 (396)
T TIGR00882 224 --VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGS 301 (396)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 1111112233333445554443 232222 33444566778888999999999999999888777666655543
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSV-ATLANWLTVWLITMTAN 440 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~i~g 440 (485)
... .+ .+.......+.+.+.... ......+..+..|++.++++.+. .+....+|++++|.+.|
T Consensus 302 ~~~---~~------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 302 SFA---TT------------ALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred Hhc---CC------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 321 11 112222222333322211 11223566777788888887766 57889999999999999
Q ss_pred HHHHh-hcchhHHHHHHHHHHHHHHH
Q 011470 441 LLLNW-SGGGTFAIYTVVSAFTVAFV 465 (485)
Q Consensus 441 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 465 (485)
++.|. +....+.+.+++.++..+..
T Consensus 366 ~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 366 NMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99994 55555666565555554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=246.74 Aligned_cols=359 Identities=12% Similarity=0.013 Sum_probs=231.4
Q ss_pred Hhhhhccccccccccchh-HHHHHhhhCCCc-hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH---HHHHHHHHH
Q 011470 53 VALGPIQFGFTCGYSSPT-QTAITRDLELTL-SEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI---AAIPNIIGW 127 (485)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~---~~~l~~~~~ 127 (485)
..++.+.+++....+... ...+.++.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.++.++..
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~ 99 (1140)
T PRK06814 20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALA 99 (1140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333 234555555543 347888999999999999999999999999997533 223333333
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHh
Q 011470 128 LAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVL 203 (485)
Q Consensus 128 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~ 203 (485)
+.....+|+++++++|+++|++.+...|+..+++.+++++++|++++++.+++.++|.++||++++++ +|++.|+.
T Consensus 100 ~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 100 IYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33344589999999999999999999999999999999999999999999999999999999999887 89999865
Q ss_pred hHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHH
Q 011470 204 GILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLT 283 (485)
Q Consensus 204 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (485)
.++..++.++..+++|+++... ++...+. .. .++....++.+++++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~--------~~~~~~~~~~~~~~~~~~~~~ 231 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKTGNAA--PDLKIDR------------------NI--------IRSTITLLKYAKADKRIWLAI 231 (1140)
T ss_pred HHHHHHHHHHHHhhCCCCCCCC--CCCeecc------------------ch--------HHHHHHHHHHHhcCchHHHHH
Confidence 6666666666667777654210 0000000 00 000111344455555433333
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
+...+.. .....+..+.|.+.++ .|.++.. ......+++.+++.++.+++.|+..+++.+..+.++.+++.+.
T Consensus 232 ~~~~~~~----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 232 LGISWFW----LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHHHHHH----HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 3322222 2234455567777765 5776655 5555668889999999999998877766655555544444433
Q ss_pred HHHHHHhhcccCCCCc------chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSS------CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWL 434 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 434 (485)
+.+....... ..... ......+...+..++++++.+....+. .+++.+..|++.+|+++|+.++...++..+
T Consensus 308 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i 385 (1140)
T PRK06814 308 LAFASSSVPA-EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVA 385 (1140)
T ss_pred HHhccccccc-ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence 3321000000 00000 000011223344444454444443444 488999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 011470 435 ITMTANLLLNW 445 (485)
Q Consensus 435 ~~~i~g~~~~~ 445 (485)
++.+.+.+.+.
T Consensus 386 g~~~~g~l~~~ 396 (1140)
T PRK06814 386 GTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=213.37 Aligned_cols=328 Identities=12% Similarity=0.070 Sum_probs=218.7
Q ss_pred cccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHHHh---
Q 011470 63 TCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-----GRKGS-LMIAAIPNIIGWLAISFA--- 133 (485)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~l~~~~~~~~~~~--- 133 (485)
.....++.+|.+.+|+|+|.++.|+.... .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred CchhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34566788999999999999999999765 555555 99999999998 89887 567777888887777777
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c--------chhHH
Q 011470 134 RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P--------WRILA 201 (485)
Q Consensus 134 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~--------wr~~f 201 (485)
.+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ + ||..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 56677888888899999999999999999999999999999999999999999998887544 6 99999
Q ss_pred HhhHHHHHHHHHHhh-ccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccch
Q 011470 202 VLGILPCTILITGLF-FIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF 280 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
++.++..++.++..+ ..||+++. +++.++ + +++.+..++++++++..+
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~-----------------~-----------~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEPQED---ASVPKP-----------------L-----------TQAVLKPIREFFQRKNMI 209 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcc---cccchh-----------------H-----------HHHHHHHHHHHHHhcCch
Confidence 997776666554444 45664321 000000 0 000112344455544322
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhH--HHHHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVA--TLGLG-ALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
+....... .+...........+.+.+.++.|+++.+.. ....+ +..+++.++++++.||+|+|+.+..+.++.++.
T Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 210 QALLLLLL-IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22222222 222223345566677777777888777633 32333 567899999999999999999888777776665
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANW 429 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 429 (485)
...+..........+.+. ...+......++..++.+.. .+...++..|.+|+++||+.+|+.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 289 NAGFVWLASNGHHDGITF----PHLLMLFLTITLEAVTGGLG-TVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcCccccccc----chHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 554443211110000000 01122222233333333333 34445999999999999999999877653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=217.02 Aligned_cols=361 Identities=10% Similarity=0.042 Sum_probs=219.3
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIAAIPNIIGWLAISFARESSF-LYMGRLLE 146 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~r~l~ 146 (485)
.....+.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++++... ++++|+++
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34456788899999999999999999999999999999999 99999999999999999999999876554 55899999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 147 GFGVGIISYTVPVYIAEIAPQN--LRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
|+|.|...|...+++.|.+|++ +|+++.++++.+.++|.+++|.+++++ |||+.|++..+..++.++.+...++
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~ 195 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRG 195 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcch
Confidence 9999999999999999999877 457789999999999999888877666 8999999865544444444444332
Q ss_pred chhHHH--hcCCHHHHHHHHH----------HH--hCCCcchHHHHHHHH----H--HHhhccccchhhhHHhhhcccch
Q 011470 221 SPRWLA--KMGMTEDFEASLQ----------VL--RGFDTDISIEVNEIK----R--SVASSSRRTTIRFSELKQRRYYF 280 (485)
Q Consensus 221 ~p~~~~--~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
..+... .+++..+...... .. ............... . -..++.+. ++.+|++...
T Consensus 196 ~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r~~~ 270 (489)
T PRK10207 196 MVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL-----DKTGRNKMFV 270 (489)
T ss_pred hhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHH
Confidence 211100 0011111111000 00 000000000000000 0 00000000 0222222211
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhH-c-----CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcchh-------H
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFES-A-----GIT-SSDVATLGLGALQVIATGVTTWLADKAGRRA-------L 346 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~ 346 (485)
... +.+.....+..+.......+.+.++ . |+. +.........+..++..++.+++.||+++|+ .
T Consensus 271 ~~~--l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k 348 (489)
T PRK10207 271 AFV--LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK 348 (489)
T ss_pred HHH--HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 111 1111222222233333344444442 2 221 1112223334556677888899999999886 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHH
Q 011470 347 LIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATL 426 (485)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 426 (485)
+.++.++.+++++.+..........+.. ...++.+...++.+.+.... .+....++.+..|++.+|.++|+.+.
T Consensus 349 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~-----~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 349 FTLGMFLCSLGFLTAAAAGMWFADAQGL-----TSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCc-----cCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 6667677666665443221111110000 11233334444555555443 44445888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011470 427 ANWLTVWLITMTANLL 442 (485)
Q Consensus 427 ~~~~g~~~~~~i~g~~ 442 (485)
..++|+.++..+.+..
T Consensus 423 ~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 423 TQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=242.84 Aligned_cols=333 Identities=11% Similarity=0.035 Sum_probs=225.3
Q ss_pred ccchhHHHHHhhhCCCch--hhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH---HhhhHHHHH
Q 011470 66 YSSPTQTAITRDLELTLS--EFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS---FARESSFLY 140 (485)
Q Consensus 66 ~~~~~~~~i~~~~~~s~~--~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~~~~~~~ 140 (485)
....+.+.+.++++.+.. ..+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (1146)
T PRK08633 28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF 107 (1146)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 334455667677776544 479999999999999999999999999999999998877665555443 457899999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-------------cchhHHHh-hHH
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-------------PWRILAVL-GIL 206 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-------------~wr~~f~~-~~~ 206 (485)
++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++ +|++.+.+ ...
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888665 13333333 223
Q ss_pred HHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHH
Q 011470 207 PCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGI 286 (485)
Q Consensus 207 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (485)
..++.++..+.+||+|+....+.+.++ ..........++.+++++..+...+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFDKKK--------------------------YLFPKLLWRNLKLLRSDRVLWLAIIGL 241 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCcccccccc--------------------------cccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333344555667877642111100000 000000112234455444433322222
Q ss_pred HHHHHHhhcchhhHHHhHHHHH-hHcCCCch-h--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIF-ESAGITSS-D--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
.+..+ .......+.|.+. +..|.+.. . .......++.+++.++.+++.||+++++.+.++.++.+++.+++.
T Consensus 242 ~~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 317 (1146)
T PRK08633 242 SYFWF----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP 317 (1146)
T ss_pred HHHHH----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH
Confidence 22222 2233444455555 45687766 4 455566788889999999999999998888777776666655554
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLL 442 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~ 442 (485)
... ..+..++..++++++.+....+. .+++.+..|++.||+++|+.+++.++|..+++.+.+.+
T Consensus 318 ~~~---------------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 318 TAP---------------SLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred Hhh---------------hHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 321 11223333444444444433343 48888999999999999999999999998888877766
Q ss_pred HH
Q 011470 443 LN 444 (485)
Q Consensus 443 ~~ 444 (485)
..
T Consensus 382 ~~ 383 (1146)
T PRK08633 382 SG 383 (1146)
T ss_pred HH
Confidence 54
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=209.19 Aligned_cols=357 Identities=13% Similarity=0.109 Sum_probs=227.0
Q ss_pred cccccchhHHHHHhhhCCCchh-hhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011470 63 TCGYSSPTQTAITRDLELTLSE-FSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYM 141 (485)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (485)
-+...+.+.|.+.+|+|+|++| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHh---hHHHHHHHHHHh
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVL---GILPCTILITGL 215 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~---~~~~~~~~~~~~ 215 (485)
.|++.|++.|... +...++..|+|+++|+++.++...+..+|.+++++++..+ |||+.+.+ ......++++..
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999888766 89976544 444455567777
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHH-HHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhh
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNE-IKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQL 294 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (485)
+++|..++.+.-+++.+.......+.....++...+..+ .+......-..-...++...++ +.++-..+.+....
T Consensus 200 ~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n----~~vl~WSlWwa~a~ 275 (511)
T TIGR00806 200 LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN----PQLLLWSLWWVFNS 275 (511)
T ss_pred HhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC----cchhhhhHHHHHHh
Confidence 888866554332221110000000000000000000000 0000000000000111222222 22333344445555
Q ss_pred cchhhHHHhHHHHHhHcCCCchh---hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011470 295 SGINGVVFYSSTIFESAGITSSD---VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFV 371 (485)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (485)
+++..+..|...+.++..-+... ..-.+..+.+.+..+..|++-.+..+...+.++.....-+.+++... ..
T Consensus 276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-~t---- 350 (511)
T TIGR00806 276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-QS---- 350 (511)
T ss_pred hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-cc----
Confidence 56777778877777766332221 34445556677788888887544433223333322222222222211 11
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 011470 372 SDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMT 438 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 438 (485)
...+...+..+++...+..... +...-+++....+.-|...|+.++..-+-..+-..+
T Consensus 351 --------~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 351 --------HDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 1224445556666666655433 333455555566777999999888766655554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=229.37 Aligned_cols=379 Identities=17% Similarity=0.174 Sum_probs=248.7
Q ss_pred HHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 011470 51 LIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI 130 (485)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~ 130 (485)
+..++..+...+..+..+.+++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33444556666777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh---------------------------------------------------hHHHHHHHHHHHhhhhhhhhhhHHH
Q 011470 131 SFAR---------------------------------------------------ESSFLYMGRLLEGFGVGIISYTVPV 159 (485)
Q Consensus 131 ~~~~---------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~ 159 (485)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8764 2456789999999999999999999
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----c---------------------chhHHHhhHHHHHHHHH
Q 011470 160 YIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----P---------------------WRILAVLGILPCTILIT 213 (485)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~---------------------wr~~f~~~~~~~~~~~~ 213 (485)
++.|++|+++|+++++++..+..+|.++|+++++.+ + |+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887543 1 56667776665555444
Q ss_pred HhhccCCc-hhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHH
Q 011470 214 GLFFIPES-PRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQ 292 (485)
Q Consensus 214 ~~~~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (485)
.++++|++ |+.. .+.+.++.++. .... ..+. . ........++.....+.+++++. ++...+..+.
T Consensus 276 ~l~~~p~~lp~~~-~~~~~~~~~~~--~~~~-~~~~--~----~~~~~~~~~~~~~~~~~Ll~n~~----f~~~~l~~~~ 341 (633)
T TIGR00805 276 PFFFFPKALPKEG-KRVNVDVHETE--KLEK-SEDK--S----RKKNSDITKDFPKIIKRLLCNPI----YMLVILAQVI 341 (633)
T ss_pred HHHhCccccCCcc-cccchhhhhhh--cccc-cccc--c----chhhhhhHHHHHHHHHHHHcCcH----HHHHHHHHHH
Confidence 45566654 3210 00000000000 0000 0000 0 00000000011123445555553 4444444444
Q ss_pred hhcchhhHHHhHHHHHhH-cCCCchhhH--HHHHHH-HHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHH
Q 011470 293 QLSGINGVVFYSSTIFES-AGITSSDVA--TLGLGA-LQVIATGVTTWLADKAG--RRALLIISSVGMTVSILIVAVSFF 366 (485)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~--~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 366 (485)
.......+..|.|.++++ .|+++.... .....+ +.+++.+++|+++||++ .|+.+..+.+...++.+.......
T Consensus 342 ~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (633)
T TIGR00805 342 DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFL 421 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 445566777888888875 688766632 223333 56789999999999987 445666666555555433221100
Q ss_pred h--------------h--------cc-----cCCCC--------------------------------------------
Q 011470 367 V--------------K--------GF-----VSDDS-------------------------------------------- 375 (485)
Q Consensus 367 ~--------------~--------~~-----~~~~~-------------------------------------------- 375 (485)
. . .. -..+.
T Consensus 422 ~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~ 501 (633)
T TIGR00805 422 IGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPG 501 (633)
T ss_pred ecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCC
Confidence 0 0 00 00000
Q ss_pred -------cch-hh-H-HHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 011470 376 -------SCY-SI-L-DIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANW-LTVWLITMTANLLLN 444 (485)
Q Consensus 376 -------~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g~~~~ 444 (485)
... .- . ....++..++..+.......|.. ..+-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|
T Consensus 502 ~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD 580 (633)
T TIGR00805 502 NSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLID 580 (633)
T ss_pred CCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhh
Confidence 000 00 1 12223333333344444555665 677778899999999999976655 577789999999998
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-24 Score=186.65 Aligned_cols=345 Identities=16% Similarity=0.154 Sum_probs=252.6
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIG 126 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~ 126 (485)
++.+..+.+..+.---..+..+|+++++++|+|+|.+..|+++++..++..+.+++..+++.|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444444556688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh----ccc-cchhHH
Q 011470 127 WLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG----LFV-PWRILA 201 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~----~~l-~wr~~f 201 (485)
.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||+ +-+..+++|.+..++|..+++.+. ... +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999888 788889999999999999999999999999984 459999999999999888776544 333 799888
Q ss_pred HhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchh
Q 011470 202 VLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFP 281 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (485)
.+-+.+.++.++.|+.-...++. ...+.+..+...+++++.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~~------------------------------------~~~~~~~~~~~~vw~~~~--- 209 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQA------------------------------------ASIATKLVSVRKVWRSPL--- 209 (395)
T ss_pred HHHHHHHHHHHHHHhhhcccccc------------------------------------cccccccccccccccCch---
Confidence 87777777766666533211100 001111112223444544
Q ss_pred HHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHH
Q 011470 282 LTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAG-RRALLIISSVGMTVSI 358 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~ 358 (485)
.|...+++..+...++....|+|.++.+.|+|+.+ .......+..++.++....+.+|.+ +|+.......++.++.
T Consensus 210 -aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 -AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred -hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45555566666667888999999999999998877 4555668889999999999999764 5566666666666776
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhcccc-CCccchhhHHHHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEI-LPINIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
+.+.+.+... .+...++++.+.+..+ |.....+.+. -.++..+.-.|+.+..+++-...||.
T Consensus 289 ~G~~~~P~~~----------------~~lw~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 289 VGLLLAPGQL----------------PILWALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHhhhhH----------------HHHHHHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 6665432111 1111233344433332 3333444433 34566677888899999999999999
Q ss_pred HHHHHHHhhcchh
Q 011470 438 TANLLLNWSGGGT 450 (485)
Q Consensus 438 i~g~~~~~~~~~~ 450 (485)
++|++.|..+++.
T Consensus 352 l~G~lhDa~gsw~ 364 (395)
T COG2807 352 LFGFLHDATGSWS 364 (395)
T ss_pred hHhHHHHhcCChH
Confidence 9999999555444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=205.42 Aligned_cols=336 Identities=14% Similarity=0.085 Sum_probs=230.9
Q ss_pred hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhH
Q 011470 78 LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTV 157 (485)
Q Consensus 78 ~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 157 (485)
++-+++++|++.+.+.+...+.+++.|.+.||+|+|-.+++|++++...++++++.++|+.+++.|.+||+|.++..++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-chhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhcc-CCchhHHHhcCCH
Q 011470 158 PVYIAEIAPQNL-RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFI-PESPRWLAKMGMT 231 (485)
Q Consensus 158 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~ 231 (485)
.++++|.+|+++ |++++|+...+.++|..+||.+|+.+ |.+.+|++.++..++...+.+++ +.+..
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-------- 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-------- 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc--------
Confidence 999999999665 79999999999999999999999888 89999999877777755444444 33210
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHH-HHhH
Q 011470 232 EDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSST-IFES 310 (485)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (485)
+.+...+..+++++++.++ ++...............+.-..+. ..++
T Consensus 253 ----------------------------~~~~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslwm~e~ 300 (464)
T KOG3764|consen 253 ----------------------------DPDSTEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLWMLET 300 (464)
T ss_pred ----------------------------CccccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHHHHHh
Confidence 0112233345566666654 222222222221122222222223 2334
Q ss_pred cCCCch-h--hHHHHHHHHHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHH
Q 011470 311 AGITSS-D--VATLGLGALQVIATGVTTWLADKAGRRALL--IISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFS 385 (485)
Q Consensus 311 ~g~~~~-~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (485)
.. ++. + ..+....+...+++.+.|.+.||++..+.+ ..+.+...+......+..... ..+..
T Consensus 301 m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~------------~L~vp 367 (464)
T KOG3764|consen 301 MF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA------------QLWVP 367 (464)
T ss_pred cc-CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH------------HHhhh
Confidence 44 333 2 566667888999999999999999843333 333333332222222221111 11222
Q ss_pred HHHHHHHHHHHhcCcccchhhhccccCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHH
Q 011470 386 VIGVVAMVVTFSLGMGPIPWVIMSEILPIN---IKGLAGSVATLANWLTVWLITMTANLLLN-WSGGGTFAIYTVVSAFT 461 (485)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~ 461 (485)
...+.+.+........|.. .+..|.-..+ ..|...++......+|.++||.+.|.+.+ .+..+...+++....+.
T Consensus 368 ~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 368 NFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIY 446 (464)
T ss_pred hHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHH
Confidence 2222223333333334544 4555544444 67899999999999999999999999988 67666666666666555
Q ss_pred HHHHHH
Q 011470 462 VAFVSI 467 (485)
Q Consensus 462 ~~~~~~ 467 (485)
.-++.+
T Consensus 447 apvl~l 452 (464)
T KOG3764|consen 447 APVLLL 452 (464)
T ss_pred HHHHHH
Confidence 544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=209.41 Aligned_cols=347 Identities=13% Similarity=0.121 Sum_probs=243.5
Q ss_pred cccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----hhHH
Q 011470 63 TCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA-----RESS 137 (485)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~ 137 (485)
...+....++.+..+..-|+...+++.++..+...+.++++|.++||++|||+++.+.++.++..+..++. .+.+
T Consensus 25 G~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~ 104 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW 104 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence 34444556677777777789999999999999999999999999999999999999998887665555443 4788
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHH
Q 011470 138 FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILIT 213 (485)
Q Consensus 138 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~ 213 (485)
.+++.-++.|++.+...|+-++++.|..|+++...+.++.+...++..++||.+++.+ |-.+.|.+.++..++.+.
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876 667788887766665544
Q ss_pred HhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHh
Q 011470 214 GLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQ 293 (485)
Q Consensus 214 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (485)
.....+..++ +++..+| ...++-+..++.+.+++..+..+....+..+
T Consensus 185 ~l~~~~~~~~---~~~~~~e---------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l-- 232 (524)
T PF05977_consen 185 ALLRWKPPPP---PSSLPRE---------------------------RFFSALREGLRYVRSSPPLRSVLLRSFLFNL-- 232 (524)
T ss_pred HHHHcccccc---ccccchh---------------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHH--
Confidence 4444433211 0000000 0001112233444444433332222222221
Q ss_pred hcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011470 294 LSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGF 370 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (485)
....+...+|.+.++ .|.++.. +.....+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++..
T Consensus 233 --~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~----- 305 (524)
T PF05977_consen 233 --FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP----- 305 (524)
T ss_pred --hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----
Confidence 122333456666654 4665555 556677899999999999999999988888888777777666665431
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011470 371 VSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGT 450 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~ 450 (485)
..+...+.+++.+.+......+. .+...+..|++.||+++++..+....+..+|..+.|.+.+..+...
T Consensus 306 ----------~~~~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~ 374 (524)
T PF05977_consen 306 ----------SFWLALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRT 374 (524)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 12333444444454444433333 4788889999999999999999999999999999999999544333
Q ss_pred HHHHHHHHH
Q 011470 451 FAIYTVVSA 459 (485)
Q Consensus 451 ~~~~~~~~~ 459 (485)
.+..++++.
T Consensus 375 al~~a~~~l 383 (524)
T PF05977_consen 375 ALLIAGAAL 383 (524)
T ss_pred HHHHHHHHH
Confidence 333343333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-26 Score=197.83 Aligned_cols=331 Identities=13% Similarity=0.143 Sum_probs=203.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 011470 81 TLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVY 160 (485)
Q Consensus 81 s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 160 (485)
+..-.|++.+.|.++..+.++.+|.++||+|||+++++|+...++..++.++++|+..+.+.|++.|+..|.. ....++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 4445799999999999999999999999999999999999999999999999999977777799999998855 788999
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccccc------hhHHHh-h---HHHHHH-HHHHhhccCCchhHHHhcC
Q 011470 161 IAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPW------RILAVL-G---ILPCTI-LITGLFFIPESPRWLAKMG 229 (485)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~w------r~~f~~-~---~~~~~~-~~~~~~~~~e~p~~~~~~~ 229 (485)
++|.+++|+|+++++..+..+++|.++||.+|+++.- +.+|.. + .+.... .....+++||+-+. ++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~---rk 221 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL---RK 221 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---hh
Confidence 9999999999999999999999999999999998732 122222 2 222222 34456778998321 11
Q ss_pred CHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccch--hHHHHHHHHHHHhhcchhhHHHhHHHH
Q 011470 230 MTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYF--PLTVGIGLLILQQLSGINGVVFYSSTI 307 (485)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (485)
+.++.... .+..++..+ ..+.+.......+.+.+... ...-.+.+..+.....+....++.+.+
T Consensus 222 ~~~~~~~~-----------~~~~~~~~~---~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l 287 (451)
T KOG2615|consen 222 RNDEHSTL-----------QEAADDRLA---LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFL 287 (451)
T ss_pred hcccccch-----------hhhhhhhhh---hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 11110000 000000000 00000001111111111111 111122233333222233444444444
Q ss_pred H-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHH
Q 011470 308 F-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAG--RRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILD 382 (485)
Q Consensus 308 ~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (485)
. +.+|+++.+ ......++.+.+......+..+|.+ .+..+..+...+.-..+++... ..+
T Consensus 288 ~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---------------~~~ 352 (451)
T KOG2615|consen 288 THGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---------------RTP 352 (451)
T ss_pred hcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---------------ccc
Confidence 2 456777766 3333344555555555555555554 3333333333332222222211 111
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 383 IFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
........+..+.... ..+.....+....|+++||+++|+......++.++||.+.|.+..+
T Consensus 353 ~~l~~~s~l~sf~~A~-~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTAS-VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred hhhhHHHHHHHHHHHH-hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 2223333333333333 3344458888999999999999999999999999999999988774
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=203.94 Aligned_cols=382 Identities=16% Similarity=0.123 Sum_probs=231.1
Q ss_pred hHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 011470 44 ISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPN 123 (485)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~ 123 (485)
++....+..+++.....++.....+.+++.+.+|+|- .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3444444445555555556666667888999999984 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchh
Q 011470 124 IIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRI 199 (485)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~ 199 (485)
.+|+++++.++|...++++..+.|+|.|... .....++|..|.|.|....++......+....++.++..+ +|||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 9999999999999999999999999987775 4566689999999998887777665555555566666544 7999
Q ss_pred HHHhhHHHHHHHH-HHhhc-cCCchhHHHhcC-CHHHHHHHHHHHh-----------------CCCcchHH----HHHH-
Q 011470 200 LAVLGILPCTILI-TGLFF-IPESPRWLAKMG-MTEDFEASLQVLR-----------------GFDTDISI----EVNE- 254 (485)
Q Consensus 200 ~f~~~~~~~~~~~-~~~~~-~~e~p~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~----~~~~- 254 (485)
.|++.++...+.+ ...++ .|++.+.+..++ ...+..+.++.+. +.+..... ....
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l 277 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL 277 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence 9999777655533 22323 333221111111 1122222222210 00000000 0000
Q ss_pred --------HHHHHhhc-cccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHH-HhHHHHHhHcCCCch-----hhH
Q 011470 255 --------IKRSVASS-SRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVV-FYSSTIFESAGITSS-----DVA 319 (485)
Q Consensus 255 --------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~-----~~~ 319 (485)
.---.+.. ..+++.-..++++++ +.+....+..+.....++... +|......-++.+.. ...
T Consensus 278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~ 354 (599)
T PF06609_consen 278 VIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWI 354 (599)
T ss_pred HHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehh
Confidence 00011111 111222233444432 112222222222222233333 444433333444332 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhc
Q 011470 320 TLGLGALQVIATGVTTWLADKAGRRALL-IISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSL 398 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (485)
....+.+..+|..+.+.+..|++|-|.. +++...+.+++.++... .... . . ..+...++.+.+.+.
T Consensus 355 s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~~n------~---~---~~i~~~~l~g~giG~ 421 (599)
T PF06609_consen 355 SSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RPDN------K---N---AAIAFLVLAGFGIGG 421 (599)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cCCC------c---c---hHHHHHHHHHHhHHH
Confidence 5566777888888999999988765544 45555554443333322 1110 0 0 112222333333333
Q ss_pred CcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 399 GMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
...+.. ..+.-..|++.-|++.|+...++.+|+.++..+...+..
T Consensus 422 ~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 422 ILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333 566667799999999999999999999999998876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=211.31 Aligned_cols=326 Identities=16% Similarity=0.107 Sum_probs=214.8
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHHhhh------HHH
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY----IGRK-GSLMIAAIPNIIGWLAISFARE------SSF 138 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~l~~~~~~~~~~~~~------~~~ 138 (485)
..+.+.+++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++.+.++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4566788899999999999999999999999999999997 6874 5677888888888888877654 457
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHHhh-----------ccccchhHHHhhHH
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIA-PQNLRGALGSVNQLSVTIGIMLAYLLG-----------LFVPWRILAVLGIL 206 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~-----------~~l~wr~~f~~~~~ 206 (485)
+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+. ...+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 778889999999888888888989987 468899999998888888766543332 12379999888665
Q ss_pred HHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
..++ .++.++..||+++.. . .+ ++++.+....++.+++++..+.....
T Consensus 182 l~~~~~~~~~~~~~e~~~~~---~-~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSEI---P-KN---------------------------IEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHcCCEecCCCC---C-cc---------------------------cccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 5554 455556677754110 0 00 00001112234445555433332222
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
..+.. ........+.+++.+....++.. .......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+..
T Consensus 231 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 231 YLFYN----LAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHH----HHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22223333334443322112222 3334457888899999999999999999988887777766655543
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC-------ccchhhHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP-------INIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
.. . ..+...+...+.+.+.+.. .+..+++.+|..+ ++.+|.+.|+.+....+|..+++
T Consensus 307 ~~--~------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~ 371 (437)
T TIGR00792 307 AG--S------------NLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG 371 (437)
T ss_pred cc--h------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 21 0 0112222333333333332 3444577777654 56689999999999999999999
Q ss_pred HHHHHHHHh
Q 011470 437 MTANLLLNW 445 (485)
Q Consensus 437 ~i~g~~~~~ 445 (485)
.+.|.+.+.
T Consensus 372 ~i~g~ll~~ 380 (437)
T TIGR00792 372 FLVGLILGI 380 (437)
T ss_pred HHHHHHHHH
Confidence 999999884
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=203.39 Aligned_cols=400 Identities=12% Similarity=0.039 Sum_probs=236.9
Q ss_pred ccccccccchhHHHH-Hhh--hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhhh
Q 011470 60 FGFTCGYSSPTQTAI-TRD--LELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIAAIPNIIGWLAISFARE 135 (485)
Q Consensus 60 ~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~ 135 (485)
..+......+.+|.+ .++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++++
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~ 101 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY 101 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444455667765 445 89999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCc---chhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNL---RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPC 208 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~ 208 (485)
++.+++.|++.|+|.|...+...++++|++|+++ |+++.++++.+.++|.++||.+++.+ +||+.|++.++..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM 181 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 88899999999999999999988776 8999999866554
Q ss_pred HHHHHHhhccC----CchhHHHhcCCHH-HH-HHHHH-----------HHhCCCcchHHHHHHH-----HHHHhhccccc
Q 011470 209 TILITGLFFIP----ESPRWLAKMGMTE-DF-EASLQ-----------VLRGFDTDISIEVNEI-----KRSVASSSRRT 266 (485)
Q Consensus 209 ~~~~~~~~~~~----e~p~~~~~~~~~~-~~-~~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 266 (485)
++.++.+++.+ +.|+...+.++++ +. ..... .....+.......... .........++
T Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (475)
T TIGR00924 182 VIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP 261 (475)
T ss_pred HHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444333332 2221000000000 00 00000 0000000000000000 00000000000
Q ss_pred hhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCC--c----hhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 267 TIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGIT--S----SDVATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~----~~~~~~~~~~~~~~~~~~~g~l~d 339 (485)
......+++. ...+.+.+.....+..+.......+.+.++ .+.+ . ........++..++..++..++..
T Consensus 262 --~~~~~~~~~~--~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~ 337 (475)
T TIGR00924 262 --RLDAVARNKM--YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT 337 (475)
T ss_pred --cCCHHHHhHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0000111111 112222333223233333444434444433 2221 1 123344445555555555444433
Q ss_pred Hhcc-----hhHH--HHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccC
Q 011470 340 KAGR-----RALL--IISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEIL 412 (485)
Q Consensus 340 ~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
|.+| +... .++.++.++++..+.+....... +.+ ...++.+...++...+.. ...|...+++.+..
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-~~~-----~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~a 410 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA-GGL-----TSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIA 410 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCc-----cCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhC
Confidence 4433 2333 56777777776666543221110 000 122334444444554444 44566669999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 413 PINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
|++.||+.+|+......+|..+++.+.....+. +....+...++++++..++.++..|
T Consensus 411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877663 3333444555555555444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=199.19 Aligned_cols=382 Identities=12% Similarity=0.098 Sum_probs=244.9
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh------hhHHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA------RESSFLY 140 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~------~~~~~~~ 140 (485)
++...|.+++++|+|..+.+++.++. ..+..++++.|++.||+|||++++++.+++++++++++++ ++++.++
T Consensus 46 fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 46 FNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 34667889999999999999998874 4556788899999999999999999999999999999998 6899999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH-HHHhhccc--cchhHHHhhHH-HHHHHHHHhh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIML-AYLLGLFV--PWRILAVLGIL-PCTILITGLF 216 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l--~wr~~f~~~~~-~~~~~~~~~~ 216 (485)
+.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++...++ +|+..|++.++ ..++.++.+.
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 78899999999999999976 55555554 78877777444 4444555555
Q ss_pred ccCCc--hhHHHhcCCHHHHHHHHHHHhCC--------------------------------------CcchHHH-----
Q 011470 217 FIPES--PRWLAKMGMTEDFEASLQVLRGF--------------------------------------DTDISIE----- 251 (485)
Q Consensus 217 ~~~e~--p~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~----- 251 (485)
++++. |++..++++.++.++..++..+. +......
T Consensus 204 ~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~ 283 (591)
T PTZ00207 204 FMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTV 283 (591)
T ss_pred heeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55443 44432332222222221111000 0000000
Q ss_pred -----------------------------HHHH-HHH---Hhhc--------c---ccchhhhHHhhhcccchhHHHHHH
Q 011470 252 -----------------------------VNEI-KRS---VASS--------S---RRTTIRFSELKQRRYYFPLTVGIG 287 (485)
Q Consensus 252 -----------------------------~~~~-~~~---~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~ 287 (485)
..+. +.. .+.+ + ++.+.++.+.+++ .-+|.++
T Consensus 284 ~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~----~d~Wll~ 359 (591)
T PTZ00207 284 IVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKT----ARLWCLL 359 (591)
T ss_pred HHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhc----hhHHHHH
Confidence 0000 000 0000 0 0000122222222 3366666
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHc-CCC-ch--h-hHHHHHHHHHHHHHHHHHHHHHHhcchh--------H-HHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIFESA-GIT-SS--D-VATLGLGALQVIATGVTTWLADKAGRRA--------L-LIISSVG 353 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~-~~--~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~--------~-~~~~~~~ 353 (485)
...++.......+.....++.+.. |.+ +. . ....+.++.+.+|++..|.+.....+|+ . +.+..+
T Consensus 360 ~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~- 438 (591)
T PTZ00207 360 WSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV- 438 (591)
T ss_pred HHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-
Confidence 666666666666677778888888 762 23 2 2456779999999999998873333322 1 222222
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 354 MTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
+.++.+++..... .-...+..++.+++++..+.... ..++|+|. ++-|+-.-+.....-+|..
T Consensus 439 ~~~~~lll~~~~p---------------~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~ 501 (591)
T PTZ00207 439 CIITMLTLFLTLP---------------KAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAI 501 (591)
T ss_pred HHHHHHHHHHHCC---------------ccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHH
Confidence 4444444433211 01234455555566655544444 89999999 8888888888887778887
Q ss_pred HH-HHHHHHHHHhh----c----------chhHHHHHHHHHHHHHHHHHhcccC
Q 011470 434 LI-TMTANLLLNWS----G----------GGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 434 ~~-~~i~g~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
+- -.++|.++|.. + ..++.+.+++++++.+....+..++
T Consensus 502 ~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 502 FLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 65 66788888721 1 2357777777777777665554333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=193.34 Aligned_cols=358 Identities=13% Similarity=-0.002 Sum_probs=222.2
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHH--HHHHHHHHHHHHHhHHH-HHhhhchhHHHHHHHHH-HHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLF--ASLSNVGAMVGAITSGQ-ISEYIGRKGSLMIAAIP-NII 125 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~i~~~~~G~-l~dr~Grr~~~~~~~~l-~~~ 125 (485)
...+...++..++..+...|.+|.+.+|.|.+.+++|++ .++..+...+.+++++. ..||+||||..++++.+ .+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 344555667778888899999999999999999999997 46778888888888844 79999999887555533 222
Q ss_pred HHHHHH---Hhhh-HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc----cccc
Q 011470 126 GWLAIS---FARE-SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL----FVPW 197 (485)
Q Consensus 126 ~~~~~~---~~~~-~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l~w 197 (485)
+....+ ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++++...+ ..+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222222 1222 3344555566777778888888888899999888899888888888999999886544 4499
Q ss_pred hhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcc
Q 011470 198 RILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRR 277 (485)
Q Consensus 198 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
|..|++.++..++..+..++++|+++. +++. ++++..+.+++++++
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~l~~~ 208 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAVA---SPEA-------------------------------PLARRASLFRFFRRP 208 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc-------------------------------chhhHHHHHHHHcCc
Confidence 999999776665544444444443210 0000 000111234455555
Q ss_pred cchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHH--HHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 011470 278 YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATL--GLG-ALQVIATGVTTWLADKAGRRALLIISSVGM 354 (485)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 354 (485)
..+.......+.. ........+.+.+.++.|+++.+.... ..+ ...+++.++.|++.||+++|+.+..+....
T Consensus 209 ~~~~~~~~~~l~~----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 209 LAWSLLALALLSA----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred CHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4333232222222 223334446667777889987763332 233 456678899999999999999888766555
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCc-cchhhHHHHHHHHHHHHHH
Q 011470 355 TVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPI-NIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~ 433 (485)
++..+........... ...........+.....+...... .....+..++ +.+++.+++.+...++|..
T Consensus 285 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 285 GSLALLWFAQAAFWLA---------PGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred HHHHHHHHHHHHcccC---------CcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 3332222211110000 000111111111122222222222 3454455555 8899999999999999999
Q ss_pred HHHHHHHHHHHhhcc-hhHHHHH
Q 011470 434 LITMTANLLLNWSGG-GTFAIYT 455 (485)
Q Consensus 434 ~~~~i~g~~~~~~~~-~~~~~~~ 455 (485)
++|.+.|.+.|..++ ..+...+
T Consensus 355 ~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 355 IASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred HHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999995444 3344333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=192.80 Aligned_cols=389 Identities=14% Similarity=0.139 Sum_probs=247.3
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh----hhchhHHHHHH-HHHHHHHHHHHHHhhh
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE----YIGRKGSLMIA-AIPNIIGWLAISFARE 135 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~~-~~l~~~~~~~~~~~~~ 135 (485)
.+......+.++.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 455666667788888999999999999999999999999999999999 59999998874 6666677778778766
Q ss_pred HH-----------------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHhhccc-
Q 011470 136 SS-----------------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLR--GALGSVNQLSVTIGIMLAYLLGLFV- 195 (485)
Q Consensus 136 ~~-----------------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l- 195 (485)
.+ .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 223333444557888888899999999998865 5899999999999999999887653
Q ss_pred ------------------cchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHH
Q 011470 196 ------------------PWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIK 256 (485)
Q Consensus 196 ------------------~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (485)
+.|..|+++++..++ .++..+..+|.|....+..+.++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~---------------------- 234 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA---------------------- 234 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc----------------------
Confidence 346788887665555 566677788875211000000000
Q ss_pred HHHhhccccchhhhHHhhhc-ccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc--CCCch------------hhHHH
Q 011470 257 RSVASSSRRTTIRFSELKQR-RYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA--GITSS------------DVATL 321 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~------------~~~~~ 321 (485)
.+.++.+....++++++. +...+.+..+++..++.+.++..+..|.+.+..+. +-++. .....
T Consensus 235 --~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~ 312 (477)
T TIGR01301 235 --APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLM 312 (477)
T ss_pred --ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHH
Confidence 000000111123333332 22223344444444445555555555655555432 21111 02334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHhhccc-C--CCCc---chhhHHHHHHHHHHHHHH
Q 011470 322 GLGALQVIATGVTTWLADKAGR-RALLIISSVGMTVSILIVAVSFFVKGFV-S--DDSS---CYSILDIFSVIGVVAMVV 394 (485)
Q Consensus 322 ~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~ 394 (485)
..++...+.+++..++.+|+|+ |.....+.++.++++....+........ . .... ......+..++.....+.
T Consensus 313 ~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi 392 (477)
T TIGR01301 313 LNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI 392 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH
Confidence 4455666777788889999985 5666777777777777766543211100 0 0000 000001333444444555
Q ss_pred HHhcCcccchhhhccccCCc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hh--cchhHHHHHHHHHHHHHHHHHhc
Q 011470 395 TFSLGMGPIPWVIMSEILPI--NIKGLAGSVATLANWLTVWLITMTANLLLN-WS--GGGTFAIYTVVSAFTVAFVSIWV 469 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
.++. ...++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+ .+ ....+.+-++..++.++...+.+
T Consensus 393 ~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 393 PLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 5443 356778899988884 456999999999999999999998888666 22 23345555555666667777778
Q ss_pred ccCCC
Q 011470 470 PETKG 474 (485)
Q Consensus 470 ~~~~~ 474 (485)
|+++.
T Consensus 472 ~~~~~ 476 (477)
T TIGR01301 472 PRPRV 476 (477)
T ss_pred CCCCC
Confidence 87654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=194.01 Aligned_cols=356 Identities=11% Similarity=0.093 Sum_probs=203.9
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHh
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIAAIPNIIGWLAISFAR-ESSFLYMGRLLEG 147 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G 147 (485)
....+.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+++.|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445678999999999999988887777777899999999 5999999999999999999999874 5667788999999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHH----hhc
Q 011470 148 FGVGIISYTVPVYIAEIAPQNL--RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITG----LFF 217 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~----~~~ 217 (485)
+|.|...+...+++.|++|+++ |..+.++++.+.++|.+++|.+++++ |||+.|++.++..++.++. ...
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999998654 45678888999999999999888776 8999999876544443222 223
Q ss_pred cCCchhHHHhcCCHHHHHHHH-----------HHHhCCCcchHHHHHHH------HHHHhhccccchhhhHHhhhcccch
Q 011470 218 IPESPRWLAKMGMTEDFEASL-----------QVLRGFDTDISIEVNEI------KRSVASSSRRTTIRFSELKQRRYYF 280 (485)
Q Consensus 218 ~~e~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
++|.++. .++++.+...... ......+.+........ ........+ .++..+++...
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 277 (500)
T PRK09584 204 VKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFA-----MKGAARRKMIV 277 (500)
T ss_pred hccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh-----cCHHHHHHHHH
Confidence 3332110 0000011100000 00000000000000000 000000000 00001111110
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhH-c-----CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHH
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFES-A-----GIT-SSDVATLGLGALQVIATGVTTWLADKAG----RRALLII 349 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~ 349 (485)
.....+.....+..+.........+..+ . |.. +.........+..++..++..++-+|.+ ..+.+.+
T Consensus 278 --~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~ 355 (500)
T PRK09584 278 --AFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAI 355 (500)
T ss_pred --HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHH
Confidence 1111111111111122222222221111 1 221 1223333445555555555544545544 4466777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHH
Q 011470 350 SSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANW 429 (485)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 429 (485)
+.++.+++++.+..........+ ....++.+....+.+.+. ....|....++.+..|++.||.++|+......
T Consensus 356 G~~l~~l~f~~l~~~~~~~~~~~------~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a 428 (500)
T PRK09584 356 GMVLCSGAFLVLPLGAKFANDAG------IVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA 428 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC------ccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 88888888877766543211100 011223333333444443 34456667899999999999999998877777
Q ss_pred HHHHHHHHHHH
Q 011470 430 LTVWLITMTAN 440 (485)
Q Consensus 430 ~g~~~~~~i~g 440 (485)
+|..++..+.+
T Consensus 429 ~g~~~~g~~~~ 439 (500)
T PRK09584 429 GAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHH
Confidence 77777666664
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=176.56 Aligned_cols=339 Identities=13% Similarity=0.106 Sum_probs=224.6
Q ss_pred cccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 61 GFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIG-RKGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~G-rr~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
.+..+...|.++..-++.|.|..|+|.+.+...+...++++++|.++||++ +||++.++.++.++........++++.+
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 345566678888999999999999999999999999999999999999986 6788888888888877788888999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHH-HHHhhccccc---hhHHHhhHHHHHHHHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAPQN--LRGALGSVNQLSVTIGIML-AYLLGLFVPW---RILAVLGILPCTILIT 213 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~-~~~~~~~l~w---r~~f~~~~~~~~~~~~ 213 (485)
++..++..+......|...++..+...++ +-|+.-.+-+.++.++... +..+.+..++ .+.+++.+...++...
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~ 174 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG 174 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 99888888888888899999888887532 2233333333333333222 2233333333 2445555554444444
Q ss_pred HhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHh
Q 011470 214 GLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQ 293 (485)
Q Consensus 214 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (485)
..+.+|+.|.....+ ++.++....+..++++++.... +.+..+..
T Consensus 175 ~~l~lp~~~~~~~~~-------------------------------~~~~~~~~~~~~~llk~~~~~~----Fll~~~l~ 219 (400)
T PF03825_consen 175 FALFLPKTPPKRSAK-------------------------------ESVKKLLGLDALKLLKNPRFLV----FLLAAFLI 219 (400)
T ss_pred HHHhCCCCccccccC-------------------------------CCcccccchHHHHHhcCccHHH----HHHHHHHH
Confidence 556678776210000 0001111112234555554332 22222223
Q ss_pred hcchhhHHHhHHHHHhHcC-CCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011470 294 LSGINGVVFYSSTIFESAG-ITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGF 370 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (485)
.........+.+.+.++.| .+... .......+..++.-...+++.+|+|.++++.++.+..++=..++.......
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~-- 297 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW-- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc--
Confidence 3335556777888888887 44333 333445677888889999999999999999999888888777766531000
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 011470 371 VSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLA-NWLTVWLITMTANLLLNW 445 (485)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~i~g~~~~~ 445 (485)
.......++...+.+..++....... .++.+..|++.|+++.++.+.. ..+|..+|..+.|++.|.
T Consensus 298 --------~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 298 --------PFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred --------HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00001111112335555554444444 8999999999999999998765 579999999999999993
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=172.91 Aligned_cols=358 Identities=14% Similarity=0.141 Sum_probs=226.2
Q ss_pred cchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHH
Q 011470 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIA 119 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~ 119 (485)
....++.+.++.+|+..|-.+++....+....+...|.+++.++..++.+.|.....+.++++|++.|| +|.|..-++-
T Consensus 37 S~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 37 SALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 344567778888888888899999999999999999999999999999999999999999999999995 6877766665
Q ss_pred HHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-
Q 011470 120 AIPNIIGWLAIS---FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV- 195 (485)
Q Consensus 120 ~~l~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l- 195 (485)
++...+|.++++ ..+.+|.+.++|++.|+|.-...++.+.+..-|++.|+.+.++|+.....-+|..+--.+..++
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 666667777665 4689999999999999999988899999999999999999999999888888876543322222
Q ss_pred ---c--c----hhHH----HhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 011470 196 ---P--W----RILA----VLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASS 262 (485)
Q Consensus 196 ---~--w----r~~f----~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (485)
+ . +... .+....+...++...-+- + ..+++++.+++-.+. .
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg----~-----~D~rAerilh~e~g~-----------------~ 250 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG----L-----SDDRAERILHLEEGF-----------------L 250 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh----h-----hhhHHHHHHhhhcCc-----------------c
Confidence 1 0 0000 001111111111100000 0 011112211111100 0
Q ss_pred cccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 263 SRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
.+.++..-..-++++ +|..............-+....|.++ +++|+|+.. ...........+.+++.|.++|
T Consensus 251 Ge~pkLtdv~~f~pp-----fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D 325 (459)
T KOG4686|consen 251 GEEPKLTDVNTFYPP-----FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD 325 (459)
T ss_pred cCCcccccccccCcc-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh
Confidence 011111111112222 22222222222222333344445555 456988665 3333445556788899999999
Q ss_pred HhcchhHHHHHHHHHHH-HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchh
Q 011470 340 KAGRRALLIISSVGMTV-SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (485)
|+|++...+.+..+..+ +-..+.+.. +.+ ...+.+.+..++.. ....|..++.+.|+++.|
T Consensus 326 k~G~n~~wv~~a~~~tl~~H~~l~Ft~--------------lsP---y~~m~~lGLsysll-AcslWP~va~~vpE~qLG 387 (459)
T KOG4686|consen 326 KYGFNLWWVASACILTLLGHSGLFFTF--------------LSP---YTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLG 387 (459)
T ss_pred hhcceehhHHHHHHHHHHHhhhHHhhh--------------ccH---HHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhc
Confidence 99998766654433322 222222211 111 23333333333322 122367888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 419 LAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 419 ~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
++.|......++|-.+.|.+.|.+.|..+
T Consensus 388 Taygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 388 TAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred chHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 99999999999999999999999999444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=165.55 Aligned_cols=390 Identities=13% Similarity=0.096 Sum_probs=260.8
Q ss_pred ccchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHH
Q 011470 40 RDSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIA 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 119 (485)
.+..+++|.++++.++..+.+++....++++......-++ +.+..-|..-+|.+.+....+++-|+.|++|-|...+++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3556788999999999999999999888998888888888 888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh------hHH--HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHh
Q 011470 120 AIPNIIGWLAISFAR------ESS--FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL 191 (485)
Q Consensus 120 ~~l~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 191 (485)
..+.++|..+-..+. .++ ....+..+.+.+.-........+..-|++++||..+..+-..+..+|.+++.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999988763 344 667888888888888777777888899999999999999999988999888877
Q ss_pred hccc----------cchh--HHHh-hHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 011470 192 GLFV----------PWRI--LAVL-GILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRS 258 (485)
Q Consensus 192 ~~~l----------~wr~--~f~~-~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (485)
...+ .|.. .|+. .++..+...+..+..++.|+......+.
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~--------------------------- 248 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA--------------------------- 248 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh---------------------------
Confidence 7665 3653 3443 3322222333333344433211100000
Q ss_pred HhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCC--chhhHHHHHHHHHHHHHHHHHH
Q 011470 259 VASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGIT--SSDVATLGLGALQVIATGVTTW 336 (485)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~g~ 336 (485)
...+.+-..+.+..++++. ++...+.+......++.....+...+...|++ ..........+++++++.+.|.
T Consensus 249 -~~~~~~f~~si~~~~~n~~----F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 249 -ALQDASFPKSIKSCFKNRQ----FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred -hhhcCcHHHHHHHHHcCcc----HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 0001112334555666654 33334444443334455555444344445665 3336666777889999999999
Q ss_pred HHHHhcchhH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc
Q 011470 337 LADKAGRRAL-LIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN 415 (485)
Q Consensus 337 l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (485)
+.||.++-+. ..+......++...+... ..... ....+.......+.++.+..|+..-+..|..-|.
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~~~-----------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTC-TLFLG-----------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hccCC-----------ceEehhhhHHHHHHhhcCCCCcceeeeeeecccc
Confidence 9999876544 333333333332111111 11100 0122334444555666777888888889988778
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hh---cchh-HHHHHHHHHHHHHHHHHhcccCCC
Q 011470 416 IKGLAGSVATLANWLTVWLITMTANLLLN-WS---GGGT-FAIYTVVSAFTVAFVSIWVPETKG 474 (485)
Q Consensus 416 ~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 474 (485)
.-++..|+.+..+++-+++-.++.+...+ .+ .... -+.....+.+..++..++.++.++
T Consensus 392 ~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 392 AEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 88999999999999999999999988877 33 1333 333444444444444444444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=178.24 Aligned_cols=323 Identities=12% Similarity=0.041 Sum_probs=201.1
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh----hch-hHHHHHHHHHHHHHHHHHHHhhh------HHH
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY----IGR-KGSLMIAAIPNIIGWLAISFARE------SSF 138 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~~~~~~~l~~~~~~~~~~~~~------~~~ 138 (485)
....+.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ .+.
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4566788899999999999999999999999999999998 787 45566777777777765555442 456
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHHhh----cc-------ccchhHHHhhHH
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIA-PQNLRGALGSVNQLSVTIGIMLAYLLG----LF-------VPWRILAVLGIL 206 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~----~~-------l~wr~~f~~~~~ 206 (485)
+++..++.+.+......+-.++..|+. ++++|++..++...+..+|..+++.+. .. .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 777777778777777788889999998 467899888888777777766655422 22 157777666544
Q ss_pred HHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
..++ .++.++..+|.++. + ++++.+.....+.+++++.++.....
T Consensus 192 i~~v~~~~~~~~~~e~~~~---~-------------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~ 237 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP---E-------------------------------VDNSSSVWKDLKLLLGNSQWRIMFIF 237 (444)
T ss_pred HHHHHHHHHhCCeEEecCC---C-------------------------------CcCCCCHHHHHHHHhCCchHHHHHHH
Confidence 4433 34444555554210 0 00011122334555666554443333
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh---hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD---VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
..+.... ........+++.+.. .+... .......+..+++.++.+++.||+|+|+....+.....+..+.+.
T Consensus 238 ~~~~~~~----~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 312 (444)
T PRK09669 238 NVVLLTA----VVTRGGATLYYVNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF 312 (444)
T ss_pred HHHHHHH----HHHHhhhhheeeeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111122222322222 22222 223334566778888999999999999988877655544332222
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC-------ccchhhHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP-------INIKGLAGSVATLANWLTVWLI 435 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~ 435 (485)
... .. ..+...+...+.+.+.+ ...+..+++++|..+ .+..|...|..+....+|..++
T Consensus 313 ~~~--~~-----------~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg 378 (444)
T PRK09669 313 FIP--PS-----------NVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIG 378 (444)
T ss_pred HhC--cc-----------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHH
Confidence 210 00 11222333334444444 334556688888764 3345778899999999999999
Q ss_pred HHHHHHHHHh
Q 011470 436 TMTANLLLNW 445 (485)
Q Consensus 436 ~~i~g~~~~~ 445 (485)
+.+.|.+.+.
T Consensus 379 ~~i~g~ll~~ 388 (444)
T PRK09669 379 GAVVGWILAW 388 (444)
T ss_pred HHHHHHHHHH
Confidence 9999999883
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-19 Score=168.85 Aligned_cols=361 Identities=12% Similarity=0.065 Sum_probs=204.2
Q ss_pred cchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Q 011470 67 SSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNIIGWLAISFAR-ESSFLYMGR 143 (485)
Q Consensus 67 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r 143 (485)
....+|. +.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.++.+ +...+.+..
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 3344554 5667999999999999999999999999999999999 999999999999999988776643 223344455
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhc
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQN--LRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFF 217 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~ 217 (485)
.+.++|.|...+...++++|.+|++ +|..+.++.+.+.++|..++|.+.+++ |||+.|.++++..++.++.+++
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777788889999999875 689999999999999999999998876 8999999866544444333332
Q ss_pred cCCch-hH--HHhcCCHHHHH-HHHHH---HhC------CCcchHHHH-HHHHH-----------HHhhccccchhhhHH
Q 011470 218 IPESP-RW--LAKMGMTEDFE-ASLQV---LRG------FDTDISIEV-NEIKR-----------SVASSSRRTTIRFSE 272 (485)
Q Consensus 218 ~~e~p-~~--~~~~~~~~~~~-~~~~~---~~~------~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~ 272 (485)
..+.. +. ..+++..++.. ..... ... .......+. ..... .....+ .+..+
T Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e 263 (493)
T PRK15462 188 GNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA----ENQKQ 263 (493)
T ss_pred hhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHH
Confidence 21110 00 00000100000 00000 000 000000000 00000 000000 00000
Q ss_pred hhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc------CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 011470 273 LKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA------GIT-SSDVATLGLGALQVIATGVTTWLADKAGR-- 343 (485)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-- 343 (485)
|++. ...+.+.+.....+..+.....-...+.++. |+. +.........+..++.+++..++-.|..+
T Consensus 264 --r~r~--~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~ 339 (493)
T PRK15462 264 --RKEL--GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN 339 (493)
T ss_pred --HhhH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 1110 1111122222222222222222223333221 322 22244455566666667776666566532
Q ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchh
Q 011470 344 RA-----LLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKG 418 (485)
Q Consensus 344 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (485)
|. -..++.++.+++++.+.+......... ....++ ++...++....-....|+..+.++++.|++.+|
T Consensus 340 ~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~------~~s~~w-l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 340 RTVRIWGKFALGLGLMSAGFCILTLSARWSAMYG------HSSLPL-MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------CcCHHH-HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHH
Confidence 21 145677777777777665443221100 011222 333334344445667888899999999999999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHH
Q 011470 419 LAGSVATLAN-WLTVWLITMTANLL 442 (485)
Q Consensus 419 ~~~g~~~~~~-~~g~~~~~~i~g~~ 442 (485)
..+|+..... .+|..++..+.+..
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999986633 46666665555544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=181.43 Aligned_cols=369 Identities=13% Similarity=0.010 Sum_probs=221.2
Q ss_pred HHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhc-----hhHHHHHHHHHHH-
Q 011470 51 LIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIG-----RKGSLMIAAIPNI- 124 (485)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~~~~~~l~~- 124 (485)
.++...++..|+.........+.+.+++|+++++++...+...+.+.+-.+ +|+++||++ ||+.++++.++.+
T Consensus 29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 334444555667643444556778888999999999999999999999666 999999998 7787888877763
Q ss_pred HHHHHHHHhhhHHHH-HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHH---HHHHHHHHHHHHHhhccc----c
Q 011470 125 IGWLAISFARESSFL-YMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN---QLSVTIGIMLAYLLGLFV----P 196 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~~~~~~~~l----~ 196 (485)
++....+..++.... .+.+++.+++.+...++..++..|..+ +++....+.. ....++|.++++.+++.+ +
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~ 186 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL 186 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 443334444554444 448899999999999999999999998 5544432222 333346666666666554 8
Q ss_pred chhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc
Q 011470 197 WRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276 (485)
Q Consensus 197 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
||..|++.+...++..+...+++|++.....+.+.++.... .... ....+ ..++........+++
T Consensus 187 ~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~----------~~~~-~~~~~----~~~~~~~~l~~~l~~ 251 (468)
T TIGR00788 187 TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM----------ALLT-LGVLA----NVKVQILGLRGAIQL 251 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh----------hhhh-hhHHH----HHHHHHHHHHHHHhc
Confidence 99999887666555555667778863110000000000000 0000 00000 000001112222333
Q ss_pred ccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 011470 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGM 354 (485)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 354 (485)
+..++......+.+. .. .......+. ...+..|.++.. ......+++.+++..+.+++.+|++.|+.+.++.++.
T Consensus 252 ~~i~~~l~fifl~~~-~~-~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~ 328 (468)
T TIGR00788 252 LEIAKPLIFIFLSYA-NL-PGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLY 328 (468)
T ss_pred HHHHHHHHHHHHHHh-hc-CCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 322221222222011 11 111111111 111345777666 4555667888999999999999999999988887777
Q ss_pred HHHHHHHHHHHHhhc-ccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHH
Q 011470 355 TVSILIVAVSFFVKG-FVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (485)
+++.+.......... ....++ .+.......+...+.+....+.. .++.+..|++.+|+..++.+.+.++|..
T Consensus 329 ~~~~~~~~~l~~~~~~~~gi~~------~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~ 401 (468)
T TIGR00788 329 TLSSLFDLILVKRWNLAFGISD------EVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSS 401 (468)
T ss_pred HHHHhCceeeeeccccccCCCC------eeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHH
Confidence 766644321110000 000000 01222333444555555556665 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011470 434 LITMTANLLLNWS 446 (485)
Q Consensus 434 ~~~~i~g~~~~~~ 446 (485)
+++.+.+.+.+.-
T Consensus 402 v~~~~gg~l~~~~ 414 (468)
T TIGR00788 402 VSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998843
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=176.58 Aligned_cols=339 Identities=13% Similarity=0.056 Sum_probs=204.3
Q ss_pred ccccccchh-HHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh----hhch-hHHHHHHHHHHHHHHHHHHHhh-
Q 011470 62 FTCGYSSPT-QTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE----YIGR-KGSLMIAAIPNIIGWLAISFAR- 134 (485)
Q Consensus 62 ~~~~~~~~~-~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~l~~~~~~~~~~~~- 134 (485)
+..+...+. ...+.+.+|+++.++|.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++..++-..+
T Consensus 20 ~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~ 99 (473)
T PRK10429 20 FAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHL 99 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCC
Confidence 333444443 44566778999999999999999999999999999999 6698 6667778888777766654432
Q ss_pred -----hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHHhhc----cc-------cc
Q 011470 135 -----ESSFLYMGRLLEGFGVGIISYTVPVYIAEIA-PQNLRGALGSVNQLSVTIGIMLAYLLGL----FV-------PW 197 (485)
Q Consensus 135 -----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~----~l-------~w 197 (485)
.+..+++..++.+++.....+.-.++..|.. ++++|.+..++-....++|..+.+.+.. .+ +|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~ 179 (473)
T PRK10429 100 FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGF 179 (473)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence 2445667777888888888899999999998 5889999988866666666444433221 11 46
Q ss_pred hhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhc
Q 011470 198 RILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQR 276 (485)
Q Consensus 198 r~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
+....+.++..++ .++.++..+|.++....+. .++++.+.+..++.++++
T Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~n 230 (473)
T PRK10429 180 QMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVS-----------------------------AEGSHLTLKDIVALIYKN 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceecCCcccccc-----------------------------ccccCCCHHHHHHHHhcC
Confidence 6665554444333 4444555666531100000 000011112223334444
Q ss_pred ccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 011470 277 RYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGM 354 (485)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 354 (485)
+.++..+.. .+...........+.+++.+....+... .......+..+++.++.+++.||+|+|+.+..+..+.
T Consensus 231 ~~~~~ll~~----~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~ 306 (473)
T PRK10429 231 DQLSCLLGM----ALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFP 306 (473)
T ss_pred HHHHHHHHH----HHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 433222222 2222222333333444444433222222 3333445778889999999999999999988777665
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC-------ccchhhHHHHHHHH
Q 011470 355 TVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP-------INIKGLAGSVATLA 427 (485)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~ 427 (485)
.++.+.+........ ...+..++...+.+.+.+.. .+..+++.+|..+ .+..|...|..+..
T Consensus 307 ~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~ 375 (473)
T PRK10429 307 VLSCGVLLLMGLAAP----------HNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMV 375 (473)
T ss_pred HHHHHHHHHHhccCc----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHH
Confidence 555444432211110 01122223333333333332 2444577788744 44457789999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011470 428 NWLTVWLITMTANLLLN 444 (485)
Q Consensus 428 ~~~g~~~~~~i~g~~~~ 444 (485)
..++..+++.+.|.+.+
T Consensus 376 ~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 376 VKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-18 Score=163.22 Aligned_cols=355 Identities=16% Similarity=0.205 Sum_probs=224.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 011470 84 EFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM-IAAIPNIIGWLAISFA--RESSFLYMGRLLEGFGVGIISYTVPVY 160 (485)
Q Consensus 84 ~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~l~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~ 160 (485)
..++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.+..+. ++++...+..++.-++.+...+...++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999665554 4555566677777774 455556666677777888888999999
Q ss_pred HHhcCCCCcc--------------------------hhHHHHHHHHHHHHHHHHHHhhccc------------cchhHHH
Q 011470 161 IAEIAPQNLR--------------------------GALGSVNQLSVTIGIMLAYLLGLFV------------PWRILAV 202 (485)
Q Consensus 161 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l------------~wr~~f~ 202 (485)
+.|..+++++ ++..+.-.....+|.++.-++.-.+ +-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999888 8999998888888888776554332 2477777
Q ss_pred hhHHH-HHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchh
Q 011470 203 LGILP-CTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFP 281 (485)
Q Consensus 203 ~~~~~-~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (485)
+.++. .+..+..++++||.|+....++.........+ +-...++++.+. +
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------------~l~~t~k~~~~~----~ 281 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFK-------------------------RLWRTFKEIRKL----R 281 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHH-------------------------HHHHHHHHHHhC----h
Confidence 75554 44577778888888642000000000000000 001112222222 2
Q ss_pred HHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHH
Q 011470 282 LTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRR--ALLIISSVGMTV 356 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~ 356 (485)
....+++.++...-+...+......+.+ ..|++..+ ...+...+.+++|+++.+++.||+|.| +.+..+.+...+
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 2444555555555556666666666665 67998877 445556889999999999999999988 666665544422
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHH
Q 011470 357 SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
..+.-.+..... ..+. ...+...+...+.+...+ +..+..-++.+|+.|+++.+...|++.......+++||
T Consensus 362 i~~~g~~G~~~~-~~g~------~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 362 IPLYGLFGFWPS-FFGL------KSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHHHhhhc-ccCc------ccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 222211111110 0000 011112222223333333 34455568999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 437 MTANLLLNWSGGGT-FAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 437 ~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
.+.|.+.+..+..- -.....+.++..++.+..++..|++
T Consensus 434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 434 LLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 99999999555333 2333333333344444555555444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=166.83 Aligned_cols=362 Identities=15% Similarity=0.111 Sum_probs=211.2
Q ss_pred ccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH--HHHHH-HHHHHh----
Q 011470 62 FTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP--NIIGW-LAISFA---- 133 (485)
Q Consensus 62 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l--~~~~~-~~~~~~---- 133 (485)
+..+..-|..|. +.++.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++..+.+ ...+. +...+.
T Consensus 21 f~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~ 100 (412)
T PF01306_consen 21 FIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665 4556899999999999999999999999999999999966544433322 22222 222222
Q ss_pred hhHH-HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHH
Q 011470 134 RESS-FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCT 209 (485)
Q Consensus 134 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~ 209 (485)
.|.+ ..+++-+..|+......|+.-+++.++.. +.+.-.|-.-...++|.+++..+++.+ +=+..||++....+
T Consensus 101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~ 178 (412)
T PF01306_consen 101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAI 178 (412)
T ss_dssp TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHH
Confidence 2322 23333344455555555666666655542 223334444555666666666666655 34567887665555
Q ss_pred HHHHH-hhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhh---hHHhhhcccchhHHHH
Q 011470 210 ILITG-LFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIR---FSELKQRRYYFPLTVG 285 (485)
Q Consensus 210 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 285 (485)
+..++ ...-|+.++.....+. ...++++.+ ..++++.+. +|.
T Consensus 179 il~lll~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~k~~~----fw~ 224 (412)
T PF01306_consen 179 ILLLLLLLLKPDVPPQAEVADA------------------------------LGAKKDKVSLKDVLSLFKMRN----FWF 224 (412)
T ss_dssp HHHHHHHSS---SSSSS-SSTT------------------------------SSS------HHHHHHHTTSHH----HHH
T ss_pred HHHHHHHHcCCcCchhhhhhcc------------------------------cccCCCCCcHHHHHHHhcchh----HHH
Confidence 43333 3333443321111000 001111112 233444443 333
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh------hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD------VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 359 (485)
+.+......+.+..+....+.+.....-+... .....-.+..++...+.+++.+|+|.|+.++++..++.+=..
T Consensus 225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~ 304 (412)
T PF01306_consen 225 FVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRII 304 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH
Confidence 33333333333455554455555554333222 233334567788888999999999999999999888888877
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH-HHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA-TLANWLTVWLITMT 438 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~i 438 (485)
..++.. .++.....-.+.+.-+.....+.. -|+.+.+|++..++...+. +...++|.++.+.+
T Consensus 305 ~~~~~~---------------~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~ 368 (412)
T PF01306_consen 305 GSGFAT---------------NPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL 368 (412)
T ss_dssp HHHT-----------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHhhhc---------------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 776541 223344444455555554444444 8999999999999999886 68889999999999
Q ss_pred HHHHHH-hhcchhHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 439 ANLLLN-WSGGGTFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 439 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
.|.++| .|...++++.+.+.+...++..+.+++.++.
T Consensus 369 ~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 369 AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 999999 5556678888888777777878877766554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=164.36 Aligned_cols=322 Identities=12% Similarity=0.135 Sum_probs=191.9
Q ss_pred HHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh----chhHHH-HHHHHHHHHHHHHHHHhh-------hHHH
Q 011470 71 QTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI----GRKGSL-MIAAIPNIIGWLAISFAR-------ESSF 138 (485)
Q Consensus 71 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~----Grr~~~-~~~~~l~~~~~~~~~~~~-------~~~~ 138 (485)
.+.+.+.+|++..++|.+.+...+..++..++.|+++||. ||||.. +++.+...+..++....+ ..+.
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3467777899999999999999999999999999999986 777654 556555554444432111 2334
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCC-CcchhHHHHHHHH-----HHHHHHHHHHhhcccc------chhHHHhhHH
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAPQ-NLRGALGSVNQLS-----VTIGIMLAYLLGLFVP------WRILAVLGIL 206 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~~~~~l~------wr~~f~~~~~ 206 (485)
+++..++.+++.+...+...++..+..++ ++|.+..+.-..+ ..++..++|.++...+ |.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 55566778888888888888887877654 6788776665543 3345556666654431 2111112122
Q ss_pred HH-HHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PC-TILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~-~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
.. ++.++.....||+++. + .+++.....++.+++++........
T Consensus 192 ~~~~~~~~~~~~~~e~~~~---~--------------------------------~~~~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVR---I--------------------------------VAQPSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred HHHHHHHHHHcCcEeccCC---C--------------------------------ccCCCHHHHHHHHhCCchHHHHHHH
Confidence 22 2223333445554210 0 0011112234556666554333322
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhH-cCCCchhh-H-HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFES-AGITSSDV-A-TLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
..+. ...........+++.++ .|.++... . .....+..+++.++.+++.||+++|+.+.++.++..++.+.+.
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 237 ALCV----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHH----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 2222 22233344445555544 35433332 1 2222456678899999999999999999988887777765554
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc-------chhhHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN-------IKGLAGSVATLANWLTVWLI 435 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~ 435 (485)
+... ...+.......+.+.+.+... +...+...|..|.+ .+|...|+.+....+|..++
T Consensus 313 ~~~~-------------~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig 378 (448)
T PRK09848 313 WVSV-------------WSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG 378 (448)
T ss_pred HcCc-------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence 3200 011222233333444444333 34446777776543 46999999999999999999
Q ss_pred HHHHHHHHHh
Q 011470 436 TMTANLLLNW 445 (485)
Q Consensus 436 ~~i~g~~~~~ 445 (485)
+.+.+.+.+.
T Consensus 379 ~~i~g~~l~~ 388 (448)
T PRK09848 379 GSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHH
Confidence 9999998773
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=167.62 Aligned_cols=326 Identities=16% Similarity=0.173 Sum_probs=226.2
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh----hhchhHH-HHHHHHHHHHHHHHHHHh-h-------h
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE----YIGRKGS-LMIAAIPNIIGWLAISFA-R-------E 135 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~-~~~~~~l~~~~~~~~~~~-~-------~ 135 (485)
...+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||. +++|..+.+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 3456677888999999999999999999999999999999 8997655 556778888877777765 4 2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHHHHHHHHHHHHHHHHHHhhccc-----------cchhHHHh
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAP-QNLRGALGSVNQLSVTIGIMLAYLLGLFV-----------PWRILAVL 203 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----------~wr~~f~~ 203 (485)
...+.+..++..++.........++..|..+ +++|.+..+.-.....+|.++...+...+ +|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3456778888899999999999999999998 57899999998888888886544433222 48888777
Q ss_pred hHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhH
Q 011470 204 GILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPL 282 (485)
Q Consensus 204 ~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (485)
.++..++ .++..+..+|.++. ...++++.+-+..++.+++++.++..
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~~--------------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSVE--------------------------------VTEQEKKISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred HHHHHHHHhhhhhheeeecccc--------------------------------ccccccccccccchhhhcccchHHHH
Confidence 5554444 55666667772110 00011122233445666666655544
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHc-CCCch-hhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESA-GITSS-DVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
.....+..+. ........+++.+.. +.+.. ........+..+++.++.++++||+|+|+.+..+..+.+++.+.
T Consensus 231 ~~~~~~~~~~----~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 231 LLAFFLQWLA----FALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHHHhh----hhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence 4444433333 333333444444443 33322 24455567888999999999999999999999999888888877
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC-------ccchhhHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP-------INIKGLAGSVATLANWLTVW 433 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~ 433 (485)
+.+.... ..+..++...+.+.+.+.. ....+++.+|..+ ++..|...|+.++...++..
T Consensus 307 ~~~~~~~-------------~~~~~~i~~~l~gi~~~~~-~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~ 372 (428)
T PF13347_consen 307 LFFLGPG-------------SPWLVLILFILAGIGYGAF-FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG 372 (428)
T ss_pred HHHHHhh-------------hHHHHHHHHHHhHhhhccc-ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence 7665321 1133344444455555443 3555688888775 34469999999999999999
Q ss_pred HHHHHHHHHHH
Q 011470 434 LITMTANLLLN 444 (485)
Q Consensus 434 ~~~~i~g~~~~ 444 (485)
+++.+.+.+.+
T Consensus 373 la~~i~g~~l~ 383 (428)
T PF13347_consen 373 LAGAIVGLLLA 383 (428)
T ss_pred HHHHHHHHHHH
Confidence 99999998887
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-17 Score=156.91 Aligned_cols=324 Identities=13% Similarity=0.056 Sum_probs=196.2
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHHhhh------HHH
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY----IGRK-GSLMIAAIPNIIGWLAISFARE------SSF 138 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~l~~~~~~~~~~~~~------~~~ 138 (485)
....+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++-..++ ...
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4456677889999999999999999999999999999995 6876 4555677777777766554442 455
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHHHHHHHHHHHHHHHHHHhhcc----c-------cchhHHHhhHH
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAP-QNLRGALGSVNQLSVTIGIMLAYLLGLF----V-------PWRILAVLGIL 206 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~----l-------~wr~~f~~~~~ 206 (485)
+++..++..++.......-.++..|..+ ++||++..++...+..+|..+++.+... . +|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 6777788889999999999999999987 7889999999999888887766544321 1 46665555444
Q ss_pred HHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
+.++ ..+.+...+|.++. + .++.+.+...+..++++.++.....
T Consensus 192 i~~i~~~i~~~~~kE~~~~---~--------------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~ 236 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVEA---P--------------------------------PTTTSMREDLRDIWQNDQWRIVGLL 236 (460)
T ss_pred HHHHHHHHHHhcceeccCC---C--------------------------------ccCCCHHHHHHHHhCChHHHHHHHH
Confidence 4333 33344444554210 0 0000112234445555544433322
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh-hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD-VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
..+.............++..++. +..... .......+..+++.+++++++||+++|+....+.....+..+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~ 313 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV 313 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222211222222222221 221222 34445567788899999999999999887765444333322222211
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCC-------ccchhhHHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILP-------INIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
... ......+..++.+.+. ....+..+++..|..+ .+..|...+..+....+|..+++.
T Consensus 314 ---~~~----------~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~ 379 (460)
T PRK11462 314 ---PMQ----------ASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA 379 (460)
T ss_pred ---chh----------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111122222233332 2233444566666644 333466667778999999999999
Q ss_pred HHHHHHHh
Q 011470 438 TANLLLNW 445 (485)
Q Consensus 438 i~g~~~~~ 445 (485)
+.|.+.+.
T Consensus 380 i~g~iL~~ 387 (460)
T PRK11462 380 LIGWMLAY 387 (460)
T ss_pred HHHHHHHH
Confidence 99998874
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=147.83 Aligned_cols=343 Identities=12% Similarity=0.157 Sum_probs=222.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhH-HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhhhhhhhhHH
Q 011470 83 SEFSLFASLSNVGAMVGAITSGQISEYIGRKG-SLMIAAIPNIIGWLAISFARE---SSFLYMGRLLEGFGVGIISYTVP 158 (485)
Q Consensus 83 ~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~l~~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~~~~~~~ 158 (485)
+.++...++..+..++.+|+.|.++|+.|+|| .+-....+..++..+..++++ ++..++...+..++.....+.-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 45688899999999999999999999999655 555566666677777777755 44556667889999999999999
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh------c----------------cccchhHHHhhHHHH-HHHHHHh
Q 011470 159 VYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG------L----------------FVPWRILAVLGILPC-TILITGL 215 (485)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~------~----------------~l~wr~~f~~~~~~~-~~~~~~~ 215 (485)
+++.+..++++-++..++-.....+|..+.-++. + ...=|..+.+.++-. +..+..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999998888887777666666666544332 1 013566666655543 3466666
Q ss_pred hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhc
Q 011470 216 FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLS 295 (485)
Q Consensus 216 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
+..+|.++-. ....++. . ..-++-...+++.++++. +..+++..+...-
T Consensus 218 ~~v~~~~~~~---~~~~~~l--------------------~----~g~k~L~~t~k~i~~~~~----i~~FLiA~~~~~D 266 (438)
T COG2270 218 LNVHDAEKIS---SPPPTAL--------------------R----NGFKELKSTFKEIRGRKN----LVLFLIARFFYID 266 (438)
T ss_pred hccccccccc---ccchHHH--------------------H----HHHHHHHHHHHHHhcccc----hHHHHHHHHHHHh
Confidence 6777655310 0000000 0 000111223344444443 4445555555555
Q ss_pred chhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011470 296 GINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVS 372 (485)
Q Consensus 296 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (485)
+.+.+......+.. ++|++..+ .......+..++|+++.|++.||+|.|+++..+.++..+..+.......
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~------ 340 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG------ 340 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc------
Confidence 66677777777766 77998877 4444558899999999999999999998888777666555444333211
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 011470 373 DDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFA 452 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~ 452 (485)
.....+...+++...+ +.....-++..+..|+++.++..|+++...+.+++++|+..+.+.+..+.....
T Consensus 341 ---------~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 341 ---------ELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred ---------cHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 0111122222222222 334445689999999999999999999999999999999999999955544443
Q ss_pred HHHHHH-HHHHHHHHHhcccC
Q 011470 453 IYTVVS-AFTVAFVSIWVPET 472 (485)
Q Consensus 453 ~~~~~~-~~~~~~~~~~~~~~ 472 (485)
+...+. ++..++.+...|..
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCC
Confidence 333333 33333444444544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-17 Score=148.18 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=170.5
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---------------
Q 011470 131 SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--------------- 195 (485)
Q Consensus 131 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------- 195 (485)
+..++|+.+++.-++.|.|.+...+..+.++++..+++++++.+++.+...++|..++|++++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999988632
Q ss_pred -----cchhHHHhh-HHHHHHHHHH-hhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchh
Q 011470 196 -----PWRILAVLG-ILPCTILITG-LFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI 268 (485)
Q Consensus 196 -----~wr~~f~~~-~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (485)
+||++|++. ++..++.++. ..-+||.++ ++++ + ..+++. .
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------~-~~~~~~---~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------R-VSSGDT---T 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------c-cccccc---c
Confidence 488888864 4433333222 223354311 0000 0 000000 0
Q ss_pred hhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH---cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011470 269 RFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES---AGITSSD--VATLGLGALQVIATGVTTWLADKAGR 343 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~ 343 (485)
..+..++++ ..+...+..+...........|.+.|+++ .|.++.+ ........+.++|+++.+++.||+++
T Consensus 132 ~~~~~~~~~----~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFT----HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 011122222 23333444444444566778888888864 3676655 45556678889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHH
Q 011470 344 RALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSV 423 (485)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (485)
|+.+..+..+..++.++.... .. ........+++++.+..+ |...+...+..|+ +.+++.++
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~---~~-------------~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~-~~~~asai 269 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT---HG-------------YVAMWFVLALGLFNSIMF-PTIFSLALNALGR-HTSQGSGI 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CC-------------HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh-hhhhhHHH
Confidence 998877766666555333221 10 111233334455544443 4444777777664 45666676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011470 424 ATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 424 ~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
. ....+|+.+.|.+.|.+.|.
T Consensus 270 ~-~~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 270 L-CLAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred H-HHHHhcchHHHHHHHHHHHh
Confidence 5 66779999999999999994
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=144.67 Aligned_cols=327 Identities=17% Similarity=0.132 Sum_probs=218.9
Q ss_pred HHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh----hhch-hHHHHHHHHHHHHHHHHHHHhhh------HHHH
Q 011470 71 QTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE----YIGR-KGSLMIAAIPNIIGWLAISFARE------SSFL 139 (485)
Q Consensus 71 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~l~~~~~~~~~~~~~------~~~~ 139 (485)
+-.+.+.+|+++..+|.+..+.-+--++.-|+.|.++| |+|| |+.++++.+..++.+.++-.+++ ....
T Consensus 36 l~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 36 LFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred HHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 44567788999999999999999999999999999999 5786 55677788888888888877763 4567
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCC-CCcchhHHHHHHHHHHHHHHHHHHhh----ccc-------cchhHHHhhHHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAP-QNLRGALGSVNQLSVTIGIMLAYLLG----LFV-------PWRILAVLGILP 207 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~----~~l-------~wr~~f~~~~~~ 207 (485)
++...+.+++......+-.++..|..+ ++||.+..+.-....++|..+...+. ..+ ||+..-++.++.
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 788899999999999999999999976 68899999999999888866543322 122 577666664444
Q ss_pred HHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHH
Q 011470 208 CTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGI 286 (485)
Q Consensus 208 ~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (485)
.++ .+.+++-.+|.+.. +.+. .+..+.+.+..+..+++++.+.....
T Consensus 196 ~~i~~l~~~~~v~ER~~~---~~~~---------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~-- 243 (467)
T COG2211 196 GVILLLFCFFNVKERVVE---TQPT---------------------------KTGVKLKLKDSFLLIFKNRPLLLLLL-- 243 (467)
T ss_pred HHHHHHHHHHHhhcccCc---cccC---------------------------cccccccHHHHHHHHHccchHHHHHH--
Confidence 444 45555556665420 0000 00011111222334555554333332
Q ss_pred HHHHHHhhcchhhHHHhHHHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
..++.+...+.......+|.+.. |.+... ..........+++.++..++.+|+|+|+....+.++.+++.+++.+
T Consensus 244 --~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f 321 (467)
T COG2211 244 --MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321 (467)
T ss_pred --HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence 23333333333344444444322 333332 3344445666677899999999999999999999988888888877
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccC-------CccchhhHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEIL-------PINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
.... ...+.++..++...+. ....+++|++++|.. ..+..|...|...++.-+|.+++.
T Consensus 322 ~~~~-------------~~~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 322 TPAG-------------SVVLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred hcCc-------------chHHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 6410 1122223323333333 344678888888875 334558889999999999999999
Q ss_pred HHHHHHHHh
Q 011470 437 MTANLLLNW 445 (485)
Q Consensus 437 ~i~g~~~~~ 445 (485)
.+.|+..+.
T Consensus 388 ~~~g~~L~~ 396 (467)
T COG2211 388 FIPGWILGA 396 (467)
T ss_pred HHHHHHHHH
Confidence 999998873
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-18 Score=156.17 Aligned_cols=380 Identities=17% Similarity=0.195 Sum_probs=218.3
Q ss_pred HHhhhhccccccccccchhHHHHHhh--hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHHHHHHHHHHHHH
Q 011470 52 IVALGPIQFGFTCGYSSPTQTAITRD--LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGR-KGSLMIAAIPNIIGWL 128 (485)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~l~~~~~~ 128 (485)
++.+..++.....+++.+..-+..++ .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.|.++..++++
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 33344444466666666665455555 77788889999999999999999999999999996 8889999999999999
Q ss_pred HH-HHh---h-hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------c-
Q 011470 129 AI-SFA---R-ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------P- 196 (485)
Q Consensus 129 ~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~- 196 (485)
+. ++. + ..+.++++|++.|+|.+.. ...-+++++-...++|.++++....+..+|.++||.++..+ |
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 98 443 3 6789999999999998755 77889999988889999999999998899999888877554 2
Q ss_pred ----------chhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccc
Q 011470 197 ----------WRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRR 265 (485)
Q Consensus 197 ----------wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (485)
+..+-|+.++..++ .+.+.++++|.++...+++.+++ ++
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------------------------~~ 246 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------------------------EE 246 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------------------------hh
Confidence 23455666666666 55556677776542211111000 00
Q ss_pred chhhhHHhhhcc-cchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh---hHHHHHHHHHHHHHHHH-HHHHHH
Q 011470 266 TTIRFSELKQRR-YYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD---VATLGLGALQVIATGVT-TWLADK 340 (485)
Q Consensus 266 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-g~l~d~ 340 (485)
.+....+..+.+ .+...+.++.......+.....-....+.....++.+..+ .......+.+++...+. .+..-|
T Consensus 247 ~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~ 326 (488)
T KOG2325|consen 247 EKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTR 326 (488)
T ss_pred hccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000111111 1222233333333322222222333344444455655444 22222333333333222 222223
Q ss_pred ---hcchhHHHHHHHHHHHHHHHHHHHHHhhc-c--------cCCCCcchhhHH----HHHHHHHHHHHHHHhcCcc---
Q 011470 341 ---AGRRALLIISSVGMTVSILIVAVSFFVKG-F--------VSDDSSCYSILD----IFSVIGVVAMVVTFSLGMG--- 401 (485)
Q Consensus 341 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--- 401 (485)
+.+|..+..+.........+......... . .+.....+.|-. .......+.+...++...+
T Consensus 327 l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~ 406 (488)
T KOG2325|consen 327 LGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFIS 406 (488)
T ss_pred hhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecccccccc
Confidence 23444444443333333332222111111 0 011111111100 0111111122222222222
Q ss_pred cchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011470 402 PIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTV 462 (485)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 462 (485)
....+.-+|...|..+++..|++......+..++|.+........+....+.+..+.++..
T Consensus 407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 407 TALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred chHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 1223778888899999999999999999999999999988888555444444444443333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=140.64 Aligned_cols=395 Identities=14% Similarity=0.122 Sum_probs=232.7
Q ss_pred hhHHHHHhhhC----CCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhh--hHHHHHH
Q 011470 69 PTQTAITRDLE----LTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNIIGWLAISFAR--ESSFLYM 141 (485)
Q Consensus 69 ~~~~~i~~~~~----~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~ 141 (485)
+..-.+..+++ .++++..-+.+.|..-.-+..+++|+++||+ |+|+++.+|.++..+|.++.+.+. +...+++
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i 122 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYI 122 (498)
T ss_pred HHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 33445555555 9999999999999988889999999999997 999999999999999999999984 7889999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHh
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNL--RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGL 215 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~ 215 (485)
+-++.++|.|..-+....+++|.+|+++ |-..+++++++.++|..++|++.+++ ||...|..+++.....++.+
T Consensus 123 ~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 123 GLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998653 67888999999999999999988777 89999998877766655555
Q ss_pred hccCCc---------hhHHHhcCCHHHHHHHHHHHhCC---CcchHHHHHHHHHHH---------hhccccchhhhHHhh
Q 011470 216 FFIPES---------PRWLAKMGMTEDFEASLQVLRGF---DTDISIEVNEIKRSV---------ASSSRRTTIRFSELK 274 (485)
Q Consensus 216 ~~~~e~---------p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 274 (485)
...+.. |..+..+................ .....+......... .+..+.++.. .+..
T Consensus 203 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~ 281 (498)
T COG3104 203 LLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERR 281 (498)
T ss_pred HHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHH
Confidence 444321 11111111111111110000000 000000000000000 0000000000 1100
Q ss_pred hcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc--CCC-chhhHHHHHHHHHHHHHHHHHHHHHHhcch-----h-
Q 011470 275 QRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA--GIT-SSDVATLGLGALQVIATGVTTWLADKAGRR-----A- 345 (485)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~- 345 (485)
|-....+.++...+.+..+-...+.+..|.....+.. |++ +.........+.-++.+++..++..|.+++ .
T Consensus 282 r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~ 361 (498)
T COG3104 282 RLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP 361 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcc
Confidence 0011112222223333333333333344433333221 222 222444555566667777777777774333 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH
Q 011470 346 -LLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA 424 (485)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 424 (485)
-.-++...+..+++++............ ..+..+.+...++....-...+|+..+++....|+...+..+++.
T Consensus 362 ~KFalGl~l~g~~fl~l~~~~~~~~~~~~------~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w 435 (498)
T COG3104 362 IKFALGLILAGLGFLILLLAGIWFGGPSG------LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCC------CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence 2344555556666655554222221000 111233344444445555677888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHhhcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 425 TLANWLTVWLITMTANL-------LLNWSGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 425 ~~~~~~g~~~~~~i~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
......|..++..+.+. .........+..++.+..+.........|
T Consensus 436 fLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 436 FLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888877772 22233333455555555554444444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=158.72 Aligned_cols=175 Identities=10% Similarity=0.070 Sum_probs=133.7
Q ss_pred hhHHHH-HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHH
Q 011470 69 PTQTAI-TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA---ISFARESSFLYMGRL 144 (485)
Q Consensus 69 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~r~ 144 (485)
..+|.+ .+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|+
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345654 4678998888888888899999999999999999999999988887654433322 223456778888999
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHHHHHHhhccC
Q 011470 145 LEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTILITGLFFIP 219 (485)
Q Consensus 145 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~ 219 (485)
+.|++.+........++.|.+|++.|+.+.++......++..++|.+.+++ +|+..++...++.++.++..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999988877777888899999999999999974444445556666666554 477776665666666666667789
Q ss_pred CchhHHHhc-----CCHHHHHHHHHHHhC
Q 011470 220 ESPRWLAKM-----GMTEDFEASLQVLRG 243 (485)
Q Consensus 220 e~p~~~~~~-----~~~~~~~~~~~~~~~ 243 (485)
|+|+++.++ ++.+|+++.+++++.
T Consensus 431 es~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCCccccccchhhHHHHhhcccc
Confidence 999987755 888999999988863
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-14 Score=127.21 Aligned_cols=325 Identities=14% Similarity=0.096 Sum_probs=214.7
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhc-----hhHHHHH-HHHHHHHHHHHHHHh-----h-------
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIG-----RKGSLMI-AAIPNIIGWLAISFA-----R------- 134 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~~~-~~~l~~~~~~~~~~~-----~------- 134 (485)
.+..|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4677899999999999998887765 5899999999999 7766554 666666666655553 2
Q ss_pred hH--H--HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc--c---chh---HHH
Q 011470 135 ES--S--FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--P---WRI---LAV 202 (485)
Q Consensus 135 ~~--~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~---wr~---~f~ 202 (485)
+. + ...+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+ + -|. .-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 12 2 3445668889999999999999999999999999999999999999999998887665 2 222 222
Q ss_pred hhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhH
Q 011470 203 LGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPL 282 (485)
Q Consensus 203 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (485)
...+..++.++.. +-.|.+.. ... ...++++..-...++++..++..+++
T Consensus 164 ~a~i~~~l~~ia~-wg~E~r~~-~~~----------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f 213 (403)
T PF03209_consen 164 VALIALLLNLIAL-WGQEPRRS-RRA----------------------------AAAERPRPPFREAWRQVWASPQARRF 213 (403)
T ss_pred HHHHHHHHHHHHH-HhcccCCc-ccc----------------------------cCCCCCCccHHHHHHHHHhCCChhHH
Confidence 2222222222222 22332210 000 00011222233456666666666665
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLAD-KAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~ 359 (485)
+..+.+..+..+.- -...-|+=-+-+|++..+ ......+.+.++|..+.+++.. |.++++...+++....+++.
T Consensus 214 ~~fl~l~t~a~~~Q---D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQ---DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHHHHHhh---HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 55555544432111 111223333445777665 5555667788888888887766 66777777788888888777
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
++.......+. +......++++++.+....... +...+..++++.|..+|.....+.++..++..+.
T Consensus 291 lii~a~~~~~~------------~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 291 LIILAGPLGSP------------WLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLG 357 (403)
T ss_pred HHHHHHhcccc------------hHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 76665433322 3444555555555554444443 6777888889999999999999999999999999
Q ss_pred HHHHH
Q 011470 440 NLLLN 444 (485)
Q Consensus 440 g~~~~ 444 (485)
|.+.|
T Consensus 358 G~~~D 362 (403)
T PF03209_consen 358 GALRD 362 (403)
T ss_pred HHHHH
Confidence 99988
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-18 Score=167.59 Aligned_cols=382 Identities=18% Similarity=0.146 Sum_probs=3.0
Q ss_pred HhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 011470 53 VALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF 132 (485)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 132 (485)
.++..+...+..+.....++.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33334444667777788899999999999999999999999999999999999999998999999999999999998875
Q ss_pred hh--------------------------------------------------hHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 011470 133 AR--------------------------------------------------ESSFLYMGRLLEGFGVGIISYTVPVYIA 162 (485)
Q Consensus 133 ~~--------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~i~ 162 (485)
-+ -+..++++.++.|+|....++...+++-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 0346888999999999999999999999
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----------------------cchhH----HHhhHHHHHHHHHHhh
Q 011470 163 EIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----------------------PWRIL----AVLGILPCTILITGLF 216 (485)
Q Consensus 163 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------------------~wr~~----f~~~~~~~~~~~~~~~ 216 (485)
|..++++-+..+|+..+...+|.++|.++++.. .|-.. |++.+...++..+.++
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888654 14333 4443444444444445
Q ss_pred ccCCc-hhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHH--HHhhccccchhhhHHhhhcccchhHHHHHHHHHHHh
Q 011470 217 FIPES-PRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKR--SVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQ 293 (485)
Q Consensus 217 ~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (485)
++|+. |+....+++.+..++..+. ....+..+.+. ......++-....+.++++ +.++...+.....
T Consensus 248 ~FPk~lp~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N----p~f~~~~la~~~~ 317 (539)
T PF03137_consen 248 FFPKKLPGTSERQEEKESSERKEED------SDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN----PVFMCLILAGVFE 317 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCCCcccccchhhhhhcchhh------hhhhcccccccccchhhhhhhHHHHHHHHhcC----hHHHHHHHHHHHH
Confidence 55554 3220000000000000000 00000000000 0000011112223333433 4466666666666
Q ss_pred hcchhhHHHhHHHHHhH-cCCCchh---hHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHH--
Q 011470 294 LSGINGVVFYSSTIFES-AGITSSD---VATLGLGALQVIATGVTTWLADKAG--RRALLIISSVGMTVSILIVAVSF-- 365 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~-- 365 (485)
.....++..+.|.|+|. ++.++.. +.....-.+..+|.+++|++.+|++ .|..+....+...++.+......
T Consensus 318 ~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~ 397 (539)
T PF03137_consen 318 SFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFL 397 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 66778888899998875 4776555 2222334466789999999999985 34444444433333333211111
Q ss_pred --Hhhcc----cCC-------C---------------------Ccchhh---HHHHHHHHHHHHHHHHhcCcccchhhhc
Q 011470 366 --FVKGF----VSD-------D---------------------SSCYSI---LDIFSVIGVVAMVVTFSLGMGPIPWVIM 408 (485)
Q Consensus 366 --~~~~~----~~~-------~---------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (485)
..... .++ . ...... ..+..++..++..+..+....|.. ...
T Consensus 398 ~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~ 476 (539)
T PF03137_consen 398 GCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LIT 476 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eee
Confidence 00000 000 0 000000 112222233333333344444555 566
Q ss_pred cccCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011470 409 SEILPINIKGLAGSVATLANW-LTVWLITMTANLLLNW 445 (485)
Q Consensus 409 ~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~i~g~~~~~ 445 (485)
-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|.
T Consensus 477 LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 477 LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------
T ss_pred eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 678899999999999976655 5777899999999983
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=145.54 Aligned_cols=296 Identities=19% Similarity=0.205 Sum_probs=204.1
Q ss_pred HHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH
Q 011470 48 ACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGW 127 (485)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~ 127 (485)
..+.++++..+..++..+.+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|.-|-+.+-+|++++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34455666666777777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----------h----------------------------------------HH-HHHHHHHHHhhhhhhhhh
Q 011470 128 LAISFAR-----------E----------------------------------------SS-FLYMGRLLEGFGVGIISY 155 (485)
Q Consensus 128 ~~~~~~~-----------~----------------------------------------~~-~~~~~r~l~G~~~~~~~~ 155 (485)
+++++-+ + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 9998621 0 22 577888999999999999
Q ss_pred hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----------------------cchhHHHhhHHHHHHHH
Q 011470 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----------------------PWRILAVLGILPCTILI 212 (485)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----------------------~wr~~f~~~~~~~~~~~ 212 (485)
...+++-|...+++-+..+|+......+|+++|.+++++. .|..-|++.+...++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765 15555666666666666
Q ss_pred HHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchh---hhHHhhhcccchhHHHHHHHH
Q 011470 213 TGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTI---RFSELKQRRYYFPLTVGIGLL 289 (485)
Q Consensus 213 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 289 (485)
+.++++|...+...++ .+ .+..+.....++ ..++...... .+....++....++++...+.
T Consensus 337 ~p~f~fPk~lp~~~~~---~~-~~~~~~~k~~~~------------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~ 400 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKR---KR-ARDLHVLKTESG------------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLA 400 (735)
T ss_pred HHHHhCcccCcccccc---ch-hhhhcccccccc------------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHH
Confidence 6666776553111100 00 000000000000 0001111111 122222233334446666667
Q ss_pred HHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHH-HHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHH
Q 011470 290 ILQQLSGINGVVFYSSTIFES-AGITSSD--VATL-GLGALQVIATGVTTWLADKAG--RRALLIISSVGMTVSIL 359 (485)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~-~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~ 359 (485)
.......+.+...|+|.|+++ +|.++.. .... +.-.+..+|.+++|++.+|+. .|....+..+...+..+
T Consensus 401 ~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 401 SVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred HHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 777777788888999999875 5877655 2222 223455688999999999875 34444444443333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=118.18 Aligned_cols=132 Identities=22% Similarity=0.367 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCC
Q 011470 89 ASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN 168 (485)
Q Consensus 89 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 168 (485)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHhhccCC
Q 011470 169 LRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGLFFIPE 220 (485)
Q Consensus 169 ~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~~~~e 220 (485)
+|++..++......+|..+++.+++.+ +|++.+++.....++ .+...++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999998888766 799988886655555 4444444555
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-13 Score=126.95 Aligned_cols=351 Identities=15% Similarity=0.143 Sum_probs=213.7
Q ss_pred HHHHhhhhccccccccccchhHHHHHhhhCCCchh-hhHHHHHH----HHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 011470 50 VLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSE-FSLFASLS----NVGAMVGAITSGQISEYIGRKGSLMIAAIPNI 124 (485)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~----~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~ 124 (485)
.....+-.+..++......+..+.....++-+..+ .+...... .+...+.++..|.++||+|||..+.+..+...
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~ 103 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI 103 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence 33444444445566666666666676666544332 33334444 67888999999999999999999999999888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--hhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cch
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFG--VGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWR 198 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr 198 (485)
+..+...+.. +| +++ +.|+. .+.......++++|....++|....++.......+..++|.+++.+ |.-
T Consensus 104 l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a 178 (463)
T KOG2816|consen 104 LPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIA 178 (463)
T ss_pred HhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCch
Confidence 8888777766 33 333 44443 3345677788899999999999999999998999999998888776 666
Q ss_pred hHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcc
Q 011470 199 ILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRR 277 (485)
Q Consensus 199 ~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
.+|.++.+..++ .+..++++||+-.... +.+ ......... +.........++...+.
T Consensus 179 ~~f~ia~~~~~~~~~y~~~~l~Esl~~~~---~~~---~~~~~~~~~---------------~~~~~~~~~~~~~~~~~- 236 (463)
T KOG2816|consen 179 LVFLIAAASGILSLLYMLLFLPESLQEKE---RSD---ATLRELTPG---------------SLDSSHVADAFQSLTKV- 236 (463)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCccc---ccc---ccccccCCC---------------cccchhhhhhhhhhccc-
Confidence 778887766666 5666778888732110 000 000000000 00000011111112211
Q ss_pred cchhHHHHHHHHH-HHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHH-HHHHHhcchhHHHHHHH
Q 011470 278 YYFPLTVGIGLLI-LQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTT-WLADKAGRRALLIISSV 352 (485)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~ 352 (485)
...+..+...+.. +..........-..+.+. ..++++... ......+....++.++.. .+...++.|+.+..|..
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLL 316 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Confidence 1111122211111 111000000000011111 234676666 334445667777777666 67777888888888888
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHH
Q 011470 353 GMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTV 432 (485)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 432 (485)
...+....+++... .|..... .....++....|...+..+...+++++|.+.++...+..+.+
T Consensus 317 ~~~~~~~~~af~~~---------------~w~~~~~--~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~ 379 (463)
T KOG2816|consen 317 SEFLQLLLFAFATE---------------TWMMFAA--GVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG 379 (463)
T ss_pred HHHHHHHHHHHhcc---------------chhhhHH--HHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh
Confidence 77777777776521 1221111 122223334445556888888899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011470 433 WLITMTANLLLN 444 (485)
Q Consensus 433 ~~~~~i~g~~~~ 444 (485)
.++|.+.+.+..
T Consensus 380 ~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 380 VVSPALYGNIFA 391 (463)
T ss_pred hhhHHHHHHHHH
Confidence 999999998876
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=130.28 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=124.7
Q ss_pred hhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 011470 69 PTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEG 147 (485)
Q Consensus 69 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G 147 (485)
...|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+.++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34554 55778999999999988888888899999999999999999888877766666555566788888889999999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 148 FGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
++.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+ +|+..|++..+..++.++..+++||
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 98888778888888999885 589999999888899999988888765 8999998877777777776667665
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=137.68 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=122.7
Q ss_pred hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 011470 76 RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISY 155 (485)
Q Consensus 76 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 155 (485)
++.+.+..+.|++.++..++..++.+++|+++||+|+|+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34466777899999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHhcCCCCcchhHHHH-HHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHhhccCCch
Q 011470 156 TVPVYIAEIAPQNLRGALGSV-NQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGLFFIPESP 222 (485)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~~~~e~p 222 (485)
....++.|.+|++.|+...+. ++....+|.++++.+.+.+ |||..|.+.++..++ .++.+..+++++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 888999999999998877655 5667788888888887766 899999985555444 444455555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=114.78 Aligned_cols=254 Identities=12% Similarity=0.064 Sum_probs=158.3
Q ss_pred ccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011470 66 YSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLL 145 (485)
Q Consensus 66 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l 145 (485)
..+|..-.+-+++|.+..|++.+....+...++..++.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 445666667789999999999999999999999999999999999999999999999999886 4566899999999999
Q ss_pred HhhhhhhhhhhHHHHH-HhcC----CCCcchhHHHHHH-HHHHHHHHHHHHhhccc----cc--hhHHHhhHHHHHHH-H
Q 011470 146 EGFGVGIISYTVPVYI-AEIA----PQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV----PW--RILAVLGILPCTIL-I 212 (485)
Q Consensus 146 ~G~~~~~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~w--r~~f~~~~~~~~~~-~ 212 (485)
.|++.+..+.+-.++. .|.- |++..+..++... ...++-.+.+.+++..+ +. ..+|..+.+..++. +
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999888774 4542 3232333333322 22333334444444443 33 57888877666653 4
Q ss_pred HHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHH
Q 011470 213 TGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQ 292 (485)
Q Consensus 213 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (485)
++....+|......++... .++-+..++.+++++ +.+..-....++
T Consensus 211 ~I~~~W~ENyg~~~~~~~~-------------------------------~~~~~~a~~~i~~d~---ril~LG~~qslF 256 (354)
T PF05631_consen 211 LILKTWPENYGDTSSSSSL-------------------------------SGSFREAWRAILSDP---RILLLGLIQSLF 256 (354)
T ss_pred HHHhcccccCCCcccccch-------------------------------HHHHHHHHHHHHcCc---hhHHHHHHHHHH
Confidence 4444556653110000000 000111223333322 224444455555
Q ss_pred hhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHH
Q 011470 293 QLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADK-AGRRALLIISSVGM 354 (485)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~ 354 (485)
....+..+..|.|.+..+-.--+....+..+.++.++|+.+..++..+ ......+.....+.
T Consensus 257 E~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~a 319 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVA 319 (354)
T ss_pred HHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 555555666677776522111133366667778888998888765544 33333333333333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=133.88 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=125.3
Q ss_pred hhHHHHHhhhCCCc--------hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh----hH
Q 011470 69 PTQTAITRDLELTL--------SEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR----ES 136 (485)
Q Consensus 69 ~~~~~i~~~~~~s~--------~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~----~~ 136 (485)
...+...++.|.++ .+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 34455556666443 5679999999999999999999999999999999999999988877776632 34
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHhhccc----------cchhHHHhhH
Q 011470 137 SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV----------PWRILAVLGI 205 (485)
Q Consensus 137 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----------~wr~~f~~~~ 205 (485)
+.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|.++||++++.+ ||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667888999999999988999999999999999999999997 67889999998888754 4999988865
Q ss_pred HHHHH-HHHHhhccCCc
Q 011470 206 LPCTI-LITGLFFIPES 221 (485)
Q Consensus 206 ~~~~~-~~~~~~~~~e~ 221 (485)
+..++ .++..++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 55444 56666777876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=130.32 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=127.2
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFG 149 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~ 149 (485)
..|.+.++.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 46777788999999999999999999999999999999999999999888777777777777788888888888999998
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 150 VGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......++..+..+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999999999999999999999999998876 4556666655555554444444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=136.72 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 011470 86 SLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIA 165 (485)
Q Consensus 86 ~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (485)
.+...+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.++..+...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566778999999999999999999999999999999999999999998888899999999988888999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHHHHHHhhccCCch
Q 011470 166 PQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
|.++|++++|+......+|.+++|.+++.+ +...+|++.++..++..++..++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998765 345667776666666666666779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=129.65 Aligned_cols=142 Identities=15% Similarity=0.064 Sum_probs=121.6
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHH
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARES--SFLYMGRLLE 146 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~r~l~ 146 (485)
...+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+.++..+.+++.++..+.++. ..+++..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999998888888777643 3355677888
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI 210 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~ 210 (485)
|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|++.++..++
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 9988888888888999999999999999999999999999999887765 899998886665554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-13 Score=126.31 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=124.5
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGF 148 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~ 148 (485)
..++.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 314 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555565 345677788899999999999999999999999999999888888888888898888899999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCCc
Q 011470 149 GVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPES 221 (485)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e~ 221 (485)
+.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+...++.++..++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998888888888999999999999999999999988887776655 89999988776666655554445443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=124.18 Aligned_cols=349 Identities=13% Similarity=0.127 Sum_probs=191.6
Q ss_pred chhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh---c--hhHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 011470 68 SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI---G--RKGSLMIAAIPNIIGWLAISFA----RESSF 138 (485)
Q Consensus 68 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~---G--rr~~~~~~~~l~~~~~~~~~~~----~~~~~ 138 (485)
.+..|.+++++|+++++.....+...+...+ -++.|.++|-+ | ||+-++++.++.+++.+..+.. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3467889999999999999999999888877 56799999976 3 5555666777776666655553 35666
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCC--CCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-H
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAP--QNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-L 211 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~ 211 (485)
..+.-++..+|.+....++-+++.|... ++.||...+.......+|.+++..+++.+ ++|..|.+.++...+ .
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 7777788999999999999999999874 33467778888888888888888777666 788888886655444 3
Q ss_pred HHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhccc-chhHHHHHHHHH
Q 011470 212 ITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRY-YFPLTVGIGLLI 290 (485)
Q Consensus 212 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 290 (485)
+...+..+|.++. ++.+.....+ + .........++.....++.++.+. +++......+..
T Consensus 169 ~~~~~~~~e~~~~--~~~~~~~~~~----------~-------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 229 (433)
T PF03092_consen 169 IVALFLLEERKVR--PADEVFSFGK----------E-------EVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN 229 (433)
T ss_pred HHHHHhhhhcccc--ccchhhcccc----------c-------ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444444442110 0000000000 0 000000000011112222232222 222221111111
Q ss_pred HHhhcchhh-HHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-
Q 011470 291 LQQLSGING-VVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFF- 366 (485)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 366 (485)
+.... ..+ ..++........++++.. ....+..++.++|..+......+..-|+++....++..+..+.-.+...
T Consensus 230 ~~~~~-~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~ 308 (433)
T PF03092_consen 230 LPPSI-SSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTR 308 (433)
T ss_pred hccCC-CCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEE
Confidence 11111 011 111111111111244433 2223334555555555555555555566655544443332221111100
Q ss_pred hhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 367 VKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.....+-++... .+.--.+........+-|.. ..++|..|+...|+..++...+.++|..++..+...+.+
T Consensus 309 ~n~~~Gi~d~~f------~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 309 WNLDLGIPDQWF------ALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred EeeeeCcCCeEE------EEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111 11111222233333334444 788999999999999999999999999999999988877
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-13 Score=123.96 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=138.0
Q ss_pred cccccccchhHHHHHhhh-CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhH-HHHHHHHHHHHHHHHHHHhhhHHH
Q 011470 61 GFTCGYSSPTQTAITRDL-ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKG-SLMIAAIPNIIGWLAISFARESSF 138 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~l~~~~~~~~~~~~~~~~ 138 (485)
...........|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+...+.++.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 334444455666666664 999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHH
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITG 214 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~ 214 (485)
+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+ +|+..+++.++..++..+.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888765 8999999877777665554
Q ss_pred hhc
Q 011470 215 LFF 217 (485)
Q Consensus 215 ~~~ 217 (485)
.++
T Consensus 348 ~~~ 350 (352)
T cd06174 348 LLL 350 (352)
T ss_pred hee
Confidence 443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=122.12 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=123.7
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGI 152 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~ 152 (485)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998888888888999999999999999999888877777666667778888888999999999998
Q ss_pred hhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 153 ISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
..+....++.|..|+ +++++.++++....+|..++|.+++.+ +|+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888999999875 567999999999999999998887765 8999999877777776666665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-11 Score=111.11 Aligned_cols=347 Identities=14% Similarity=0.139 Sum_probs=205.6
Q ss_pred hhHHHHHhh-hCCCchhhh-HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011470 69 PTQTAITRD-LELTLSEFS-LFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLE 146 (485)
Q Consensus 69 ~~~~~i~~~-~~~s~~~~~-~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~ 146 (485)
...|.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++.
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y 104 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY 104 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 345666665 899988874 566777788888999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
|++.+. ..+-.+++-...|+++-.++.+...++.-+|..++.++|..+ +.+...++......++++..+++|.
T Consensus 105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998876 477788888888988888999888888888888888887665 4556666766666667777778887
Q ss_pred chhHHHhcCCHHHHHHHHHHHhCCCcchHHHHH-HHHHHHhhccccchhhhHHhh---hcccchhHHHHHHHHHHHhhcc
Q 011470 221 SPRWLAKMGMTEDFEASLQVLRGFDTDISIEVN-EIKRSVASSSRRTTIRFSELK---QRRYYFPLTVGIGLLILQQLSG 296 (485)
Q Consensus 221 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 296 (485)
.++...-+++.++... .++....+.+...+.. +..+..+..+......++.+. +.-+..+.++...+.+....++
T Consensus 184 ~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg 262 (412)
T PF01770_consen 184 PKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG 262 (412)
T ss_pred CCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence 6543322221111000 0000000000000000 000000000111111111111 1222333355555556666666
Q ss_pred hhhHHHhHHHHHhHcCCC-chh----hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011470 297 INGVVFYSSTIFESAGIT-SSD----VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFV 371 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (485)
+..+..|...+.++..-+ ... ..-....+.+.++.+..|++-.++.+..-+..+......+.+++.... .
T Consensus 263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-t---- 337 (412)
T PF01770_consen 263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-T---- 337 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-h----
Confidence 777788887777776221 111 334445666777788888875555544333333322222222222211 1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHH
Q 011470 372 SDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLT 431 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (485)
...+...+..+++...+..... +...-++.....+.-|...|+.++...+-
T Consensus 338 --------~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~L 388 (412)
T PF01770_consen 338 --------GNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVL 388 (412)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHH
Confidence 1123344444455555544332 33334444445677777888777655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=121.57 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=123.9
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLE 146 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~ 146 (485)
.....|...+|+|.++.+.|++.+...++..++.++.|++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++
T Consensus 224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 33455666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHH
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILIT 213 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~ 213 (485)
|++.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.+...++..+
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999999999999998 9899999999986 56788888888888777 54 345554444444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=122.29 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=122.3
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGF 148 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~ 148 (485)
...|.+.++.|.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445555666654 35666777888889999999999999999999999999999998888888888888899999999
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHh
Q 011470 149 GVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGL 215 (485)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~ 215 (485)
+.+...+...+.+.|.+|+++|+++.++.+....+|..++|.+.+.+ ||+..|.+.+...++..+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 99988888888999999999999999999999999999999888766 89999998776666544333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=124.53 Aligned_cols=146 Identities=9% Similarity=0.023 Sum_probs=120.6
Q ss_pred ccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh--chhHHHHH--HHHHHHHHHHHHHHhhhHHHHHH
Q 011470 66 YSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI--GRKGSLMI--AAIPNIIGWLAISFARESSFLYM 141 (485)
Q Consensus 66 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~--~~~l~~~~~~~~~~~~~~~~~~~ 141 (485)
.....+|.+.+++|.+..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.++..+.++++.+++
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i 338 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI 338 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 333456777788999999999999999999999999999999983 44443333 34444555666677889999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHHH
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTIL 211 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~~ 211 (485)
.+++.|++.+...+...+++.|.+|++++++..++++....+|.+++|.+++.+ +|++.|++.++..++.
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 5999988866655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-12 Score=122.98 Aligned_cols=150 Identities=14% Similarity=0.076 Sum_probs=108.2
Q ss_pred cchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHH
Q 011470 67 SSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA--ISFARESSFLYMGR 143 (485)
Q Consensus 67 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~r 143 (485)
....+|. +++++|.+..+.++..+...++..++.+++|+++||+|||+.+..+..+..++..+ ....++.+...+.+
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASL 356 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445664 56779999999999999999999999999999999999998877655544443322 22345666777888
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHH-HHHHHHHhhcc----------------ccchhHHHhhHH
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTI-GIMLAYLLGLF----------------VPWRILAVLGIL 206 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~----------------l~wr~~f~~~~~ 206 (485)
++.|++.............|.+|+++|+.+.|+.+....+ |..++|.+.+. .+|+..|++..+
T Consensus 357 ~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~ 436 (467)
T PRK09556 357 FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDI 436 (467)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHH
Confidence 8888654444334446677999999999999999888776 65666554432 258988887655
Q ss_pred HHHHHHHHhh
Q 011470 207 PCTILITGLF 216 (485)
Q Consensus 207 ~~~~~~~~~~ 216 (485)
..++..+..+
T Consensus 437 ~~~~~~~~~~ 446 (467)
T PRK09556 437 AAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=123.63 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=122.3
Q ss_pred cchhHHHHHhhhCCCchh----hhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011470 67 SSPTQTAITRDLELTLSE----FSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMG 142 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~----~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (485)
..+..+.+.++.+.+..+ .+.+.+++.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345556555554333332 4566777788888999999999999999999999998888888888888889999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHh
Q 011470 143 RLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGL 215 (485)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~ 215 (485)
+++.|++.+...+...+.+.+..|+++|++.+++......+|..++|.+++.+ +|++.|++.++..++..+..
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888766 89999998776666644433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=120.95 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=129.1
Q ss_pred hhHHHHHhh-hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 011470 69 PTQTAITRD-LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEG 147 (485)
Q Consensus 69 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G 147 (485)
...|.+.++ +|.+..+.+++.+...++..++.++.|++.||.++++.+..+.++.+++.++..+.++.+...++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345666666 8999999999999999999999999999999988888888888888888888888888888888999999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH-HHHHHHHHHhhccCCch
Q 011470 148 FGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI-LPCTILITGLFFIPESP 222 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~-~~~~~~~~~~~~~~e~p 222 (485)
++.+...+...+++.|..|+++|+++.+++.....+|..+++.+.+.+ |++..++..+ +..++.++....+||.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 999888888889999999999999999999998888988888888766 6777776644 44444566666667654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=114.39 Aligned_cols=171 Identities=14% Similarity=0.092 Sum_probs=114.1
Q ss_pred HHHHHHHhhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
+.+..+....+......+.+.++ ++.|.+..+ .......+..+++.++.|+++||+|||+.+..+.....++.+.+.
T Consensus 12 l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~ 91 (395)
T PRK10054 12 LLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP 91 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 33334444444555555666555 567988776 444455678889999999999999999998888877777666555
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLL 442 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~ 442 (485)
+... .+..++...+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+
T Consensus 92 ~~~~---------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 92 LVNN---------------VTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHhH---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 1122222223333322 23444558889999999999999999999999999999999998
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhcccC
Q 011470 443 LNWSGGGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
.+.+....+...+++.++..+...+..+|.
T Consensus 156 ~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 156 VMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 876555566655555555444444444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=121.53 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=110.0
Q ss_pred cchhHHHHH-hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH--HHHHHh--hhHHHHHH
Q 011470 67 SSPTQTAIT-RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGW--LAISFA--RESSFLYM 141 (485)
Q Consensus 67 ~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~--~~~~~~--~~~~~~~~ 141 (485)
.....|.+. +++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+. ++.+.+.+
T Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
T TIGR00883 238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFF 317 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556554 7789999999999999999999999999999999999998876555444333 222222 46777778
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHH-HHHHHHHHHHHHHHhhccc----c-chhHHHhhHHH
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSV-NQLSVTIGIMLAYLLGLFV----P-WRILAVLGILP 207 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~-wr~~f~~~~~~ 207 (485)
..++.|++.+...+...+++.|.+|+++|+++.++ +..+..+|..++|.+++.+ + |++.++..+..
T Consensus 318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 318 LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 88999999999999999999999999999999887 4556667887888877665 5 88776665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=116.81 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=113.8
Q ss_pred HHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhh
Q 011470 71 QTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGW-LAISFARESSFLYMGRLLEGFG 149 (485)
Q Consensus 71 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~r~l~G~~ 149 (485)
.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+... +..+..++. .+..+.++.+.+.+..++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34556668999999999999999999999999999999999887544 444444443 3445567888888899999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHH-HHHhhccC
Q 011470 150 VGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTIL-ITGLFFIP 219 (485)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~-~~~~~~~~ 219 (485)
.+...+.....+.+..| ++|+++++++.....+|..+||++++.+ |++..|++.++..++. +..+...+
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 88777778888888876 6789999988888888888888777655 8999998877666663 33334343
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.6e-12 Score=118.94 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=107.0
Q ss_pred cccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhH--HHH------HHHHHHHHHHHHHHHh
Q 011470 63 TCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKG--SLM------IAAIPNIIGWLAISFA 133 (485)
Q Consensus 63 ~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~--~~~------~~~~l~~~~~~~~~~~ 133 (485)
.........|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+..+.++........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV 309 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334445555 45668999999999999999999999999999999999996 111 1111111222222223
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c-chhHHHhhHHHH
Q 011470 134 RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P-WRILAVLGILPC 208 (485)
Q Consensus 134 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-wr~~f~~~~~~~ 208 (485)
++.+......++.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |+..|++.++..
T Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~ 388 (399)
T TIGR00893 310 NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALA 388 (399)
T ss_pred hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHH
Confidence 344555545555555554 7889999999999999999999999999999999999888776 5 898888766655
Q ss_pred HHHH
Q 011470 209 TILI 212 (485)
Q Consensus 209 ~~~~ 212 (485)
++..
T Consensus 389 ~~~~ 392 (399)
T TIGR00893 389 LIGA 392 (399)
T ss_pred HHHH
Confidence 5533
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=117.01 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=118.8
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGF 148 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~ 148 (485)
..+|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+..++.+... + ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346777778899999999999999999999999999999999999999988888777665443 2 2334457788888
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhcc
Q 011470 149 GVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFI 218 (485)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 218 (485)
+.....|...+.+.|..|+++++...+......++|.+++|.+++.+ +|++.|.+.+...++..+..+..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 88888899999999999988888888888888999999999888776 79999888666655544444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=118.73 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=110.5
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHHhh
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF---A-RESSFLYMGRLLEGF 148 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~r~l~G~ 148 (485)
.+.+++|.+..+...+.........++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456778988877666666677777889999999999999999998887766555443332 1 234445556677788
Q ss_pred hhhhhhhhHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHhhccc------cchhHHHhhHHHHHHHHHHhhccCCc
Q 011470 149 GVGIISYTVPVYIAEIAPQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV------PWRILAVLGILPCTILITGLFFIPES 221 (485)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~~~~~~~~~~~e~ 221 (485)
+.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+ +|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888888999999999999988888854 44557888888777665 37877777666666655555666664
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-11 Score=113.74 Aligned_cols=178 Identities=12% Similarity=0.011 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVS 357 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 357 (485)
+...+...+.++........+.+..|.+.+++|.+..+ .......++..++.+..|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33455555555555555666777778888888988776 4555667888899999999999999999998888888877
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITM 437 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 437 (485)
.++...... .....+.-++.+.+.+.. .+....++.|.+|+++|++++|+.+....+|..+++.
T Consensus 87 ~~~~~~~~~---------------~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 87 STATMFATG---------------PESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHhcC---------------HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665311 122333344444444433 3555578899999999999999999999999999999
Q ss_pred HHHHHHHh-------hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 438 TANLLLNW-------SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 438 i~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
+.+.+.+. +....+.+.++..++...+.++++||++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 99988752 3444555555555555555666677655
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=118.16 Aligned_cols=151 Identities=14% Similarity=0.053 Sum_probs=122.7
Q ss_pred hhHHHHH-hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 011470 69 PTQTAIT-RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEG 147 (485)
Q Consensus 69 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G 147 (485)
...|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4566555 678999999999999999999999999999999999999998888877777777777788877778889999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCC
Q 011470 148 FGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPE 220 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e 220 (485)
++.+..++...++..|..| +++++..+.......+|..++|.+.+.+ ||+..+++..+..++..+....++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9888888888888888776 4467778888888889999998887766 8999888866666655454554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-12 Score=123.98 Aligned_cols=160 Identities=15% Similarity=0.035 Sum_probs=120.9
Q ss_pred cccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----h---
Q 011470 63 TCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA-----R--- 134 (485)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~--- 134 (485)
.........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. +
T Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 33444556788888999999889999999999999999999999999999999999988888877777631 1
Q ss_pred ---hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHH
Q 011470 135 ---ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILP 207 (485)
Q Consensus 135 ---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~ 207 (485)
+...+....++.+.......+....++.|.+|+++|+++.++......+|.+++|.+.+.+ +|++.|++.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~ 458 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence 2333333333333333334466677789999999999999999999999999999887654 799988886665
Q ss_pred HHH-HHHHhhccCCch
Q 011470 208 CTI-LITGLFFIPESP 222 (485)
Q Consensus 208 ~~~-~~~~~~~~~e~p 222 (485)
.++ .++..++.||++
T Consensus 459 ~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 459 NVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHheecccCC
Confidence 555 444555667653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=116.45 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=115.2
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hH-H-HHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ES-S-FLYMG 142 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~-~-~~~~~ 142 (485)
.....|.+.+++|.+..+.++......+...++.++.|+++||+|||++++.+..+.+++.++.+... +. + ....+
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 34456888889999888788888888889999999999999999999999999999988888776542 11 1 22334
Q ss_pred HHHHhhhhhh-hhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc----------cccchhHHHhhHHHHHH-
Q 011470 143 RLLEGFGVGI-ISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL----------FVPWRILAVLGILPCTI- 210 (485)
Q Consensus 143 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~----------~l~wr~~f~~~~~~~~~- 210 (485)
-++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.. ..+|++.|++.++..++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 4444444443 23677899999999999999999999888888887743332 23688888885555444
Q ss_pred HHHHhhccCCch
Q 011470 211 LITGLFFIPESP 222 (485)
Q Consensus 211 ~~~~~~~~~e~p 222 (485)
.++.+++.||+.
T Consensus 450 ~~~~~~~~~e~~ 461 (479)
T PRK10077 450 ALFMWKFVPETK 461 (479)
T ss_pred HHHHHhccccCC
Confidence 444555677764
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=113.03 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=118.1
Q ss_pred HHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 285 GIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
...+.++..+........+.|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+.++.++..++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 334444444333445667788999999998766 444566788899999999999999999999988888887777665
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLL 442 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~ 442 (485)
.... .+...+..++.+.+.+... +....++.|.+|+++|++++|+.+....+|..++|.+.+.+
T Consensus 107 ~~~~---------------~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 107 FSSS---------------LWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHhH---------------HHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 1122233333444444443 34448889999999999999999999999999999999999
Q ss_pred HHh-hcchhHHHHHHHHHHHHHHHHHhccc
Q 011470 443 LNW-SGGGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 443 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+. +....+.+.+++.++..++..+.++|
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 884 43344544454444444444444444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=113.33 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=118.2
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR-ESSFLYMGRLL 145 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l 145 (485)
....+|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++
T Consensus 224 ~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l 301 (393)
T PRK09705 224 LIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMV 301 (393)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHH
Confidence 33456666677899999999999999999999999999999999999999998888777766554333 22222 2346
Q ss_pred HhhhhhhhhhhHHHHHHhcCC-CCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHH-HHHHhhcc
Q 011470 146 EGFGVGIISYTVPVYIAEIAP-QNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTI-LITGLFFI 218 (485)
Q Consensus 146 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~-~~~~~~~~ 218 (485)
.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++..+..++ .++...+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 688888888887777777775 57789999999999999999999888777 477778776555554 44445666
Q ss_pred CCch
Q 011470 219 PESP 222 (485)
Q Consensus 219 ~e~p 222 (485)
||++
T Consensus 382 ~~~~ 385 (393)
T PRK09705 382 PARF 385 (393)
T ss_pred cccc
Confidence 7764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=111.30 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 358 (485)
+.+....+..+.............+.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3344555555555555666677778888888988776 45556678889999999999999999999998888777776
Q ss_pred HHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 011470 359 LIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMT 438 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i 438 (485)
++...... .+..+...++.+.+.+.. .+....++.|.+|+++|+.+.++.+....+|..+++.+
T Consensus 92 ~~~~~~~~---------------~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 92 LACGFAPG---------------YITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHhcc---------------HHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66654311 122233344444444433 34445888999999999999999999999999999999
Q ss_pred HHHHHHhhc--chhHHHHHHHHHHHHHHHHHhcccC
Q 011470 439 ANLLLNWSG--GGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 439 ~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
.+.+.+..+ +.......++..+..++.....||+
T Consensus 156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998887432 3333333333333333334445554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=114.65 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=113.3
Q ss_pred chhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-HHHHHHHHHHHHHHH-----hhhHHHHHH
Q 011470 68 SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM-IAAIPNIIGWLAISF-----ARESSFLYM 141 (485)
Q Consensus 68 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~l~~~~~~~~~~-----~~~~~~~~~ 141 (485)
....|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+..++
T Consensus 242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 34567777889999999999999999999999999999999999988764 333333443333332 245677778
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhc
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFF 217 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~ 217 (485)
..++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+ ||+..+++.++..++..+...+
T Consensus 322 ~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 322 IAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88999998887655 4456677654 6899999999999999999999888766 8888888877666665444444
Q ss_pred c
Q 011470 218 I 218 (485)
Q Consensus 218 ~ 218 (485)
+
T Consensus 400 ~ 400 (402)
T TIGR00897 400 I 400 (402)
T ss_pred h
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-11 Score=112.95 Aligned_cols=163 Identities=18% Similarity=0.098 Sum_probs=113.8
Q ss_pred chhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 296 GINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.........|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+..+..++.+.......
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------- 92 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN------- 92 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 3444445567788888988766 4555667888999999999999999999999888877777766654311
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFA 452 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~ 452 (485)
.+...+..++.+.+.+.. .+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+. +....+.
T Consensus 93 --------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 93 --------IETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred --------HHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 112223333333333332 234458899999999999999999999999999999999998884 4444455
Q ss_pred HHHHHHHHHHHHHHHhcccCCC
Q 011470 453 IYTVVSAFTVAFVSIWVPETKG 474 (485)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~ 474 (485)
..+++..+..+..+...||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 5555555555555555665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-11 Score=112.93 Aligned_cols=139 Identities=15% Similarity=0.098 Sum_probs=114.7
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 011470 70 TQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFG 149 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~ 149 (485)
..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555577999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhhhhhHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH
Q 011470 150 VGIISYTVPVYIAEIAPQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI 210 (485)
Q Consensus 150 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~ 210 (485)
.+...+....++.+. +++++++..+... ...++|..+||.+++.+ ++ ..|+..+...+.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 999989999988887 5666788888876 55667777888777766 55 344444444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=114.30 Aligned_cols=169 Identities=16% Similarity=0.107 Sum_probs=116.2
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSF 365 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (485)
+..+.............|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 103 (398)
T TIGR00895 24 LIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT 103 (398)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333333445666778888888887665 444556778899999999999999999999988877777666655421
Q ss_pred HhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 366 FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~ 445 (485)
+ .+...+..++.+.+.+. ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 104 ---~------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 104 ---N------------VTQLLILRFLAGLGLGG-LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred ---c------------hHHHHHHHHHHhccccc-chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 0 12223333334433333 3345558999999999999999999999999999999999998874
Q ss_pred -hcchhHHHHHHHHHHHHHHHHHhcccC
Q 011470 446 -SGGGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 446 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
+....+.+.+++..+..++...+.+++
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 434445544445555555555556654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=105.79 Aligned_cols=172 Identities=14% Similarity=0.077 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
.+.+.+..+..........-.+|.+.++++.+... .....++.+..++.++...+.||+.||+++.....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 55555666666666777788899999999998776 5566778999999999999999999999999999999999998
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 440 (485)
..+...+. ..++.-++.+...+.. .++...+..++.|+++|+++.++++....++..+|.++..
T Consensus 95 ~alAp~f~---------------~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 95 SALAPSFA---------------VLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHhccHH---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 88874332 3344444444444433 3344599999999999999999999999999999999999
Q ss_pred HHHH-hhcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 441 LLLN-WSGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 441 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
++-| .+...+|...+++.++..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999 66667788888888888888888888
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-12 Score=123.10 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=108.1
Q ss_pred chhHHHHH-hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Q 011470 68 SPTQTAIT-RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA--RESSFLYMGRL 144 (485)
Q Consensus 68 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~r~ 144 (485)
...+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++.... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34567666 5899999999999999999999999999999999999999988877766665544433 34445555555
Q ss_pred HHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH
Q 011470 145 LEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI 205 (485)
Q Consensus 145 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~ 205 (485)
+.+.......+....++.|.+|+++|++.+++......+|..++|.+++.+ ||+..+...+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 555444444567778899999999999999999998899999998887765 7887765533
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=109.29 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=110.2
Q ss_pred HHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcch
Q 011470 301 VFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCY 378 (485)
Q Consensus 301 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (485)
....|.+.++.|.++.+ .......+...++.++.|++.||+|||+.+..+.++.+++.++......
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------------ 107 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS------------ 107 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------------
Confidence 34567778888998776 4444567888899999999999999999999998888887766554311
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHH
Q 011470 379 SILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVV 457 (485)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~ 457 (485)
.+..++...+.+.+.+. ..+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+. +....+...+++
T Consensus 108 ---~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 108 ---FSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred ---HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 12233333444444443 3345558889999999999999999999999999999999999884 444445554444
Q ss_pred HHHHHHHHHHhcccC
Q 011470 458 SAFTVAFVSIWVPET 472 (485)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (485)
.++..+......||+
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 444333333345554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=108.33 Aligned_cols=179 Identities=9% Similarity=0.047 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 011470 279 YFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTV 356 (485)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 356 (485)
+...++...+.+...+..-..+..-.|.+.++.++|..+ .....+.+..-++.++.|.++||.+.|..+..+.++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 344456666666665555666777788998998898887 555567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHH
Q 011470 357 SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
..+++++... .....+...+-+.+.+.+++|.. ..+..-+|+++||+..++.|+..++|+.+.|
T Consensus 107 ~nil~Gfs~s---------------~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 107 VNILFGFSPS---------------LFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHhhhhH---------------HHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 9999987631 23445556667777888887877 8888899999999999999999999999999
Q ss_pred HHH--HHHHHhh-cchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 437 MTA--NLLLNWS-GGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 437 ~i~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
.+. +.+.++. ....++.-++++++..++.++..+++.
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999 8777754 344566666677777777777776653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=99.69 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=130.7
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIG 126 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~ 126 (485)
|..+..........+ ....++..-|++++.+|+|.+|...+.+...+|..+ +++.|.+.|++|+|.++.+|.+...+|
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344444443333333 233445567889999999999999999999999987 588999999999999999999999999
Q ss_pred HHHHHHh-------hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----
Q 011470 127 WLAISFA-------RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---- 195 (485)
Q Consensus 127 ~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---- 195 (485)
......+ .++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...+++..+-..+...+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 8887764 467888888899988888777777777778887 5799999999999999988876665544
Q ss_pred cchhHHHhhHHHHHHHHHHhhccCCch
Q 011470 196 PWRILAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 196 ~wr~~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
.-+..+..+..+.++.++...+++..|
T Consensus 159 ~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 159 PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 233444445555666555556665544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=113.40 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=114.8
Q ss_pred hhHHHHHhh-hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Q 011470 69 PTQTAITRD-LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARE-SSFLYMGRLLE 146 (485)
Q Consensus 69 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~r~l~ 146 (485)
...|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+.+++..+..+.++ .+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455666665 8999999999999999999999999999999999999999988888888888888774 88889999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
|++.+...+...+++.|..|+++|++..++.+....+|..++|.+++.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=109.30 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=116.1
Q ss_pred HHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
.......-.+........|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.....++..+....
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334445556788888888888766 44455577888999999999999999999998887777776665543
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.. ....++..++.+.+.+. ..+....++.|.+|+++|+++.+..+....++..++|.+.+.+.+
T Consensus 89 ~~---------------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 89 ET---------------SSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred Cc---------------HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 01122223333333322 233445888999999999999999999999999999999988776
Q ss_pred h-hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 445 W-SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 445 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
. +....+.+.+++..+..++.....+|++
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3 3334455666565666555556666654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=106.84 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=107.9
Q ss_pred hhHHHhHHH-HHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 298 NGVVFYSST-IFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 298 ~~~~~~~~~-~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
.....+.+. +.++.|.+... .......+...+..++.|+++||+|||+.+..+.....++.+.+....
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--------- 97 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--------- 97 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc---------
Confidence 344444444 44667887766 444444677777889999999999999999999888888777765431
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIY 454 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~ 454 (485)
..+...+..++.+.+.+ ...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.+....+.+.
T Consensus 98 ------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~ 170 (400)
T PRK11646 98 ------EPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATG 170 (400)
T ss_pred ------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 01222333333333333 23344457888999999999999999999999999999999999866555555555
Q ss_pred HHHHHHHHHHHHHhccc
Q 011470 455 TVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (485)
+....+..++.....++
T Consensus 171 ~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 55545444444445554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=108.84 Aligned_cols=171 Identities=13% Similarity=0.055 Sum_probs=117.8
Q ss_pred HHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 287 GLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
.+..+.............|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~ 88 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS 88 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333445566778888889988666 55566688899999999999999999999999988888877766543
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.. .+..++..++.+.+.+.. .+.....+.|.+|+++|+.+++.......++..++|.+.+.+.+
T Consensus 89 ~~---------------~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 89 SS---------------YLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred Cc---------------HHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 11 122233333444433332 23334678888999999999999999999999999999998887
Q ss_pred h-hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 445 W-SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 445 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
. +....+.+.+.+..+..+......||.+
T Consensus 153 ~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 153 EFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4 4444555555555555444555566643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=114.40 Aligned_cols=173 Identities=19% Similarity=0.165 Sum_probs=122.1
Q ss_pred HHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011470 285 GIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVA 362 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 362 (485)
.+.+..+.............|.+.++.|.+..+ .......++..++.++.|++.||+|||+.+..+..+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 333444444444556677788999999987665 556667888999999999999999999999998888877776665
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 363 VSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLL 442 (485)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~ 442 (485)
.... ....++..++.+.+.+ ...+....++.|.+|+++|+++.++......+|..++|.+.+++
T Consensus 86 ~~~~---------------~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 86 VAPN---------------LELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred CcCC---------------HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 4310 1222333333333333 33455568999999999999999999999999999999999999
Q ss_pred HH-hhcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 443 LN-WSGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 443 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
.+ .+..+.+++...+.++..++..+..++++
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 88 44445555555555555555555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=112.95 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred chhHHHHH-hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh--chhHHH-HHHHHHHHHHHHHHHH--hhhHHHHHH
Q 011470 68 SPTQTAIT-RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI--GRKGSL-MIAAIPNIIGWLAISF--ARESSFLYM 141 (485)
Q Consensus 68 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~-~~~~~l~~~~~~~~~~--~~~~~~~~~ 141 (485)
...+|.+. +++|.+..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.+...+ ..+.+...+
T Consensus 273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 34566655 45799999999999999999999999999999999 555432 2222333333333222 234444555
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH-HHHhhccc----cchhHHHhhHHHHHHHHHH
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIML-AYLLGLFV----PWRILAVLGILPCTILITG 214 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l----~wr~~f~~~~~~~~~~~~~ 214 (485)
..++.|.+..........+..|.+|+++||++.|+.+....+|..+ +|.+.+.+ ||+..|++.+...++.++.
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5555555443333334456789999999999999998877777554 67766555 8999998866655554333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=111.80 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 011470 79 ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVP 158 (485)
Q Consensus 79 ~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 158 (485)
+.+..+.|.+.+...+...++.++.|++.||+|||+.+.++..+.+++..+...++|.+.+++.++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666789999999999999999999999999999999999999998888878889999999999999999877766777
Q ss_pred HHHHhcCCCCcchhHHHH-HHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH
Q 011470 159 VYIAEIAPQNLRGALGSV-NQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI 210 (485)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~ 210 (485)
.++.+..+++.++...+. ++....+|..+++.+++++ ||+..|.+.++..++
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i 386 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLL 386 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHH
Confidence 778888888888776665 5677888888888777666 899998886555444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=107.78 Aligned_cols=157 Identities=11% Similarity=-0.035 Sum_probs=102.4
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
......+.|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+.+...++.++..... +
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---s----- 123 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS---S----- 123 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc---C-----
Confidence 444556677888889998776 334455677888999999999999999998887777776665554431 0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----h-----
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN----W----- 445 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~----~----- 445 (485)
.....+..++.+.+.+. ..+. ..++.|.+|+++|+.++|+.+...++|+.+++.+.+.+.+ .
T Consensus 124 -------~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 124 -------ATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred -------HHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 11222233333433332 2233 3567899999999999999998888888888777765543 1
Q ss_pred -hcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 446 -SGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 446 -~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
+....+.+.+++.++..++.+++.+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2334455555555555444444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=108.78 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=110.9
Q ss_pred hhhHHHhHH-HHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 297 INGVVFYSS-TIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 297 ~~~~~~~~~-~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
........| .+.++.|.+..+ .......+...++.++.|+++||+|||+.+..+.++.+++.++..+. .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~---- 84 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---SN---- 84 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---CC----
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---hh----
Confidence 344555556 666777887776 55556678889999999999999999999999988888884444422 11
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-WSGGGTFA 452 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~~~~~~~ 452 (485)
.+..++..++.+.+.+. ..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+ .+....+.
T Consensus 85 --------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~ 155 (352)
T PF07690_consen 85 --------FWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL 155 (352)
T ss_dssp --------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred --------HHHHhhhcccccccccc-ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence 12333444444444433 345555899999999999999999999999999999999999886 44445566
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 011470 453 IYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~ 470 (485)
+.+++.++..++...+.+
T Consensus 156 ~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHHHCCC-
T ss_pred cccchhhhhhhhHhhhhh
Confidence 666666666554334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=111.05 Aligned_cols=175 Identities=13% Similarity=0.068 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
+....+..+........+..-.|.+.+++|.+..+ +....+.++...+.+..|+++||+|||+.+..+..+..++.++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44555555555555666777789999999887655 5555667777888899999999999999999999888888877
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhcccc-CCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEI-LPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
...... .+..++.-.+.+.+.+.. .+.....+.+. .|+++|+++.|+......+|..++|.+.
T Consensus 88 ~~~a~~---------------~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 88 AAFSPT---------------ASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHcCC---------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765411 122334444445444433 23333444444 4779999999999999999999999999
Q ss_pred HHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 440 NLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 440 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
+.+.+. +..+.+++...++.+..++..+.+|+.+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999884 4445555555555555555556666543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=109.49 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
.+...+..+........+..+.|.+.++.|.++.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34444455555555666777899999999998766 4444556777889999999999999999988887777666655
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 440 (485)
.... .+ .+..++..++.+.+.+.. .+....++.|.+|+++|+++.|+.+....+|..++|.+.|
T Consensus 92 ~~~~---~~------------~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 92 CALS---GT------------LNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHh---CC------------HHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4432 10 122233334444444332 3445578889999999999999999999999999999999
Q ss_pred HHHHhhc-chhHHHHHHHHHHHHHHHHHhccc
Q 011470 441 LLLNWSG-GGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 441 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+.+..+ .+.+.+......+..+......++
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988444 344554444444444444444444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-10 Score=107.61 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
....+..+.............|.+.++.|.++.+ .......++..++.++.|+++||+|||+.+..+.+...++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 100 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3334444444444455566667777888988766 45556678889999999999999999999999988888887766
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
..... .+...+..++.+.+.+. ..+....++.|.+|+++|+++.++......+|..+++.+.+.
T Consensus 101 ~~~~~---------------~~~l~~~r~l~G~g~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 101 GLASG---------------VIMLTLSRFIVGMGMAG-EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHhH---------------HHHHHHHHHHHHHHHhh-HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 65421 12233334444444433 234445888999999999999999999999999999998888
Q ss_pred HHHhhcc
Q 011470 442 LLNWSGG 448 (485)
Q Consensus 442 ~~~~~~~ 448 (485)
+.+..++
T Consensus 165 l~~~~~w 171 (426)
T PRK12307 165 FAEAYGW 171 (426)
T ss_pred HcccCCH
Confidence 7774333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=108.23 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=131.8
Q ss_pred HHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchh--HHHHHHHHHHHHHHHHHHH--------hhhHHHHH
Q 011470 71 QTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRK--GSLMIAAIPNIIGWLAISF--------ARESSFLY 140 (485)
Q Consensus 71 ~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~l~~~~~~~~~~--------~~~~~~~~ 140 (485)
...-.+++|++..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+ .++.+.+.
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 4445668999999999999999999999999999999999999 9999999988776666666 67888999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHhhHHHHHHHHHHh
Q 011470 141 MGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVLGILPCTILITGL 215 (485)
Q Consensus 141 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~~~~~~~~~~~~~ 215 (485)
+.-++.|+..|...+...++.+|..|+++.+..+|++....-....+||++.+.+ +-|+.+....+..++.+++.
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988777 47787777666667766666
Q ss_pred hccCCc
Q 011470 216 FFIPES 221 (485)
Q Consensus 216 ~~~~e~ 221 (485)
++++.+
T Consensus 465 ~~v~~~ 470 (477)
T PF11700_consen 465 FFVDVE 470 (477)
T ss_pred hhccch
Confidence 666553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-09 Score=104.49 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=115.6
Q ss_pred HHHHHhhhCCCchhhhHHHH-HHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHH
Q 011470 71 QTAITRDLELTLSEFSLFAS-LSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI---SFA-RESSFLYMGRLL 145 (485)
Q Consensus 71 ~~~i~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~r~l 145 (485)
.|.+.+++|.+..+.++... ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44556789999999999974 6678999999999999999999998877666555544332 233 355555566677
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhccCCc
Q 011470 146 EGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFIPES 221 (485)
Q Consensus 146 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~~e~ 221 (485)
+.++.+...+...++..+..+++.+++..++.+...++|..+++.+.+.+ ||+..|.+.++..++.++....++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666766777788899999999999999999999999988776666655 89999988877777766655555543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=94.30 Aligned_cols=321 Identities=14% Similarity=0.102 Sum_probs=180.8
Q ss_pred hhHH-HHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 011470 85 FSLF-ASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAE 163 (485)
Q Consensus 85 ~~~~-~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 163 (485)
.|.. .++-+..+.+++++.+.+.|+.|+|..+.++........+..-+ +|-+.++.+-.+.|+|.+..+...-.+++|
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 3444 77888899999999999999999999999999998877766655 456668899999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------------cch-hHH-------------HhhHHHHHHHHHHhhc
Q 011470 164 IAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------------PWR-ILA-------------VLGILPCTILITGLFF 217 (485)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------------~wr-~~f-------------~~~~~~~~~~~~~~~~ 217 (485)
..+++++.+..++.......+.++|..+-..+ +-+ ..+ .+...+.++.++...+
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 99999999999998888888888886654333 111 111 1111111112222233
Q ss_pred cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHh-hcc
Q 011470 218 IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQ-LSG 296 (485)
Q Consensus 218 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 296 (485)
.|.+.. ...+ +. . +.......+..++.-..++ ++.+...++.. ...
T Consensus 210 ~p~~~~-~~~~----------------------------~~--~-~~~~~~~l~~~~~l~~~~~-ml~L~~~f~~tG~~~ 256 (461)
T KOG3098|consen 210 LPSKDV-VNCK----------------------------SS--S-ETSFSELLKLTFKLLKTPK-MLLLFPFFFYTGLET 256 (461)
T ss_pred cCccch-hhhh----------------------------hh--c-cccHHHHHHHHHHHhcCHh-HHHHHHHHHHHHHHH
Confidence 333210 0000 00 0 0011111122121111111 22222221111 111
Q ss_pred hhhHHHhHHHHHh--HcCCCchh---hHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 297 INGVVFYSSTIFE--SAGITSSD---VATLGLGALQVIATGVTTWLADK---AGRRALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 297 ~~~~~~~~~~~~~--~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
......+...+.- ..+.+... ......+++.+++....+.+.+| +|+++.+.++..+..+..++.-+.....
T Consensus 257 Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~d 336 (461)
T KOG3098|consen 257 SFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPND 336 (461)
T ss_pred HHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccccc
Confidence 1111222222221 12222222 33444567777777777777765 5778888877777666666655544333
Q ss_pred cccCC---CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 369 GFVSD---DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 369 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
.+..+ ....+...-....+..++++.+- ..+....+.++...+ ++.|..+.++.-.-..++..++-+..+.
T Consensus 337 ap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D-~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 337 APLRPTDSPPLLFTPSYYLALIIGFLLGFGD-ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred CCCCCCcccccccccchhHHHHHHHHHhhHH-HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 32111 11111111122333333333333 334455568888888 4778889988888887777766555544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=109.80 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=125.3
Q ss_pred chhHHHHH-hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011470 68 SPTQTAIT-RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLE 146 (485)
Q Consensus 68 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~ 146 (485)
...+|.+. +++|.++..+|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34577765 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI 210 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~ 210 (485)
|++.....+...+.+.+..|++.|||.++++.+....+..+|.++.+.+ |-+..+.++++..++
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877777777766665 777777775554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=104.15 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=107.2
Q ss_pred hHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 299 GVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
......|.+.++.|.++.+ .......++..++.++.|+++||+|||+.+..+.....++.+...... +
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~---~------- 95 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH---S------- 95 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc---c-------
Confidence 3344567788888988776 445566788899999999999999999999888777777666554321 0
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHH
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYT 455 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~ 455 (485)
.+..++..++.+.+.+. ..+....+..|.+++++++.+.+..+....++..++|.+.+.+.+. +....+.+.+
T Consensus 96 -----~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 96 -----LTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred -----HHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 11222333333333322 2233446778888889999999999999999999999999998874 4334455544
Q ss_pred HHHHHHHHHHHHhcccCC
Q 011470 456 VVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (485)
+...+..+...++.||++
T Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 170 LLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 444444444455566643
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.1e-10 Score=104.80 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=95.0
Q ss_pred HHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 011470 300 VVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSC 377 (485)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
.....+...++.+.++.. .......+...+..++.|+++||+|||+++..+..+..++.+.+.....
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~----------- 90 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH----------- 90 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-----------
Confidence 334445556777776554 4455567888999999999999999999999998887776665443210
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 378 YSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
. ++..++.+.+. ....|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+..
T Consensus 91 -----~--~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~ 151 (393)
T PRK11195 91 -----P--LLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH 151 (393)
T ss_pred -----H--HHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223333333 3445666699999999999999999999999999999999999999865
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=102.23 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=99.7
Q ss_pred HHHHHhhcchhhHHHhHHH-HHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSST-IFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
+..+..+........+.|. +.++.|.++.+ .......++..++.++.|+++||+|||+.+..+.++..++.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~ 87 (366)
T TIGR00886 8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA 87 (366)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333434445566677775 66788998776 55556678889999999999999999999999988888887776654
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 365 FFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.. ..+..++..++.+.+ +....+ ...++.|.+|+++|+.+.++......+|..+++.+.+.+.+
T Consensus 88 ~~--------------~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 88 VQ--------------SYSVLLLLRLFIGIA-GGSFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hh--------------hHHHHHHHHHHHHHh-chhhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 20 011222333333333 222333 44788999999999999999998888888888888776655
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=104.01 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
...+....+.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+.....++.+.......
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------- 100 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS-------- 100 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 344444566777888887665 4455667888899999999999999999998888777777666544311
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHH
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAI 453 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~ 453 (485)
.+..+...++.+.+.+. ..+.....+.|.+|+++|+++.++......++..++|.+.+.+.+. +....+.+
T Consensus 101 -------~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 101 -------IEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred -------HHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 11222223333333322 2344457888999999999999999888889999999999998884 44445555
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 011470 454 YTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (485)
.+++..+..+..+...||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 55555555554555566654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=105.21 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=107.3
Q ss_pred hHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 011470 303 YSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSI 380 (485)
Q Consensus 303 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (485)
-.|.+.++++.+... .....+.++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-------------- 103 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS-------------- 103 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence 345566677876655 4555567888899999999999999999999888777776666554311
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHH
Q 011470 381 LDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVVSA 459 (485)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~ 459 (485)
....++.-++.+.+.+. ..+..+.+..|.+|++++++++++.+....++..++|.+.+.+.+. +....+.+.++..+
T Consensus 104 -~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 104 -MTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181 (413)
T ss_pred -HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 12223333444443332 2344457888999999999999999999999999999999988875 44445555555555
Q ss_pred HHHHHHHHhcccCC
Q 011470 460 FTVAFVSIWVPETK 473 (485)
Q Consensus 460 ~~~~~~~~~~~~~~ 473 (485)
+..+..++..||++
T Consensus 182 i~~~~~~~~lp~~~ 195 (413)
T PRK15403 182 IAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHhCCCCc
Confidence 55444455567654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=103.10 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=100.8
Q ss_pred hcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 294 LSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKA-GRRALLIISSVGMTVSILIVAVSFFVKG 369 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (485)
...++.+..++|.++.+ .|+++.+ ...........++.+++|+++||+ |||+.+..+.++..++.+++.... ..
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--~~ 99 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--IH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh--cc
Confidence 33456666777777654 5887666 444455677788999999999999 999999999888888876554210 00
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 011470 370 FVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN--IKGLAGSVATLANWLTVWLITMTANLLLN-WS 446 (485)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~ 446 (485)
.....+...+...+.+. ..+...+++.|.+|++ +|.++.++.....++|+.++|.+.+++.+ .+
T Consensus 100 ------------~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G 166 (493)
T PRK15462 100 ------------PSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS 166 (493)
T ss_pred ------------hhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 01112222222233332 2344458899999876 69999999999999999999999999987 44
Q ss_pred cchhHHHHH
Q 011470 447 GGGTFAIYT 455 (485)
Q Consensus 447 ~~~~~~~~~ 455 (485)
....+...+
T Consensus 167 w~~~F~iaa 175 (493)
T PRK15462 167 WAMGFGLAA 175 (493)
T ss_pred hHHHHHHHH
Confidence 444454433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=107.94 Aligned_cols=177 Identities=10% Similarity=0.040 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
++...+.....+..........|.+.+ .|.++.+ .......++..++.++.|+++||+|||+.+..+.++.+++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 107 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL 107 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence 344444444433333334555666554 5887776 4555667888999999999999999999888887777776665
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 440 (485)
+........ ......+...+.+.+.+....+.. ..+.|.+|+++|++++|+.+....+|+.+++.+.+
T Consensus 108 ~~~~~~~~~-----------~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 108 MGFVPWATS-----------SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred Hhccccccc-----------hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 543211000 011222333344444444433343 77789999999999999999999999999998877
Q ss_pred HHHH-h-hcchhHHHHHHHHHHHHHHHHHhcccC
Q 011470 441 LLLN-W-SGGGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 441 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
...+ . +....+.+.+++.++..+..+++.||+
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6554 3 333445555555555555555666553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=109.33 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=149.4
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhc--hhHHHHHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIG--RKGSLMIAAIPNIIG 126 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~G--rr~~~~~~~~l~~~~ 126 (485)
..+..+++..+..+........+|...++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 344445555555666666777899999999999999999999999999999999999999998 566778888888999
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHH
Q 011470 127 WLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILA 201 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f 201 (485)
.+.+.++++++.+...-.+.|+..|........++.|..+.++-..+.|+.....+++.++||++++.+ +|...|
T Consensus 379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF 458 (509)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence 999999999999999999999999999888888999999999999999999999999999999999877 599999
Q ss_pred HhhHHHHHHHHHHhhccC
Q 011470 202 VLGILPCTILITGLFFIP 219 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~ 219 (485)
+..++..++....++..+
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 998777777666666665
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-09 Score=98.68 Aligned_cols=152 Identities=9% Similarity=-0.037 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHhHHHHHh-HcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 011470 280 FPLTVGIGLLILQQLSGINGVVFYSSTIFE-SAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTV 356 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 356 (485)
++.++...+.+...+..........+.+.+ +++++..+ .......+.+.+.++..|++.||+|.|+.+.++..+..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344555555555554445555555555554 68888877 444456777888899999999999999999988888777
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHH
Q 011470 357 SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
..+.+......... .....++..++.+.+ +..+ +.....+++.+|+++||++.|+.....++|..+++
T Consensus 113 ~~~~~~~a~~~~~~----------s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 113 PCVWLGIAVQNPNT----------PFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHcccCC----------CHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 77666543110000 011223333333333 3333 34458899999999999999999777777777666
Q ss_pred HHHHHHH
Q 011470 437 MTANLLL 443 (485)
Q Consensus 437 ~i~g~~~ 443 (485)
++.+.+.
T Consensus 181 ~l~p~~i 187 (462)
T PRK15034 181 LVAPLVI 187 (462)
T ss_pred HHHHHHH
Confidence 6655433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=105.47 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=106.5
Q ss_pred chhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh----hhchhHHHHH-HHHHHHHHHHHHHHhhhHH-----
Q 011470 68 SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE----YIGRKGSLMI-AAIPNIIGWLAISFARESS----- 137 (485)
Q Consensus 68 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~-~~~l~~~~~~~~~~~~~~~----- 137 (485)
-...+++.+++|++....+.+--+..+...+.+|+.|..+| ||||||.++. +....+++.++.+++.++.
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 34567788899999999999999999999999999999999 6898777665 5555667778888876543
Q ss_pred ------------HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchh-HHHHHHHHHHHHHHHHHHhhccccch
Q 011470 138 ------------FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGA-LGSVNQLSVTIGIMLAYLLGLFVPWR 198 (485)
Q Consensus 138 ------------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~l~wr 198 (485)
.++++--+.-+..-.....+-+++.|...++++.+ +++.+....++|..+|..++.+.+|+
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 34444555556666788889999999998776666 99999999999999999999988877
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-10 Score=104.82 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=108.5
Q ss_pred hHHHHHhhhCCCchhhhHHHHHHH-HHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH------hhhHHHHHHH
Q 011470 70 TQTAITRDLELTLSEFSLFASLSN-VGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF------ARESSFLYMG 142 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~ 142 (485)
..+.+.+|.|.++++.|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 345556678999999999988876 466778899999999999999998877766433332221 1233344555
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCC-CcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHH
Q 011470 143 RLLEGFGVGIISYTVPVYIAEIAPQ-NLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILI 212 (485)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~ 212 (485)
..+.+++.+...+...+...+..++ +++++.+++.+...++|..++|.+++.+ ||+..|++.++..++..
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 5667777788888888888788776 7889999999999999999999998766 78888888666555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-09 Score=100.72 Aligned_cols=176 Identities=19% Similarity=0.116 Sum_probs=122.9
Q ss_pred hHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 011470 44 ISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPN 123 (485)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~ 123 (485)
|+...+.+.+.++.-+.+ .+.....-..+-++-|++..+..+..........++.+++..+.||+|||+.++.+..+.
T Consensus 268 R~~~~i~~~v~~~qq~sG--i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSG--INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred hHHHHHHHHHHHHHHhcC--cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 333333334444433232 333444556788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---hHH------HHHHHHHHHhhhhhh-hhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH----
Q 011470 124 IIGWLAISFAR---ESS------FLYMGRLLEGFGVGI-ISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAY---- 189 (485)
Q Consensus 124 ~~~~~~~~~~~---~~~------~~~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~---- 189 (485)
.+..+++.... +.. ..+++.++..++.+. .-|...-+.+|.+|++.|+.+.++.....-+..++-.
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777642 211 123444444444333 3578888999999999999999988777776665543
Q ss_pred HhhccccchhHHHhhHHH-HHHHHHHhhccCCch
Q 011470 190 LLGLFVPWRILAVLGILP-CTILITGLFFIPESP 222 (485)
Q Consensus 190 ~~~~~l~wr~~f~~~~~~-~~~~~~~~~~~~e~p 222 (485)
.+...+|= +.|+.-+++ .+..+..++.+||+.
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 33344343 555554444 445778888999984
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=104.62 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHhH---cCCCchh--hHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFES---AGITSSD--VATLGLGALQVIATGVTTWLADK-AGRRALLIISSVGMTVS 357 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~ 357 (485)
+.+.+..+....+++....+++.|+++ .|.+..+ .......+...++.+++|+++|| +|||+.+..+.++.+++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g 92 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 334444444444566777778888765 6777665 45556678889999999999999 89999999999988888
Q ss_pred HHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccc---hhhHHHHHHHHHHHHHHH
Q 011470 358 ILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINI---KGLAGSVATLANWLTVWL 434 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~ 434 (485)
.+++..... .+...+...+.+.+.+. ..+...+.+.|.+|+++ |+++.++.+...++|..+
T Consensus 93 ~~~~~~~~~---------------~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 93 HFMLAMSIY---------------PDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHhccc---------------HhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence 777664310 11222333333333332 33455578888888754 888999999999999999
Q ss_pred HHHHHHHHHHh-hcchhHHHHHH
Q 011470 435 ITMTANLLLNW-SGGGTFAIYTV 456 (485)
Q Consensus 435 ~~~i~g~~~~~-~~~~~~~~~~~ 456 (485)
+|.+.+.+.+. +....+...++
T Consensus 157 g~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 157 SPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred HHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999884 44444544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-10 Score=102.41 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=104.2
Q ss_pred hHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 299 GVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
.+.+++-..+++.+..+.- ...+..-.+.++.-++.+++.+|+|+-+++..+..+..+-++.+...
T Consensus 389 lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------------ 456 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------------ 456 (618)
T ss_pred HHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------------
Confidence 3344444456666533322 33344456678888899999999999999988877776666555543
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHH-hhcchhHHHH
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT-LANWLTVWLITMTANLLLN-WSGGGTFAIY 454 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~i~g~~~~-~~~~~~~~~~ 454 (485)
+.+|.++..-++-+...+..+..+. +|++...||+.+.++.++.. ....+|-.+|++++|.+.+ .+....+.++
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIF 532 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHH
Confidence 2334555555566666666666666 99999999999999999985 4567888899999999888 4555556666
Q ss_pred HHHHHHHHHHH
Q 011470 455 TVVSAFTVAFV 465 (485)
Q Consensus 455 ~~~~~~~~~~~ 465 (485)
++.+++..++.
T Consensus 533 giAcl~~l~~~ 543 (618)
T KOG3762|consen 533 GIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=106.06 Aligned_cols=153 Identities=11% Similarity=-0.021 Sum_probs=98.5
Q ss_pred hhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH--H--hhhHHHHHHHH
Q 011470 69 PTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS--F--ARESSFLYMGR 143 (485)
Q Consensus 69 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~r 143 (485)
..+|. +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++...... . .++....+..-
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555 4567899999999999998888899999999999999999988776665443332221 1 12233222222
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHH-HHHHHHHhhccc---c-chhHHHhhHHHHHHHHHHhhcc
Q 011470 144 LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTI-GIMLAYLLGLFV---P-WRILAVLGILPCTILITGLFFI 218 (485)
Q Consensus 144 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l---~-wr~~f~~~~~~~~~~~~~~~~~ 218 (485)
.+.+++.+...+....++.|++|++.|+.+.|+.+....+ .....|.+...+ + |...++..++..++..+..+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3233334444455677889999999999999998765443 233356655544 4 5555665555555554444455
Q ss_pred CCc
Q 011470 219 PES 221 (485)
Q Consensus 219 ~e~ 221 (485)
+++
T Consensus 424 ~~~ 426 (432)
T PRK10406 424 HRK 426 (432)
T ss_pred hhc
Confidence 443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=112.13 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 011470 88 FASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARES--SFLYMGRLLEGFGVGIISYTVPVYIAEIA 165 (485)
Q Consensus 88 ~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (485)
......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344566777888999999999999999999999999988888877654 55556667777888888888999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhccc--cchhHHHhhHHHHHHHHHHhhccCCch
Q 011470 166 PQNLRGALGSVNQLSVTIGIMLAYLLGLFV--PWRILAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--~wr~~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
|++.|+.++++.+....+|.+++|.+.+.. ++...+++.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988722 455666665555555555667788864
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=103.62 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=111.6
Q ss_pred HHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 011470 300 VVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSC 377 (485)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
.....|.+.++.|.++.+ .......++..++.++.|++.||+|||+.+..+.++..++...+.....
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~----------- 78 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT----------- 78 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc-----------
Confidence 344567777888888766 4455667888999999999999999999999888888777776654311
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHH
Q 011470 378 YSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTV 456 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~ 456 (485)
.+...+..++.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. +....+.+.+.
T Consensus 79 ----~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 79 ----IDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred ----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 11223333333433332 2344458889999999999999999999999999999999998884 43344555555
Q ss_pred HHHHHHHHHHHhcccC
Q 011470 457 VSAFTVAFVSIWVPET 472 (485)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (485)
+..+..+......+|+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 5555555555556654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-10 Score=108.76 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=101.2
Q ss_pred hHHHHHhhhCCCchhhhH------------HHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhh--
Q 011470 70 TQTAITRDLELTLSEFSL------------FASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARE-- 135 (485)
Q Consensus 70 ~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~-- 135 (485)
..|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777788876543221 233445566678889999999999999999988888777766665421
Q ss_pred --HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc--------------cchh
Q 011470 136 --SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--------------PWRI 199 (485)
Q Consensus 136 --~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------~wr~ 199 (485)
...+...-+...++.....+....+..|.+|.+.|+++.++.+....+|.+++|.+.+.+ ++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 111111111112222233456677789999999999999999999999999988776544 1244
Q ss_pred HHHhhHHHHHHHHHHhhccCCch
Q 011470 200 LAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
.|++.++..++..+..+++||+.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 56665555454444556779874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-10 Score=107.43 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=98.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhhhhhhhHHH
Q 011470 81 TLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA-RESSFLYMGRLLEGFGVGIISYTVPV 159 (485)
Q Consensus 81 s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~ 159 (485)
+..+.+++.+...++..++.+++++++||+|+|+++.++..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888899999999999999999999999999998888888777665 46677788889999999999999999
Q ss_pred HHHhcCC-------CCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 160 YIAEIAP-------QNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 160 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45579999999999999999988877655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-10 Score=106.45 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=96.7
Q ss_pred hhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhch-hHHHH-HHH-HHHHHHHHHHHH--hhhHHHHHHH
Q 011470 69 PTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGR-KGSLM-IAA-IPNIIGWLAISF--ARESSFLYMG 142 (485)
Q Consensus 69 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~-~~~-~l~~~~~~~~~~--~~~~~~~~~~ 142 (485)
...|. +.+++|.+..+.++..+.+.++..++.++.|+++||.++ |+... ... ....++...... ..+.+...+.
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (379)
T TIGR00881 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC 316 (379)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 34444 456789999999999999999999999999999998643 33222 221 112222222222 3455566677
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHH
Q 011470 143 RLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILA 201 (485)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f 201 (485)
.++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 77888766666667778899999999999999999999999999998887666 777653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=99.57 Aligned_cols=160 Identities=12% Similarity=0.010 Sum_probs=106.6
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
+..+....|.+.+++|.+..+ .......++..++.+..|+++||+|||+.+.........+....... .+
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~~----- 78 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP---FN----- 78 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh---cc-----
Confidence 344556778888899998777 44445578888999999999999999887654433333322111110 01
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHH
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGG-TFAI 453 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~-~~~~ 453 (485)
....++.-++.+.+.+. .........|.+|+++|++++++.+....+|..+++.+.+.+.+..++. .+..
T Consensus 79 -------~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 79 -------YEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred -------HHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 12333444444444432 2223355688899999999999999999999999999999988744443 4555
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 011470 454 YTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (485)
.+++.++..++.++.+||.+
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 56666666666677777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-09 Score=100.16 Aligned_cols=147 Identities=14% Similarity=-0.002 Sum_probs=98.5
Q ss_pred hHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 011470 303 YSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSI 380 (485)
Q Consensus 303 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (485)
..|.+.++.+.++.+ .......++..++.++.|+++||+|||+.+..+.....++.++......
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------- 93 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES-------------- 93 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence 345556778887766 4455667888899999999999999999998887777766665544210
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Q 011470 381 LDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGG-GTFAIYTVVSA 459 (485)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~-~~~~~~~~~~~ 459 (485)
.+..++..++.+.+.+.. .+.....+.|.+|+++++...+..+....++..++|.+.+.+.+..++ ..+....++.+
T Consensus 94 -~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 94 -AAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL 171 (401)
T ss_pred -HHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 112222223333332222 223346788999999899999999888999999999999999884333 34555544444
Q ss_pred HHHHHH
Q 011470 460 FTVAFV 465 (485)
Q Consensus 460 ~~~~~~ 465 (485)
+..+..
T Consensus 172 ~~~~~~ 177 (401)
T PRK11043 172 LLILPT 177 (401)
T ss_pred HHHHHH
Confidence 444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=104.30 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=92.3
Q ss_pred cchhHHHHHh-hhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHH-HH---HhhhHHHHHH
Q 011470 67 SSPTQTAITR-DLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLA-IS---FARESSFLYM 141 (485)
Q Consensus 67 ~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~-~~---~~~~~~~~~~ 141 (485)
.....|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||+++..+.++..+.... .. ..+++....+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3445666554 48999999999999999999999999999999999999988765544332221 11 1234444445
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHhhccc
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQ-LSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l 195 (485)
..++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+.+.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 5666677777777777788999999999999999854 34444456677666544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-09 Score=98.81 Aligned_cols=135 Identities=7% Similarity=-0.041 Sum_probs=100.6
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDD 374 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
........|.+.++.|.+..+ .......++..++++..|++.||+|||+.+..+..+.+++.+++.......+
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~----- 93 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN----- 93 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 344456778888888998766 5555668889999999999999999999999999988888776543321111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 375 SSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.+..+...++.+.+.+....+.. .++.+..|++++++..++.+....+|..++|.+.+.+..
T Consensus 94 -------~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 94 -------YTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred -------HHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12334444455555554444444 777788899999999999999999999999999988753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-10 Score=104.82 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=97.5
Q ss_pred chhHHHHHhhhCCCchhhhHHHHHHH-HHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-----------hh
Q 011470 68 SPTQTAITRDLELTLSEFSLFASLSN-VGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA-----------RE 135 (485)
Q Consensus 68 ~~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----------~~ 135 (485)
....|.+.+++|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++
T Consensus 229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 34566666669999999998888766 6788999999999999999999998888888777765553 45
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVT 182 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (485)
.+.+....++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 67788889999999999999999999999999999999999887654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-09 Score=101.98 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=104.5
Q ss_pred hhcchhhHHHhHHHHH-hHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 293 QLSGINGVVFYSSTIF-ESAGITSSD--VATLGLGALQVIATGVTTWLADK-AGRRALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
.-..++....+++.|+ ++.|.+... .....+.....+..+++|+++|| +|||+.+..+.++..++.+.+.+....
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~- 104 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK- 104 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 3334555555555554 457877665 33333455566667799999999 999999999999999988777654210
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN--IKGLAGSVATLANWLTVWLITMTANLLLNWS 446 (485)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~ 446 (485)
.....+...+.+.+.+. ..|...+++.|.+|++ +|+.+.++.....++|..++|.+.|++.+..
T Consensus 105 -------------~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~ 170 (489)
T PRK10207 105 -------------PDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF 170 (489)
T ss_pred -------------hhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01122333333333333 3345558999999877 4577899999999999999999999998844
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcc
Q 011470 447 GGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
++...+....+..+..++.+...+
T Consensus 171 gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 171 GYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcc
Confidence 443333333333443343343333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=96.96 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=100.3
Q ss_pred hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhH
Q 011470 78 LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTV 157 (485)
Q Consensus 78 ~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 157 (485)
+|.++.+.++..+.+..+..++.+..+++.||+|+||++.++..+..++.++....++... ...-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999998888888887766666554433 345568899999999999
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhH
Q 011470 158 PVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGI 205 (485)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~ 205 (485)
.+...+..|++ .+.+.++. ....+|.++.|.+.+.+ |.+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 99999988754 45666665 45668888888866655 6677776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=99.32 Aligned_cols=174 Identities=21% Similarity=0.161 Sum_probs=139.7
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIG 126 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~ 126 (485)
-...++..-..+.++.+.. ++..-..-.+++|++..+..++.-...+..+++++++|+|.||+|.|+++..++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~ti-l~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTI-LAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 3334444444444444432 112222334599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHH
Q 011470 127 WLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILA 201 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f 201 (485)
++..-+...-..+.++-.+.|...|.....+.++..+..|++|-++.+|+++...-.+..+||.+-+.+ +-|.-+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 998888877777788889999999999999999999999999999999999999999999999887766 466666
Q ss_pred HhhHHHHHHHHHHhhccCCc
Q 011470 202 VLGILPCTILITGLFFIPES 221 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~ 221 (485)
....+...+.++..+.+|++
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 66555566666667777764
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=103.73 Aligned_cols=147 Identities=13% Similarity=0.133 Sum_probs=100.3
Q ss_pred HHHHhhhCCCchhhhHHHHHH-HHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHH---
Q 011470 72 TAITRDLELTLSEFSLFASLS-NVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI---SFA-RESSFLYMGR--- 143 (485)
Q Consensus 72 ~~i~~~~~~s~~~~~~~~s~~-~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~r--- 143 (485)
+.+.+++|.++.+.+++.+.. ..+..++.++.|++.||+|+|+.+.++..+..+..+.. ++. ++.+.+.+.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 457778999999999998665 45689999999999999999998887777666554433 343 4556555544
Q ss_pred -HHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHhhcc
Q 011470 144 -LLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTILITGLFFI 218 (485)
Q Consensus 144 -~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~wr~~f~~~~~~~~~~~~~~~~~ 218 (485)
+..|++.+...+....++.+.+|.++++...++...+..++..++..+....||+..|.+.++..++.++.....
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777788888876665544444333333333344444455599999999877776655554333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=104.24 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 011470 282 LTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSIL 359 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 359 (485)
....+.+....+..-.+.+....+...+.++.++.. +......+...+.+++.|++.||+.|++++.+|..+..++.+
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 344555555666555666666666666667777665 777778899999999999999999999999999888888887
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 360 IVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
...+.. ..|..++.-.+.+.+-+ .+.|+..++++|.+|.++|++++++.+.....|..+|-.+.
T Consensus 114 ~~~fs~---------------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg 177 (493)
T KOG1330|consen 114 ASGFSN---------------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG 177 (493)
T ss_pred HHHHHH---------------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee
Confidence 777652 12445555555666554 45566669999999999999999999999999999988888
Q ss_pred HHHHHhh--cchhHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 011470 440 NLLLNWS--GGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEE 479 (485)
Q Consensus 440 g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (485)
+.+.+.. ..+.+...+++.++..++..++.+|+.++..++
T Consensus 178 s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 178 SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred eeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 8777743 344577777788888888888888776544333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=100.14 Aligned_cols=126 Identities=15% Similarity=0.105 Sum_probs=101.5
Q ss_pred hhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 011470 69 PTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEG 147 (485)
Q Consensus 69 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G 147 (485)
..+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-++.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 456777778899999999999999999999999999999999 567777788888888877777765433322 457889
Q ss_pred hhhhhhhhhHHHHHHhcCC-CCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 148 FGVGIISYTVPVYIAEIAP-QNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887776555 45678888988888888888888877665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-06 Score=80.37 Aligned_cols=127 Identities=7% Similarity=0.025 Sum_probs=99.3
Q ss_pred hhHHHHHhhhCCC-----chhhhHHHHHHHHHHHHH-HHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh----h----
Q 011470 69 PTQTAITRDLELT-----LSEFSLFASLSNVGAMVG-AITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA----R---- 134 (485)
Q Consensus 69 ~~~~~i~~~~~~s-----~~~~~~~~s~~~~~~~i~-~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----~---- 134 (485)
.++-+++|.+.++ ...+.++-+...+..++. .++.+++++|++|++++-+....+....+++++. +
T Consensus 24 ~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~ 103 (472)
T TIGR00769 24 TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLH 103 (472)
T ss_pred HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcC
Confidence 3566788887663 357889988887777776 8999999999999999998888888777776665 1
Q ss_pred -----------------------hHHHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 135 -----------------------ESSFLYMGRLLEGFGVGIISY-TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 135 -----------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
+.|...+..+...+-...... .-..+..|.++.+|-.|..++.+.+.++|.++++.
T Consensus 104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~ 183 (472)
T TIGR00769 104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR 183 (472)
T ss_pred CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444555566665556655 77889999999999999999999999999999997
Q ss_pred hhccc
Q 011470 191 LGLFV 195 (485)
Q Consensus 191 ~~~~l 195 (485)
+..++
T Consensus 184 ~~~~~ 188 (472)
T TIGR00769 184 TIKYF 188 (472)
T ss_pred HHHHH
Confidence 76654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.3e-09 Score=94.35 Aligned_cols=174 Identities=16% Similarity=0.051 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILI 360 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 360 (485)
++...+.+...++.........+.+.++.++|+.+ +...+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 33344444444444555555666666888999888 4444557888999999999999999999999998888888777
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011470 361 VAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g 440 (485)
+.+.....+. +..++. ....+.+.+.-.+...++++.||+|++|.++|+.. .+++|..+..++.+
T Consensus 96 ~~~a~~~~~~------------~~ll~~--gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 96 LAFAVTYPST------------WQLLVI--GLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred HHHHccCCch------------HHHHHH--HHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 7766433221 111222 22222333333444589999999999999999999 89999999999988
Q ss_pred HHHHhhc----chhHHHHHHHHHHHHHHHHHhccc
Q 011470 441 LLLNWSG----GGTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 441 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+....+ .....++....++..+..++..++
T Consensus 161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8887433 334455555555556666666554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=99.42 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=96.8
Q ss_pred HHHHHhhcchhhHHHhHHHHH-hHcCCCchhh--HHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIF-ESAGITSSDV--ATLGLGALQVIATGVTTWLADK-AGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
...+.....++....+.+.++ ++.|.+..+. .............+++|+++|| +|||+.+..+.++..++..++..
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 333334444556666666666 5678876652 2222233334445689999999 59999999998888887766654
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINI--KGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
... ......+...+.+.+.+. ..+...++..|.+|++. ++.+.++.+...++|..++|.+.|+
T Consensus 108 ~~~--------------~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 108 SGH--------------DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred hcc--------------cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 210 011222333334444333 33444578899987643 4567888899999999999999999
Q ss_pred HHHh-hcchhHHHHH
Q 011470 442 LLNW-SGGGTFAIYT 455 (485)
Q Consensus 442 ~~~~-~~~~~~~~~~ 455 (485)
+.+. +....+.+.+
T Consensus 173 l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 173 LAAKYGWSVAFALSV 187 (500)
T ss_pred HHHhhCHHHHHHHHH
Confidence 9884 4444444433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-09 Score=103.46 Aligned_cols=147 Identities=12% Similarity=-0.025 Sum_probs=100.6
Q ss_pred cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHH
Q 011470 311 AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIG 388 (485)
Q Consensus 311 ~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (485)
.+.+..+ .......++..++.++.|++.||+|+|+.+..+.++..++.++........ ....++.
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~ 137 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG-------------IALVVFC 137 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC-------------chHHHHH
Confidence 4455444 455566788999999999999999999999888877776665544321100 0122333
Q ss_pred HHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHH
Q 011470 389 VVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW--SGGGTFAIYTVVSAFTVAFVS 466 (485)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 466 (485)
-++.+.+.+. ..+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+. +....+.+.++..++..++.+
T Consensus 138 r~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQGS-VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhccc-chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 3344444333 3445558999999999999999999999999999999999998885 444455555555555544444
Q ss_pred Hhccc
Q 011470 467 IWVPE 471 (485)
Q Consensus 467 ~~~~~ 471 (485)
.+.++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=99.04 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=116.9
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 011470 79 ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVP 158 (485)
Q Consensus 79 ~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 158 (485)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcchhHHHHH-HHHHHHHHHHHHHhhccc----cchhHHHh-hHHHHHHHHHHhhccCCc
Q 011470 159 VYIAEIAPQNLRGALGSVN-QLSVTIGIMLAYLLGLFV----PWRILAVL-GILPCTILITGLFFIPES 221 (485)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l----~wr~~f~~-~~~~~~~~~~~~~~~~e~ 221 (485)
.++++.+|+|-.++...+. +.+.++|.++.+.+++.+ |.+..|++ +++.....++..+.++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999988877777664 677888888877777766 78888877 444444466666666554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-07 Score=93.79 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=119.0
Q ss_pred chhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhhh--------HHH
Q 011470 68 SPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIAAIPNIIGWLAISFARE--------SSF 138 (485)
Q Consensus 68 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~--------~~~ 138 (485)
......+.+.+|.+.++...+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 344556677899999999999999999999999999999995 59999999999999999988877521 234
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCCCc---chhHHHHHHHHHHHHHHHHHHhhccc-----------cchhHHHhh
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAPQNL---RGALGSVNQLSVTIGIMLAYLLGLFV-----------PWRILAVLG 204 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l-----------~wr~~f~~~ 204 (485)
.+++-.+..+|.|+.-|...+...|.+++++ |.....++..+.++|.++++.+..++ +|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 6677888899999999999999999997643 56788888999999999887765444 488888887
Q ss_pred HHHHHHHHHHh
Q 011470 205 ILPCTILITGL 215 (485)
Q Consensus 205 ~~~~~~~~~~~ 215 (485)
++..++.++..
T Consensus 168 ~i~m~ia~lvf 178 (654)
T TIGR00926 168 AILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHH
Confidence 66665544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=117.24 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=112.2
Q ss_pred HHHHhhhCCCch-hhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Q 011470 72 TAITRDLELTLS-EFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGV 150 (485)
Q Consensus 72 ~~i~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 150 (485)
+.+.+++|.+.. +.+++.+...++..++.++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345677899998 9999999999999999999999999999999999999989888888888889999999999999999
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 151 GIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
+...+...+++.+..|+++|++++++.+....+|.++++.++..+
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887777766554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-08 Score=91.89 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=115.8
Q ss_pred hhhHHHhHHHHHhHcCCCchh---hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 297 INGVVFYSSTIFESAGITSSD---VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
-....+..|++.++.|++..+ .....+..+..+..+.+|+++||+|.|+.+..+.+...+..+++++...
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S------- 114 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS------- 114 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345566778888889998777 4455567888999999999999999999999998888888887776421
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGG--TF 451 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~--~~ 451 (485)
.....+.-++++.+-+..+ ..+.++...+|+++|+++.|+.+....+|.++++.+.+.+...+... ..
T Consensus 115 --------l~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~L 184 (511)
T TIGR00806 115 --------VWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTL 184 (511)
T ss_pred --------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 1234455556666666555 44589999999999999999999999999999999999955433221 22
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 011470 452 AIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~ 472 (485)
..+.......+++..+++|..
T Consensus 185 n~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 185 NIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 233344444444555566633
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=83.13 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Q 011470 323 LGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGP 402 (485)
Q Consensus 323 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (485)
..++.+++.++.+++.||++||+.+..+.....++.+...... + .+.......+.+.+.+. ..+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~g~~~~~-~~~ 70 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS---N------------ITVLIIARFLQGFGAAF-ALV 70 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc---c------------HHHHHHHHHHHHHHHHH-HHH
Confidence 4567788999999999999999998888777776665554321 0 12222333333433332 234
Q ss_pred chhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhccc
Q 011470 403 IPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGG-GTFAIYTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..++ ..+........+..+..+...||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5558899999999999999999999999999999999999885433 44555555555555555544443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.7e-08 Score=95.62 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=103.1
Q ss_pred hhhHHHhHHHHHhHcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 011470 297 INGVVFYSSTIFESAGITSSDVATLG-LGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDS 375 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
.+.+..+.+.+.+++|++..+..... .+.......++.|++.||+|+|+++.++.+...++.++.++.......
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~----- 117 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIE----- 117 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence 45566778888888899877733322 122233456678999999999999999999999998887764221000
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011470 376 SCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYT 455 (485)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~ 455 (485)
...+...+...+.+.+.+... +.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+
T Consensus 118 ----~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 118 ----GSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 011122222223333322222 223356677887 78999999999999999986555554444433344566666
Q ss_pred HHHHHHHHHHHHhcccC
Q 011470 456 VVSAFTVAFVSIWVPET 472 (485)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (485)
++..+..++.+.+++.+
T Consensus 192 vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 192 SFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHhheeCC
Confidence 66666666666655543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=95.39 Aligned_cols=161 Identities=20% Similarity=0.318 Sum_probs=124.3
Q ss_pred cccccccchhHHHHHhhhC-CCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh-hhHHH
Q 011470 61 GFTCGYSSPTQTAITRDLE-LTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA-RESSF 138 (485)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~ 138 (485)
+.....+....+..-+|.| .+....+.+.++..++=...-.+.+++..|+|.|+++.++.+..++=..+.+.. ++.+.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 4444445556666777777 677778888888888888999999999999999999999999999988888877 55444
Q ss_pred HHH----HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHH-HHHHHHHHHHHhhccc----c------chhHHHh
Q 011470 139 LYM----GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL-SVTIGIMLAYLLGLFV----P------WRILAVL 203 (485)
Q Consensus 139 ~~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l----~------wr~~f~~ 203 (485)
..+ ...++|+..+..+.....++.+..|++.|+++.+++.. ..++|..+|..+++++ + |...+.+
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 333 34579999999999999999999999999999999876 4689999999998877 2 4445555
Q ss_pred hHHHHHH-HHHHhhccCCc
Q 011470 204 GILPCTI-LITGLFFIPES 221 (485)
Q Consensus 204 ~~~~~~~-~~~~~~~~~e~ 221 (485)
.+...++ .++.+++.+|+
T Consensus 380 ~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 380 FAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHhhccCC
Confidence 4444444 44444555553
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-08 Score=94.09 Aligned_cols=143 Identities=9% Similarity=-0.035 Sum_probs=101.3
Q ss_pred HHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 011470 288 LLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSF 365 (485)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (485)
+.++.............|.+.++++.++.+ .......++..++.++.|++.||+|||+.+..+..+.+++.+++....
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334566677788888888998776 555667889999999999999999999999999998888886653221
Q ss_pred HhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 366 FVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
...+ ....++..++.+.+.+....... .++.|..|+++++..+++.+....+|..++|.+.+.+.
T Consensus 113 ~a~~------------~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 EIMN------------YTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hcCC------------HHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12334445555555555444444 66678766666666899999999999999999877654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.9e-09 Score=99.76 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=97.8
Q ss_pred HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhh
Q 011470 75 TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ESSFLYMGRLLEGFGVGI 152 (485)
Q Consensus 75 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~ 152 (485)
++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 344676655555555555677888999999999999999999999999888888777753 677777888899999999
Q ss_pred hhhhHHHHHHhcCCCC-------cchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 153 ISYTVPVYIAEIAPQN-------LRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 153 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
..+...++..|..|.+ ++|...++.+....+|..+++.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 358889999999999999988776543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-06 Score=78.74 Aligned_cols=370 Identities=14% Similarity=0.037 Sum_probs=177.2
Q ss_pred hhhhccccccccccchhHHHHHhhhCC-CchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 011470 54 ALGPIQFGFTCGYSSPTQTAITRDLEL-TLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF 132 (485)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 132 (485)
..+.++...+.-+.....+.+..+..- +---.+...-.-.+...++++..|.+.||..|.+++..+++..-++..+.+.
T Consensus 8 y~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~ 87 (432)
T PF06963_consen 8 YLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333444444444555556655555532 2222344444446677788899999999999999888777664333222221
Q ss_pred ------hh------hHHHH---HHHHHHHhhhhhhh-hhhHHHHHHhcC------CCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 133 ------AR------ESSFL---YMGRLLEGFGVGII-SYTVPVYIAEIA------PQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 133 ------~~------~~~~~---~~~r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
.. +-+.. ++.-.+.|.-.-.. .....+.=.||. +++++.+..+...-.--+..+++|+
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl 167 (432)
T PF06963_consen 88 LFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL 167 (432)
T ss_pred HHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01222 22222222211111 111122224553 2333455566655555566777777
Q ss_pred hhccc----cchhHHHhhHHHHHHHH-HHhhc----cCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Q 011470 191 LGLFV----PWRILAVLGILPCTILI-TGLFF----IPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVAS 261 (485)
Q Consensus 191 ~~~~l----~wr~~f~~~~~~~~~~~-~~~~~----~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (485)
+.+.+ +.+...++.+...++.+ +=+++ ....|+ +..+++.++.....+.... ..........+...+
T Consensus 168 ~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 243 (432)
T PF06963_consen 168 FVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESS---SESSSDPSILKRLWN 243 (432)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccccc---ccccchhhHHHHHHH
Confidence 77665 44444333332222211 11111 122232 2222111110000000000 000000000000011
Q ss_pred ccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Q 011470 262 SSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLAD 339 (485)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d 339 (485)
.-......|+..++.+.+.+.+-. .+.++. ...+......|....|+++.. ..-....+.++.++++..++.+
T Consensus 244 ~~~~~~~~w~~Y~~q~vflas~al-alLY~T----VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ 318 (432)
T PF06963_consen 244 PLRTIIRGWRTYFRQPVFLASFAL-ALLYFT----VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMK 318 (432)
T ss_pred HHHHHhccHHHHHhCHHHHHHHHH-HHHHHH----HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123345555555543332222 222222 223344556667777998776 4445667889999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh
Q 011470 340 KAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL 419 (485)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (485)
|+|..+.-.++......+..+.......... +.........+.+..+.-.+.- ++-.....++.|..|+++||+
T Consensus 319 riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~-----~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 319 RIGLVRAGLWSLWWQWVCLALCVVSFWAPGS-----PFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhH
Confidence 9998888777776665555444444333321 0000111122222222222221 222333478889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011470 420 AGSVATLANWLTVWLITMT 438 (485)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~i 438 (485)
..|+-+..+++...+.-.+
T Consensus 393 v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 393 VSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888877654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=92.84 Aligned_cols=148 Identities=25% Similarity=0.396 Sum_probs=123.3
Q ss_pred ccccccchhHHHHHhhhCCCc--hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhh--HH
Q 011470 62 FTCGYSSPTQTAITRDLELTL--SEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARE--SS 137 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~--~~ 137 (485)
++.....+..+.+.++++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.++.++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 566666778888888888776 58999999999999999999999999999999888888776677777777776 89
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhcCCC-CcchhHHHHHHH-HHHHHHHHHHHhhccc------cchhHHHhhHHHHH
Q 011470 138 FLYMGRLLEGFGVGIISYTVPVYIAEIAPQ-NLRGALGSVNQL-SVTIGIMLAYLLGLFV------PWRILAVLGILPCT 209 (485)
Q Consensus 138 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~ 209 (485)
.+++.|+.+|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+ +||+.|........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999998 678888888888 5778888887666544 68886666554443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=97.89 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=110.9
Q ss_pred ccccccchhHHHHHhh-hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hHHH
Q 011470 62 FTCGYSSPTQTAITRD-LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ESSF 138 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~ 138 (485)
..........+.+.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL 317 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 4444445555655555 4544 6788888999999999999999999999999999999999999999999886 9999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhcCCC-------CcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 139 LYMGRLLEGFGVGIISYTVPVYIAEIAPQ-------NLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 139 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
+++.-++.|++.+...+...++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998863 2348888888888888888887766544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=112.91 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=111.7
Q ss_pred hHHHH-HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---------------
Q 011470 70 TQTAI-TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA--------------- 133 (485)
Q Consensus 70 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--------------- 133 (485)
.+|.+ .+.+|.+..+.|++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 45554 45589999999999999999999999999999999888877777766666666555543
Q ss_pred -----hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHh
Q 011470 134 -----RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----PWRILAVL 203 (485)
Q Consensus 134 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~wr~~f~~ 203 (485)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++.+.+ ++...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67788888999999999999999999999999999999999999999999999988877655 34555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-07 Score=80.71 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=93.9
Q ss_pred HHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh-----hhchhHHHHH-HHHHHHH
Q 011470 52 IVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISE-----YIGRKGSLMI-AAIPNII 125 (485)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~-~~~l~~~ 125 (485)
.+.+-+...|...+... .+|.+-+.-|.|.++.+...-++ ..+ ---++|.++.| |+||||.-++ +..+.+.
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 34444555688888887 89999988888888776543222 111 23568999999 9999885433 4444333
Q ss_pred HHHHHHHh-----------hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 011470 126 GWLAISFA-----------RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG 192 (485)
Q Consensus 126 ~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 192 (485)
.+++.+.- ++...+...-++.-+..+..-.+.-.+.-.+..+++.|.+......+.+.|.+++..+-
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 33333321 33334444556667777777788888888888999999999999999999888886553
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=92.69 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=94.7
Q ss_pred HHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchh
Q 011470 93 NVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGA 172 (485)
Q Consensus 93 ~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 172 (485)
.+.-.-|.++.+++.||+|||+.+..+.++++++.++.-.+.+-....+.-|..-+...+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34556788899999999999999999999999999988877544333333333333345566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc--chhHHHhhHHHHHHHHHHhhccCCc
Q 011470 173 LGSVNQLSVTIGIMLAYLLGLFVP--WRILAVLGILPCTILITGLFFIPES 221 (485)
Q Consensus 173 ~~~~~~~~~~~G~~~~~~~~~~l~--wr~~f~~~~~~~~~~~~~~~~~~e~ 221 (485)
..|.-+...-+|.++.|+++-..+ -..+..+.....++..+...++|-.
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 999999999999999999983332 2233344444445555555666643
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=88.42 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
.....+++..++.++..|.++||+|||.++..+.+..++..++.+..... ..+...=+..+..
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-----------------~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-----------------AAFVLARFLGGIF 134 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhhhc
Confidence 44455688899999999999999999999999999888877777654221 1111111222222
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
-+...+..++++|+++++.|+.+++.+++...+|.++||.++|++..
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 33444556999999999999999999999999999999999999887
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-08 Score=94.53 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=94.0
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHh
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF-----ARESSFLYMGRLLEG 147 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~r~l~G 147 (485)
.+.+...-+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|
T Consensus 256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 333333334556777777777899999999999999999999999888877766655443 345677777888999
Q ss_pred hhhhhhhhhHHHHHHhcCCC-------CcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 148 FGVGIISYTVPVYIAEIAPQ-------NLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
++.+...+...++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998652 2336688888888888888887766554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=71.16 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred ccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011470 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFL 139 (485)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (485)
.++.+..++|.+|.+++|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred H
Q 011470 140 Y 140 (485)
Q Consensus 140 ~ 140 (485)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=89.60 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=108.3
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHH----HhcchhHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLAD----KAGRRALLIIS-SVGMTVSILIVAVSFFVKG 369 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 369 (485)
+.....+.+.+.++.|.+... .......+.+++..++.|+++| |+|||+..+.. .....++..++........
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 445556667788888997665 4455567888999999999999 59999988764 4444455555443322110
Q ss_pred ccCC--CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccch--hhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011470 370 FVSD--DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIK--GLAGSVATLANWLTVWLITMTANLLL-- 443 (485)
Q Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~i~g~~~-- 443 (485)
.... +.....+..+..++.+.+..+.......|.. +++.|..|+++| +.+.+..+....+|+.+++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0000 0000011112233333344444444444554 899999998865 67999999999999999999988652
Q ss_pred Hh--------------hcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 444 NW--------------SGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 444 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
+. +....|.+.+++.++..++.++..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 11 1122355555555555666666677754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=84.09 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=102.2
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHhhhhh
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNII-GWLAISFARESSFLYMGRLLEGFGVG 151 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~ 151 (485)
..++.||+|+.+.+.+.+.-..-.++.+++.|.++||+|++-..+.+.++..+ +-....| +++.=+++..+.|++.+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 57889999999999999999999999999999999999999877776655443 3333333 34444577888999988
Q ss_pred hhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 152 IISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
.........++...|+++.|.+.+..+...++|.++.|++++.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 88777888899999999999999999999999999999999888
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=97.94 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
+.+.+..+.+...........+.+.+++++++.+ .......++..++.++.+++.||.+||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 4444444444433445555667777788887766 45556678889999999999999999999999999999999888
Q ss_pred HHHHHhhcccCCC---------------------------C----cch-----hhHHHHHHHHHHHHHHHHhcCcccchh
Q 011470 362 AVSFFVKGFVSDD---------------------------S----SCY-----SILDIFSVIGVVAMVVTFSLGMGPIPW 405 (485)
Q Consensus 362 ~~~~~~~~~~~~~---------------------------~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (485)
++........... + ... .......++.-++.+.+.+ ...+...
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~ 194 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGI 194 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCc
Confidence 7764322110000 0 000 0011122333333333333 3335556
Q ss_pred hhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 406 VIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
+++.|.+|+++|+...|+.+....+|..+|+.+.+.+.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-07 Score=92.29 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=87.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 011470 83 SEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF--ARESSFLYMGRLLEGFGVGIISYTVPVY 160 (485)
Q Consensus 83 ~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 160 (485)
+..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999999999999999888776654443333 3577778888899999999999999999
Q ss_pred HHhcCCC-------CcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 161 IAEIAPQ-------NLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 161 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
++|..+. ++.|...+.......+|..+++.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998752 2236677888888888888888777654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-07 Score=80.68 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=107.4
Q ss_pred HhhcchhhHHHhHHHHHhHcCCCchhhHHH--HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 292 QQLSGINGVVFYSSTIFESAGITSSDVATL--GLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKG 369 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (485)
......+.+..|.|.+.++.|+++.+...+ ...++..+ .++.|.+.|++|++..+.++.+...+++..+........
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 334456678889999999999998884433 33555555 588899999999999999999999999988876543321
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHhcCc-ccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011470 370 FVSDDSSCYSILDIFSVIGVVAMVVTFSLGM-GPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGG 448 (485)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~ 448 (485)
. .. ..+...++.+..+.+..+ .........+.+| ++||++.|+.-....+++.+-..+...+.+.+..
T Consensus 92 ~---------~~-~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 92 P---------SL-PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred C---------cc-chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 1 00 112223333333333322 2222244557787 6899999999999999999888887777664433
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc
Q 011470 449 GTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
....+.+....+..++...+++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 3344444444444444444444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=85.79 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCC
Q 011470 87 LFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 166 (485)
Q Consensus 87 ~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 166 (485)
.+.-+-.+...+.-+.+.+..+|...+.=+..+.+++.++.++.++++|.+.=+++-++.+++.|........+. ..++
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~ 141 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcC
Confidence 344444455666667777888888765555666678888999999999999999999999999998877777764 4555
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccc---c--chhHHHhhHHHHH-HHHHHhhccCCc
Q 011470 167 QNLRGALGSVNQLSVTIGIMLAYLLGLFV---P--WRILAVLGILPCT-ILITGLFFIPES 221 (485)
Q Consensus 167 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~--wr~~f~~~~~~~~-~~~~~~~~~~e~ 221 (485)
+ ...+-++.|.+.+.++|+..-..+ + -|..+++..+..+ ..+..++.+|.+
T Consensus 142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 142 K----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred c----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 346777777777777776544322 3 3556666444433 344444455543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=92.33 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=99.3
Q ss_pred HHhHHHHHhHcCCCchh-hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 011470 301 VFYSSTIFESAGITSSD-VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYS 379 (485)
Q Consensus 301 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (485)
...++.+.++.|-++.. +......+...++.++.|+++|.+|||+.++.+.++..++.++.+......
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~----------- 132 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN----------- 132 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH-----------
Confidence 34456677777776555 555566788889999999999999999999999999999988877542222
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHH
Q 011470 380 ILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-WSGGGTFAIYTVVS 458 (485)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~~~~~~~~~~~~~ 458 (485)
..+....+.+.+. +........++|..|.+.|..+.++.....-.....+|.+...+.. .+..+.+++..+..
T Consensus 133 ----~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 133 ----TFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred ----HHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 2234444444443 3333444668999999999888777665554444466666655544 34444555555555
Q ss_pred HHHHHHHHHh
Q 011470 459 AFTVAFVSIW 468 (485)
Q Consensus 459 ~~~~~~~~~~ 468 (485)
.+..+...++
T Consensus 207 ~i~~vl~~~f 216 (599)
T PF06609_consen 207 GIALVLIFFF 216 (599)
T ss_pred HHHHHHHHHH
Confidence 5544443333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=89.69 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
..+....+..++.+++.|.+.||+|+|..+++|...+....+++++.-.. +..+++-.+-+.+.+
T Consensus 110 ~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy---------------~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 110 LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY---------------PMLFVARSLQGVGSA 174 (464)
T ss_pred HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh---------------HHHHHHHHHhhhhHH
Confidence 56666789999999999999999999999999999999988888875221 233444444444444
Q ss_pred cCcccchhhhccccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 398 LGMGPIPWVIMSEILPINI-KGLAGSVATLANWLTVWLITMTANLLLN-WSGGGTFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
.... ...+++++.+|+++ |++++|+...+..+|-.+||.++|.++| .|.+..|.+.+.++++-..+-++.++.++.+
T Consensus 175 ~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 175 FADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 4333 33488999999876 6999999999999999999999999999 5666678888888777777766666554433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=91.23 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=116.6
Q ss_pred hhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHH
Q 011470 76 RDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA----------RESSFLYMGRLL 145 (485)
Q Consensus 76 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~r~l 145 (485)
+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999999887654311 344455666789
Q ss_pred HhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c-----chhHHHh---hHHHHHHHHH
Q 011470 146 EGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P-----WRILAVL---GILPCTILIT 213 (485)
Q Consensus 146 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-----wr~~f~~---~~~~~~~~~~ 213 (485)
.+++.+..+.+...++.+..|+++++...++.....++|..+++.+++.+ | ++..+.. ..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877665 3 3333222 3333344444
Q ss_pred HhhccCC
Q 011470 214 GLFFIPE 220 (485)
Q Consensus 214 ~~~~~~e 220 (485)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4457786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=76.12 Aligned_cols=313 Identities=13% Similarity=0.110 Sum_probs=164.2
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLE 146 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~ 146 (485)
.+|.+-.+-+.++....|+|.+.-+.+....++..+.|.|+|+-|||+.-+.-++...+++ +.-.+++|-.++++|.+-
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhh
Confidence 3566666778889999999999888888899999999999999999996554444333332 334568899999999999
Q ss_pred hhhhhhhhhhHHHH-HHhcCCCCcchhHHHHHH--------HHHHHHHHHHHHhhccc------cchhHHHhhHHHHHH-
Q 011470 147 GFGVGIISYTVPVY-IAEIAPQNLRGALGSVNQ--------LSVTIGIMLAYLLGLFV------PWRILAVLGILPCTI- 210 (485)
Q Consensus 147 G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~~- 210 (485)
|+..+..+.+--++ +.|.-. +|+.---+.. .+.++=.+++.+.+..+ |=-.+|-.++....+
T Consensus 135 GiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 99999988887766 455542 2322111111 12222233333333332 222445443332222
Q ss_pred HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHH
Q 011470 211 LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLI 290 (485)
Q Consensus 211 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (485)
..++.- .|-+.-++..+.++.+....+ ..+.+...+ +..+.-.+..
T Consensus 213 mAvil~------~W~ENygdps~~kdlltqf~g-------------------------aa~aiaSD~---ki~LLG~iqs 258 (454)
T KOG4332|consen 213 MAVILS------SWSENYGDPSENKDLLTQFKG-------------------------AARAIASDE---KIALLGAIQS 258 (454)
T ss_pred HHHHHh------hhhhccCChhhhHHHHHHhhH-------------------------hHHHHhcch---HHHHHHHHHH
Confidence 222211 121222222222221111110 011111111 1122222333
Q ss_pred HHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 291 LQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLADKAGRR--ALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
.+....+..+..|.|.+..+-.--+....+..+.+..++|+-+..++..|-..| ..+.+.+.+......+........
T Consensus 259 LFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs 338 (454)
T KOG4332|consen 259 LFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS 338 (454)
T ss_pred HHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 333333334444555543211111233566666777788887777776654433 344455444444443333322211
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHH
Q 011470 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVAT 425 (485)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 425 (485)
. +. -.+...++..+++-...+..++++. -+-.+..|.+.|++.+-...
T Consensus 339 -P--~k-----es~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 339 -P--SK-----ESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred -C--Cc-----CCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence 1 11 1122335666666666666665555 67778889998887765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-06 Score=77.39 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=100.4
Q ss_pred hHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 299 GVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
......|.+.+.++.+..+ ........+..+.++..+++.+|+|+|+-++.+..++++++.++.-.......
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y------ 104 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSY------ 104 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH------
Confidence 3445667777777887666 55556678889999999999999999999999999999999888654333221
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
...+..+++.+.+.+..-... ..++....|++..+.-+.+...++.+|.+++|.+.+.+..
T Consensus 105 ------~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 105 ------GFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ------HHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233344444444444333333 4888888888888889999999999999999999998876
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-07 Score=86.37 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
........+.+++.+.++++.||+|.|+++..+.++.+++.+++.+...... +..++.-++.+.+.+
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~-------------~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF-------------YLLLVLRFLQGLGQG 143 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhhHHHHHHhHHHHh
Confidence 5566778899999999999999999999999999999998888887754432 234566666666666
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHhcccC
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW--SGGGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
..+..+. .+..+-.|+++|++..++.....++|.+++-++.|.+-+. |....|++.+++.++..++.+.+..+.
T Consensus 144 ~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 144 VLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred HHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6655555 8999999999999999999999999999999999999884 556668888888777777666665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-06 Score=77.12 Aligned_cols=164 Identities=18% Similarity=0.114 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAA 120 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~ 120 (485)
+++..|.+.+.+.+-.+. ....-.-+|.+-.|-|+|..+.|++.+...+.....++....+++|. ++|+..+...
T Consensus 206 ~~~~aW~vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred cCchhHHHHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 344445554444444332 22333458999999999999999999999999999999999999976 5778888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHhhccc----
Q 011470 121 IPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLR-GALGSVNQLSVTIGIMLAYLLGLFV---- 195 (485)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~~~~~l---- 195 (485)
+.+.++.+.+.+.+.-..+.. -++.|+|.|..++.+..++.+..++.++ ++..++.+....+=...||.+.+++
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 888888888878765443333 4999999999999999999988765443 5555655555555556688888887
Q ss_pred -cchhHHHhhHHHHHH
Q 011470 196 -PWRILAVLGILPCTI 210 (485)
Q Consensus 196 -~wr~~f~~~~~~~~~ 210 (485)
+|+...+.-+...+.
T Consensus 361 gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 361 GSWSAPLVLLALATLL 376 (395)
T ss_pred CChHHHHHHHHHHHHH
Confidence 799887765444444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-06 Score=78.04 Aligned_cols=140 Identities=13% Similarity=0.219 Sum_probs=116.3
Q ss_pred HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHh-hhchhHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhh
Q 011470 75 TRDLELTLSEFSLFASLSNVGAMVGAITSGQISE-YIGRKGSLMIAAIPNIIGWLAISF---ARESSFLYMGRLLEGFGV 150 (485)
Q Consensus 75 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~r~l~G~~~ 150 (485)
.+-||.+..|..-+.+....|..++-...|++.. |.++|+.-.+|+.+..++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4558999999999999999999999999999888 678888888888888776666544 467889999999999999
Q ss_pred hhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc--------------cchhHHHhhHHHHHHHHHH
Q 011470 151 GIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--------------PWRILAVLGILPCTILITG 214 (485)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--------------~wr~~f~~~~~~~~~~~~~ 214 (485)
|.......+...+..++++.|..+|.+.....++..++..+++.+ +|-.+|.+-++..+..+.+
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888887777654 3556677655555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-06 Score=83.08 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
.......++..++.++.|+++|++|||+.+..+.+...++.++...+.. .....++-++.+.+.+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---------------~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---------------WYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhccchh
Confidence 5555668899999999999999999999999999999999999887742 2345666677777766
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhcccC
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWS--GGGTFAIYTVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (485)
......+ .+.+|..|++.||...+.......+|..++ .+.+...+.. +|........+..+...+..++.||.
T Consensus 158 ~~~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 158 GASVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhhhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6655555 999999999999999999998888777777 5555554422 33333333334444444446666654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=66.97 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=98.0
Q ss_pred hhHHHHHhh--hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011470 69 PTQTAITRD--LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLE 146 (485)
Q Consensus 69 ~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~ 146 (485)
+++..+.++ -++++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-++.
T Consensus 21 svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~ 99 (156)
T PF05978_consen 21 SVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALL 99 (156)
T ss_pred HHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence 334444443 2333333344567777888889999999999999999999999988754443 3567888999999999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL 193 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 193 (485)
|++.+..++....++.+..++++|++-.++.......+.++|.++..
T Consensus 100 G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 100 GFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=84.40 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
....+..++..+|+++.|.++||+|||+++..+..+..++.+..++.... ....+.-++.+++ .
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~---------------~~~~~~Rfl~G~~-~ 185 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY---------------WMFLIFRFLSGFF-G 185 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH---------------HHHHHHHHHHHhh-c
Confidence 55666788889999999999999999999999999998888777665322 1223333333333 3
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.+...+.+.+..|.++++.|+.+..+ ....+.++.+++...+++..
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 34455566999999999999999999 88888999999999988877
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=79.61 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=94.3
Q ss_pred hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhh
Q 011470 78 LELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ESSFLYMGRLLEGFGVGIISY 155 (485)
Q Consensus 78 ~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~ 155 (485)
+|-++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455666677788888888888899999999999999999999999999999998876 788999999999999999999
Q ss_pred hHHHHHHhcCCC------Cc-chhHHHHHHHHHHHHHHHHHHhhc
Q 011470 156 TVPVYIAEIAPQ------NL-RGALGSVNQLSVTIGIMLAYLLGL 193 (485)
Q Consensus 156 ~~~~~i~~~~~~------~~-r~~~~~~~~~~~~~G~~~~~~~~~ 193 (485)
...++++|..+- ++ -|...+......=+|.+++..+.+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876542 22 266666666666667666654443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00088 Score=64.59 Aligned_cols=126 Identities=12% Similarity=0.109 Sum_probs=83.9
Q ss_pred hHHHHHhhhCC---CchhhhHHHHHHHH-HHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh--h---------
Q 011470 70 TQTAITRDLEL---TLSEFSLFASLSNV-GAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA--R--------- 134 (485)
Q Consensus 70 ~~~~i~~~~~~---s~~~~~~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~--------- 134 (485)
++-.++|.+=+ ++..+.++=....+ ...+......++++|++|.+++-+.+..+.....+.++. |
T Consensus 42 ~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~ 121 (491)
T PF03219_consen 42 ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDA 121 (491)
T ss_pred HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCH
Confidence 34445554422 34445555554444 445667789999999999999888877777666666653 1
Q ss_pred --------------------hHHHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 011470 135 --------------------ESSFLYMGRLLEGFGVGIISY-TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL 193 (485)
Q Consensus 135 --------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 193 (485)
+.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..++...+.++|.++++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~ 201 (491)
T PF03219_consen 122 FADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTS 201 (491)
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444443344433 45778899999999999999999999999999876654
Q ss_pred cc
Q 011470 194 FV 195 (485)
Q Consensus 194 ~l 195 (485)
.+
T Consensus 202 ~~ 203 (491)
T PF03219_consen 202 YF 203 (491)
T ss_pred HH
Confidence 44
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-06 Score=79.31 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=75.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhhHHH
Q 011470 82 LSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR--ESSFLYMGRLLEGFGVGIISYTVPV 159 (485)
Q Consensus 82 ~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~ 159 (485)
+...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999999999999999999988766555544444433332 2334455556778888777777777
Q ss_pred HHHhcCCC-------CcchhHHHHHHHHHHHHHHHHHHhhcc
Q 011470 160 YIAEIAPQ-------NLRGALGSVNQLSVTIGIMLAYLLGLF 194 (485)
Q Consensus 160 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 194 (485)
++.|..+. ++.|...+......-+|..+++.+++.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776652 222555566666666777766655543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=75.23 Aligned_cols=333 Identities=13% Similarity=0.143 Sum_probs=187.7
Q ss_pred hhhCCCchhhh-HHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q 011470 76 RDLELTLSEFS-LFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIIS 154 (485)
Q Consensus 76 ~~~~~s~~~~~-~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 154 (485)
.+.|++..|.. =+.-...-.+.+.-.+.=.+.|-.-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE- 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE- 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-
Confidence 35566666542 2333344455666667778899998899998887777788888889999999999999999977654
Q ss_pred hhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc------cchhHHHhhHHHHHHHHHHhhccCCchhHHHhc
Q 011470 155 YTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV------PWRILAVLGILPCTILITGLFFIPESPRWLAKM 228 (485)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 228 (485)
.+-++++-+..+++++.++.+.-.+..-.|...|..++..+ +++..=.+......+......++|..+|.+.-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 77788889999999999999999888888888888777665 333333445555556667777888776544333
Q ss_pred CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHH
Q 011470 229 GMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIF 308 (485)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (485)
.+.++.. .......++ +.+..+.. +.....-...+.+..+++ .+....+.+....++++.+.+|...+.
T Consensus 193 ~~~~~~~--v~~~e~~~~--~~~~~~~l---~~~~~~l~~~l~~~y~np----~ll~WSlWwAl~scg~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMNP--QASYMSYL---RGAFVLLWRDLQECYSNP----RLLKWSLWWALASCGYYQVTNYTQILW 261 (433)
T ss_pred cccccce--eccchhcCc--cchhhHHH---HHHHHHHHHHHHHHhcCc----hhhhhHHHHHHhhchhHHHHHHHHHHH
Confidence 2222110 000000000 00000000 000000001122222232 233344445555566777888888877
Q ss_pred hHcCCCchh----hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHH
Q 011470 309 ESAGITSSD----VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIF 384 (485)
Q Consensus 309 ~~~g~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (485)
++..-.+.. ..-.+..+.+.++.+..|++--++.|+.-+.++......+.+++... ... ..|.
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-~t~------------~Iw~ 328 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-QTQ------------HIWV 328 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-ccc------------ceeh
Confidence 776422222 23334456677888888887655555432222222222222222211 111 1233
Q ss_pred HHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHH
Q 011470 385 SVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWL 434 (485)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 434 (485)
..+...++...+........ .-+++....|.-|...|+..+..-+-..+
T Consensus 329 ~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsi 377 (433)
T KOG3810|consen 329 CYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSI 377 (433)
T ss_pred hhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHh
Confidence 34445555555554433333 33444446677888888887765444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.3e-06 Score=77.57 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCchh--hHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHH
Q 011470 312 GITSSD--VATLGLGALQVIATGVTTWLADKA-GRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIG 388 (485)
Q Consensus 312 g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (485)
|+++++ .....++...-+..+++||++||+ |+|+.+..+.++++++.++++..... ......+.
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~-------------~~~gl~i~ 123 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS-------------GPGGLYIG 123 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-------------cccHHHHH
Confidence 376665 333344445567888999999996 99999999999999999988865200 01133444
Q ss_pred HHHHHHHHhcCcccchhhhccccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 011470 389 VVAMVVTFSLGMGPIPWVIMSEILPIN--IKGLAGSVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVS 466 (485)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (485)
+.++..+.+ ..=+.....+.|++|++ +|-.+.++..+..++|+.++|.+.+++.+..++..-+..+.+.....++.+
T Consensus 124 L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 124 LALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 444444443 33455568999999764 356677788888899999999999999996555554444445444444444
Q ss_pred Hhcc
Q 011470 467 IWVP 470 (485)
Q Consensus 467 ~~~~ 470 (485)
...+
T Consensus 203 ~~~~ 206 (498)
T COG3104 203 LLGR 206 (498)
T ss_pred HHcc
Confidence 4444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-07 Score=84.65 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=121.9
Q ss_pred ccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011470 62 FTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYM 141 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 141 (485)
...+.+...+=.-.||++-.+.-.|.....-..+-.+.-++.+++..|+|+-+++..++....+=.+..+..+|.|..+.
T Consensus 385 ~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP 464 (618)
T KOG3762|consen 385 AGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP 464 (618)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee
Confidence 33333333444557788878888898888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHH-HHHHHHHHHHhhc----cccchhHHHhhHHHHHHHHH
Q 011470 142 GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLS-VTIGIMLAYLLGL----FVPWRILAVLGILPCTILIT 213 (485)
Q Consensus 142 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~----~l~wr~~f~~~~~~~~~~~~ 213 (485)
.-+++|+..+..+.+..+++++..||+-|..+.++.+.. .++|--+|.++|+ .++=|..|...++.+++.++
T Consensus 465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888887543 3444445555544 44777777776555554333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-09 Score=102.56 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=100.5
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH--H---hhh-----H
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAIS--F---ARE-----S 136 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~--~---~~~-----~ 136 (485)
.....+.+.++.+.+.. -.......+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++ .
T Consensus 272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445677777777766 2222233344556666777999999999999999999888887775 1 121 2
Q ss_pred HHHHHHHHHHhhhhh-hhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----c-chhHHHhhHHHHHH
Q 011470 137 SFLYMGRLLEGFGVG-IISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----P-WRILAVLGILPCTI 210 (485)
Q Consensus 137 ~~~~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-wr~~f~~~~~~~~~ 210 (485)
..+.... +..++.+ +..+....+..|.+|.+.|++..++......++.++++.+...+ + +.......++..+.
T Consensus 350 ~~i~~~~-l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 428 (451)
T PF00083_consen 350 LSIVFLA-LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIA 428 (451)
T ss_pred ccceeee-eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 2222222 2222222 34466668889999999999999999988888888877765544 3 33333334455555
Q ss_pred HHHHhhccCCch
Q 011470 211 LITGLFFIPESP 222 (485)
Q Consensus 211 ~~~~~~~~~e~p 222 (485)
.++.++++||+.
T Consensus 429 ~i~~~~~lpET~ 440 (451)
T PF00083_consen 429 IIFVYFFLPETK 440 (451)
T ss_pred HhheeEEEeeCC
Confidence 677788899984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=81.08 Aligned_cols=141 Identities=14% Similarity=-0.018 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
.....+.++.+++.+.++++.||++-.+.+....++..+..++... .. ..+..++.-++.+.+-+
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~~------------s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VH------------SFPGLIALRFLLGLFES 149 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---Hh------------hhHHHHHHHHHHHHHhc
Confidence 5566778999999999999999999555544433333222222221 11 11334555666677777
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHHHHHhcc
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-------WSGGGTFAIYTVVSAFTVAFVSIWVP 470 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
.++++.. .++...+.+++|+..+|+.+....+|+++|+.+...+.. .+..+.|.+-+++.++..+++++++|
T Consensus 150 ~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 150 GGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred ccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 6666665 899999999999999999999999999999999988643 45566788888888888888888887
Q ss_pred cCCC
Q 011470 471 ETKG 474 (485)
Q Consensus 471 ~~~~ 474 (485)
+...
T Consensus 229 ~~P~ 232 (495)
T KOG2533|consen 229 DNPS 232 (495)
T ss_pred CChh
Confidence 6543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-07 Score=83.63 Aligned_cols=172 Identities=16% Similarity=0.078 Sum_probs=125.7
Q ss_pred HHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhH----HHHH-----HHHHHHHHHHhHHHHHhhhchhHHHHH
Q 011470 48 ACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSL----FASL-----SNVGAMVGAITSGQISEYIGRKGSLMI 118 (485)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~----~~s~-----~~~~~~i~~~~~G~l~dr~Grr~~~~~ 118 (485)
..++..+..+|+.-+.....+.....+.++.++.+.+... -.+. -..++..+-.+...++|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5667778888887777777777888899988876655433 1111 122233355566778999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-H---H----HHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011470 119 AAIPNIIGWLAISFARE-S---S----FLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYL 190 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~-~---~----~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 190 (485)
|.+++++..+..+...| . . ...+..++.-+|- ......+-+|.+|.+-|+...|+..+..-.|.+++..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988776 1 1 2222333333332 2334455689999999999999999999999998876
Q ss_pred hhccc---------cchhHHHhhHHHHHHHHHHhhccCCch
Q 011470 191 LGLFV---------PWRILAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 191 ~~~~l---------~wr~~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
.-..+ +-|+.+++.+...+..++..+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 54333 688999998888888888888999985
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.6e-05 Score=72.68 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=119.5
Q ss_pred cccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhhhH-------
Q 011470 65 GYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNIIGWLAISFARES------- 136 (485)
Q Consensus 65 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~~~------- 136 (485)
+.....+..+.+++|.+...+.-..+.+.-...+..+.++.++|-| ||-+++.++.++..++..+..++...
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 3456778899999999998899999999999999999999999976 89999999999888886655543211
Q ss_pred ------------------HHHHHHHHHHhhhhhhhhhhHHHHHHhcCC---CCc---chhHHHHHHHHHHHHHHHHHHhh
Q 011470 137 ------------------SFLYMGRLLEGFGVGIISYTVPVYIAEIAP---QNL---RGALGSVNQLSVTIGIMLAYLLG 192 (485)
Q Consensus 137 ------------------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~~~ 192 (485)
..++...-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+-
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 256667788888999999999999999998 322 24778888999999998887665
Q ss_pred ccc----cchhHHHhhHHHHHHHHHHhh
Q 011470 193 LFV----PWRILAVLGILPCTILITGLF 216 (485)
Q Consensus 193 ~~l----~wr~~f~~~~~~~~~~~~~~~ 216 (485)
.+. +|.+-|.+..+...+++++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 554 899988886665555444433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=60.35 Aligned_cols=64 Identities=11% Similarity=0.228 Sum_probs=55.2
Q ss_pred ccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHH
Q 011470 60 FGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPN 123 (485)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~ 123 (485)
.....+...|.+|...++.|+++.|+|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3445566778888888899999999999999999999999999999999999988877766543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=67.69 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=85.4
Q ss_pred HHhhhhccccccccccchhHHHHHhh--hCCCchhhhHHHHHHHHHHHHHHHhHHHHHh-----hhchhHHHHH-HHHHH
Q 011470 52 IVALGPIQFGFTCGYSSPTQTAITRD--LELTLSEFSLFASLSNVGAMVGAITSGQISE-----YIGRKGSLMI-AAIPN 123 (485)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~-~~~l~ 123 (485)
++.+-+++.|...+.....+|.+-++ -++|.+|.|...-+ ...+. .-++|.++.| |+||||.-++ .-.+.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 45566777788888876778988888 68888887653211 11111 2456777777 8999986443 33333
Q ss_pred HHHHHHHHHhh------------------------hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHH
Q 011470 124 IIGWLAISFAR------------------------ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQL 179 (485)
Q Consensus 124 ~~~~~~~~~~~------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 179 (485)
++..+..+..- +...+...-++.=+-.+..-.+.-.+.-....+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 33333332211 011122222233333444555555666677788999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 011470 180 SVTIGIMLAYLLGLF 194 (485)
Q Consensus 180 ~~~~G~~~~~~~~~~ 194 (485)
+.+.|..++..+--.
T Consensus 162 G~~~Gyfls~tvFla 176 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLA 176 (544)
T ss_pred HhhhhHHHHHHHHHh
Confidence 999999888665433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-05 Score=71.60 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Q 011470 323 LGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGP 402 (485)
Q Consensus 323 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (485)
.++..++.+...|.++||+|||..+........+..+.+.+.. ++..+ ..-..++++.. ..
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-----------------~~~~~-~~~l~g~~~~~-~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-----------------YWFFL-LLGLSGGFSAI-FS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-----------------HHHhh-hcccccchhhh-hh
Confidence 3677889999999999999999998887777766665555431 11111 22222222222 33
Q ss_pred chhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011470 403 IPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIWVPETKGKT 476 (485)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (485)
...+++++....+.|....|+.+.....+..++|.+.+.+.+. +....+.+..+...+.......++||+..++
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 4459999999999999999999999999999999999999884 4444566666666666677777888775544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-05 Score=73.48 Aligned_cols=180 Identities=8% Similarity=-0.021 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCc--hh--hHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHH
Q 011470 282 LTVGIGLLILQQLSGINGVVFYSSTIFESAGITS--SD--VATLGLGALQVIATGVTTWLADKAGR-RALLIISSVGMTV 356 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~ 356 (485)
.++...+..+...........-.-.|.++...+. .. +......++..+++++.|+...|.++ |+.++.+.+++.+
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~ 114 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII 114 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence 3444444444443333333333334455533332 22 45555678889999999999999876 8889999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHH
Q 011470 357 SILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLIT 436 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (485)
+.++.......... ..+..+++-++ .+.+.+.....-.|+++..-.+.|.++++..+...-+|.++||
T Consensus 115 g~llY~~l~~~~~~----------~~y~mL~~R~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 115 GNLLYLALAYVPNG----------VKYLMLVARIL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred HHHHHHHHHhcccc----------hHHHHHHHHHH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 99888554333321 11233333333 3333333445558888877778888888888887778888888
Q ss_pred HHHHHHHHhh--------------cchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 437 MTANLLLNWS--------------GGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 437 ~i~g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
.+...+...+ +..+.++.+.+.++..+...++++|..
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 7765554311 223456666666777777777777643
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.011 Score=55.85 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=93.0
Q ss_pred hhHHHHHhhhCCC---chhhhHHHHHHHH-HHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh---------h
Q 011470 69 PTQTAITRDLELT---LSEFSLFASLSNV-GAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR---------E 135 (485)
Q Consensus 69 ~~~~~i~~~~~~s---~~~~~~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~---------~ 135 (485)
..+-.+++.+.++ +..+.++=+..-+ +..+..++.+++.+++.+.+++-+-+..+....+++++.- +
T Consensus 44 ~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~ 123 (509)
T COG3202 44 NLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPD 123 (509)
T ss_pred HHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455677777554 5567777777777 7788999999999999999999988888888888777631 1
Q ss_pred -----------------------HHHHHHHHHHHhhhhhhhhh-hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHh
Q 011470 136 -----------------------SSFLYMGRLLEGFGVGIISY-TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL 191 (485)
Q Consensus 136 -----------------------~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 191 (485)
.|...+.....=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+
T Consensus 124 ~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~ 203 (509)
T COG3202 124 PEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEV 203 (509)
T ss_pred HHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 13333333333333333333 445667888988999999999999999999998888
Q ss_pred hccc
Q 011470 192 GLFV 195 (485)
Q Consensus 192 ~~~l 195 (485)
..++
T Consensus 204 ~~~~ 207 (509)
T COG3202 204 TSWL 207 (509)
T ss_pred HHHH
Confidence 7766
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00037 Score=65.94 Aligned_cols=105 Identities=13% Similarity=0.253 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCC---cchhHHHHHHHHH
Q 011470 114 GSLMIAAIPNIIGWLAISFAR---------ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQN---LRGALGSVNQLSV 181 (485)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 181 (485)
|+++++.++..+|.++..++. +.+.++++-++.++|.|+.-|...++.+|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 577888889999998855542 2367899999999999999999999999999876 3567888899999
Q ss_pred HHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhcc
Q 011470 182 TIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFI 218 (485)
Q Consensus 182 ~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 218 (485)
++|..+++.+..++ +|.+.|.+..+..+++++.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999888777 79999999877777665555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=66.74 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=94.9
Q ss_pred HHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH-----H
Q 011470 49 CVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP-----N 123 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l-----~ 123 (485)
.++-+.+.++..++....+.+.+. ...++.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+- .
T Consensus 248 ymiPL~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~ 322 (402)
T PF02487_consen 248 YMIPLFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVF 322 (402)
T ss_pred HHHHHHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHH
Confidence 344455566555544333222211 112344346678888888888877765432211 33 3333333222 2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 124 IIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
.+.....-+.++.|..++.-+..|+..|..++-....+.|-.++++|...++....+-++|..++.+++-.+
T Consensus 323 ~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 323 LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222233345689999999999999999999999999999999999999999999999999999999887554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0029 Score=63.73 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=82.7
Q ss_pred HHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHH
Q 011470 306 TIFESAGITSSD--VATLGLGALQVIATGVTTWLADK-AGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILD 382 (485)
Q Consensus 306 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (485)
++.+..|.+... .....+....-+..+++|+++|+ +|+++.+..+.++..++..++.+....... . ....
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~-----~--~~~~ 85 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG-----H--PLHD 85 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc-----c--chHH
Confidence 334446776555 33333444556777888999997 599999999998888888777653211000 0 0111
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhccccCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 383 IFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN---IKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
...++++.+...+.+.. -|...+...|.++++ .+.....+.....++|+.+++.+.+++.+
T Consensus 86 ~~~l~gLaLia~G~Ggi-Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 86 LLDLLGLALIALGTGGI-KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHHHHHHHHHHhhcccc-ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444333 344447888877653 36677888888899999999999998875
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.007 Score=54.99 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=81.9
Q ss_pred HHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHH
Q 011470 307 IFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIF 384 (485)
Q Consensus 307 ~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (485)
+.+++|++..+ ..+........+...+.|.++||+|||+.-+...++..++++.--. .. ...
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----~~------------~~~ 123 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----SN------------YPV 123 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----cc------------cHH
Confidence 34678998777 3344445677788888999999999999877776666666653221 10 012
Q ss_pred HHHHHHHHHHHHhcCcccchhhhcc----ccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhh---cchhHHHHHH
Q 011470 385 SVIGVVAMVVTFSLGMGPIPWVIMS----EILPINIKGLAGSVAT-LANWLTVWLITMTANLLLNWS---GGGTFAIYTV 456 (485)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~-~~~~~g~~~~~~i~g~~~~~~---~~~~~~~~~~ 456 (485)
.++.-++.+...+......=.=++. .-+|++..+...+... ..+.+-.+.+..+...+.+.. .-.++.....
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~ 203 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV 203 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence 2233233333332222211112233 3346665666666555 334445555666666666632 2334555555
Q ss_pred HHHHHHHHHHHhcccCCC
Q 011470 457 VSAFTVAFVSIWVPETKG 474 (485)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~ 474 (485)
++.+..+++....+|..+
T Consensus 204 ~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 204 LLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHhcccccCC
Confidence 555555555444555544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0042 Score=59.49 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc----------ccch--hHHH
Q 011470 135 ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF----------VPWR--ILAV 202 (485)
Q Consensus 135 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------l~wr--~~f~ 202 (485)
.++..++.-++.|++.+.......++.+ .+|++ .+..+..|.+++++++.++--. ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5667777778899998888877777766 55543 3444455555555544332211 1122 2344
Q ss_pred hhHHHHHHHHHHhhccCCchh
Q 011470 203 LGILPCTILITGLFFIPESPR 223 (485)
Q Consensus 203 ~~~~~~~~~~~~~~~~~e~p~ 223 (485)
++++..++.++.+..++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455566666666667776653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00058 Score=47.33 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=50.3
Q ss_pred HHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 011470 289 LILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSV 352 (485)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 352 (485)
.++..++....+.-|.+.+.++.|+++.+ ....+..+..+++.++.|.++||.++++.......
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34444555667778889999999999887 55556678899999999999999999988765543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.026 Score=52.40 Aligned_cols=166 Identities=9% Similarity=0.034 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHH----HHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSN----VGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~----~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
+.+.++..++. -...+....+.+...+++--+.. .......+. +...+....-..+.-|. |+++.......
T Consensus 20 ~~i~~llGiG~---LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~ 94 (406)
T KOG1479|consen 20 YLIFLLLGIGT---LLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLI 94 (406)
T ss_pred HHHHHHHhccc---ccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444443 35566666777778777744433 333333333 33344444444445552 22221111111
Q ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHh--
Q 011470 123 NIIGWLAISFA---------RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL-- 191 (485)
Q Consensus 123 ~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-- 191 (485)
..+....+.++ ..+...++.-.+.|++.|..........++. |++.-. -...|.++++++..++
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl~~i 169 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSLLRI 169 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHHHHH
Confidence 11222222222 2456667777888888887777766665554 444322 2223333433333222
Q ss_pred -hccc------cchhHHHhhHHHHHHHHHHhhccCCch
Q 011470 192 -GLFV------PWRILAVLGILPCTILITGLFFIPESP 222 (485)
Q Consensus 192 -~~~l------~wr~~f~~~~~~~~~~~~~~~~~~e~p 222 (485)
.... +=...|.++.+..+++++.+..+|..|
T Consensus 170 ~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 170 LTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcch
Confidence 2111 223445566666666777766777766
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0071 Score=48.50 Aligned_cols=109 Identities=9% Similarity=-0.042 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
....+......+.+++.+.+.+++|.|+.++++.+...+-....... ..+..+....+.+.+.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~----------------~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP----------------NSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh----------------hHHHHHHHHHHHhhhhH
Confidence 45555566678888899999999999999998877766444333211 12344556666777777
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
..+.+.. .++.+...++.+++-.++.....+.+.++|..+.-.+.
T Consensus 105 ~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 105 LLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665 78888888899999999988888888887777655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.004 Score=59.11 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=100.7
Q ss_pred cchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh------h----hH
Q 011470 67 SSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFA------R----ES 136 (485)
Q Consensus 67 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~------~----~~ 136 (485)
+......+...-|+++..+|..-+...+....+.+...++.+|+|..|.=++++....++..++..+ + +.
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 4555555555569999999999999999999999999999999999988888877665544444332 1 33
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcccc
Q 011470 137 SFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVP 196 (485)
Q Consensus 137 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 196 (485)
..++.+-++.-+|.=+...+..-++.|..|+++||...|.-....++-.++...++-.++
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 445555555556666677788888999999999999999999999998888877766553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.006 Score=58.77 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=87.9
Q ss_pred HHHHHhHcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 011470 304 SSTIFESAGITSSDVATLG-LGALQVIATGVTTWLADKA-----GRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSC 377 (485)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
.+.+.+++|.++.+..... ..-.-....++.|.++|-+ +||..++++.++..++.+.+.........
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s------- 85 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS------- 85 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch-------
Confidence 3455567799877733322 1222345678899999976 35555666666665555544443221110
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcccchhhhccccC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHH
Q 011470 378 YSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEIL---PINIKGLAGSVATLANWLTVWLITMTANLLLN-WSGGGTFAI 453 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-~~~~~~~~~ 453 (485)
.....+.+++...+....- ...-+...|.. |.+ +|...+.......+|+.++..+.|.+.+ .+....+.+
T Consensus 86 ----~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 86 ----AAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ----hhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 1111222222233322221 22234555554 434 7888889999999999999999999988 444445555
Q ss_pred HHHHHHHHHHHHHHhccc
Q 011470 454 YTVVSAFTVAFVSIWVPE 471 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (485)
.+.+..+..+..+.+.+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 555555555555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0071 Score=56.32 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 318 VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
+...++.+..++..+.+-|+.||+|-|....++.....++..+=.+.....- +... +. .....+-.+......
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v----~~~f--~~-~l~~~Gq~iaa~Aq~ 155 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV----PPLF--RR-PLTHTGQSIAAAAQP 155 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc----cccc--hh-hhhHHhHHHHHHhhh
Confidence 6777788889999999999999999999999998888888766554322100 0000 00 111122111111111
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.. -.++.-...-.+|+++|+++..+..+.+.+|.+++..+-+.+..
T Consensus 156 Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 156 FI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred Hh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 11 11222344556899999999999999999999988888777665
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.018 Score=49.73 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=33.5
Q ss_pred CcchhHHHHHHHHHHHHHHHH--HHhhc-cc------cchhHHHhhHHHHHHHHHHhhc
Q 011470 168 NLRGALGSVNQLSVTIGIMLA--YLLGL-FV------PWRILAVLGILPCTILITGLFF 217 (485)
Q Consensus 168 ~~r~~~~~~~~~~~~~G~~~~--~~~~~-~l------~wr~~f~~~~~~~~~~~~~~~~ 217 (485)
|+|+..+.+...+.++|.++. |.+-. -. .|++.+.+.+++.++.++.+..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888899998875 33332 11 6999988866666554444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.046 Score=53.84 Aligned_cols=138 Identities=19% Similarity=0.091 Sum_probs=78.7
Q ss_pred HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHH-HHHHHH-HHHHHH----HHhhhH-HHHHHHHHHH
Q 011470 74 ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMI-AAIPNI-IGWLAI----SFARES-SFLYMGRLLE 146 (485)
Q Consensus 74 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~l~~-~~~~~~----~~~~~~-~~~~~~r~l~ 146 (485)
+.--+|-+..+.+.+.+++.+|.++|+.+.+++.++.-++...+- ++.+.+ ++..+. ++.... ..++..-++.
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444568888899999999999999999999988754333322111 111111 111111 111111 2233444667
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----c-chhHHHhhHHHHHHHH
Q 011470 147 GFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----P-WRILAVLGILPCTILI 212 (485)
Q Consensus 147 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~-wr~~f~~~~~~~~~~~ 212 (485)
|+..|+..|....+..+... ++-+...|-.+....+|.++|.++.+++ | .+..+.++++..++++
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 78888888887777665432 2234556666666777777776666554 4 3444444444433333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.097 Score=49.98 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhHHHHHh---hhchhHHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHh
Q 011470 89 ASLSNVGAMVGAITSGQISE---YIGRKGSLMIAAIPNIIGWLAISFA------------------RESSFLYMGRLLEG 147 (485)
Q Consensus 89 ~s~~~~~~~i~~~~~G~l~d---r~Grr~~~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~r~l~G 147 (485)
.-...++..+++.+.+.+.+ |+||++.+.++.++..++.++.-.. +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33344455555666666665 6789999999999888887776653 24667788889999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 011470 148 FGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLF 194 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 194 (485)
++.+......+.++.+.. +++|..+.++...-..++..++......
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999 5778888888887777777766554443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.14 Score=49.56 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc-----------hhhH----HHHHHHHHHH
Q 011470 327 QVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSC-----------YSIL----DIFSVIGVVA 391 (485)
Q Consensus 327 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~ 391 (485)
.++..++.+++++|++|++............++++++........-+++.. ..+. ..+......+
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 344478889999999999988877776666666666554322111110000 0000 0111122223
Q ss_pred HHHHHhcCccc-chhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 392 MVVTFSLGMGP-IPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
..-.++....+ +.|.+++|.+..++..+-.++.....++|..+++.+..++.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 668999999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.22 Score=46.78 Aligned_cols=155 Identities=10% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHhHHHHHhH-cCCCchhhHHHHH---HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 011470 301 VFYSSTIFES-AGITSSDVATLGL---GALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSS 376 (485)
Q Consensus 301 ~~~~~~~~~~-~g~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
.+..|++.+. .|++..+...-+. .-..++.-+....+.|.++.|+.++.+.+...+...++.+....
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv--------- 94 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV--------- 94 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH---------
Confidence 3444555554 6887776433322 33455667778889999999999998888777776666554111
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h-HHHH
Q 011470 377 CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSGGG-T-FAIY 454 (485)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~~~-~-~~~~ 454 (485)
...-+.-+.++...+. -...++|+-...|+++--++.+......-.|..++..++-.+...++.. . ...+
T Consensus 95 ------~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i 166 (412)
T PF01770_consen 95 ------LAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI 166 (412)
T ss_pred ------HHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1112222222222221 2233467777778888889999999988888888888887777633222 2 2233
Q ss_pred HHHHHHHHHHHHHhcccC
Q 011470 455 TVVSAFTVAFVSIWVPET 472 (485)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~ 472 (485)
...+...+++..+++|..
T Consensus 167 sl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 167 SLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 333333444444555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0011 Score=60.57 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHh
Q 011470 319 ATLGLGALQVIATGVTTWLADKA-GRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFS 397 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (485)
....+.++..+|+.+..+..-+. .+|++ .+..+.=.+...++...-..... +..+..-...+..++..++++...|
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~--~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRP--RYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhccc--ccCCCcccchHHHHHHHHHHHHccc
Confidence 44567889999999888743221 23333 32222222222111111011000 0000000111222333333333333
Q ss_pred cCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 011470 398 LGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTA 439 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~ 439 (485)
. ..+....+..+..++++|..+..+...+-.+|-.+|..+.
T Consensus 264 y-l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 264 Y-LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ----HHHH----------------------------------
T ss_pred h-hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345557888888888888887777777777777666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.061 Score=53.99 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 011470 281 PLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSI 358 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 358 (485)
.++.++.+..+.+......+..-...+-+.+++++.+ ......-++..+......+...|..|-+.+-++.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 3344555555555444444444555555667776665 33344567777777888888888888888889999999999
Q ss_pred HHHHHHHHhhccc-----------CCC--------------------Ccch--hhHHHHHHHHHHHHHHHHhcC---ccc
Q 011470 359 LIVAVSFFVKGFV-----------SDD--------------------SSCY--SILDIFSVIGVVAMVVTFSLG---MGP 402 (485)
Q Consensus 359 ~~~~~~~~~~~~~-----------~~~--------------------~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~ 402 (485)
++..+........ ..+ .+.. ........+.+++..+..+++ ..+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 8888764321110 000 0000 011111112222222222233 345
Q ss_pred chhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 403 IPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
+..+|+-|...+++.....|+...+..+|-++|-.++++...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667999999999999999999999999999988888887754
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=1 Score=44.50 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHH
Q 011470 416 IKGLAGSVATLANWLTVWLITMTANLLLN--WSGGGTFAIYTVVSAFTVA 463 (485)
Q Consensus 416 ~~~~~~g~~~~~~~~g~~~~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~ 463 (485)
..+...|-....+.+|+++|+.+.+++.- .+......+.+.+.++.++
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999998765 4444444454444444443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0019 Score=63.63 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=1.1
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
+.+..+.+......+....+.+-+++++++.+ ......-++.++..++..+..+|.+|-+.+-.+.++++++.+++.+
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33344444444444455566777778887776 4455567888888888889988888878888899999999988887
Q ss_pred HHHhhcccCCC-------------Ccc------------------hhhHHHHHHHHHHHHHHHHhcCc---ccchhhhcc
Q 011470 364 SFFVKGFVSDD-------------SSC------------------YSILDIFSVIGVVAMVVTFSLGM---GPIPWVIMS 409 (485)
Q Consensus 364 ~~~~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 409 (485)
........... ... ...........+++.....+.+. .++..+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 65433211000 000 00011111222222233333333 355679999
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 410 EILPINIKGLAGSVATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~ 443 (485)
|..+++..+...|+......+|-++|-.+++...
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999999998888888877776554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.014 Score=54.44 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=94.4
Q ss_pred hhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHH----hcchhHHH-HHHHHHHHHHHHHHHHHHhhc
Q 011470 297 INGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADK----AGRRALLI-ISSVGMTVSILIVAVSFFVKG 369 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 369 (485)
+..-..|.+.+.++.|.+... .......+.+++.+++.|..+|| +|||+..+ .+.....++..++........
T Consensus 48 wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 48 WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 344456777788888886554 33444467788889999999996 57777665 455556666666666554443
Q ss_pred ccCCCCc--chhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhh-HHHHHHHHHHHHHHHHHHHHH
Q 011470 370 FVSDDSS--CYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGL-AGSVATLANWLTVWLITMTAN 440 (485)
Q Consensus 370 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~~~~~~i~g 440 (485)
...++.. .........++.+.+.-+.......|.- ++..|+..++.+.+ +++....+..+|+.+|-...+
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 3222221 2223344455555566666666666776 88888887777777 999999988898888766554
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2 Score=38.75 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCC--Cc
Q 011470 92 SNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQ--NL 169 (485)
Q Consensus 92 ~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~ 169 (485)
..+..+.+..+.+.+..++|-|.++.++....... +..-+=+.+..++-.-.+.|++.+..+..--+++++.-.. ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34555566677779999999999999887766542 2223346788899999999999999888777776654321 12
Q ss_pred c-------------hhHHHHHHHHHHHHHHHHHHh
Q 011470 170 R-------------GALGSVNQLSVTIGIMLAYLL 191 (485)
Q Consensus 170 r-------------~~~~~~~~~~~~~G~~~~~~~ 191 (485)
| +....++....-.|..++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 344555566666665555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.5 Score=42.78 Aligned_cols=132 Identities=23% Similarity=0.198 Sum_probs=77.6
Q ss_pred HHHhHHHHHhHcCCCc----hhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 011470 300 VVFYSSTIFESAGITS----SDVATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDS 375 (485)
Q Consensus 300 ~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
.....+.+..+.+.+. .........+...++.++.|.+.||.|||+.+..+.....++.+.......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3344555555555443 235555556677777799999999999997766665543333222222211
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCc-cchhhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 011470 376 SCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPI-NIKGLAGSVATL-ANWLTVWLITMTANLLLNW 445 (485)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~i~g~~~~~ 445 (485)
.............+.+.+ ...+....+..|..|+ +.|+...+.... ....+..++|.+.+.+...
T Consensus 92 ----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 92 ----VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ----chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112222222222222 3345556888999887 678888888877 5777888888777766654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.5 Score=41.33 Aligned_cols=119 Identities=9% Similarity=0.051 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchh-----------h----HHHHHHHHHH
Q 011470 326 LQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYS-----------I----LDIFSVIGVV 390 (485)
Q Consensus 326 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~ 390 (485)
+.++...+..+++++++++++..+........+.++++........=+++..+. + ...+......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 446667778899999999998877666666666666554432211111111100 0 0001111222
Q ss_pred HHHHHHhcCcc-cchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 391 AMVVTFSLGMG-PIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 391 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
+..=.++.... -+.|.+++|.++.++..+..++.....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222332222 3458999999999999999999999999999999888887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.25 Score=47.58 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 011470 134 RESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLG 192 (485)
Q Consensus 134 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 192 (485)
++-+..++.-++.|+..|-....+..+..+..++++|..+..+......+|..+|..++
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999988888888887665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.42 Score=33.60 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=52.7
Q ss_pred hhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011470 298 NGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVS 364 (485)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (485)
+.++-.+|...++.+++..+ .......++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999998777 55556688999999999999888787888888888777777776654
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.53 Score=44.54 Aligned_cols=118 Identities=8% Similarity=-0.054 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCcc---chhhHH
Q 011470 345 ALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPIN---IKGLAG 421 (485)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~ 421 (485)
+.+.++.++..++.+++.+........ .........+++.+...+.+ +.-|...+...|.++++ ++....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~------~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP------SGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh------hhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhH
Confidence 466778888888888866654332210 00111234455555555544 33455558888888765 456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhc
Q 011470 422 SVATLANWLTVWLITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWV 469 (485)
Q Consensus 422 g~~~~~~~~g~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
.......++|..+++.+.+++.+..++...+....++.+.+++.+..-
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 778899999999999999999884444444444444444444444433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.025 Score=51.81 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHH--HHHHHHHHHH----------HHhhhHHHHHHHHHHHhhhhhhh
Q 011470 87 LFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAA--IPNIIGWLAI----------SFARESSFLYMGRLLEGFGVGII 153 (485)
Q Consensus 87 ~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~--~l~~~~~~~~----------~~~~~~~~~~~~r~l~G~~~~~~ 153 (485)
.....|.++-.+|....++.--+- .+|++...+. +++.-..++| .+.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 356678888888888777642111 2444333211 1222222222 12345677788899999999999
Q ss_pred hhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 011470 154 SYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGL 193 (485)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 193 (485)
...+..+..+..++++|..+..+......+|..+|..++-
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888888776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.099 Score=46.26 Aligned_cols=131 Identities=7% Similarity=0.060 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcC
Q 011470 86 SLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIA 165 (485)
Q Consensus 86 ~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 165 (485)
|.+.-+-.+...+..+......||+---+=+.+..++.+.+.++.+++++.++-+.+-.+..++.|..-..-.++-+ .+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence 44444445556666677777888875433345556677888889999999999998888888888876555444432 33
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh----hccc--cchhHHHh-hHHHHHHHHHHhhccCCc
Q 011470 166 PQNLRGALGSVNQLSVTIGIMLAYLL----GLFV--PWRILAVL-GILPCTILITGLFFIPES 221 (485)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~G~~~~~~~----~~~l--~wr~~f~~-~~~~~~~~~~~~~~~~e~ 221 (485)
++ ...+-++.+.+.++++|..- ..+. +=|...++ ..++.+.+...++.++++
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 32 23344444444444554332 2212 34555555 445555555555555543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=91.80 E-value=4.3 Score=35.51 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHh-hhchhHHHH----HHHHHHHHHHHHHHH-h----hhHHHHHHHHHHHhhhhhhhhh
Q 011470 86 SLFASLSNVGAMVGAITSGQISE-YIGRKGSLM----IAAIPNIIGWLAISF-A----RESSFLYMGRLLEGFGVGIISY 155 (485)
Q Consensus 86 ~~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~~~----~~~~l~~~~~~~~~~-~----~~~~~~~~~r~l~G~~~~~~~~ 155 (485)
....-++..|+.+|.+..|+... ++.||+.+. .+.+++.+..+.... . .+...+++.-|+.|+..=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455666677777777788776 445665444 334444444444211 1 1356677777887776544433
Q ss_pred hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 011470 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIML 187 (485)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 187 (485)
+...+=.| ++..++.+..-+++..+++|.++
T Consensus 224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence 33332223 23333334444455566666654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.15 E-value=4.1 Score=37.83 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchhhHHHHHHHHHHHHHHHHHHHHH-----HhcchhHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFESAGITSSDVATLGLGALQVIATGVTTWLAD-----KAGRRALLII 349 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~ 349 (485)
+..+.+.+..+........ -.|.+++..|.|-.......+.---.---++...+.| |+||||.-++
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence 4444444555555444444 7788888767664442221111111222334445555 9999986443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.07 E-value=14 Score=34.89 Aligned_cols=56 Identities=18% Similarity=-0.017 Sum_probs=25.5
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhHc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFESA-GITSSDVATLGLGALQVIATGVTTWLADKA 341 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 341 (485)
+++........++.+.+-.+++.+.. +.+++......+.+...+...+...+--|.
T Consensus 23 ~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 23 FLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred HHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444566666666666665 333322333333444444444444433333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.7 Score=38.83 Aligned_cols=146 Identities=17% Similarity=0.095 Sum_probs=95.6
Q ss_pred HHHHHhhhhccccccccccchh--HHHHHhhhCCCc-hhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHH
Q 011470 49 CVLIVALGPIQFGFTCGYSSPT--QTAITRDLELTL-SEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNI 124 (485)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~ 124 (485)
.++-++..++..++-...+.+. .|- .+.+..+. .|.-|....|.+|..++.--.-..--++ =--..+..-.+++.
T Consensus 252 ~MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff 330 (409)
T KOG3880|consen 252 YMVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFF 330 (409)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHH
Confidence 3444555555554433222221 111 34455553 4588988888887665432111110010 00122333444555
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc
Q 011470 125 IGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV 195 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 195 (485)
+...+..+.++++..++.-+..|+-.|..++-..--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 331 ~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 331 LLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 66667778899999999999999999999888888888888899999999999999999999998887554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.06 E-value=27 Score=35.15 Aligned_cols=146 Identities=13% Similarity=0.064 Sum_probs=80.2
Q ss_pred HHhHHHHHhHcCCCchhhHHH--HHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC---
Q 011470 301 VFYSSTIFESAGITSSDVATL--GLGALQVIATGVTTWLADKA-GRRALLIISSVGMTVSILIVAVSFFVKGFVSDD--- 374 (485)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 374 (485)
.....++....+.+....... ..........+++++++|-+ ||-+.+.++..+..++..++.............
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 344444445555555332222 23344456778889999975 888899999888888877766665544321110
Q ss_pred -C---cchh-hHHHHHHHHHHHHHHH-HhcCcccchhhhccccCCc----cchh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 375 -S---SCYS-ILDIFSVIGVVAMVVT-FSLGMGPIPWVIMSEILPI----NIKG--LAGSVATLANWLTVWLITMTANLL 442 (485)
Q Consensus 375 -~---~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~----~~~~--~~~g~~~~~~~~g~~~~~~i~g~~ 442 (485)
. .+.. ......++...+.... ...+.-|...+.-+|-+++ +.+. .-+.......+.|..++..+.-++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 0010 1111111222222221 2233345555777777772 2223 455566777788888888888777
Q ss_pred HHhh
Q 011470 443 LNWS 446 (485)
Q Consensus 443 ~~~~ 446 (485)
.+..
T Consensus 218 q~~~ 221 (571)
T KOG1237|consen 218 QDNV 221 (571)
T ss_pred hhcc
Confidence 6633
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.76 E-value=36 Score=33.05 Aligned_cols=118 Identities=14% Similarity=0.003 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhh-----------------HHHHHHHH
Q 011470 326 LQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSI-----------------LDIFSVIG 388 (485)
Q Consensus 326 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 388 (485)
+.++..++..++.+++.++++...........+++++...+.....-++++.+.. ..|. ...
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws-~s~ 152 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWS-YSL 152 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchH-HHH
Confidence 5677788888999999999888777666666666666655432221111111100 0011 111
Q ss_pred HHHHHHHHhcC-cccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 389 VVAMVVTFSLG-MGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 389 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
..++.=.++.. .+-..|..+.|....++..+-.++.+...+++..++..+..++..
T Consensus 153 ~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 153 FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222 222457889999999999999999999999999999988888765
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.34 E-value=6.1 Score=28.80 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHH
Q 011470 87 LFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAI 121 (485)
Q Consensus 87 ~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~ 121 (485)
+-.+.-+++..+.....||+.||| |.++..++..+
T Consensus 46 ~klssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 334445566667777899999998 45554444333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=35 Score=31.48 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=63.9
Q ss_pred hHHHHHhhh-CCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH----HHHHHH-HHHHHHHHHh----hhHHHH
Q 011470 70 TQTAITRDL-ELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM----IAAIPN-IIGWLAISFA----RESSFL 139 (485)
Q Consensus 70 ~~~~i~~~~-~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~----~~~~l~-~~~~~~~~~~----~~~~~~ 139 (485)
.+-.+...+ |-+--|.+.+.+.|.....+|+...-++.|.--.-+.+. +|++.. +...+-..|+ ++-+.+
T Consensus 29 al~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vl 108 (508)
T COG4262 29 ALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVL 108 (508)
T ss_pred HHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHH
Confidence 344555555 556678999999999999999999888877543332222 222211 1111222333 466788
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHh
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAE 163 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~ 163 (485)
++.-++.|.-.|...|..+.++..
T Consensus 109 y~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 109 YALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHH
Confidence 889999999999999999998876
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.46 E-value=14 Score=32.63 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhchh--HHHHHHHHHHHHHHHHHHHh----h---hHHHHHHHHHHHhhhhhhhhh
Q 011470 85 FSLFASLSNVGAMVGAITSGQISEYIGRK--GSLMIAAIPNIIGWLAISFA----R---ESSFLYMGRLLEGFGVGIISY 155 (485)
Q Consensus 85 ~~~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~l~~~~~~~~~~~----~---~~~~~~~~r~l~G~~~~~~~~ 155 (485)
.|.+.+.++++..+|+-+..++..|-..| ..+.+..++.++...+..+. | +...-+++.++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48999999999999999998888876654 44555554444433333322 1 222234555556667888999
Q ss_pred hHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHh----hccccchhHHHhhHHHHHHH
Q 011470 156 TVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLL----GLFVPWRILAVLGILPCTIL 211 (485)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~----~~~l~wr~~f~~~~~~~~~~ 211 (485)
....+=+++.|++.|...+.++..-.++=.-++-.. +.-.+-|.+|-++.....+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 999999999999999988887765444322222111 11125677787765554443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.41 E-value=4.9 Score=29.27 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011470 413 PINIKGLAGSVATLANWLTVWLITMTANLLLN 444 (485)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~ 444 (485)
.++.++.+.++-...-.+++++.....|++.|
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888889999999999999999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 485 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.34 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.32 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.22 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.12 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=379.38 Aligned_cols=428 Identities=29% Similarity=0.494 Sum_probs=344.5
Q ss_pred cchhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCC--------CchhhhHHHHHHHHHHHHHHHhHHHHHhhhch
Q 011470 41 DSSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLEL--------TLSEFSLFASLSNVGAMVGAITSGQISEYIGR 112 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Gr 112 (485)
.++++.+.+.++.+++.++.++|.+.++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777777888899999999999999999999998843 34467899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHH
Q 011470 113 KGSLMIAAIPNIIGWLAIS------------------FARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALG 174 (485)
Q Consensus 113 r~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (485)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999999 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc------------cchhHHHhhHHHHHHHHHHhhccCCchhHHHhcCCHHHHHHHHHHHh
Q 011470 175 SVNQLSVTIGIMLAYLLGLFV------------PWRILAVLGILPCTILITGLFFIPESPRWLAKMGMTEDFEASLQVLR 242 (485)
Q Consensus 175 ~~~~~~~~~G~~~~~~~~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 242 (485)
++.+.+..+|.++++.++... .||+.+.+..++.++.++..+++||+|+|+..+++.+++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999988776433 48888888888888888888999999999999999999998888765
Q ss_pred CCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHH
Q 011470 243 GFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VAT 320 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~ 320 (485)
+.+...++..+..+...+ .++....... ...++.........+.++.+.+.+..|.+.+.+..+.+... ...
T Consensus 245 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDH---GRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHh---hhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 432221111111111100 0011111111 22334456666677777778888899999999888876554 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCc
Q 011470 321 LGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGM 400 (485)
Q Consensus 321 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (485)
...++..+++.++++++.||+|||+.+..+...+.++.+.+......... ....++...++..+++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHH
Confidence 56678889999999999999999999999888888887776655433321 2334455556667777888
Q ss_pred ccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHHHHHhcccCC
Q 011470 401 GPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLN-------WSGGGTFAIYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
.++.+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ .+....++++++++++..++.++++||||
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 88889999999999999999999999999999999998887644 23445677888888888888999999999
Q ss_pred CCCHHHHHhhhC
Q 011470 474 GKTLEEIQRSLR 485 (485)
Q Consensus 474 ~~~~~~~~~~~~ 485 (485)
+|++||+|+.||
T Consensus 468 g~tLeei~~~f~ 479 (491)
T 4gc0_A 468 GKTLEELEALWE 479 (491)
T ss_dssp TCCHHHHGGGTC
T ss_pred CCCHHHHHHHhC
Confidence 999999998875
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=312.15 Aligned_cols=393 Identities=12% Similarity=0.081 Sum_probs=282.8
Q ss_pred hhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH
Q 011470 43 SISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIP 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l 122 (485)
+++++..+..++++.+..+++....++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344566677777788888899999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---
Q 011470 123 NIIGWLAISF----ARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV--- 195 (485)
Q Consensus 123 ~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l--- 195 (485)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -c-chhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHH
Q 011470 196 -P-WRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSE 272 (485)
Q Consensus 196 -~-wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (485)
+ ||+.|++.++..++ .++.++++||+|+....+++.++. ++...+ .++..+++...++...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cccccc---chhhhhcccccccchHHH
Confidence 7 99999997766555 555667788887543211111000 000000 000000011111111233
Q ss_pred hhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHh--cchhHH
Q 011470 273 LKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKA--GRRALL 347 (485)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 347 (485)
.++++. ++...+..+...........+.|.+.++ .|.+... .......++.+++.++.+++.||+ +||+.+
T Consensus 248 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 333332 3444444444444566677888888877 6887665 555566788999999999999999 999887
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHH
Q 011470 348 IISSVGMT-VSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATL 426 (485)
Q Consensus 348 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 426 (485)
..+..+.. ++.+++... .. ...+......++.+.+.+. ..+....+..|.+|++.|+++.|+.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMN---PA----------GNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHHHHHHHTTSC---CT----------TCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---cc----------cCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 76665554 333332211 00 0112223333333333332 234445889999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHh
Q 011470 427 ANWL-TVWLITMTANLLLNW-SGGGTFAIYTVVSAFTVAFVSIW 468 (485)
Q Consensus 427 ~~~~-g~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 468 (485)
..++ |..++|.+.|.+.+. +....+...+++.++..++.+..
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999995 44444555555555554444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=295.62 Aligned_cols=346 Identities=12% Similarity=0.098 Sum_probs=260.4
Q ss_pred HHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHH
Q 011470 47 LACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIG 126 (485)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~ 126 (485)
+..+..+++..+..+++....++.+|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||++++++.++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33444555566667888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc-----c--
Q 011470 127 WLAI---SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-----P-- 196 (485)
Q Consensus 127 ~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-----~-- 196 (485)
.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+ +
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 88899999999999999999999999999999999999999999999999999999999988766 2
Q ss_pred -----------------------chhHHHhhHHHHHHHHHHh--hccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHH
Q 011470 197 -----------------------WRILAVLGILPCTILITGL--FFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIE 251 (485)
Q Consensus 197 -----------------------wr~~f~~~~~~~~~~~~~~--~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (485)
||+.|++.+...++..+.. ...||+++...+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------------------ 240 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS------------------------ 240 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC------------------------
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc------------------------
Confidence 9999977554444433222 234555421000
Q ss_pred HHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHH-HhHc-CCCchh--hHHHHHHHHH
Q 011470 252 VNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTI-FESA-GITSSD--VATLGLGALQ 327 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~ 327 (485)
++++++.+..++++++++..+...+ ..+...........+.|.+ .++. |.+... .......++.
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 241 --------DAKQGSFSASLSRLARIRHWRWAVL----AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_dssp --------CSSTTSHHHHHHHHTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred --------cccccchhhhHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Confidence 0111222334555665554333332 2333333355666777777 7766 887665 5555667888
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhh
Q 011470 328 VIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVI 407 (485)
Q Consensus 328 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (485)
+++.++.+++.||++||+.+..+.++..++.+++.... .....+...+.+.+.+. ..+..+.+
T Consensus 309 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~~~~~-~~~~~~~~ 371 (438)
T 3o7q_A 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----------------GHVGLIALTLCSAFMSI-QYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC----------------CcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999998888877766665554321 01122333444444433 34556688
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011470 408 MSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNWSG 447 (485)
Q Consensus 408 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~~~ 447 (485)
..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.|..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 88888866 888888877 677999999999999999544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=269.30 Aligned_cols=387 Identities=12% Similarity=0.069 Sum_probs=244.9
Q ss_pred hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 011470 78 LELTLSEFSLFASLSNVGAMVGAITSGQISEY-IGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYT 156 (485)
Q Consensus 78 ~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 156 (485)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHhhcc-CCc----hhHH
Q 011470 157 VPVYIAEIAPQNL--RGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGLFFI-PES----PRWL 225 (485)
Q Consensus 157 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~~~~-~e~----p~~~ 225 (485)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++.++..++. |+. .+..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 77788889999999999999988775 89999999766555543333322 211 1111
Q ss_pred HhcCCHHHHHHHHHH---------------HhCCCcchHHHHHHHHH--------HHhhccccchhhhHHhhhcccchhH
Q 011470 226 AKMGMTEDFEASLQV---------------LRGFDTDISIEVNEIKR--------SVASSSRRTTIRFSELKQRRYYFPL 282 (485)
Q Consensus 226 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (485)
..+.+.++.++..+. ......+.+........ ......+++..... .+++...
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 284 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST--EHLRVVS-- 284 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CTT--
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH--HHHHHHH--
Confidence 111122332222221 00001011000000000 00000000000000 1111111
Q ss_pred HHHHHHHHHHhhcchhhHHHhHHHHHhH-cCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-----HHHHHH
Q 011470 283 TVGIGLLILQQLSGINGVVFYSSTIFES-AGIT--SSDVATLGLGALQVIATGVTTWLADKAGRRALLI-----ISSVGM 354 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~ 354 (485)
.+...+.....+..+.....+.+.+.++ .+.+ ..........+..+++.++.+++.||++||+... .+..+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 1112222222222233444455666655 3444 2335566667888888999999999999886544 555555
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHH
Q 011470 355 TVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWL 434 (485)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 434 (485)
+++.+++.......... .+ ...+.......+.+.+.+. ..+..+.++.|.+|++.|+++.|+.+...++|..+
T Consensus 365 ~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 365 GLSFLLMAIPGALYGTS-GK-----VSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHTTTHHHHHHCCCC-TT-----CCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CC-----ccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554433221100 00 0112233334444444443 34555689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccCCCC
Q 011470 435 ITMTANLLLNWSGGGTFAIYTVVSAFTVAFVSIWVPETKGK 475 (485)
Q Consensus 435 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
+|.+.+.+.+.+....+...++++++..++.++..++.+++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776777777777777776666666655443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=268.63 Aligned_cols=351 Identities=14% Similarity=0.142 Sum_probs=254.6
Q ss_pred HHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 011470 51 LIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAI 130 (485)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~ 130 (485)
.++++..+..+++.....+.+|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34455566667888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----cchhHHHhhHH
Q 011470 131 SFARESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----PWRILAVLGIL 206 (485)
Q Consensus 131 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~ 206 (485)
++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876 79999998776
Q ss_pred HHHHHHH-HhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHH
Q 011470 207 PCTILIT-GLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVG 285 (485)
Q Consensus 207 ~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (485)
..++..+ ..+++||+++... ++++...++++.++++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~---- 203 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDA-----------------------------------PRTRLLTSYKTLFGNSGFNC---- 203 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTC-----------------------------------CCCCTTTCSTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCcccCCCCc-----------------------------------ccccHHHHHHHHhcCcchHH----
Confidence 6655444 5667788753210 00112223444454443322
Q ss_pred HHHHHHHhhcchhhHHHhHHHHHhH-cCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHH
Q 011470 286 IGLLILQQLSGINGVVFYSSTIFES-AGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVG-MTVSILIV 361 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~ 361 (485)
..+..+...........+.|.+.++ .|.++.. .......++.+++.++.+++.||.+++ ...+... ...+...+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2222233333344555566666555 5665444 444555778888889999999998872 2222222 22222211
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
....... ...+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+...++|..++|.+.|.
T Consensus 282 ~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 282 IPDWFGV-----------MNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHhhhcc-----------ccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000 01122334444455555544 4455588899988 899999999999999999999999999
Q ss_pred HHHhhcchhHHHHH
Q 011470 442 LLNWSGGGTFAIYT 455 (485)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (485)
+.+.++........
T Consensus 349 l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 349 LPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhcCCcccHHHHHH
Confidence 98865544444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-30 Score=245.51 Aligned_cols=366 Identities=11% Similarity=0.047 Sum_probs=218.7
Q ss_pred cccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH---HHHHHhhhH-HHH
Q 011470 65 GYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGW---LAISFARES-SFL 139 (485)
Q Consensus 65 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~---~~~~~~~~~-~~~ 139 (485)
....+.+|. +++++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. ...++++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666 566799999999999999999999999999999999999999999888776532 222333322 124
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCC--CcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHHHHHHH
Q 011470 140 YMGRLLEGFGVGIISYTVPVYIAEIAPQ--NLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCTILITG 214 (485)
Q Consensus 140 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~~~~~~ 214 (485)
...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 5567777776666555555555555443 3456666777667777888888777665 7999999876665554444
Q ss_pred hhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHHHHHhh
Q 011470 215 LFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLLILQQL 294 (485)
Q Consensus 215 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (485)
.++.+|+++. +.+.++ . + .+++++.....++++++++..+...+ ..+...
T Consensus 184 ~~~~~~~~~~---~~~~~~-----------~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 233 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN-----------A-V-----------GANHSAFSLKLALELFRQPKLWFLSL----YVIGVS 233 (417)
T ss_dssp SCSSCCCCSC---SSCSSS-----------S-S-----------SSCCCCCCHHHHHHHTTCHHHHHHHH----HHHHHH
T ss_pred HHHcCccccc---cccccc-----------c-c-----------ccccccccHHHHHHHhcCCchhhHHH----HHHHHH
Confidence 4454443311 000000 0 0 00000111122334444433222221 111111
Q ss_pred cchhhHHHhHHHHHhHc-CCC---chh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011470 295 SGINGVVFYSSTIFESA-GIT---SSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVK 368 (485)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-g~~---~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (485)
..+.....+.|.+..+. +.. ... .......+..+++.++.++++||++||+.+..+..+.+++.+.+... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~ 310 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 12233334455555443 211 111 23334456778899999999999999998887776666554433211 0
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHh-h
Q 011470 369 GFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA-TLANWLTVWLITMTANLLLNW-S 446 (485)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~i~g~~~~~-~ 446 (485)
+ .+..++...+....... ..+..+.+..|.+|++.|+++.+.. +...++|++++|.+.|.+.+. +
T Consensus 311 ~------------~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 311 S------------ALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp S------------HHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred c------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence 0 11112222222222221 1223358999999999999999995 888899999999999999884 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011470 447 GGGTFAIYTVVSAFTVAFVSIWVPETKGKT 476 (485)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (485)
....+...++++++..++.+...+|+++.+
T Consensus 378 ~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 378 FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 344455556555555555555566555433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=240.79 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=131.2
Q ss_pred HHHHHhhhC------CCchhhhHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHH
Q 011470 71 QTAITRDLE------LTLSEFSLFASLSNVGAMVGAITSGQISEYI-GRKGSLMIAAIPNIIGWLAISFAR-ESSFLYMG 142 (485)
Q Consensus 71 ~~~i~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 142 (485)
.+.+.+++| .+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345678899 9999999999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHH---HHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHHHHHh
Q 011470 143 RLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSV---NQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTILITGL 215 (485)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~~~~ 215 (485)
|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+ +||+.|++.++..++..+..
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876666 8899999999999988765 89999998776655544443
Q ss_pred h
Q 011470 216 F 216 (485)
Q Consensus 216 ~ 216 (485)
+
T Consensus 196 ~ 196 (524)
T 2xut_A 196 W 196 (524)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=135.82 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=130.6
Q ss_pred ccccccchhHHHHHhh-hCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHHh--hh
Q 011470 62 FTCGYSSPTQTAITRD-LELTLSEFSLFASLSNVGAMVGAITSGQISEYI--GRKGSLMIAAIPNI-IGWLAISFA--RE 135 (485)
Q Consensus 62 ~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~l~~-~~~~~~~~~--~~ 135 (485)
..........|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 345 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC
Confidence 3333445567777666 899999999999999999999999999999999 99999988887776 666666665 37
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHH-HHHHHHHhhccc----cchhHHHhhHHHHHH
Q 011470 136 SSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTI-GIMLAYLLGLFV----PWRILAVLGILPCTI 210 (485)
Q Consensus 136 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~wr~~f~~~~~~~~~ 210 (485)
.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 425 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 425 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 788888889999999999999999999999999999999999999999 999999887765 799998887766666
Q ss_pred HHHHhhcc
Q 011470 211 LITGLFFI 218 (485)
Q Consensus 211 ~~~~~~~~ 218 (485)
..+..+++
T Consensus 426 ~~~~~~~~ 433 (451)
T 1pw4_A 426 AVILLIVV 433 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-12 Score=119.48 Aligned_cols=147 Identities=9% Similarity=-0.045 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhcchhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011470 284 VGIGLLILQQLSGINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIV 361 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 361 (485)
..+.+..+.............|.+.++.|.+..+ .......++..++.++.|+++||+|||+.+..+..+.+++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3333444444444456667788888999998877 55566678889999999999999999999999999888888777
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011470 362 AVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANL 441 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~ 441 (485)
.......+ .+..++..++.+.+.+... +...+++.|.+|+++|+.+.++.+....+|..++|.+.+.
T Consensus 109 ~~~~~~~~------------~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 109 WPAAEIMN------------YTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHTTC------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred Hhcccccc------------HHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322221 1333444555555555443 3445999999999999999999999999999999999999
Q ss_pred HH
Q 011470 442 LL 443 (485)
Q Consensus 442 ~~ 443 (485)
+.
T Consensus 176 l~ 177 (438)
T 3o7q_A 176 LI 177 (438)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=127.19 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=115.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 011470 82 LSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYTVPVYI 161 (485)
Q Consensus 82 ~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 161 (485)
..+.++..++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999999999999999999999988888877777778888888888888888877777788999
Q ss_pred HhcCCCCcchhHHHH-HHHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHHH-HHHhhccCCch
Q 011470 162 AEIAPQNLRGALGSV-NQLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTIL-ITGLFFIPESP 222 (485)
Q Consensus 162 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~~-~~~~~~~~e~p 222 (485)
.|.+|++.|+.+.++ ++....+|.+++|.+++.+ +++..|.+.++..++. ++.+++.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 4777888988888888765 6777887766655554 34455566654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=124.09 Aligned_cols=154 Identities=15% Similarity=0.053 Sum_probs=119.6
Q ss_pred chhHHHH-HhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-----HHHHHHHHHHHHHHHhh-------
Q 011470 68 SPTQTAI-TRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLM-----IAAIPNIIGWLAISFAR------- 134 (485)
Q Consensus 68 ~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-----~~~~l~~~~~~~~~~~~------- 134 (485)
...+|.. .+.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445544 4446777778899999999999999999999999999987655 77777777777777654
Q ss_pred --hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHhhHHHHH
Q 011470 135 --ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVLGILPCT 209 (485)
Q Consensus 135 --~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~~~~~~~ 209 (485)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|++.+...+
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSV 462 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7778888899999999999999999999999999999999999999999999999998877 56666776554444
Q ss_pred H-HHHHhhccCCc
Q 011470 210 I-LITGLFFIPES 221 (485)
Q Consensus 210 ~-~~~~~~~~~e~ 221 (485)
+ .++.+++.++.
T Consensus 463 ~~~~~~~~~~~~~ 475 (491)
T 4aps_A 463 VLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHH
Confidence 4 44444444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=125.86 Aligned_cols=156 Identities=14% Similarity=0.033 Sum_probs=113.2
Q ss_pred ccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh-----hHHHHH
Q 011470 66 YSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFAR-----ESSFLY 140 (485)
Q Consensus 66 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-----~~~~~~ 140 (485)
......|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+... +...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 344456778888888888888888888899999999999999999999999999988888777665532 122222
Q ss_pred H-HHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc----------cchhHHHhhHHHHH
Q 011470 141 M-GRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV----------PWRILAVLGILPCT 209 (485)
Q Consensus 141 ~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------~wr~~f~~~~~~~~ 209 (485)
. .-+..+++ ....+....+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.+...+
T Consensus 375 ~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 375 SMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 22222222 234467788999999999999999999988888888876554322 45566666444444
Q ss_pred H-HHHHhhccCCch
Q 011470 210 I-LITGLFFIPESP 222 (485)
Q Consensus 210 ~-~~~~~~~~~e~p 222 (485)
+ .++.++++||+.
T Consensus 454 ~~~i~~~~~~PETk 467 (491)
T 4gc0_A 454 LAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHCCCCT
T ss_pred HHHHHHHheecCCC
Confidence 4 666778899984
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=114.22 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=115.7
Q ss_pred chhhHHHhHHHHHhHcCCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011470 296 GINGVVFYSSTIFESAGITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAVSFFVKGFVSD 373 (485)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.........|.+.++.|.++.+ .......+...++.++.|+++||+|||+.+..+.....++.++......
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------- 87 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS------- 87 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc-------
Confidence 3455556677788888988776 4555668888999999999999999999999998888888777765421
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 011470 374 DSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLANWLTVWLITMTANLLLNW-SGGGTFA 452 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~i~g~~~~~-~~~~~~~ 452 (485)
.+..+...++.+.+.+. ..+....++.|.+|+++|+++.+..+....+|..++|.+.+.+.+. +....+.
T Consensus 88 --------~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 88 --------LTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 12233333444444433 3445558999999999999999999999999999999999988774 4333444
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 011470 453 IYTVVSAFTVAFVSIWVPETK 473 (485)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~ 473 (485)
+.++...+..+......||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHCcccC
Confidence 444444444443445556543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=107.75 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred hhhHHHhHHHHH-hHcC------CCchh--hHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHH
Q 011470 297 INGVVFYSSTIF-ESAG------ITSSD--VATLGLGALQVIATGVTTWLADKA-GRRALLIISSVGMTVSILIVAVSFF 366 (485)
Q Consensus 297 ~~~~~~~~~~~~-~~~g------~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (485)
++....+.+.++ ++.| .+..+ .......++..++.++.|+++||+ |||+.+..+.++..++.+++....
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~- 106 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE- 106 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-
Confidence 444445555554 4567 77665 555566788899999999999999 999999988888877777665431
Q ss_pred hhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHH---HHHHHHHHHHHHHHHHHHHH
Q 011470 367 VKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSV---ATLANWLTVWLITMTANLLL 443 (485)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~i~g~~~ 443 (485)
. ..+..++..++.+.+.+. ..+...+++.|.+|+++|+.+.+. .+....+|..++|.+.+.+.
T Consensus 107 -~------------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 107 -H------------SVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp -S------------CHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred -c------------cHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 112333444444544443 345555899999999999876666 88899999999999999998
Q ss_pred Hhhc-chhHHHHHHHHHH
Q 011470 444 NWSG-GGTFAIYTVVSAF 460 (485)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~ 460 (485)
+..+ ...+.+.+++.++
T Consensus 173 ~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HTSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 8433 3344444444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.33 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-39 Score=311.32 Aligned_cols=411 Identities=13% Similarity=0.079 Sum_probs=276.0
Q ss_pred chhHHHHHHHHHhhhhccccccccccchhHHHHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHH
Q 011470 42 SSISVLACVLIVALGPIQFGFTCGYSSPTQTAITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAI 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 121 (485)
.++++|.++..++++++..++++..++.+.|.+. |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3455677778888888888888888888888765 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHhhccc--
Q 011470 122 PNIIGWLAISFAR----ESSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFV-- 195 (485)
Q Consensus 122 l~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l-- 195 (485)
+.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999998864 7789999999999999999999999999999999999999999999999999988776543
Q ss_pred ---cchhHHHhhHHHHHH-HHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhH
Q 011470 196 ---PWRILAVLGILPCTI-LITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFS 271 (485)
Q Consensus 196 ---~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (485)
+||+.|++.++..++ .++.+++.+|+|+.......+++. ....++..+..+++...++...+
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------------NDYPDDYNEKAEQELTAKQIFMQ 243 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------CC-------------CCTHHHHH
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh--------------hhcccchhhccccccchhhHHHH
Confidence 799998886655544 566666777766432221111100 00000001111111122222233
Q ss_pred HhhhcccchhHHHHHHHHHHHhhcchhhHHHhHHHHHhHc-CCCchh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 011470 272 ELKQRRYYFPLTVGIGLLILQQLSGINGVVFYSSTIFESA-GITSSD--VATLGLGALQVIATGVTTWLADKAGRRALLI 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 348 (485)
..++++ ..+......+...........+.+.+..+. +.+... .......+..+++.++.+++.||++|++...
T Consensus 244 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 244 YVLPNK----LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHcCc----hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 333333 244444444444444556667777776654 666554 5555667888999999999999999876554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHHHHHH
Q 011470 349 ISSVGMTVSILIVAVSFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVATLAN 428 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 428 (485)
.......+............. ...+...+..++.+++. .+..+....+..|.+|++.||++.|+.+...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWMNPA----------GNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388 (447)
T ss_dssp HHHHHHHHHHHHHHHTTSCCT----------TCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 443333332222222111110 01122223333333332 2334455688999999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhh
Q 011470 429 WLT-VWLITMTANLLLNWS-GGGTFAIYTVVSAFTVAFVSIWVPETKGKTLEEIQRS 483 (485)
Q Consensus 429 ~~g-~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
+++ ..++|.+.|.+.|.. ....+....+++++..++.+.+.+++++| .++..+|
T Consensus 389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~e 444 (447)
T d1pw4a_ 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR-HEQLLQE 444 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHh
Confidence 875 566899999999944 44445555555555555544444433332 3444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.9e-29 Score=236.47 Aligned_cols=371 Identities=11% Similarity=0.012 Sum_probs=238.3
Q ss_pred cccccccchhHHH-HHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHH-
Q 011470 61 GFTCGYSSPTQTA-ITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSF- 138 (485)
Q Consensus 61 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~- 138 (485)
.+..+...|.+|. +.+++|+|++++|++.+++.+++.++++++|+++||+||||+++++..+..++..+..+..+...
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4455566778886 67789999999999999999999999999999999999999999999999999888888766554
Q ss_pred ---HHHHHHHHhhhhhhhhhhHHHHHHhcCCC--CcchhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHh-hHHHHH
Q 011470 139 ---LYMGRLLEGFGVGIISYTVPVYIAEIAPQ--NLRGALGSVNQLSVTIGIMLAYLLGLFV---PWRILAVL-GILPCT 209 (485)
Q Consensus 139 ---~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~wr~~f~~-~~~~~~ 209 (485)
.++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+ +|+..+.. .....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 179 (417)
T d1pv7a_ 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHH
Confidence 34555666665555555555554444432 2345566677777777888888777666 55555555 445555
Q ss_pred HHHHHhhccCCchhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhccccchhhhHHhhhcccchhHHHHHHHH
Q 011470 210 ILITGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISIEVNEIKRSVASSSRRTTIRFSELKQRRYYFPLTVGIGLL 289 (485)
Q Consensus 210 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
..++..+..+|+|+...++ ++ ..+.+++..........+.+..+.........
T Consensus 180 ~~~~~~~~~~~~~~~~~~~--~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T d1pv7a_ 180 LAVLLFFAKTDAPSSATVA--NA-------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp HHHHHHSSCCCSCSSSCSS--HH-------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhhh--hh-------------------------hhhhcccccccccccccccccccchhhhhHHH
Confidence 5666667777765321110 00 00111111222222223233222222222222
Q ss_pred HHHhhcchhhHHHhHHHHHhHcCCCc----hh--hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011470 290 ILQQLSGINGVVFYSSTIFESAGITS----SD--VATLGLGALQVIATGVTTWLADKAGRRALLIISSVGMTVSILIVAV 363 (485)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~g~~~----~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 363 (485)
... ..........+......+. .. .......++..++..+.+++.||.++|+.+..+..+..++.+.+..
T Consensus 233 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 233 SCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 221 1222222222222222211 11 3344456778889999999999999999998888777776666543
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHhcCcccchhhhccccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 011470 364 SFFVKGFVSDDSSCYSILDIFSVIGVVAMVVTFSLGMGPIPWVIMSEILPINIKGLAGSVA-TLANWLTVWLITMTANLL 442 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~i~g~~ 442 (485)
.. ..+...+...+.+.+.+.. .+...++..|.+|++.|+++.|+. +....+|..++|.+.|++
T Consensus 309 ~~---------------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 309 AT---------------SALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp CC---------------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cc---------------ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1123334444444444443 344458999999999999999986 556779999999999999
Q ss_pred HH-hhcchhHHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 011470 443 LN-WSGGGTFAIYTVVSAFTVAFVSIWVPETKGKTLE 478 (485)
Q Consensus 443 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (485)
.| .+....+.+.+++.++..++..+.+++++..+.+
T Consensus 373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 373 YESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 99 5555667777777777777777777777666653
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=9e-15 Score=136.64 Aligned_cols=145 Identities=14% Similarity=0.083 Sum_probs=123.3
Q ss_pred hhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 011470 77 DLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISFARESSFLYMGRLLEGFGVGIISYT 156 (485)
Q Consensus 77 ~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 156 (485)
+.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 33445667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchhHHHHH-HHHHHHHHHHHHHhhccc----cchhHHHhhHHHHHH-HHHHhhccCCc
Q 011470 157 VPVYIAEIAPQNLRGALGSVN-QLSVTIGIMLAYLLGLFV----PWRILAVLGILPCTI-LITGLFFIPES 221 (485)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l----~wr~~f~~~~~~~~~-~~~~~~~~~e~ 221 (485)
..+++.|.+|+++|++..++. +....+|..++|.+++.+ ||+..|++.++..++ .++..+.++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999975 556778888888887766 899998885555444 44555555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=5.3e-12 Score=119.08 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=107.0
Q ss_pred HHHhhhCCCchhhhHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHh
Q 011470 73 AITRDLELTLSEFSLFASLSNVGAMVGAITSGQISEYIGRKGSLMIAAIPNIIGWLAISF-----ARESSFLYMGRLLEG 147 (485)
Q Consensus 73 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~r~l~G 147 (485)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+....... ..+.+...+.-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 455668999999999999999999999999999999999875444333333222222221 356777888888999
Q ss_pred hhhhhhhhhHHHHHHhcCCCCcchhHHHHHHHHHHH-HHHHHHHhhccc----cchhHHHhhHHHHHHHH
Q 011470 148 FGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTI-GIMLAYLLGLFV----PWRILAVLGILPCTILI 212 (485)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~wr~~f~~~~~~~~~~~ 212 (485)
++.+...+....+..|.+|+++|+++.++.+....+ |.+++|.+.+.+ ||+..|++.....++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 424 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999888899999999999999999999998877666 556677776554 89988887555554433
|